matryoshka-rlm 0.2.3 → 0.2.5

package/README.md

@@ -63,6 +63,28 @@ The Lattice engine (`src/logic/`) processes Nucleus commands:
 
 Lattice uses **miniKanren** (a relational programming engine) for pattern classification and filtering operations.
 
+### SQLite Handle-Based Persistence
+
+For large result sets, RLM uses a handle-based architecture (`src/persistence/`) that achieves **97%+ token savings**:
+
+```
+Traditional:  LLM sees full array    [15,000 tokens for 1000 results]
+Handle-based: LLM sees stub          [50 tokens: "$res1: Array(1000) [preview...]"]
+```
+
+**How it works:**
+1. Results are stored in SQLite with FTS5 full-text indexing
+2. LLM receives only handle references (`$res1`, `$res2`, etc.)
+3. Operations execute server-side, returning new handles
+4. Full data is only materialized when needed
+
+**Components:**
+- `SessionDB` - In-memory SQLite with FTS5 for fast full-text search
+- `HandleRegistry` - Stores arrays, returns compact handle references
+- `HandleOps` - Server-side filter/map/count/sum on handles
+- `FTS5Search` - Phrase queries, boolean operators, relevance ranking
+- `CheckpointManager` - Save/restore session state
+
 ### Pre-Search Optimization
 
 Before calling the LLM, the system extracts keywords from your query and pre-runs grep:
@@ -104,6 +126,7 @@ The LLM never writes JavaScript. It outputs Nucleus commands that Lattice execut
 | **Nucleus Adapter** | Prompts LLM to output Nucleus commands |
 | **Lattice Parser** | Parses S-expressions to AST |
 | **Lattice Solver** | Executes commands against document |
+| **SQLite Persistence** | Handle-based storage with FTS5 (97% token savings) |
 | **miniKanren** | Relational engine for classification |
 | **Pre-Search** | Extracts keywords and pre-runs grep |
 | **RAG Hints** | Few-shot examples from past successes |
@@ -221,7 +244,7 @@ rlm-mcp --test
 
 ### Lattice MCP Server
 
-For direct access to the Nucleus engine without LLM orchestration, use `lattice-mcp`. This is useful when you want to run precise, programmatic queries.
+For direct access to the Nucleus engine without LLM orchestration, use `lattice-mcp`. This is useful when you want to run precise, programmatic queries with **80%+ token savings** compared to reading files directly.
 
 #### Lattice MCP Tools
 
@@ -248,15 +271,22 @@ For direct access to the Nucleus engine without LLM orchestration, use `lattice-
 }
 ```
 
-#### Usage Pattern
+#### Efficient Usage Pattern
 
 ```
-1. lattice_load("/path/to/file.txt")  # Load document
-2. lattice_query('(grep "ERROR")')    # Search - results bound to RESULTS
-3. lattice_query('(count RESULTS)')   # Chain operations
-4. lattice_close()                    # Free memory when done
+1. lattice_load("/path/to/large-file.txt")   # Load document (use for >500 lines)
+2. lattice_query('(grep "ERROR")')           # Search - shows preview of first 20
+3. lattice_query('(filter RESULTS ...)')     # Narrow down - updates RESULTS
+4. lattice_query('(count RESULTS)')          # Get count without listing all
+5. lattice_close()                           # Free memory when done
 ```
 
+**Token efficiency tips:**
+- Use `(count RESULTS)` instead of viewing all results
+- Chain `grep → filter → count/sum` to refine progressively
+- Results show preview (first 20), use filter to narrow down
+- Previous results available as `_1`, `_2`, etc.
+
 ### Programmatic
 
 ```typescript
@@ -449,6 +479,14 @@ src/
 │   ├── lc-solver.ts    # Command executor (uses miniKanren)
 │   ├── type-inference.ts
 │   └── constraint-resolver.ts
+├── persistence/        # SQLite handle-based storage (97% token savings)
+│   ├── session-db.ts   # In-memory SQLite with FTS5
+│   ├── handle-registry.ts  # Handle creation and stubs
+│   ├── handle-ops.ts   # Server-side operations
+│   ├── fts5-search.ts  # Full-text search
+│   └── checkpoint.ts   # Session persistence
+├── engine/             # Nucleus execution engine
+│   └── nucleus-engine.ts
 ├── minikanren/         # Relational programming engine
 ├── synthesis/          # Program synthesis (Barliman-style)
 │   └── evalo/          # Extractor DSL

package/dist/engine/handle-session.d.ts

@@ -0,0 +1,149 @@
+/**
+ * HandleSession - Handle-based document analysis session
+ *
+ * Wraps NucleusEngine with handle-based persistence for 97%+ token savings.
+ * Query results are stored in SQLite and only handle stubs are returned to the LLM.
+ */
+/**
+ * Result of a handle-based query execution
+ */
+export interface HandleResult {
+    success: boolean;
+    /** Handle reference (e.g., "$res1") if result is an array */
+    handle?: string;
+    /** Handle stub for LLM context (e.g., "$res1: Array(1000) [preview...]") */
+    stub?: string;
+    /** Scalar value if result is not an array */
+    value?: unknown;
+    /** Execution logs */
+    logs: string[];
+    /** Error message if failed */
+    error?: string;
+    /** Inferred type */
+    type?: string;
+}
+/**
+ * Options for expanding a handle
+ */
+export interface ExpandOptions {
+    /** Maximum number of items to return (default: all) */
+    limit?: number;
+    /** Offset for pagination */
+    offset?: number;
+    /** Format: 'full' returns all fields, 'lines' returns just line content */
+    format?: "full" | "lines";
+}
+/**
+ * Result of expanding a handle
+ */
+export interface ExpandResult {
+    success: boolean;
+    data?: unknown[];
+    total?: number;
+    offset?: number;
+    limit?: number;
+    error?: string;
+}
+/**
+ * HandleSession - combines NucleusEngine with handle-based storage
+ */
+export declare class HandleSession {
+    private engine;
+    private db;
+    private registry;
+    private ops;
+    private documentPath;
+    private documentSize;
+    private loadedAt;
+    private lastAccessedAt;
+    private queryCount;
+    constructor();
+    /**
+     * Load a document from file
+     */
+    loadFile(filePath: string): Promise<{
+        lineCount: number;
+        size: number;
+    }>;
+    /**
+     * Load a document from string content
+     */
+    loadContent(content: string, path?: string): {
+        lineCount: number;
+        size: number;
+    };
+    /**
+     * Check if a document is loaded
+     */
+    isLoaded(): boolean;
+    /**
+     * Get document statistics
+     */
+    getStats(): {
+        path: string;
+        lineCount: number;
+        size: number;
+        loadedAt: Date | null;
+    } | null;
+    /**
+     * Execute a Nucleus query and return handle-based result
+     *
+     * Arrays are stored in SQLite and a handle stub is returned.
+     * Scalars are returned directly.
+     */
+    execute(command: string): HandleResult;
+    /**
+     * Expand a handle to get full data
+     *
+     * Use this when the LLM needs to see actual data for decision-making.
+     */
+    expand(handle: string, options?: ExpandOptions): ExpandResult;
+    /**
+     * Get a preview of handle contents (first N items)
+     */
+    preview(handle: string, n?: number): unknown[];
+    /**
+     * Get a random sample from a handle
+     */
+    sample(handle: string, n?: number): unknown[];
+    /**
+     * Describe handle contents (schema + stats)
+     */
+    describe(handle: string): {
+        count: number;
+        fields: string[];
+        sample: unknown[];
+    };
+    /**
+     * Get current handle bindings as stubs
+     */
+    getBindings(): Record<string, string>;
+    /**
+     * Build context string with all handle stubs
+     */
+    buildContext(): string;
+    /**
+     * Reset bindings but keep document loaded
+     */
+    reset(): void;
+    /**
+     * Get session info
+     */
+    getSessionInfo(): {
+        documentPath: string;
+        documentSize: number;
+        loadedAt: Date | null;
+        lastAccessedAt: Date | null;
+        queryCount: number;
+        handleCount: number;
+    };
+    /**
+     * Close the session and free resources
+     */
+    close(): void;
+    /**
+     * Get command reference
+     */
+    static getCommandReference(): string;
+}
+//# sourceMappingURL=handle-session.d.ts.map

package/dist/engine/handle-session.d.ts.map

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package/dist/engine/handle-session.js

@@ -0,0 +1,240 @@
+/**
+ * HandleSession - Handle-based document analysis session
+ *
+ * Wraps NucleusEngine with handle-based persistence for 97%+ token savings.
+ * Query results are stored in SQLite and only handle stubs are returned to the LLM.
+ */
+import { readFile } from "node:fs/promises";
+import { NucleusEngine } from "./nucleus-engine.js";
+import { SessionDB } from "../persistence/session-db.js";
+import { HandleRegistry } from "../persistence/handle-registry.js";
+import { HandleOps } from "../persistence/handle-ops.js";
+/**
+ * HandleSession - combines NucleusEngine with handle-based storage
+ */
+export class HandleSession {
+    engine;
+    db;
+    registry;
+    ops;
+    documentPath = "";
+    documentSize = 0;
+    loadedAt = null;
+    lastAccessedAt = null;
+    queryCount = 0;
+    constructor() {
+        this.engine = new NucleusEngine();
+        this.db = new SessionDB();
+        this.registry = new HandleRegistry(this.db);
+        this.ops = new HandleOps(this.db, this.registry);
+    }
+    /**
+     * Load a document from file
+     */
+    async loadFile(filePath) {
+        const content = await readFile(filePath, "utf-8");
+        return this.loadContent(content, filePath);
+    }
+    /**
+     * Load a document from string content
+     */
+    loadContent(content, path = "<string>") {
+        // Load into NucleusEngine for query execution
+        this.engine.loadContent(content);
+        // Also load into SessionDB for FTS5 search and handle storage
+        const lineCount = this.db.loadDocument(content);
+        this.documentPath = path;
+        this.documentSize = content.length;
+        this.loadedAt = new Date();
+        this.lastAccessedAt = new Date();
+        this.queryCount = 0;
+        return { lineCount, size: content.length };
+    }
+    /**
+     * Check if a document is loaded
+     */
+    isLoaded() {
+        return this.engine.isLoaded();
+    }
+    /**
+     * Get document statistics
+     */
+    getStats() {
+        const engineStats = this.engine.getStats();
+        if (!engineStats)
+            return null;
+        return {
+            path: this.documentPath,
+            lineCount: engineStats.lineCount,
+            size: this.documentSize,
+            loadedAt: this.loadedAt,
+        };
+    }
+    /**
+     * Execute a Nucleus query and return handle-based result
+     *
+     * Arrays are stored in SQLite and a handle stub is returned.
+     * Scalars are returned directly.
+     */
+    execute(command) {
+        this.lastAccessedAt = new Date();
+        this.queryCount++;
+        // Execute via NucleusEngine
+        const result = this.engine.execute(command);
+        if (!result.success) {
+            return {
+                success: false,
+                logs: result.logs,
+                error: result.error,
+                type: result.type,
+            };
+        }
+        // If result is an array, store in handle registry
+        if (Array.isArray(result.value)) {
+            const handle = this.registry.store(result.value);
+            this.registry.setResults(handle);
+            // Get the stub for LLM context
+            const stub = this.registry.getStub(handle);
+            return {
+                success: true,
+                handle,
+                stub,
+                logs: result.logs,
+                type: result.type,
+            };
+        }
+        // Scalar result - return directly
+        return {
+            success: true,
+            value: result.value,
+            logs: result.logs,
+            type: result.type,
+        };
+    }
+    /**
+     * Expand a handle to get full data
+     *
+     * Use this when the LLM needs to see actual data for decision-making.
+     */
+    expand(handle, options = {}) {
+        this.lastAccessedAt = new Date();
+        const data = this.registry.get(handle);
+        if (data === null) {
+            return {
+                success: false,
+                error: `Invalid handle: ${handle}`,
+            };
+        }
+        const total = data.length;
+        const offset = options.offset ?? 0;
+        const limit = options.limit ?? total;
+        // Slice the data
+        let sliced = data.slice(offset, offset + limit);
+        // Format if requested
+        if (options.format === "lines") {
+            sliced = sliced.map((item) => {
+                if (typeof item === "object" && item !== null) {
+                    const obj = item;
+                    // Extract line content
+                    const line = obj.line ?? obj.content ?? obj.text;
+                    if (line !== undefined) {
+                        const lineNum = obj.lineNum ?? obj.lineNumber ?? obj.num;
+                        if (lineNum !== undefined) {
+                            return `[${lineNum}] ${line}`;
+                        }
+                        return String(line);
+                    }
+                }
+                return item;
+            });
+        }
+        return {
+            success: true,
+            data: sliced,
+            total,
+            offset,
+            limit,
+        };
+    }
+    /**
+     * Get a preview of handle contents (first N items)
+     */
+    preview(handle, n = 5) {
+        this.lastAccessedAt = new Date();
+        return this.ops.preview(handle, n);
+    }
+    /**
+     * Get a random sample from a handle
+     */
+    sample(handle, n = 5) {
+        this.lastAccessedAt = new Date();
+        return this.ops.sample(handle, n);
+    }
+    /**
+     * Describe handle contents (schema + stats)
+     */
+    describe(handle) {
+        this.lastAccessedAt = new Date();
+        return this.ops.describe(handle);
+    }
+    /**
+     * Get current handle bindings as stubs
+     */
+    getBindings() {
+        const handles = this.registry.listHandles();
+        const bindings = {};
+        for (const handle of handles) {
+            bindings[handle] = this.registry.getStub(handle);
+        }
+        // Mark current RESULTS
+        const resultsHandle = this.registry.getResults();
+        if (resultsHandle) {
+            bindings["RESULTS"] = `-> ${resultsHandle}`;
+        }
+        return bindings;
+    }
+    /**
+     * Build context string with all handle stubs
+     */
+    buildContext() {
+        return this.registry.buildContext();
+    }
+    /**
+     * Reset bindings but keep document loaded
+     */
+    reset() {
+        // Clear handles
+        const handles = this.registry.listHandles();
+        for (const handle of handles) {
+            this.registry.delete(handle);
+        }
+        // Reset engine state
+        this.engine.reset();
+    }
+    /**
+     * Get session info
+     */
+    getSessionInfo() {
+        return {
+            documentPath: this.documentPath,
+            documentSize: this.documentSize,
+            loadedAt: this.loadedAt,
+            lastAccessedAt: this.lastAccessedAt,
+            queryCount: this.queryCount,
+            handleCount: this.registry.listHandles().length,
+        };
+    }
+    /**
+     * Close the session and free resources
+     */
+    close() {
+        this.db.close();
+    }
+    /**
+     * Get command reference
+     */
+    static getCommandReference() {
+        return NucleusEngine.getCommandReference();
+    }
+}
+//# sourceMappingURL=handle-session.js.map

package/dist/engine/handle-session.js.map

@@ -0,0 +1 @@
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package/dist/engine/nucleus-engine.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"nucleus-engine.d.ts","sourceRoot":"","sources":["../../src/engine/nucleus-engine.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAOH;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,OAAO,CAAC;IACjB,KAAK,EAAE,OAAO,CAAC;IACf,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,6BAA6B;IAC7B,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAqGD;;;;;;;;;;;;;;GAcG;AACH,qBAAa,aAAa;IACxB,OAAO,CAAC,OAAO,CAAc;IAC7B,OAAO,CAAC,QAAQ,CAAuB;IACvC,OAAO,CAAC,WAAW,CAA4B;IAC/C,OAAO,CAAC,OAAO,CAAU;IACzB,OAAO,CAAC,WAAW,CAAa;gBAEpB,OAAO,GAAE,oBAAyB;IAI9C;;OAEG;IACG,QAAQ,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAK/C;;OAEG;IACH,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI;IAYlC;;OAEG;IACH,QAAQ,IAAI,OAAO;IAInB;;OAEG;IACH,QAAQ,IAAI;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI;IAMxD;;;;;OAKG;IACH,OAAO,CAAC,OAAO,EAAE,MAAM,GAAG,eAAe;IAyEzC;;;;;OAKG;IACH,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,eAAe,EAAE;IAIjD;;OAEG;IACH,WAAW,IAAI,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;IAatC;;OAEG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAIjC;;OAEG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,GAAG,IAAI;IAI9C;;OAEG;IACH,KAAK,IAAI,IAAI;IAQb;;OAEG;IACH,UAAU,IAAI,MAAM;IAIpB;;OAEG;IACH,MAAM,CAAC,mBAAmB,IAAI,MAAM;CAgDrC;AAED;;GAEG;AACH,wBAAsB,YAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,oBAAoB,GAAG,OAAO,CAAC,aAAa,CAAC,CAI3G;AAED;;GAEG;AACH,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,oBAAoB,GAAG,aAAa,CAItG"}

package/dist/engine/nucleus-engine.js

@@ -316,10 +316,13 @@ SYNTHESIS:
   (synthesize (example "in1" out1) (example "in2" out2) ...)
                                 Synthesize function from examples
 
-VARIABLES:
+VARIABLES (for use in queries):
   RESULTS                       Last array result (auto-bound)
   _1, _2, _3, ...              Results from turn N (auto-bound)
   context                       Raw document content
+
+NOTE: $res1, $res2, etc. are handle stubs for lattice_expand only.
+      Use RESULTS or _1, _2, _3 to reference previous results in queries.
 `;
     }
 }

package/dist/engine/nucleus-engine.js.map

@@ -1 +1 @@
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package/dist/lattice-mcp-server.d.ts

@@ -1,20 +1,25 @@
 #!/usr/bin/env node
 /**
- * Lattice MCP Server
+ * Lattice MCP Server - Handle-Based Document Analysis
  *
- * A stateful document analysis tool for LLM agents with session lifecycle management.
- * Uses Nucleus S-expression syntax for queries.
+ * A stateful document analysis tool that achieves 97%+ token savings by
+ * storing results in SQLite and returning only handle references to the LLM.
+ *
+ * KEY CONCEPT:
+ * - Query results are stored server-side, LLM sees only compact stubs
+ * - Use lattice_expand when you need to see actual data for decision-making
+ * - Chain operations via RESULTS without transferring full datasets
  *
  * SESSION LIFECYCLE:
  * - Sessions auto-expire after inactivity (default: 10 minutes)
  * - Loading a new document closes the previous session
  * - Explicit lattice_close tool for cleanup
- * - Memory is freed when session ends
  *
  * Usage:
  *   1. lattice_load - Load a document (starts session)
- *   2. lattice_query - Run queries (resets inactivity timer)
- *   3. lattice_close - Explicitly end session (or wait for timeout)
+ *   2. lattice_query - Run queries (returns handle stubs, not full data)
+ *   3. lattice_expand - Get full data when you need to inspect results
+ *   4. lattice_close - End session
  */
 export {};
 //# sourceMappingURL=lattice-mcp-server.d.ts.map

package/dist/lattice-mcp-server.d.ts.map

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