matryoshka-rlm 0.2.13 → 0.2.14

package/LICENSE

@@ -1,21 +1,201 @@
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-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
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package/README.md

@@ -106,6 +106,10 @@ The LLM never writes JavaScript. It outputs Nucleus commands that Lattice execut
 | **Lattice Parser** | Parses S-expressions to AST |
 | **Lattice Solver** | Executes commands against document |
 | **In-Memory Handles** | Handle-based storage with FTS5 (97% token savings) |
+| **BM25 + Semantic** | Ranked keyword and TF-IDF cosine similarity search |
+| **RRF Fusion** | Reciprocal Rank Fusion for multi-signal search |
+| **Dampening** | Gravity dampening to remove false positives |
+| **Q-Value Reranker** | Learns which lines are useful across turns |
 | **miniKanren** | Relational engine for classification |
 | **RAG Hints** | Few-shot examples from past successes |
 
@@ -291,9 +295,29 @@ The model:
 ```scheme
 (grep "pattern")              ; Regex search, returns matches with line numbers
 (fuzzy_search "query" 10)     ; Fuzzy search, returns top N matches with scores
+(bm25 "query terms" 10)      ; BM25 ranked keyword search (TF-IDF scoring)
+(semantic "query terms" 10)   ; TF-IDF cosine similarity search
 (text_stats)                  ; Document metadata (length, line count, samples)
 ```
 
+### Multi-Signal Fusion & Ranking
+
+Combine results from multiple search operations for better relevance:
+
+```scheme
+;; Reciprocal Rank Fusion — merge results from different search signals
+(fuse (grep "ERROR") (bm25 "error handling") (semantic "failure"))
+
+;; Gravity dampening — halve scores for false positives lacking query term overlap
+(dampen (bm25 "database error") "database error")
+
+;; Q-value reranking — learns which lines are useful across turns
+(rerank (fuse (grep "ERROR") (bm25 "error")))
+
+;; Full pipeline: fuse → dampen → rerank
+(rerank (dampen (fuse (grep "ERROR") (bm25 "error") (semantic "failure")) "error"))
+```
+
 ### Symbol Operations (Code Files)
 
 For code files, Lattice uses tree-sitter to extract structural symbols. This enables code-aware queries that understand functions, classes, methods, and other language constructs.
@@ -557,7 +581,13 @@ src/
 │   ├── lc-parser.ts    # Nucleus parser
 │   ├── lc-solver.ts    # Command executor (uses miniKanren)
 │   ├── type-inference.ts
-│   └── constraint-resolver.ts
+│   ├── constraint-resolver.ts
+│   ├── bm25.ts         # BM25 keyword search (from Ori-Mnemos)
+│   ├── semantic.ts     # TF-IDF cosine similarity search
+│   ├── rrf.ts          # Reciprocal Rank Fusion (from Ori-Mnemos)
+│   ├── dampening.ts    # Gravity dampening (from Ori-Mnemos)
+│   ├── qvalue.ts       # Q-value learning reranker (from Ori-Mnemos)
+│   └── stopwords.ts    # Shared stopword set
 ├── persistence/        # In-memory handle storage (97% token savings)
 │   ├── session-db.ts   # In-memory SQLite with FTS5
 │   ├── handle-registry.ts  # Handle creation and stubs
@@ -583,6 +613,7 @@ src/
 
 This project incorporates ideas and code from:
 
+- **[Ori-Mnemos](https://github.com/aayoawoyemi/Ori-Mnemos)** - A persistent memory infrastructure for AI agents implementing the Recursive Memory Harness framework. BM25 search, Reciprocal Rank Fusion, gravity dampening, and Q-value learning reranking were ported from Ori-Mnemos and adapted for line-based document analysis.
 - **[Nucleus](https://github.com/michaelwhitford/nucleus)** - A symbolic S-expression language by Michael Whitford. RLM uses Nucleus syntax for the constrained DSL that the LLM outputs, providing a rigid grammar that reduces model errors.
 - **[ramo](https://github.com/wjlewis/ramo)** - A miniKanren implementation in TypeScript by Will Lewis. Used for constraint-based program synthesis.
 - **[Barliman](https://github.com/webyrd/Barliman)** - A prototype smart editor by William Byrd and Greg Rosenblatt that uses program synthesis to assist programmers. The Barliman-style approach of providing input/output constraints instead of code inspired the synthesis workflow.

package/dist/adapters/nucleus.js

@@ -181,7 +181,7 @@ function extractCode(response) {
     }
     // Check for plain S-expression in raw text
     // Find opening paren and balance to closing
-    const KNOWN_COMMANDS = ["grep", "filter", "map", "reduce", "count", "sum", "lines", "fuzzy_search", "text_stats", "match", "replace", "split", "parseInt", "parseFloat", "parseDate", "parseCurrency", "parseNumber", "coerce", "extract", "synthesize", "lambda", "if", "classify", "predicate", "define-fn", "apply-fn", "list_symbols", "get_symbol_body", "find_references"];
+    const KNOWN_COMMANDS = ["grep", "filter", "map", "reduce", "count", "sum", "lines", "fuzzy_search", "bm25", "semantic", "fuse", "dampen", "rerank", "text_stats", "match", "replace", "split", "parseInt", "parseFloat", "parseDate", "parseCurrency", "parseNumber", "coerce", "extract", "synthesize", "lambda", "if", "classify", "predicate", "define-fn", "apply-fn", "list_symbols", "get_symbol_body", "find_references"];
     const MAX_SEXP_ITERATIONS = 200;
     let sexpIterations = 0;
     let searchFrom = firstParen;

package/dist/adapters/nucleus.js.map

@@ -1 +1 @@
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package/dist/engine/nucleus-engine.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"nucleus-engine.d.ts","sourceRoot":"","sources":["../../src/engine/nucleus-engine.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AASH;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,OAAO,CAAC;IACjB,KAAK,EAAE,OAAO,CAAC;IACf,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,6BAA6B;IAC7B,OAAO,CAAC,EAAE,OAAO,CAAC;CACnB;AAgJD;;;;;;;;;;;;;;GAcG;AACH,qBAAa,aAAa;IACxB,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,iBAAiB,CAAO;IAChD,OAAO,CAAC,OAAO,CAAc;IAC7B,OAAO,CAAC,QAAQ,CAAuB;IACvC,OAAO,CAAC,WAAW,CAA4B;IAC/C,OAAO,CAAC,OAAO,CAAU;IACzB,OAAO,CAAC,WAAW,CAAa;gBAEpB,OAAO,GAAE,oBAAyB;IAI9C;;OAEG;IACG,QAAQ,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAK/C;;OAEG;IACH,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI;IAalC;;OAEG;IACH,QAAQ,IAAI,OAAO;IAInB;;OAEG;IACH,QAAQ,IAAI;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI;IAMxD;;;;;OAKG;IACH,OAAO,CAAC,OAAO,EAAE,MAAM,GAAG,eAAe;IA8EzC;;OAEG;IACH,OAAO,CAAC,oBAAoB;IAiB5B;;;;;OAKG;IACH,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,eAAe,EAAE;IAIjD;;OAEG;IACH,WAAW,IAAI,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;IAetC;;OAEG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAIjC;;OAEG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,GAAG,IAAI;IAO9C;;OAEG;IACH,KAAK,IAAI,IAAI;IAQb,OAAO,IAAI,IAAI;IAOf;;OAEG;IACH,UAAU,IAAI,MAAM;IAIpB;;OAEG;IACH,MAAM,CAAC,mBAAmB,IAAI,MAAM;CAoErC;AAED;;GAEG;AACH,wBAAsB,YAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,oBAAoB,GAAG,OAAO,CAAC,aAAa,CAAC,CAI3G;AAED;;GAEG;AACH,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,oBAAoB,GAAG,aAAa,CAItG"}

package/dist/engine/nucleus-engine.js

@@ -11,6 +11,8 @@ import { readFile } from "node:fs/promises";
 import { parse as parseLC } from "../logic/lc-parser.js";
 import { inferType, typeToString } from "../logic/type-inference.js";
 import { solve as solveTerm, validateRegex } from "../logic/lc-solver.js";
+import { buildBM25Index, searchBM25 } from "../logic/bm25.js";
+import { buildSemanticIndex, searchSemantic } from "../logic/semantic.js";
 /**
  * Create SolverTools from document content
  */
@@ -118,6 +120,24 @@ function createSolverTools(context) {
             });
             return results.slice(0, clampedLimit);
         },
+        bm25: (() => {
+            let index = null;
+            return (query, limit = 10) => {
+                if (!index) {
+                    index = buildBM25Index(lines);
+                }
+                return searchBM25(query, lines, index, undefined, limit);
+            };
+        })(),
+        semantic: (() => {
+            let index = null;
+            return (query, limit = 10) => {
+                if (!index) {
+                    index = buildSemanticIndex(lines);
+                }
+                return searchSemantic(query, lines, index, limit);
+            };
+        })(),
         text_stats: () => ({ ...textStats }),
     };
 }
@@ -356,6 +376,8 @@ Nucleus Command Reference
 SEARCH OPERATIONS (impure - access document):
   (grep "pattern")              Search for regex pattern, returns matches
   (fuzzy_search "query" limit)  Fuzzy search, returns top matches by relevance
+  (bm25 "query" limit)          BM25 ranked keyword search, returns by relevance
+  (semantic "query" limit)      TF-IDF cosine similarity search, semantic ranking
   (text_stats)                  Get document statistics
   (lines start end)             Get lines in range (1-indexed)
 
@@ -366,6 +388,14 @@ SYMBOL OPERATIONS (requires tree-sitter - .ts, .js, .py, .go, .md, etc.):
   (get_symbol_body RESULTS)     Get source code body for symbol from previous query
   (find_references "name")      Find all references to an identifier
 
+FUSION:
+  (fuse expr1 expr2 ...)        Fuse results from multiple searches using RRF
+                                Example: (fuse (grep "ERROR") (bm25 "error handling"))
+  (dampen results "query")      Remove false positives by checking term overlap
+                                Example: (dampen (bm25 "error") "database error")
+  (rerank results)              Rerank using Q-value learning (learns across turns)
+                                Example: (rerank (fuse (grep "ERROR") (bm25 "error")))
+
 COLLECTION OPERATIONS (pure - work on RESULTS):
   (filter RESULTS pred)         Keep items matching predicate
   (map RESULTS transform)       Transform each item

package/dist/engine/nucleus-engine.js.map

@@ -1 +1 @@
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package/dist/logic/bm25.d.ts

@@ -0,0 +1,28 @@
+/**
+ * BM25 search for Nucleus
+ *
+ * Ported from Ori-Mnemos (src/core/bm25.ts) and adapted for
+ * line-based document search instead of vault-based note search.
+ *
+ * BM25 (Best Matching 25) is a ranking function used by search engines
+ * to estimate relevance of documents to a given search query.
+ */
+export interface BM25Index {
+    termFreqs: Map<string, Map<number, number>>;
+    docLengths: Map<number, number>;
+    avgDocLength: number;
+    docCount: number;
+}
+export interface BM25Config {
+    k1: number;
+    b: number;
+}
+export interface BM25Result {
+    line: string;
+    lineNum: number;
+    score: number;
+}
+export declare function tokenize(text: string): string[];
+export declare function buildBM25Index(lines: string[]): BM25Index;
+export declare function searchBM25(query: string, lines: string[], index: BM25Index, config?: BM25Config, limit?: number): BM25Result[];
+//# sourceMappingURL=bm25.d.ts.map

package/dist/logic/bm25.d.ts.map

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package/dist/logic/bm25.js

@@ -0,0 +1,90 @@
+/**
+ * BM25 search for Nucleus
+ *
+ * Ported from Ori-Mnemos (src/core/bm25.ts) and adapted for
+ * line-based document search instead of vault-based note search.
+ *
+ * BM25 (Best Matching 25) is a ranking function used by search engines
+ * to estimate relevance of documents to a given search query.
+ */
+import { STOPWORDS } from "./stopwords.js";
+// ── Default config (from Ori-Mnemos) ────────────────────────────────
+const DEFAULT_BM25 = {
+    k1: 1.2,
+    b: 0.75,
+};
+// ── Tokenizer (from Ori-Mnemos) ─────────────────────────────────────
+export function tokenize(text) {
+    return text
+        .toLowerCase()
+        .split(/[^a-z0-9]+/)
+        .filter((t) => t.length >= 2 && !STOPWORDS.has(t));
+}
+// ── Build index from document lines ─────────────────────────────────
+export function buildBM25Index(lines) {
+    const termFreqs = new Map();
+    const docLengths = new Map();
+    for (let i = 0; i < lines.length; i++) {
+        const lineNum = i + 1; // 1-indexed
+        const tokens = tokenize(lines[i]);
+        // Count term frequencies for this line
+        const bag = new Map();
+        for (const t of tokens) {
+            bag.set(t, (bag.get(t) ?? 0) + 1);
+        }
+        docLengths.set(lineNum, tokens.length);
+        // Populate inverted index
+        for (const [term, count] of bag) {
+            let lineMap = termFreqs.get(term);
+            if (!lineMap) {
+                lineMap = new Map();
+                termFreqs.set(term, lineMap);
+            }
+            lineMap.set(lineNum, count);
+        }
+    }
+    const totalLength = Array.from(docLengths.values()).reduce((a, b) => a + b, 0);
+    const avgDocLength = lines.length > 0 ? totalLength / lines.length : 0;
+    return {
+        termFreqs,
+        docLengths,
+        avgDocLength,
+        docCount: lines.length,
+    };
+}
+// ── BM25 search (scoring from Ori-Mnemos) ───────────────────────────
+export function searchBM25(query, lines, index, config = DEFAULT_BM25, limit = 10) {
+    const queryTokens = tokenize(query);
+    if (queryTokens.length === 0)
+        return [];
+    const { termFreqs, docLengths, avgDocLength, docCount } = index;
+    const { k1, b } = config;
+    const N = docCount;
+    // Collect scores per line
+    const scores = new Map();
+    for (const term of queryTokens) {
+        const lineMap = termFreqs.get(term);
+        if (!lineMap)
+            continue;
+        const n = lineMap.size; // lines containing term
+        const idf = Math.log((N - n + 0.5) / (n + 0.5) + 1);
+        for (const [lineNum, tf] of lineMap) {
+            const dl = docLengths.get(lineNum) ?? 0;
+            const tfNorm = (tf * (k1 + 1)) / (tf + k1 * (1 - b + b * (dl / avgDocLength)));
+            const termScore = idf * tfNorm;
+            scores.set(lineNum, (scores.get(lineNum) ?? 0) + termScore);
+        }
+    }
+    // Build result array, sort by score, limit
+    const results = [];
+    for (const [lineNum, score] of scores) {
+        results.push({
+            line: lines[lineNum - 1] ?? "",
+            lineNum,
+            score,
+        });
+    }
+    results.sort((a, b) => b.score - a.score);
+    return results.slice(0, limit);
+}
+//# sourceMappingURL=bm25.js.map

package/dist/logic/bm25.js.map

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