maestro-flow 0.5.47 → 0.5.49

package/dist/src/search/daemon.js.map

@@ -1 +1 @@
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+{"version":3,"file":"daemon.js","sourceRoot":"","sources":["../../../src/search/daemon.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAE,YAAY,EAAe,MAAM,UAAU,CAAC;AACrD,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACnD,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACpD,OAAO,EAAE,WAAW,EAA0B,MAAM,yCAAyC,CAAC;AAG9F,OAAO,EAAE,aAAa,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAEjF,OAAO,EAAE,aAAa,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAGjF,MAAM,eAAe,GAAG,EAAE,GAAG,EAAE,GAAG,IAAI,CAAC;AACvC,MAAM,iBAAiB,GAAG,MAAM,CAAC;AACjC,MAAM,aAAa,GAAG,EAAE,GAAG,IAAI,CAAC;AAChC,MAAM,eAAe,GAAG,EAAE,CAAC;AAE3B,2EAA2E;AAE3E,MAAM,CAAC,KAAK,UAAU,WAAW,CAC/B,YAAoB,EACpB,MAAyB;IAEzB,MAAM,QAAQ,GAAG,cAAc,CAAC,YAAY,CAAC,CAAC;IAC9C,IAAI,QAAQ,IAAI,aAAa,CAAC,QAAQ,CAAC,EAAE,CAAC;QACxC,MAAM,IAAI,KAAK,CAAC,+BAA+B,QAAQ,CAAC,GAAG,UAAU,QAAQ,CAAC,IAAI,GAAG,CAAC,CAAC;IACzF,CAAC;IAED,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAC;IAExC,MAAM,OAAO,CAAC,OAAO,EAAE,CAAC;IAExB,IAAI,SAAS,GAAyC,IAAI,CAAC;IAC3D,MAAM,SAAS,GAAG,CAAC,MAAc,EAAE,EAAE;QACnC,IAAI,SAAS;YAAE,YAAY,CAAC,SAAS,CAAC,CAAC;QACvC,SAAS,GAAG,UAAU,CAAC,GAAG,EAAE,GAAG,QAAQ,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC,CAAC,CAAC,EAAE,eAAe,CAAC,CAAC;IACrF,CAAC,CAAC;IAEF,IAAI,iBAAiB,GAAG,CAAC,CAAC;IAE1B,MAAM,MAAM,GAAG,YAAY,CAAC,CAAC,MAAM,EAAE,EAAE;QACrC,IAAI,iBAAiB,IAAI,eAAe,EAAE,CAAC;YACzC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,sBAAsB,EAAE,CAAC,GAAG,IAAI,CAAC,CAAC;YAChF,OAAO;QACT,CAAC;QACD,iBAAiB,EAAE,CAAC;QACpB,MAAM,CAAC,UAAU,CAAC,iBAAiB,CAAC,CAAC;QAErC,IAAI,GAAG,GAAG,EAAE,CAAC;QACb,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,KAAK,EAAE,EAAE;YAC1B,GAAG,IAAI,KAAK,CAAC,QAAQ,EAAE,CAAC;YACxB,IAAI,GAAG,CAAC,MAAM,GAAG,aAAa,EAAE,CAAC;gBAC/B,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,mBAAmB,EAAE,CAAC,GAAG,IAAI,CAAC,CAAC;gBAC7E,OAAO;YACT,CAAC;YACD,MAAM,KAAK,GAAG,GAAG,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;YAChC,IAAI,KAAK,KAAK,CAAC,CAAC;gBAAE,OAAO;YACzB,MAAM,IAAI,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;YACjC,GAAG,GAAG,GAAG,CAAC,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;YAC3B,aAAa,CAAC,IAAI,EAAE,OAAO,EAAE,MAAM,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE;gBAC7C,SAAS,CAAC,MAAM,CAAC,CAAC;YACpB,CAAC,CAAC,CAAC;QACL,CAAC,CAAC,CAAC;QACH,MAAM,CAAC,EAAE,CAAC,SAAS,EAAE,GAAG,EAAE,GAAG,MAAM,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QAClD,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,GAAG,EAAE,GAAG,MAAM,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QAChD,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,GAAG,EAAE,GAAG,iBAAiB,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;IACrD,CAAC,CAAC,CAAC;IAEH,OAAO,CAAC,iBAAiB,EAAE,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,CAAC;IAE9C,OAAO,IAAI,OAAO,CAAC,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE;QACjC,MAAM,CAAC,MAAM,CAAC,CAAC,EAAE,WAAW,EAAE,GAAG,EAAE;YACjC,MAAM,IAAI,GAAG,MAAM,CAAC,OAAO,EAAE,CAAC;YAC9B,IAAI,CAAC,IAAI,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;gBAAC,MAAM,CAAC,IAAI,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC;gBAAC,OAAO;YAAC,CAAC;YACjF,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC;YACvB,MAAM,IAAI,GAAe,EAAE,GAAG,EAAE,OAAO,CAAC,GAAG,EAAE,IAAI,EAAE,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,EAAE,CAAC;YACzF,aAAa,CAAC,aAAa,CAAC,YAAY,CAAC,EAAE,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC;YACjE,IAAI,CAAC;gBAAC,UAAU,CAAC,IAAI,CAAC,YAAY,EAAE,wBAAwB,CAAC,CAAC,CAAC;YAAC,CAAC;YAAC,MAAM,CAAC,CAAA,CAAC;YAC1E,SAAS,CAAC,MAAM,CAAC,CAAC;YAClB,GAAG,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC;QACxB,CAAC,CAAC,CAAC;QACH,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC7B,CAAC,CAAC,CAAC;AACL,CAAC;AAED,KAAK,UAAU,aAAa,CAC1B,IAAY,EACZ,OAAoB,EACpB,MAAiC;IAEjC,IAAI,IAA0B,CAAC;IAC/B,IAAI,CAAC;QACH,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAwB,CAAC;QACpD,IAAI,GAAG,CAAC,MAAM,KAAK,QAAQ,EAAE,CAAC;YAC5B,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,MAAM,OAAO,CAAC,cAAc,CAC5E,GAAG,CAAC,KAAM,EAAE,GAAG,CAAC,KAAM,EAAE,EAAE,aAAa,EAAE,GAAG,CAAC,aAAa,EAAE,CAC7D,CAAC;YACF,IAAI,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,OAAO,EAAE,aAAa,EAAE,aAAa,EAAE,CAAC;QAC7D,CAAC;aAAM,IAAI,GAAG,CAAC,MAAM,KAAK,YAAY,EAAE,CAAC;YACvC,OAAO,CAAC,UAAU,EAAE,CAAC;YACrB,MAAM,OAAO,CAAC,OAAO,EAAE,CAAC;YACxB,OAAO,CAAC,iBAAiB,EAAE,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,CAAC;YAC9C,IAAI,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC;QACtB,CAAC;aAAM,CAAC;YACN,IAAI,GAAG,EAAE,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,gBAAgB,EAAE,CAAC;QAChD,CAAC;IACH,CAAC;IAAC,OAAO,CAAU,EAAE,CAAC;QACpB,IAAI,GAAG,EAAE,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC;IAC1E,CAAC;IACD,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,CAAC;AAC1C,CAAC;AAED,SAAS,QAAQ,CAAC,MAAc,EAAE,YAAoB;IACpD,IAAI,CAAC;QAAC,UAAU,CAAC,aAAa,CAAC,YAAY,CAAC,CAAC,CAAC;IAAC,CAAC;IAAC,MAAM,CAAC,CAAA,CAAC;IACzD,MAAM,CAAC,KAAK,EAAE,CAAC;IACf,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AAClB,CAAC;AAED,2EAA2E;AAE3E,MAAM,UAAU,UAAU,CAAC,YAAoB;IAC7C,MAAM,IAAI,GAAG,cAAc,CAAC,YAAY,CAAC,CAAC;IAC1C,IAAI,CAAC,IAAI;QAAE,OAAO,KAAK,CAAC;IACxB,IAAI,CAAC;QAAC,UAAU,CAAC,aAAa,CAAC,YAAY,CAAC,CAAC,CAAC;IAAC,CAAC;IAAC,MAAM,CAAC,CAAA,CAAC;IACzD,IAAI,aAAa,CAAC,IAAI,CAAC,EAAE,CAAC;QACxB,IAAI,CAAC;YAAC,OAAO,CAAC,IAAI,CAAC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package/dist/src/tools/spec-conflict-marker.d.ts

@@ -52,4 +52,66 @@ export declare function clearAllConflicts(projectPath: string, file: string, new
     cleared: number;
     errors: string[];
 };
+export interface EvolutionLink {
+    sid: string;
+    file: string;
+    title: string;
+    status: ConfidenceLevel | 'active' | 'deprecated' | string;
+    date: string;
+    current: boolean;
+}
+/**
+ * Mark the entry identified by `oldSid` as superseded by `newSid`:
+ * sets `status="deprecated"` + `superseded-by="<newSid>"` on its tag line.
+ *
+ * Locates the entry by matching the `sid="..."` attribute directly on the
+ * `<spec-entry>` opening line, so it is immune to frontmatter/line-number
+ * drift (unlike the line-based conflict marker).
+ */
+export declare function supersedeEntry(projectPath: string, oldSid: string, newSid: string): MarkResult;
+/**
+ * Reconstruct the full evolution chain (oldest → newest) that `sid` belongs to.
+ * Walks `supersedes` backward to the root and `superseded-by` forward to the
+ * head. Returns an ordered list; empty when `sid` is unknown.
+ */
+export declare function getEvolutionChain(projectPath: string, sid: string): EvolutionLink[];
+export interface SpecHealthReport {
+    total: number;
+    active: number;
+    deprecated: number;
+    contested: number;
+    lowConfidence: number;
+    withSid: number;
+    withoutSid: number;
+    /** Number of evolution chains with more than one version. */
+    chains: number;
+    /** Entries whose `supersedes` points at a sid that no longer exists. */
+    danglingSupersedes: Array<{
+        sid: string;
+        target: string;
+        file: string;
+    }>;
+    /** sids participating in a supersedes cycle. */
+    cyclicSids: string[];
+    /** Mean time-decay factor across active entries (1 = all fresh, →floor = stale). */
+    avgFreshness: number;
+    /** Active entries whose freshness has decayed below the 0.5 warning threshold. */
+    staleActive: number;
+}
+/**
+ * Compute a knowledge-health report over all spec entries.
+ *
+ * Read-only observability for the gardener: it never mutates files — low
+ * freshness is *reported*, not auto-downgraded (that stays a human/audit call,
+ * keeping confidence and time-decay as separate concerns).
+ */
+export declare function analyzeSpecHealth(projectPath: string, nowMs?: number): SpecHealthReport;
+/**
+ * Assign a stable `sid` to every `<spec-entry>` that lacks one. Legacy entries
+ * predate the identity scheme; backfilling lets them join supersession chains.
+ * Idempotent — entries that already carry a sid are skipped.
+ */
+export declare function backfillSids(projectPath: string, now?: Date): {
+    updated: number;
+};
 //# sourceMappingURL=spec-conflict-marker.d.ts.map

package/dist/src/tools/spec-conflict-marker.d.ts.map

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package/dist/src/tools/spec-conflict-marker.js

@@ -11,8 +11,9 @@
  */
 import { readFileSync, writeFileSync, readdirSync, existsSync } from 'node:fs';
 import { join } from 'node:path';
-import { parseSpecEntries, VALID_CONFIDENCE_LEVELS } from './spec-entry-parser.js';
+import { parseSpecEntries, generateSid, VALID_CONFIDENCE_LEVELS } from './spec-entry-parser.js';
 import { stripFrontmatter } from '../utils/frontmatter.js';
+import { computeDecayFactor } from '../graph/kg/credibility.js';
 // ============================================================================
 // Marker ID generation
 // ============================================================================
@@ -207,6 +208,284 @@ export function clearAllConflicts(projectPath, file, newConfidence) {
     }
     return { cleared, errors };
 }
+/**
+ * Mark the entry identified by `oldSid` as superseded by `newSid`:
+ * sets `status="deprecated"` + `superseded-by="<newSid>"` on its tag line.
+ *
+ * Locates the entry by matching the `sid="..."` attribute directly on the
+ * `<spec-entry>` opening line, so it is immune to frontmatter/line-number
+ * drift (unlike the line-based conflict marker).
+ */
+export function supersedeEntry(projectPath, oldSid, newSid) {
+    const root = join(projectPath, '.workflow', 'specs');
+    if (!existsSync(root))
+        return { success: false, error: 'No specs directory' };
+    let files;
+    try {
+        files = readdirSync(root).filter(f => f.endsWith('.md'));
+    }
+    catch {
+        return { success: false, error: 'Cannot read specs directory' };
+    }
+    // Establish the link bidirectionally in one pass: mark the old entry
+    // deprecated + superseded-by, and stamp `supersedes` onto the new entry so
+    // the evolution chain (which walks `supersedes`) reconstructs correctly.
+    let oldFound = false;
+    for (const file of files) {
+        const filePath = join(root, file);
+        let content;
+        try {
+            content = readFileSync(filePath, 'utf-8');
+        }
+        catch {
+            continue;
+        }
+        const lines = content.split('\n');
+        let changed = false;
+        for (let i = 0; i < lines.length; i++) {
+            const line = lines[i];
+            if (!line.includes('<spec-entry'))
+                continue;
+            if (line.includes(`sid="${oldSid}"`)) {
+                let updated = upsertAttribute(line, 'status', 'deprecated');
+                updated = upsertAttribute(updated, 'superseded-by', newSid);
+                lines[i] = updated;
+                oldFound = true;
+                changed = true;
+            }
+            else if (line.includes(`sid="${newSid}"`)) {
+                lines[i] = upsertAttribute(line, 'supersedes', oldSid);
+                changed = true;
+            }
+        }
+        if (changed)
+            writeFileSync(filePath, lines.join('\n'), 'utf-8');
+    }
+    if (!oldFound)
+        return { success: false, error: `sid not found: ${oldSid}` };
+    return { success: true };
+}
+/**
+ * Reconstruct the full evolution chain (oldest → newest) that `sid` belongs to.
+ * Walks `supersedes` backward to the root and `superseded-by` forward to the
+ * head. Returns an ordered list; empty when `sid` is unknown.
+ */
+export function getEvolutionChain(projectPath, sid) {
+    const root = join(projectPath, '.workflow', 'specs');
+    if (!existsSync(root))
+        return [];
+    let files;
+    try {
+        files = readdirSync(root).filter(f => f.endsWith('.md'));
+    }
+    catch {
+        return [];
+    }
+    const bySid = new Map();
+    for (const file of files) {
+        let raw;
+        try {
+            raw = readFileSync(join(root, file), 'utf-8');
+        }
+        catch {
+            continue;
+        }
+        const { entries } = parseSpecEntries(stripFrontmatter(raw));
+        for (const e of entries) {
+            if (e.sid)
+                bySid.set(e.sid, { entry: e, file });
+        }
+    }
+    if (!bySid.has(sid))
+        return [];
+    // Walk backward to the oldest ancestor via `supersedes`.
+    let rootSid = sid;
+    const guardBack = new Set();
+    while (true) {
+        if (guardBack.has(rootSid))
+            break; // cycle guard
+        guardBack.add(rootSid);
+        const node = bySid.get(rootSid);
+        const prev = node?.entry.supersedes;
+        if (prev && bySid.has(prev))
+            rootSid = prev;
+        else
+            break;
+    }
+    // Forward adjacency comes from `supersedes` (declared when the newer entry is
+    // created — the authoritative pointer) rather than `superseded-by` (a
+    // post-hoc marker that may lag): if entry E supersedes X, X's successor is E.
+    const successorOf = new Map();
+    for (const [sidKey, node] of bySid) {
+        const prev = node.entry.supersedes;
+        if (prev)
+            successorOf.set(prev, sidKey);
+    }
+    const chain = [];
+    const guardFwd = new Set();
+    let cur = rootSid;
+    while (cur && bySid.has(cur) && !guardFwd.has(cur)) {
+        guardFwd.add(cur);
+        const node = bySid.get(cur);
+        chain.push({
+            sid: cur,
+            file: node.file,
+            title: node.entry.title,
+            status: node.entry.status ?? node.entry.confidence ?? 'active',
+            date: node.entry.date,
+            current: false,
+        });
+        cur = successorOf.get(cur);
+    }
+    // The chain head (newest version) is current, regardless of whether the
+    // deprecated markers have been synced onto the older entries yet.
+    if (chain.length > 0)
+        chain[chain.length - 1].current = true;
+    return chain;
+}
+/**
+ * Compute a knowledge-health report over all spec entries.
+ *
+ * Read-only observability for the gardener: it never mutates files — low
+ * freshness is *reported*, not auto-downgraded (that stays a human/audit call,
+ * keeping confidence and time-decay as separate concerns).
+ */
+export function analyzeSpecHealth(projectPath, nowMs = Date.now()) {
+    const root = join(projectPath, '.workflow', 'specs');
+    const report = {
+        total: 0, active: 0, deprecated: 0, contested: 0, lowConfidence: 0,
+        withSid: 0, withoutSid: 0, chains: 0,
+        danglingSupersedes: [], cyclicSids: [], avgFreshness: 1, staleActive: 0,
+    };
+    if (!existsSync(root))
+        return report;
+    let files;
+    try {
+        files = readdirSync(root).filter(f => f.endsWith('.md'));
+    }
+    catch {
+        return report;
+    }
+    const all = [];
+    for (const file of files) {
+        let raw;
+        try {
+            raw = readFileSync(join(root, file), 'utf-8');
+        }
+        catch {
+            continue;
+        }
+        const { entries } = parseSpecEntries(stripFrontmatter(raw));
+        for (const e of entries)
+            all.push({ entry: e, file });
+    }
+    const bySid = new Map();
+    for (const { entry } of all)
+        if (entry.sid)
+            bySid.set(entry.sid, entry);
+    let freshnessSum = 0;
+    for (const { entry, file } of all) {
+        report.total++;
+        if (entry.sid)
+            report.withSid++;
+        else
+            report.withoutSid++;
+        if (entry.confidence === 'contested')
+            report.contested++;
+        if (entry.confidence === 'low')
+            report.lowConfidence++;
+        if (entry.status === 'deprecated') {
+            report.deprecated++;
+        }
+        else {
+            report.active++;
+            const parsed = entry.date ? Date.parse(entry.date) : NaN;
+            const freshness = Number.isNaN(parsed)
+                ? 1
+                : computeDecayFactor(Math.max(0, (nowMs - parsed) / 86_400_000), 'spec');
+            freshnessSum += freshness;
+            if (freshness < 0.5)
+                report.staleActive++;
+        }
+        if (entry.supersedes && !bySid.has(entry.supersedes) && entry.sid) {
+            report.danglingSupersedes.push({ sid: entry.sid, target: entry.supersedes, file });
+        }
+    }
+    report.avgFreshness = report.active > 0 ? freshnessSum / report.active : 1;
+    // Count chains: a chain is anchored by its oldest root — an entry that has
+    // been superseded (someone points `supersedes` at it) but itself supersedes
+    // nothing. Each multi-version chain has exactly one such root.
+    const isSuperseded = new Set();
+    for (const { entry } of all)
+        if (entry.supersedes)
+            isSuperseded.add(entry.supersedes);
+    for (const sid of bySid.keys()) {
+        if (isSuperseded.has(sid) && !declaresSupersedes(bySid, sid))
+            report.chains++;
+    }
+    // Detect supersedes cycles by walking each sid's chain until it repeats.
+    const cyclic = new Set();
+    for (const startSid of bySid.keys()) {
+        const seen = new Set();
+        let cur = startSid;
+        while (cur && bySid.has(cur)) {
+            if (seen.has(cur)) {
+                for (const s of seen)
+                    cyclic.add(s);
+                break;
+            }
+            seen.add(cur);
+            cur = bySid.get(cur).supersedes;
+        }
+    }
+    report.cyclicSids = [...cyclic];
+    return report;
+}
+/** True when `sid` itself declares a `supersedes` (i.e. it is not a chain root). */
+function declaresSupersedes(bySid, sid) {
+    return !!bySid.get(sid)?.supersedes;
+}
+/**
+ * Assign a stable `sid` to every `<spec-entry>` that lacks one. Legacy entries
+ * predate the identity scheme; backfilling lets them join supersession chains.
+ * Idempotent — entries that already carry a sid are skipped.
+ */
+export function backfillSids(projectPath, now = new Date()) {
+    const root = join(projectPath, '.workflow', 'specs');
+    if (!existsSync(root))
+        return { updated: 0 };
+    let files;
+    try {
+        files = readdirSync(root).filter(f => f.endsWith('.md'));
+    }
+    catch {
+        return { updated: 0 };
+    }
+    let updated = 0;
+    for (const file of files) {
+        const filePath = join(root, file);
+        let content;
+        try {
+            content = readFileSync(filePath, 'utf-8');
+        }
+        catch {
+            continue;
+        }
+        const lines = content.split('\n');
+        let changed = false;
+        for (let i = 0; i < lines.length; i++) {
+            const line = lines[i];
+            if (line.includes('<spec-entry') && !/\bsid="/.test(line)) {
+                lines[i] = upsertAttribute(line, 'sid', generateSid(now));
+                changed = true;
+                updated++;
+            }
+        }
+        if (changed)
+            writeFileSync(filePath, lines.join('\n'), 'utf-8');
+    }
+    return { updated };
+}
 // ============================================================================
 // Attribute manipulation helpers
 // ============================================================================

package/dist/src/tools/spec-conflict-marker.js.map

@@ -1 +1 @@
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package/dist/src/tools/spec-entry-parser.d.ts

@@ -6,6 +6,18 @@
  */
 export type ConfidenceLevel = 'high' | 'medium' | 'low' | 'contested';
 export declare const VALID_CONFIDENCE_LEVELS: readonly ConfidenceLevel[];
+/**
+ * Lifecycle status of a spec entry.
+ * - `active` (default): live knowledge, injected and searchable normally.
+ * - `deprecated`: superseded by a newer entry; excluded from search/load by
+ *   default but preserved for the evolution chain (see `superseded-by`).
+ *
+ * Orthogonal to `confidence`: status = "is this the current version",
+ * confidence = "is this content trusted/contested". A deprecated entry can
+ * still have had high confidence; a contested entry is still active.
+ */
+export type SpecStatus = 'active' | 'deprecated';
+export declare const VALID_STATUS: readonly SpecStatus[];
 export interface SpecEntryParsed {
     category: string;
     keywords: string[];
@@ -17,6 +29,14 @@ export interface SpecEntryParsed {
     confidence?: ConfidenceLevel;
     conflictMarker?: string;
     conflictNote?: string;
+    /** Stable identity (S-YYYYMMDD-xxxx), survives line-number drift. Anchors the evolution chain. */
+    sid?: string;
+    /** sid of the entry this one replaces (this is the newer version). */
+    supersedes?: string;
+    /** sid of the entry that replaced this one (this is the older version). */
+    supersededBy?: string;
+    /** Lifecycle status; absent = active. */
+    status?: SpecStatus;
     title: string;
     content: string;
     lineStart: number;
@@ -57,9 +77,30 @@ export declare function validateCategoryMatch(entry: SpecEntryParsed, fileCatego
  * If keyword provided, highlights matched entries.
  */
 export declare function formatSpecEntries(entries: SpecEntryParsed[], keyword?: string): string;
+/**
+ * Lifecycle metadata for a spec entry. Passed as an options bag to
+ * `formatNewEntry` so the evolution chain can be written without exploding the
+ * positional parameter list.
+ */
+export interface SpecEntryLifecycle {
+    /** Stable identity; if omitted, none is written (legacy behavior). */
+    sid?: string;
+    /** sid of the entry this one replaces. */
+    supersedes?: string;
+    /** sid of the entry that replaced this one. */
+    supersededBy?: string;
+    /** Lifecycle status; `active` (or omitted) writes no attribute. */
+    status?: SpecStatus;
+}
+/**
+ * Generate a stable spec-entry identity: `S-YYYYMMDD-xxxx`.
+ * Mirrors the conflict-marker ID scheme. Assigned at `spec add` time so
+ * supersedes/superseded-by references survive line-number drift.
+ */
+export declare function generateSid(now?: Date): string;
 /**
  * Format a single entry for writing to a spec file.
  * Writes `category=` attribute as the primary classifier.
  */
-export declare function formatNewEntry(category: string, keywords: string[], date: string, title: string, content: string, source?: string, ref?: string, description?: string, confidence?: ConfidenceLevel, conflictMarker?: string, conflictNote?: string): string;
+export declare function formatNewEntry(category: string, keywords: string[], date: string, title: string, content: string, source?: string, ref?: string, description?: string, confidence?: ConfidenceLevel, conflictMarker?: string, conflictNote?: string, lifecycle?: SpecEntryLifecycle): string;
 //# sourceMappingURL=spec-entry-parser.d.ts.map

package/dist/src/tools/spec-entry-parser.d.ts.map

@@ -1 +1 @@
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package/dist/src/tools/spec-entry-parser.js

@@ -5,6 +5,7 @@
  * Supports dual-format: new `<spec-entry>` tags + legacy heading-based entries.
  */
 export const VALID_CONFIDENCE_LEVELS = ['high', 'medium', 'low', 'contested'];
+export const VALID_STATUS = ['active', 'deprecated'];
 // ============================================================================
 // Valid categories (shared with spec-loader)
 // ============================================================================
@@ -55,6 +56,7 @@ export function parseSpecEntries(content) {
         const confidence = attrs.confidence;
         const conflictMarker = attrs['conflict-marker'] || undefined;
         const conflictNote = attrs['conflict-note'] || undefined;
+        const status = attrs.status;
         const entry = {
             category: attrs.category ?? '',
             keywords: attrs.keywords ? attrs.keywords.split(',').map(k => k.trim().toLowerCase()).filter(Boolean) : [],
@@ -66,6 +68,10 @@ export function parseSpecEntries(content) {
             confidence: confidence && VALID_CONFIDENCE_LEVELS.includes(confidence) ? confidence : undefined,
             conflictMarker,
             conflictNote,
+            sid: attrs.sid || undefined,
+            supersedes: attrs.supersedes || undefined,
+            supersededBy: attrs['superseded-by'] || undefined,
+            status: status && VALID_STATUS.includes(status) ? status : undefined,
             title,
             content: body.trim(),
             lineStart,
@@ -187,11 +193,21 @@ function formatEntryClean(e) {
     }
     return (metaLine ? metaLine + '\n\n' : '') + e.content + conflictLine + refLine;
 }
+/**
+ * Generate a stable spec-entry identity: `S-YYYYMMDD-xxxx`.
+ * Mirrors the conflict-marker ID scheme. Assigned at `spec add` time so
+ * supersedes/superseded-by references survive line-number drift.
+ */
+export function generateSid(now = new Date()) {
+    const date = now.toISOString().slice(0, 10).replace(/-/g, '');
+    const rand = Math.random().toString(36).slice(2, 6);
+    return `S-${date}-${rand}`;
+}
 /**
  * Format a single entry for writing to a spec file.
  * Writes `category=` attribute as the primary classifier.
  */
-export function formatNewEntry(category, keywords, date, title, content, source, ref, description, confidence, conflictMarker, conflictNote) {
+export function formatNewEntry(category, keywords, date, title, content, source, ref, description, confidence, conflictMarker, conflictNote, lifecycle) {
     const esc = (s) => s.replace(/&/g, '&amp;').replace(/"/g, '&quot;').replace(/</g, '&lt;').replace(/>/g, '&gt;');
     const kwStr = keywords.map(k => k.toLowerCase().trim()).filter(Boolean).join(',');
     const sourceAttr = source ? ` source="${esc(source)}"` : '';
@@ -201,7 +217,11 @@ export function formatNewEntry(category, keywords, date, title, content, source,
     const confidenceAttr = confidence ? ` confidence="${confidence}"` : '';
     const conflictMarkerAttr = conflictMarker ? ` conflict-marker="${conflictMarker}"` : '';
     const conflictNoteAttr = conflictNote ? ` conflict-note="${conflictNote}"` : '';
-    return `<spec-entry category="${category}" keywords="${kwStr}" date="${date}"${titleAttr}${descAttr}${sourceAttr}${refAttr}${confidenceAttr}${conflictMarkerAttr}${conflictNoteAttr}>\n\n### ${title}\n\n${content}\n\n</spec-entry>`;
+    const sidAttr = lifecycle?.sid ? ` sid="${esc(lifecycle.sid)}"` : '';
+    const supersedesAttr = lifecycle?.supersedes ? ` supersedes="${esc(lifecycle.supersedes)}"` : '';
+    const supersededByAttr = lifecycle?.supersededBy ? ` superseded-by="${esc(lifecycle.supersededBy)}"` : '';
+    const statusAttr = lifecycle?.status && lifecycle.status !== 'active' ? ` status="${lifecycle.status}"` : '';
+    return `<spec-entry category="${category}" keywords="${kwStr}" date="${date}"${sidAttr}${titleAttr}${descAttr}${sourceAttr}${refAttr}${confidenceAttr}${conflictMarkerAttr}${conflictNoteAttr}${supersedesAttr}${supersededByAttr}${statusAttr}>\n\n### ${title}\n\n${content}\n\n</spec-entry>`;
 }
 // ============================================================================
 // Internal helpers