maestro-flow 0.5.37 → 0.5.38

package/.codex/skills/manage-drift-realign/SKILL.md

@@ -0,0 +1,471 @@
+---
+name: manage-drift-realign
+description: Detect and realign .workflow/ artifact drift against code reality after refactoring
+argument-hint: "[-y|--yes] [-c|--concurrency 4] [--continue] \"--scope <all|roadmap|spec|codebase|state|issue|knowhow|project> [--since YYYY-MM-DD|commit|HEAD~N] [--depth shallow|deep] [--dry-run] [--report] [--auto-archive]\""
+allowed-tools: spawn_agents_on_csv, Read, Write, Edit, Bash, Glob, Grep, request_user_input
+---
+
+<purpose>
+Detect divergence between code reality and `.workflow/` artifacts (roadmap, specs, codebase docs, state, issues, knowhow, project.md) after major refactoring + incremental changes. Reconstructs git + session timeline, runs 4 parallel drift scanners via CSV-wave, then proposes realignment actions.
+
+Complementary to `manage-knowledge-audit` (internal contradictions within knowledge stores) — this skill detects **code ↔ document** drift.
+
+**Core workflow**: Timeline Reconstruction → Drift Score → Parallel Scan (4 agents) → Triage → Apply
+
+**Topology**: Single-wave parallel (4 independent scanners)
+
+```
++--------------------------------------------------------------------------+
+|                    DRIFT REALIGN CSV WAVE WORKFLOW                        |
++--------------------------------------------------------------------------+
+|                                                                          |
+|  Phase 1: Setup + Timeline                                               |
+|     +-- Validate .workflow/ exists, parse arguments                      |
+|     +-- Run maestro timeline --since <date> --json → timeline.json       |
+|     +-- Compute drift_score (LOW / MODERATE / SEVERE)                    |
+|     +-- Platform inquiry: ask user which platform to focus (if multi)    |
+|     +-- Generate tasks.csv with 4 scanner tasks (all wave 1)             |
+|                                                                          |
+|  Phase 2: Wave Execution (Single Wave)                                   |
+|     +-- Wave 1: 4 scanners run concurrently                             |
+|     |   +-- roadmap-scanner                                              |
+|     |   +-- spec-scanner                                                 |
+|     |   +-- codebase-scanner                                             |
+|     |   +-- artifact-scanner                                             |
+|     +-- discoveries.ndjson shared (append-only)                          |
+|                                                                          |
+|  Phase 3: Synthesize + Triage                                            |
+|     +-- Merge findings, dedup, sort by P0 > P1 > P2                     |
+|     +-- Merge existing conflict-markers from maestro spec conflict list  |
+|     +-- Interactive triage (or --auto-archive / --report / --dry-run)    |
+|                                                                          |
+|  Phase 4: Apply + Report                                                 |
+|     +-- Backup to .trash/, apply actions, auto-rebuild if needed         |
+|     +-- Update state.json (last_drift_realign)                           |
+|     +-- Generate drift-report + drift-log.jsonl                          |
+|                                                                          |
++--------------------------------------------------------------------------+
+```
+
+</purpose>
+
+<context>
+$ARGUMENTS -- optional flags for drift realign control.
+
+**Usage**:
+
+```bash
+$manage-drift-realign ""
+$manage-drift-realign -y "--scope all --since 2026-04-01"
+$manage-drift-realign -c 4 "--scope spec --depth deep"
+$manage-drift-realign -y "--scope codebase --auto-archive"
+$manage-drift-realign "" "--scope all --report"
+$manage-drift-realign "" "--scope all --dry-run"
+$manage-drift-realign --continue "20260624-drift-realign"
+```
+
+**Flags**:
+- `-y, --yes`: Skip all confirmations (auto mode)
+- `-c, --concurrency N`: Max concurrent scanner agents (default: 4)
+- `--continue`: Resume existing session
+
+**Inner flags** (passed inside quotes):
+- `--scope <type>`: roadmap / spec / codebase / state / issue / knowhow / project / all (default: all)
+- `--since <date|commit|HEAD~N>`: Analysis starting point (default: auto-detect from state.json)
+- `--depth <shallow|deep>`: shallow = mtime + reference check; deep = LLM semantic analysis (default: shallow)
+- `--dry-run`: Full preview, no writes
+- `--report`: Generate report only, skip triage
+- `--auto-archive`: Auto-apply suggested actions for P1/P2, only P0 gets interactive review
+
+**Output Directory**: `.workflow/.csv-wave/{session-id}/`
+**Core Output**: `tasks.csv` + `results.csv` + `discoveries.ndjson` + `context.md`
+**Report Output**: `.workflow/.drift-realign/drift-report-{date}.md` + `drift-log.jsonl`
+
+**State files read**:
+- `.workflow/state.json` — project state + artifact registry
+- `.workflow/roadmap.md` — milestone/phase roadmap
+- `.workflow/specs/*.md` — spec entries
+- `.workflow/codebase/*.md` — codebase docs (architecture, features, tech-stack, concerns)
+- `.workflow/codebase/doc-index.json` — documentation index
+- `.workflow/issues/issues.jsonl` — issue tracking
+- `.workflow/knowhow/*.md` — knowledge documents
+- `.workflow/project.md` — project definition
+</context>
+
+<csv_schema>
+
+### tasks.csv (Master State)
+
+```csv
+id,title,description,scan_scope,output_format,deps,context_from,wave
+"1","Roadmap Scanner","Scan .workflow/roadmap.md and .workflow/state.json for drift against code reality. Read timeline.json for git change context. Detect: phantom_phase (P0), stale_progress (P1), milestone_mismatch (P0), outdated_criteria (P1), dependency_ghost (P1), timeline_impossible (P2). For each finding: verify against code/state.json before reporting. Return JSON array of DriftFinding objects via output_schema.","roadmap","json","","","1"
+"2","Spec Scanner","Scan .workflow/specs/*.md spec-entry blocks for drift against actual code patterns. Read timeline.json hot_paths to focus on high-change areas. Detect: convention_violation (P0), dead_import_pattern (P1), architecture_breach (P0), stale_dependency (P1), naming_drift (P2), test_convention_gap (P2). {DEPTH_INSTRUCTION}. Return JSON array of DriftFinding objects via output_schema.","spec","json","","","1"
+"3","Codebase Scanner","Scan .workflow/codebase/*.md and doc-index.json for drift against current code structure. Read timeline.json for git changes. Detect: architecture_outdated (P0), feature_missing (P1), tech_stack_changed (P0), concern_drift (P1), doc_index_stale (P0). {DEPTH_INSTRUCTION}. Return JSON array of DriftFinding objects via output_schema.","codebase","json","","","1"
+"4","Artifact Scanner","Scan .workflow/issues/issues.jsonl, .workflow/knowhow/*.md, .workflow/project.md, and state.json accumulated_context for drift. Read timeline.json for git context. Detect: issue_code_ref_dead (P1), issue_stale_open (P1), knowhow_code_ref_dead (P1), orphan_session (P2), project_tech_drift (P0), project_req_drift (P1), accumulated_stale (P1), deferred_resolved (P2). Return JSON array of DriftFinding objects via output_schema.","artifact","json","","","1"
+```
+
+**Substitutions (orchestrator MUST do BEFORE writing tasks.csv)**:
+- `{DEPTH_INSTRUCTION}`: If `--depth shallow` → "Use file existence checks and grep pattern matching only. Do NOT make LLM-based semantic judgments." If `--depth deep` → "Use LLM semantic analysis: read spec/doc content alongside code samples from hot_paths and judge alignment."
+
+**Columns**:
+
+| Column | Description |
+|--------|-------------|
+| `id` | Scanner identifier (1-4) |
+| `title` | Scanner name |
+| `description` | Detailed scan instructions with drift type definitions |
+| `scan_scope` | roadmap / spec / codebase / artifact |
+| `output_format` | Always "json" |
+| `deps` | Empty (all independent) |
+| `context_from` | Empty (all read timeline.json directly) |
+| `wave` | Always 1 (single wave) |
+
+**Output columns** (returned exclusively via `output_schema`):
+
+| Column | Description |
+|--------|-------------|
+| `result_status` | `completed` / `failed` |
+| `result_findings` | JSON array of DriftFinding objects (stringified) |
+| `error` | Error message if failed |
+
+### DriftFinding Schema (per finding in result_findings array)
+
+```json
+{
+  "id": "DFT-{8hex}",
+  "scope": "roadmap|spec|codebase|state|issue|knowhow|project",
+  "severity": "P0|P1|P2",
+  "target": { "file": "string", "section": "string (optional)" },
+  "drift_type": "string (one of the defined types per scanner)",
+  "evidence": {
+    "code_reality": "string (what code actually shows)",
+    "doc_claim": "string (what the document claims)",
+    "git_ref": "string (commit reference, optional)"
+  },
+  "suggested_action": "keep|update|archive|rebuild",
+  "update_hint": "string (specific update suggestion, optional)"
+}
+```
+
+</csv_schema>
+
+<invariants>
+1. **Code-as-Truth**: Code is the single source of truth. When doc says X but code does Y, the doc is drifted.
+2. **Start Immediately**: First action is session init, then Phase 1.
+3. **CSV is Source of Truth**: tasks.csv holds all scanner state.
+4. **Discovery Board is Append-Only**: Scanners share findings via NDJSON.
+5. **Partial Results OK**: If 3/4 scanners succeed, proceed with available findings.
+6. **Backup Before Mutate**: Phase 4 backup MUST succeed before any file mutations.
+7. **No Auto-Delete**: Archive moves to .trash/, never physically deletes.
+8. **Rebuild is Scoped**: Auto-rebuild only triggers for codebase scope (/quality-sync --full).
+9. **Timeline as Shared Context**: All scanners read timeline.json — orchestrator writes it BEFORE generating tasks.csv.
+10. **DO NOT STOP**: Execute until all scanners complete or fail, then proceed through triage and apply.
+</invariants>
+
+<execution>
+
+### Output Artifacts
+
+| File | Purpose | Lifecycle |
+|------|---------|-----------|
+| `tasks.csv` | Master state — 4 scanner tasks | Updated after wave |
+| `wave-1.csv` | Wave input (temporary) | Created before wave, deleted after |
+| `wave-1-results.csv` | Wave output | Created by spawn_agents_on_csv |
+| `results.csv` | Final export | Created in Phase 3 |
+| `discoveries.ndjson` | Shared exploration board | Append-only during wave |
+| `context.md` | Human-readable report | Created in Phase 4 |
+| `timeline.json` | Git + session timeline | Created in Phase 1 |
+
+### Session Initialization
+
+Parse `$ARGUMENTS` to extract:
+- `AUTO_YES` from `--yes` / `-y`
+- `continueMode` from `--continue`
+- `maxConcurrency` from `--concurrency N` / `-c N` (default: 4)
+- Inner flags: `scope`, `since`, `depth`, `dryRun`, `reportOnly`, `autoArchive`
+
+Session ID: `{YYYYMMDD}-drift-realign`
+Session folder: `.workflow/.csv-wave/{sessionId}/` — create via `mkdir -p`
+
+### Phase 1: Setup + Timeline
+
+**Step 1.1: Validate**
+- `.workflow/state.json` exists — abort with E001 if missing
+- git available — abort with E003 if not a git repo
+
+**Step 1.2: Resolve --since**
+1. Explicit `--since` value → parse as date/commit/HEAD~N
+2. `state.json.last_drift_realign` → use that timestamp
+3. `state.json.last_pruned` → use that timestamp
+4. Fallback → 90 days ago
+
+**Step 1.3: Build timeline**
+```bash
+maestro timeline --since <resolved_date> --json --output <sessionFolder>/timeline.json
+```
+If command fails, fallback to inline git log + session load.
+Parse timeline.json to extract: `window`, `git_summary`, `session_summary`, `hot_paths`, `cold_workflow_files`.
+
+**Step 1.4: Compute drift score**
+```
+drift_score = drift_window_days × sqrt(changed_files_count) × scope_weight
+changed_files_count = |Set(git_files) ∪ Set(session_edited_files)|
+
+scope_weight: roadmap=1.5, project=1.4, spec=1.3, state=1.2, codebase=1.0, issue=0.8, knowhow=0.7
+(scope=all: weighted average)
+
+Thresholds:
+  LOW:      score < 30
+  MODERATE: 30 ≤ score < 100
+  SEVERE:   score ≥ 100 → auto-upgrade to --depth deep
+  drift_window > 180 days → force --depth deep + W002
+```
+
+Display drift summary to user.
+
+**Step 1.5: Platform inquiry (interactive)**
+If `session_summary.by_platform` has multiple platforms AND total sessions > 20 AND NOT AUTO_YES:
+- Use `request_user_input` to ask: "Multiple session platforms detected. Focus on a specific platform?"
+- Options: All / Claude / Codex
+- If specific platform chosen: re-run `maestro timeline --platform <choice> --since <date> --json --output ...`
+
+**Step 1.6: Generate tasks.csv**
+- 4 rows (scanners), all wave 1, no dependencies
+- Substitute `{DEPTH_INSTRUCTION}` based on resolved depth
+- If `--scope` is not "all", generate only the matching scanner task(s)
+- User validation: display scanner breakdown (skip if AUTO_YES)
+
+### Phase 2: Wave Execution (Single Wave)
+
+Filter master `tasks.csv` for `wave == 1 AND status == pending` → write `wave-1.csv`.
+
+```javascript
+spawn_agents_on_csv({
+  csv_path: `${sessionFolder}/wave-1.csv`,
+  id_column: "id",
+  instruction: SCANNER_INSTRUCTION,
+  max_concurrency: maxConcurrency,
+  max_runtime_seconds: 3600,
+  output_csv_path: `${sessionFolder}/wave-1-results.csv`,
+  output_schema: {
+    type: "object",
+    properties: {
+      id:              { type: "string" },
+      result_status:   { type: "string", enum: ["completed", "failed"] },
+      result_findings: { type: "string", description: "JSON array of DriftFinding objects" },
+      error:           { type: "string" }
+    },
+    required: ["id", "result_status", "result_findings"]
+  }
+})
+```
+
+Merge `wave-1-results.csv` into master `tasks.csv`. Delete temporary wave files.
+
+#### Scanner Worker Contract (SCANNER_INSTRUCTION)
+
+```
+You are a drift scanner for ONE scope (roadmap / spec / codebase / artifact). Your task is to detect divergence between .workflow/ documentation and actual code reality.
+
+CORE PRINCIPLE: Code is ALWAYS right. When code and documentation disagree, the DOCUMENT is drifted.
+
+REQUIRED STEPS:
+  1. Read {sessionFolder}/timeline.json for git change context (hot_paths, cold_workflow_files, events)
+  2. Read the .workflow/ files specified in your description
+  3. For each drift type in your description, run the detection algorithm:
+     - shallow: file existence checks, grep pattern matching, path verification
+     - deep: read code samples + doc content, make semantic alignment judgments
+  4. For each detected drift, construct a DriftFinding JSON object with evidence
+  5. Append significant discoveries to {sessionFolder}/discoveries.ndjson
+  6. Call report_agent_job_result EXACTLY ONCE
+
+OUTPUT (must match output_schema):
+  {
+    "id": "<your row id>",
+    "result_status": "completed" | "failed",
+    "result_findings": "<JSON array of DriftFinding objects, stringified>",
+    "error": "<message if failed, else empty>"
+  }
+
+CONSTRAINTS:
+  - Do NOT modify any .workflow/ files (read-only scan)
+  - Do NOT write to tasks.csv, wave-*.csv, results.csv
+  - Do NOT call spawn_agents_on_csv (no recursion)
+  - NEVER report a finding without evidence (code_reality + doc_claim fields required)
+```
+
+### Phase 3: Synthesize + Triage
+
+**Step 3.1: Merge findings**
+- Parse `result_findings` from each scanner (JSON arrays of DriftFinding)
+- Dedup: same file + section → keep highest severity
+- Sort: P0 first, then P1, then P2
+- Filter by `--scope` if not "all"
+
+**Step 3.2: Conflict-marker integration**
+```bash
+maestro spec conflict list
+```
+For spec entries with existing conflict-markers that also appear in scanner findings: merge and elevate to P0.
+
+**Step 3.3: Triage**
+- If `--report` → skip to Phase 4 report
+- If `--dry-run` → display all findings with suggested actions, skip Phase 4 apply
+- If `--auto-archive` → auto-apply each finding's `suggested_action` for P1/P2; only P0 gets interactive review
+- Otherwise → interactive triage per finding using `request_user_input`:
+
+```
+[!] Drift Detected (P0 - architecture_outdated)
+Scope:    codebase
+Target:   .workflow/codebase/architecture.md §Module Boundaries
+Evidence:
+  Doc claims: "Three-layer architecture: api/, service/, db/"
+  Code reality: New src/payments/ module added, not described
+  Git ref: commit abc123 (2026-06-10)
+Hint: Add Payments module section
+Suggestion: update
+```
+
+Actions: keep / update / archive / rebuild / skip
+
+| Action | Behavior |
+|--------|----------|
+| keep | Confirmed no drift, log as reviewed |
+| update | Inject `<!-- DRIFT-TODO: {hint} (DFT-{id}) -->` at file top |
+| archive | Move to .trash/ |
+| rebuild | Mark for auto-rebuild (codebase → $quality-sync --full) |
+| skip | Skip without decision, will reappear on next run |
+
+Export master `tasks.csv` as `results.csv`.
+
+### Phase 4: Apply + Report
+
+**Step 4.1: Backup**
+```bash
+mkdir -p .workflow/.trash/drift-realign-{timestamp}/
+```
+Copy all affected files + state.json to backup. If backup fails → abort (E005).
+
+**Step 4.2: Apply actions**
+
+| Action | Implementation |
+|--------|---------------|
+| keep | Write drift-log.jsonl entry (action=keep) |
+| skip | Write drift-log.jsonl entry (action=skipped) |
+| update | Prepend `<!-- DRIFT-TODO: {hint} (DFT-{id}, {date}) -->` to target file |
+| archive | Move file to `.trash/{timestamp}/`, update state.json refs |
+| rebuild | Collect targets; after all other actions: invoke $quality-sync --full |
+
+After rebuild: if sync reports major structural changes → suggest $manage-codebase-rebuild.
+
+Conflict-marker cleanup: for update/archive targets with existing conflict-markers:
+```bash
+maestro spec conflict clear <file> <line>
+```
+
+Update state.json: `last_drift_realign = now` (atomic: backup → write → verify).
+
+**Step 4.3: Generate report**
+
+Write `.workflow/.drift-realign/drift-report-{date}.md`:
+
+```markdown
+# Drift Realign Report — {date}
+
+## Timeline Window
+- From: {from} → To: {to} ({days} days)
+- Git: {commits} commits, {files_changed} files (+{ins}/-{del})
+- Sessions: {total} total, {with_edits} with edits ({platform breakdown})
+- Drift Score: {score} ({LOW|MODERATE|SEVERE})
+
+## Scan Summary
+- Total findings: {N} ({P0} P0 / {P1} P1 / {P2} P2)
+- By scope: roadmap {N} / spec {N} / codebase {N} / artifact {N}
+
+## Actions Applied
+| # | Scope | Drift Type | Target | Severity | Action | Status |
+|---|-------|-----------|--------|----------|--------|--------|
+
+## Backup
+- Location: .workflow/.trash/drift-realign-{timestamp}/
+```
+
+Append to `.workflow/.drift-realign/drift-log.jsonl` (one JSON per line).
+
+**Step 4.4: Generate context.md** (in session folder):
+
+```markdown
+# Drift Realign Session Report
+
+## Summary
+- Scope: {scope}
+- Depth: {depth}
+- Drift Score: {score} ({level})
+- Scanners: {completed}/{total} succeeded
+- Findings: {total} ({P0} P0 / {P1} P1 / {P2} P2)
+- Actions: {updated} updated, {archived} archived, {rebuilt} rebuilt, {kept} kept, {skipped} skipped
+
+## Next Steps
+- Edit DRIFT-TODO markers: grep -r "DRIFT-TODO" .workflow/
+- Deep knowledge audit: $manage-knowledge-audit --scope all
+- Full codebase rebuild: $manage-codebase-rebuild
+- View status: $manage-status
+```
+
+Display completion report:
+
+```
+=== DRIFT REALIGN COMPLETE ===
+Timeline: {from} → {to} ({days} days, {commits} commits)
+Score: {score} ({level})
+
+  Findings:  {N} total ({P0} P0 / {P1} P1 / {P2} P2)
+  Updated:   {N} (DRIFT-TODO markers)
+  Archived:  {N} (moved to .trash/)
+  Rebuilt:   {rebuild_status}
+  Kept:      {N}
+  Skipped:   {N}
+
+  Report:  .workflow/.drift-realign/drift-report-{date}.md
+  Backup:  .workflow/.trash/drift-realign-{timestamp}/
+
+Next:
+  → grep -r "DRIFT-TODO" .workflow/   (edit marked files)
+  → $manage-knowledge-audit --scope all
+  → $manage-status
+```
+
+</execution>
+
+<error_codes>
+| Code | Severity | Condition | Recovery |
+|------|----------|-----------|----------|
+| E001 | error | `.workflow/` not initialized | Run `$maestro-init` first |
+| E002 | error | `--scope` value invalid | Provide valid scope |
+| E003 | error | git not available (not a git repo) | Initialize git |
+| E004 | error | `--since` cannot be resolved | Check date format or commit ref |
+| E005 | error | Backup failed | Check disk space |
+| W001 | warning | Session history unavailable (wiki not indexed) | Run `maestro wiki rebuild` |
+| W002 | warning | `drift_window` > 180 days | Auto-upgraded to `--depth deep` |
+| W003 | warning | Some scanner agents failed | Proceeding with partial findings |
+| W004 | warning | git log > 1000 commits | Auto-truncated to most recent 1000 |
+| W005 | warning | $quality-sync --full failed or reported major changes | Suggest $manage-codebase-rebuild |
+</error_codes>
+
+<success_criteria>
+- [ ] Session initialized with timeline.json and tasks.csv
+- [ ] drift_score computed and displayed (LOW/MODERATE/SEVERE)
+- [ ] Platform inquiry offered (if multi-platform sessions > 20)
+- [ ] 4 scanner agents executed via spawn_agents_on_csv (or subset per --scope)
+- [ ] DriftFinding[] merged, deduplicated, sorted by P0 > P1 > P2
+- [ ] Conflict-markers merged into findings
+- [ ] Triage completed (interactive / auto-archive / report / dry-run)
+- [ ] Backup tarball generated in .trash/ before any mutations
+- [ ] update actions injected DRIFT-TODO markers
+- [ ] archive actions moved files to .trash/
+- [ ] rebuild actions triggered $quality-sync --full
+- [ ] state.json updated with last_drift_realign timestamp
+- [ ] drift-report-{date}.md and drift-log.jsonl written
+- [ ] context.md generated in session folder
+- [ ] Completion report displayed with next-step routing
+</success_criteria>

package/README.md

@@ -65,7 +65,7 @@ npm install -g maestro-flow
 maestro install
 ```
 
-**Prerequisites**: Node.js ≥ 18, Claude Code CLI. Optional: Codex CLI, Gemini CLI for multi-agent workflows.
+**Prerequisites**: Node.js ≥ 18, Claude Code CLI. Optional: Codex CLI, agy (Antigravity) CLI for multi-agent workflows.
 
 `maestro install` provides an interactive component selector — choose which assets (commands, hooks, MCP, agents) to install. Use `maestro workspace link` to share knowledge (specs, knowhow, domain) across multiple projects.
 
@@ -97,6 +97,23 @@ Ralph automatically determines where you are (brainstorm → plan → execute
 | `/maestro-quick` | Quick fixes, small features (analyze → plan → execute) |
 | `/maestro-*` | Step-by-step: brainstorm, blueprint, analyze, plan, execute, verify |
 
+### Knowledge Management
+
+```bash
+# Search across wiki + code (BM25F ranking)
+maestro search "user authentication"
+
+# Load specific knowledge types
+maestro load --type spec --category coding
+maestro load --type knowhow --list
+
+# Explore codebase via API endpoints
+maestro explore "Find all database query patterns"
+
+# Manage domain terminology
+maestro domain add "API Gateway" "Unified entry point for all API requests"
+```
+
 ### Odyssey — Long-Running Iterative Cycles
 
 Odyssey commands run extended, self-correcting loops that combine archaeology, diagnosis, fix, verification, and knowledge persistence until acceptance criteria are met:
@@ -243,15 +260,15 @@ Built with React 19, Zustand, Tailwind CSS 4, Framer Motion, Hono, WebSocket.
 
 | Metric | Count |
 |--------|-------|
-| Source files (TypeScript) | 454 |
-| Lines of code | ~111,000 |
+| Source files (TypeScript) | 333 |
+| Lines of code | ~80,700 |
 | Slash commands | 64 |
 | Workflow definitions | 115 |
 | Skill packages | 45 |
 | Agent definitions | 23 |
-| CLI commands | 32 |
+| CLI commands | 35+ |
 | Templates | 92 |
-| Guides (bilingual) | 67 |
+| Guides (bilingual) | 76 |
 
 ### Tech Stack
 
@@ -262,7 +279,7 @@ Built with React 19, Zustand, Tailwind CSS 4, Framer Motion, Hono, WebSocket.
 | Knowledge Graph | better-sqlite3, Drizzle ORM, web-tree-sitter |
 | Frontend | React 19, Zustand, Tailwind CSS 4, Framer Motion, Radix UI |
 | Backend | Hono, WebSocket, SSE |
-| Agents | Claude Agent SDK, Codex CLI, Gemini CLI, OpenCode |
+| Agents | Claude Agent SDK, Codex CLI, agy (Antigravity) CLI, OpenCode |
 | Build | Vite 6, TypeScript 5.7, Vitest |
 
 ### Architecture
@@ -271,7 +288,7 @@ Built with React 19, Zustand, Tailwind CSS 4, Framer Motion, Hono, WebSocket.
 maestro/
 ├── bin/                     # CLI entry points
 ├── src/                     # Core CLI (Commander.js + MCP SDK)
-│   ├── commands/            # 32 CLI commands
+│   ├── commands/            # 35+ CLI commands
 │   ├── mcp/                 # MCP server (stdio transport)
 │   ├── graph/               # Knowledge Graph (SQLite + tree-sitter)
 │   └── core/                # Tool registry, extension loader
@@ -300,7 +317,7 @@ maestro/
 
 **Workflow**
 - **[Command Usage Guide](guide/command-usage-guide.en.md)** — All 64 commands with workflow diagrams and pipeline chaining
-- **[CLI Commands Reference](guide/cli-commands-guide.en.md)** — All 32 terminal commands
+- **[CLI Commands Reference](guide/cli-commands-guide.en.md)** — All 35+ terminal commands
 - **[Workflow Structure Guide](guide/workflow-structure-guide.en.md)** — Command topology, chain composition
 - **[Quality Pipeline Guide](guide/quality-pipeline-guide.en.md)** — Verify, review, test pipeline
 - **[Maestro Coordinator Guide](guide/maestro-coordinator-guide.en.md)** — Multi-agent coordination patterns

package/README.zh-CN.md

@@ -242,15 +242,15 @@ maestro command-help           # 交互式命令参考（别名: ch）
 
 | 指标 | 数量 |
 |------|------|
-| 源文件 (TypeScript) | 454 |
-| 代码行数 | ~111,000 |
+| 源文件 (TypeScript) | 333 |
+| 代码行数 | ~80,700 |
 | 斜杠命令 | 64 |
 | 工作流定义 | 115 |
 | 技能包 | 45 |
 | Agent 定义 | 23 |
-| CLI 命令 | 32 |
+| CLI 命令 | 35+ |
 | 模板 | 92 |
-| 指南（双语） | 67 |
+| 指南（双语） | 76 |
 
 ### 技术栈
 
@@ -270,7 +270,7 @@ maestro command-help           # 交互式命令参考（别名: ch）
 maestro/
 ├── bin/                     # CLI 入口
 ├── src/                     # 核心 CLI (Commander.js + MCP SDK)
-│   ├── commands/            # 32 个 CLI 命令
+│   ├── commands/            # 35+ 个 CLI 命令
 │   ├── mcp/                 # MCP 服务器 (stdio 传输)
 │   ├── graph/               # 知识图谱 (SQLite + tree-sitter)
 │   └── core/                # 工具注册、扩展加载器
@@ -299,7 +299,7 @@ maestro/
 
 **工作流**
 - **[命令使用指南](guide/command-usage-guide.md)** — 全部 64 个命令，含工作流图表和管线衔接
-- **[CLI 命令参考](guide/cli-commands-guide.md)** — 全部 32 个终端命令
+- **[CLI 命令参考](guide/cli-commands-guide.md)** — 全部 35+ 个终端命令
 - **[工作流结构指南](guide/workflow-structure-guide.md)** — 命令拓扑、链组合
 - **[质量管线指南](guide/quality-pipeline-guide.md)** — verify、review、test 管线
 - **[Maestro 协调器指南](guide/maestro-coordinator-guide.md)** — 多智能体协调模式

package/dashboard/dist-server/src/commands/install-backend.d.ts

@@ -110,3 +110,13 @@ export interface UninstallOptions {
  * (schema < 2.0) that don't have hooks/mcp/statusline records.
  */
 export declare function uninstallManifest(manifest: Manifest, opts?: UninstallOptions): UninstallResult;
+/**
+ * Write `[[skills.config]]` entries to `~/.codex/config.toml` to disable
+ * .agents/ skills that duplicate the native codex skills.
+ * Returns the number of entries written.
+ */
+export declare function writeCodexSkillDedupeConfig(scope: 'global' | 'project', projectPath: string): number;
+/**
+ * Remove the maestro-managed dedupe block from codex config.
+ */
+export declare function removeCodexSkillDedupeConfig(scope: 'global' | 'project', projectPath: string): boolean;

package/dashboard/dist-server/src/commands/install-backend.js

@@ -710,4 +710,73 @@ function legacyCleanup(manifest, result) {
         result.mcpRemoved.claude = true;
     }
 }
+// ---------------------------------------------------------------------------
+// Codex skill deduplication — disable .agents/ skills in codex config
+// ---------------------------------------------------------------------------
+/**
+ * Write `[[skills.config]]` entries to `~/.codex/config.toml` to disable
+ * .agents/ skills that duplicate the native codex skills.
+ * Returns the number of entries written.
+ */
+export function writeCodexSkillDedupeConfig(scope, projectPath) {
+    const agentsSkillsDir = scope === 'global'
+        ? join(homedir(), '.agents', 'skills')
+        : join(projectPath, '.agents', 'skills');
+    if (!existsSync(agentsSkillsDir))
+        return 0;
+    const skillDirs = readdirSync(agentsSkillsDir, { withFileTypes: true })
+        .filter(e => e.isDirectory())
+        .map(e => e.name);
+    if (skillDirs.length === 0)
+        return 0;
+    const fp = getCodexConfigPath(scope, projectPath);
+    let content = '';
+    if (existsSync(fp)) {
+        content = readFileSync(fp, 'utf-8');
+    }
+    // Remove existing maestro-managed dedupe block
+    const DEDUPE_START = '# maestro:dedupe-agents-start';
+    const DEDUPE_END = '# maestro:dedupe-agents-end';
+    const startIdx = content.indexOf(DEDUPE_START);
+    const endIdx = content.indexOf(DEDUPE_END);
+    if (startIdx !== -1 && endIdx !== -1) {
+        content = (content.slice(0, startIdx) + content.slice(endIdx + DEDUPE_END.length))
+            .replace(/\n{3,}/g, '\n\n').trim();
+    }
+    const entries = skillDirs.map(name => {
+        const skillPath = join(agentsSkillsDir, name, 'SKILL.md').replace(/\\/g, '/');
+        return `[[skills.config]]\npath = "${skillPath}"\nenabled = false`;
+    });
+    const block = [
+        '',
+        DEDUPE_START,
+        ...entries,
+        DEDUPE_END,
+    ].join('\n');
+    content = content ? content + '\n' + block + '\n' : block.trimStart() + '\n';
+    const dir = join(fp, '..');
+    if (!existsSync(dir))
+        mkdirSync(dir, { recursive: true });
+    writeFileSync(fp, content, 'utf-8');
+    return skillDirs.length;
+}
+/**
+ * Remove the maestro-managed dedupe block from codex config.
+ */
+export function removeCodexSkillDedupeConfig(scope, projectPath) {
+    const fp = getCodexConfigPath(scope, projectPath);
+    if (!existsSync(fp))
+        return false;
+    const content = readFileSync(fp, 'utf-8');
+    const DEDUPE_START = '# maestro:dedupe-agents-start';
+    const DEDUPE_END = '# maestro:dedupe-agents-end';
+    const startIdx = content.indexOf(DEDUPE_START);
+    const endIdx = content.indexOf(DEDUPE_END);
+    if (startIdx === -1 || endIdx === -1)
+        return false;
+    const cleaned = (content.slice(0, startIdx) + content.slice(endIdx + DEDUPE_END.length))
+        .replace(/\n{3,}/g, '\n\n').trim();
+    writeFileSync(fp, cleaned + '\n', 'utf-8');
+    return true;
+}
 //# sourceMappingURL=install-backend.js.map