maestro-flow 0.4.19 → 0.4.21

package/dist/src/graph/analyzers/fs-analyzer.js

@@ -0,0 +1,959 @@
+// ---------------------------------------------------------------------------
+// fs-analyzer.ts -- Filesystem-based code analyzer.
+//
+// Recursively walks a project directory, extracts file nodes, import edges,
+// exported symbols, module groupings, and architectural layers.
+//
+// No external dependencies -- uses only Node.js built-in modules.
+// ---------------------------------------------------------------------------
+import { readdirSync, readFileSync, statSync, existsSync } from 'node:fs';
+import { join, relative, extname, basename, dirname, sep, posix } from 'node:path';
+import { execSync } from 'node:child_process';
+// ---------------------------------------------------------------------------
+// Constants
+// ---------------------------------------------------------------------------
+const SOURCE_EXTENSIONS = new Set([
+    '.ts', '.tsx', '.js', '.jsx', '.mjs', '.cjs',
+    '.vue', '.py', '.go', '.java', '.rs',
+]);
+/** Extensions that are recognized as config/doc/infra (non-source) files. */
+const NON_SOURCE_EXTENSIONS = new Set([
+    '.json', '.yaml', '.yml', '.toml', '.ini',
+    '.md', '.txt', '.rst',
+    '.dockerfile',
+]);
+const DEFAULT_EXCLUDES = [
+    'node_modules', 'dist', '.git', '.workflow',
+];
+const LAYER_PATTERNS = {
+    'commands': { name: 'CLI Commands', description: 'Command-line interface entry points' },
+    'coordinator': { name: 'Workflow Coordinator', description: 'Workflow orchestration and coordination' },
+    'hooks': { name: 'Hook System', description: 'Plugin and extensibility hooks' },
+    'tools': { name: 'Tool Layer', description: 'External tool integrations' },
+    'core': { name: 'Core Infrastructure', description: 'Core modules and shared infrastructure' },
+    'graph': { name: 'Graph Module', description: 'Knowledge graph data structures and queries' },
+    'agents': { name: 'Agent Management', description: 'Agent lifecycle and orchestration' },
+    'async': { name: 'Async Delegation', description: 'Asynchronous task delegation' },
+    'tui': { name: 'Terminal UI', description: 'Terminal user interface components' },
+    'db': { name: 'Backend', description: 'Backend services, data, and middleware' },
+    'services': { name: 'Backend', description: 'Backend services, data, and middleware' },
+    'routes': { name: 'Backend', description: 'Backend services, data, and middleware' },
+    'middleware': { name: 'Backend', description: 'Backend services, data, and middleware' },
+    'config': { name: 'Utilities', description: 'Configuration, utilities, and i18n' },
+    'utils': { name: 'Utilities', description: 'Configuration, utilities, and i18n' },
+    'i18n': { name: 'Utilities', description: 'Configuration, utilities, and i18n' },
+};
+const EXT_LANGUAGE = {
+    '.ts': 'TypeScript', '.tsx': 'TypeScript',
+    '.js': 'JavaScript', '.jsx': 'JavaScript',
+    '.mjs': 'JavaScript', '.cjs': 'JavaScript',
+    '.vue': 'Vue', '.py': 'Python',
+    '.go': 'Go', '.java': 'Java', '.rs': 'Rust',
+};
+// ---------------------------------------------------------------------------
+// File category classification
+// ---------------------------------------------------------------------------
+/** Config file names and patterns. */
+const CONFIG_NAMES = new Set([
+    'package.json', 'tsconfig.json', 'tsconfig.base.json',
+    '.eslintrc', '.eslintrc.js', '.eslintrc.json', '.eslintrc.cjs',
+    'eslint.config.js', 'eslint.config.mjs', 'eslint.config.cjs',
+    '.prettierrc', '.prettierrc.js', '.prettierrc.json',
+    'jest.config.js', 'jest.config.ts', 'vitest.config.ts',
+    'webpack.config.js', 'vite.config.ts', 'rollup.config.js',
+    '.babelrc', 'babel.config.js',
+    'Makefile', 'CMakeLists.txt',
+    'pyproject.toml', 'setup.py', 'setup.cfg',
+    'go.mod', 'go.sum', 'Cargo.toml', 'Cargo.lock',
+    'pom.xml', 'build.gradle', 'build.gradle.kts',
+]);
+/** Infra directory patterns. */
+const INFRA_DIRS = new Set([
+    '.github', '.gitlab', '.circleci', 'k8s', 'kubernetes',
+    'terraform', 'helm', 'deploy', 'docker', 'infra',
+]);
+const INFRA_NAMES = new Set([
+    'Dockerfile', 'docker-compose.yml', 'docker-compose.yaml',
+    '.dockerignore', 'Vagrantfile',
+]);
+/** Test directory patterns. */
+const TEST_DIRS = new Set([
+    '__tests__', 'test', 'tests', 'spec', 'specs',
+]);
+const TEST_INFIXES = ['.test.', '.spec.', '_test.', 'test_'];
+/** Classify a file into a category based on name, extension, and path. */
+function classifyFileCategory(relPath, name, ext) {
+    // Test files
+    const parts = relPath.split(posix.sep);
+    if (parts.some(p => TEST_DIRS.has(p)))
+        return 'test';
+    if (TEST_INFIXES.some(infix => name.includes(infix)))
+        return 'test';
+    if (name.startsWith('test_') || name.endsWith('_test' + ext))
+        return 'test';
+    // Config files
+    if (CONFIG_NAMES.has(name))
+        return 'config';
+    if (name.startsWith('.') && (ext === '.json' || ext === '.js' || ext === '.cjs' || ext === '.yaml' || ext === '.yml'))
+        return 'config';
+    // Infra files
+    if (INFRA_NAMES.has(name))
+        return 'infra';
+    if (parts.some(p => INFRA_DIRS.has(p)))
+        return 'infra';
+    // Docs
+    if (ext === '.md' || ext === '.txt' || ext === '.rst')
+        return 'docs';
+    // Default: code
+    return 'code';
+}
+// ---------------------------------------------------------------------------
+// Test file detection (aligned with merger.ts)
+// ---------------------------------------------------------------------------
+/** Check if a relative path looks like a test file (aligned with merger.ts isTestPath). */
+function isTestFile(relPath) {
+    const name = basename(relPath);
+    const ext = extname(name);
+    const stem = name.slice(0, name.length - ext.length);
+    // JS/TS family: infix pattern
+    if (SOURCE_EXTENSIONS.has(ext)) {
+        if (stem.endsWith('.test') || stem.endsWith('.spec'))
+            return true;
+    }
+    // Go
+    if (ext === '.go' && stem.endsWith('_test'))
+        return true;
+    // Python
+    if (ext === '.py' && (stem.startsWith('test_') || stem.endsWith('_test')))
+        return true;
+    // Java/Kotlin/C#
+    if ((ext === '.java' || ext === '.kt' || ext === '.cs') &&
+        (stem.endsWith('Test') || stem.endsWith('Tests') || stem.endsWith('IT')))
+        return true;
+    // Directory-based
+    const parts = relPath.split(posix.sep);
+    if (parts.some(p => TEST_DIRS.has(p)))
+        return true;
+    return false;
+}
+/**
+ * For a test file, compute candidate production file paths.
+ * Simplified version of merger.ts productionCandidates, covering the
+ * most common patterns: sibling de-infix, walk out of test dir, mirrored tree.
+ */
+function findProductionFile(testPath, fileSet) {
+    const name = basename(testPath);
+    const ext = extname(name);
+    const stem = name.slice(0, name.length - ext.length);
+    const dir = dirname(testPath);
+    const dirParts = dir.split(posix.sep).filter(s => s !== '.' && s !== '');
+    const JS_TS_EXTS = ['.ts', '.tsx', '.js', '.jsx', '.mjs', '.cjs'];
+    // Helper: try candidate path
+    function tryPath(candidate) {
+        const norm = posix.normalize(candidate);
+        return fileSet.has(norm) ? norm : null;
+    }
+    // Helper: try all JS/TS extensions for a stem in a directory
+    function tryStem(dir, baseStem) {
+        for (const e of JS_TS_EXTS) {
+            const result = tryPath(dir ? `${dir}/${baseStem}${e}` : `${baseStem}${e}`);
+            if (result)
+                return result;
+        }
+        return null;
+    }
+    // JS/TS family: strip .test / .spec infix
+    if (SOURCE_EXTENSIONS.has(ext)) {
+        let baseStem = null;
+        if (stem.endsWith('.test'))
+            baseStem = stem.slice(0, -5);
+        else if (stem.endsWith('.spec'))
+            baseStem = stem.slice(0, -5);
+        if (baseStem) {
+            // 1. Sibling
+            const sibling = tryStem(dir === '.' ? '' : dir, baseStem);
+            if (sibling)
+                return sibling;
+            // 2. Walk out of __tests__ / test / spec directory
+            if (dirParts.length > 0 && TEST_DIRS.has(dirParts[dirParts.length - 1])) {
+                const parentDir = dirParts.slice(0, -1).join('/');
+                const result = tryStem(parentDir, baseStem);
+                if (result)
+                    return result;
+            }
+            // 3. Mirrored tree (tests/... -> src/...)
+            if (dirParts.length > 0 && TEST_DIRS.has(dirParts[0])) {
+                const tailPath = dirParts.slice(1).join('/');
+                for (const root of ['src', 'app', 'lib', '']) {
+                    const newDir = [root, tailPath].filter(Boolean).join('/');
+                    const result = tryStem(newDir, baseStem);
+                    if (result)
+                        return result;
+                }
+            }
+        }
+    }
+    // Go
+    if (ext === '.go' && stem.endsWith('_test')) {
+        const baseStem = stem.slice(0, -5);
+        return tryPath(dir === '.' ? `${baseStem}.go` : `${dir}/${baseStem}.go`);
+    }
+    // Python
+    if (ext === '.py') {
+        let baseStem = null;
+        if (stem.startsWith('test_'))
+            baseStem = stem.slice(5);
+        else if (stem.endsWith('_test'))
+            baseStem = stem.slice(0, -5);
+        if (baseStem) {
+            const candidate = dir === '.' ? `${baseStem}.py` : `${dir}/${baseStem}.py`;
+            return tryPath(candidate);
+        }
+    }
+    return null;
+}
+// ---------------------------------------------------------------------------
+// Helpers
+// ---------------------------------------------------------------------------
+/** Normalize path separators to forward slashes. */
+function toForward(p) {
+    return p.split(sep).join(posix.sep);
+}
+/** Simple glob-like match: supports leading *, trailing *, and exact. */
+function simpleMatch(pattern, value) {
+    if (pattern === value)
+        return true;
+    if (pattern.startsWith('*') && value.endsWith(pattern.slice(1)))
+        return true;
+    if (pattern.endsWith('*') && value.startsWith(pattern.slice(0, -1)))
+        return true;
+    if (pattern.startsWith('*') && pattern.endsWith('*')) {
+        return value.includes(pattern.slice(1, -1));
+    }
+    // Support *.test.* style patterns
+    if (pattern.includes('*')) {
+        const regex = new RegExp('^' + pattern.replace(/\./g, '\\.').replace(/\*/g, '.*') + '$');
+        return regex.test(value);
+    }
+    return false;
+}
+/** Check whether a file or directory should be excluded. */
+function shouldExclude(name, relPath, excludes) {
+    for (const pattern of excludes) {
+        if (simpleMatch(pattern, name))
+            return true;
+        if (simpleMatch(pattern, relPath))
+            return true;
+        // Also check if any path segment matches (e.g. "node_modules" deep in tree)
+        const segments = relPath.split(posix.sep);
+        if (segments.some(seg => simpleMatch(pattern, seg)))
+            return true;
+    }
+    return false;
+}
+/** Determine complexity heuristic from line count (legacy, kept for backward compat). */
+function complexityFromLines(lineCount) {
+    if (lineCount < 100)
+        return 'simple';
+    if (lineCount <= 300)
+        return 'moderate';
+    return 'complex';
+}
+/**
+ * Enhanced complexity heuristic factoring in line count, exports, imports,
+ * and nesting depth. Returns a score-based classification.
+ */
+function enhancedComplexity(lineCount, exportCount, importCount, content) {
+    // Base score from lines
+    let score = 0;
+    if (lineCount >= 300)
+        score += 3;
+    else if (lineCount >= 100)
+        score += 2;
+    else
+        score += 1;
+    // Export complexity: more public surface = more complex interface
+    if (exportCount >= 10)
+        score += 2;
+    else if (exportCount >= 5)
+        score += 1;
+    // Import coupling: many dependencies = higher complexity
+    if (importCount >= 10)
+        score += 2;
+    else if (importCount >= 5)
+        score += 1;
+    // Nesting depth heuristic: count deeply nested blocks
+    let depth = 0;
+    let maxDepth = 0;
+    for (let i = 0; i < content.length; i++) {
+        if (content[i] === '{') {
+            depth++;
+            if (depth > maxDepth)
+                maxDepth = depth;
+        }
+        else if (content[i] === '}') {
+            depth = Math.max(0, depth - 1);
+        }
+    }
+    if (maxDepth >= 6)
+        score += 2;
+    else if (maxDepth >= 4)
+        score += 1;
+    if (score <= 2)
+        return 'simple';
+    if (score <= 5)
+        return 'moderate';
+    return 'complex';
+}
+/** Derive tags from directory name and file extension. */
+function deriveTags(relPath, ext) {
+    const tags = [];
+    const parts = relPath.split(posix.sep);
+    // Add first meaningful directory as tag
+    if (parts.length > 1) {
+        tags.push(parts[0]);
+    }
+    // Add language tag
+    const lang = EXT_LANGUAGE[ext];
+    if (lang)
+        tags.push(lang.toLowerCase());
+    return tags;
+}
+// ---------------------------------------------------------------------------
+// Git-aware file enumeration
+// ---------------------------------------------------------------------------
+/**
+ * Use `git ls-files` to enumerate tracked + untracked (non-ignored) files.
+ * Returns null if git is unavailable or the directory is not a git repo.
+ */
+function gitLsFiles(root) {
+    try {
+        const output = execSync('git ls-files -z -co --exclude-standard', {
+            cwd: root,
+            encoding: 'utf-8',
+            timeout: 10000,
+            stdio: ['pipe', 'pipe', 'pipe'],
+        });
+        return output.split('\0').filter(f => f.length > 0);
+    }
+    catch {
+        return null;
+    }
+}
+// ---------------------------------------------------------------------------
+// Import extraction
+// ---------------------------------------------------------------------------
+/** Extract import targets from source code. */
+function extractImports(content) {
+    const targets = [];
+    // ESM: import ... from '...'
+    const esmRegex = /import\s+(?:[\s\S]*?\s+from\s+)?['"]([^'"]+)['"]/g;
+    let match;
+    while ((match = esmRegex.exec(content)) !== null) {
+        targets.push(match[1]);
+    }
+    // CJS: require('...')
+    const cjsRegex = /require\s*\(\s*['"]([^'"]+)['"]\s*\)/g;
+    while ((match = cjsRegex.exec(content)) !== null) {
+        targets.push(match[1]);
+    }
+    return targets;
+}
+/** Extract imports with named symbols for call graph analysis. */
+function extractImportsWithSymbols(content) {
+    const results = [];
+    // ESM: import { foo, bar } from '...'
+    // ESM: import DefaultName from '...'
+    // ESM: import DefaultName, { foo } from '...'
+    const esmRegex = /import\s+([\s\S]*?)\s+from\s+['"]([^'"]+)['"]/g;
+    let match;
+    while ((match = esmRegex.exec(content)) !== null) {
+        const clause = match[1];
+        const specifier = match[2];
+        const symbols = [];
+        let defaultImport;
+        // Extract named imports: { foo, bar, baz as qux }
+        const namedMatch = clause.match(/\{([^}]+)\}/);
+        if (namedMatch) {
+            const parts = namedMatch[1].split(',');
+            for (const p of parts) {
+                const trimmed = p.trim();
+                if (!trimmed)
+                    continue;
+                // handle "foo as bar" -> use the local name "bar"
+                const asMatch = trimmed.match(/(\w+)\s+as\s+(\w+)/);
+                if (asMatch) {
+                    symbols.push(asMatch[2]);
+                }
+                else if (/^\w+$/.test(trimmed)) {
+                    symbols.push(trimmed);
+                }
+            }
+        }
+        // Extract default import
+        const defaultMatch = clause.match(/^(\w+)/);
+        if (defaultMatch && defaultMatch[1] !== 'type') {
+            defaultImport = defaultMatch[1];
+        }
+        results.push({ specifier, symbols, defaultImport });
+    }
+    return results;
+}
+/** Extract exported symbol names from source code. */
+function extractExports(content) {
+    const exports = [];
+    const seen = new Set();
+    // export function/class/interface/type/const/enum
+    const namedRegex = /export\s+(?:default\s+)?(?:async\s+)?(function|class|interface|type|const|let|var|enum)\s+(\w+)/g;
+    let match;
+    while ((match = namedRegex.exec(content)) !== null) {
+        const kind = match[1];
+        const name = match[2];
+        if (!seen.has(name)) {
+            seen.add(name);
+            exports.push({ name, kind });
+        }
+    }
+    return exports;
+}
+// ---------------------------------------------------------------------------
+// Call graph extraction
+// ---------------------------------------------------------------------------
+/**
+ * Find call sites in content that reference imported symbols.
+ * Returns the set of symbol names that are actually called.
+ */
+function extractCallSites(content, importedSymbols) {
+    const called = new Set();
+    if (importedSymbols.size === 0)
+        return called;
+    // Build a regex that matches any imported symbol followed by '('
+    // This catches: symbolName(, obj.symbolName( patterns
+    for (const sym of importedSymbols) {
+        // Match: word boundary + symbol + optional whitespace + '('
+        // Exclude: import/export/from/type keywords followed by the symbol
+        const pattern = new RegExp(`(?<!\\.)\\b${escapeRegex(sym)}\\s*\\(`, 'g');
+        if (pattern.test(content)) {
+            called.add(sym);
+        }
+    }
+    return called;
+}
+/** Escape special regex characters. */
+function escapeRegex(str) {
+    return str.replace(/[.*+?^${}()|[\]\\]/g, '\\$&');
+}
+// ---------------------------------------------------------------------------
+// Topological sort (Kahn's algorithm)
+// ---------------------------------------------------------------------------
+/** Entry-point file names that should appear first in tour. */
+const ENTRY_POINT_NAMES = new Set([
+    'index.ts', 'index.js', 'index.tsx', 'index.jsx',
+    'main.ts', 'main.js', 'cli.ts', 'cli.js',
+    'app.ts', 'app.js', 'server.ts', 'server.js',
+]);
+/**
+ * Topological sort of module names using Kahn's algorithm.
+ * Modules with no incoming edges (entry points) come first.
+ * Falls back to alphabetical for cycles.
+ */
+function topologicalSortModules(modules, moduleEdges, entryModules) {
+    const inDegree = new Map();
+    const adjacency = new Map();
+    for (const m of modules) {
+        inDegree.set(m, 0);
+        adjacency.set(m, []);
+    }
+    for (const edge of moduleEdges) {
+        if (!inDegree.has(edge.source) || !inDegree.has(edge.target))
+            continue;
+        if (edge.source === edge.target)
+            continue;
+        adjacency.get(edge.source).push(edge.target);
+        inDegree.set(edge.target, (inDegree.get(edge.target) ?? 0) + 1);
+    }
+    // Priority queue: entry modules first, then by in-degree (ascending)
+    const queue = [];
+    const result = [];
+    const visited = new Set();
+    // Seed with zero-degree nodes, prioritizing entry modules
+    const zeroDegree = modules.filter(m => (inDegree.get(m) ?? 0) === 0);
+    const entryFirst = zeroDegree.filter(m => entryModules.has(m));
+    const rest = zeroDegree.filter(m => !entryModules.has(m)).sort();
+    queue.push(...entryFirst, ...rest);
+    while (queue.length > 0) {
+        const current = queue.shift();
+        if (visited.has(current))
+            continue;
+        visited.add(current);
+        result.push(current);
+        const neighbors = (adjacency.get(current) ?? []).sort();
+        for (const neighbor of neighbors) {
+            const newDeg = (inDegree.get(neighbor) ?? 1) - 1;
+            inDegree.set(neighbor, newDeg);
+            if (newDeg === 0 && !visited.has(neighbor)) {
+                queue.push(neighbor);
+            }
+        }
+    }
+    // Add any remaining nodes (cycles) in alphabetical order
+    for (const m of modules.sort()) {
+        if (!visited.has(m)) {
+            result.push(m);
+        }
+    }
+    return result;
+}
+// ---------------------------------------------------------------------------
+// File resolution
+// ---------------------------------------------------------------------------
+/** Known source extensions for resolution attempts. */
+const RESOLVE_EXTENSIONS = ['.ts', '.tsx', '.js', '.jsx', '.mjs', '.cjs'];
+/**
+ * Resolve a relative import specifier to a file: node ID.
+ * Returns null if the import is a package (not relative).
+ */
+function resolveImport(importSpecifier, sourceRelPath, fileSet) {
+    // Only resolve relative imports
+    if (!importSpecifier.startsWith('.'))
+        return null;
+    const sourceDir = dirname(sourceRelPath);
+    let resolved = posix.normalize(posix.join(sourceDir, importSpecifier));
+    // Strip .js extension that TypeScript uses in ESM imports
+    if (resolved.endsWith('.js')) {
+        resolved = resolved.slice(0, -3);
+    }
+    // Try exact match first
+    if (fileSet.has(resolved))
+        return `file:${resolved}`;
+    // Try adding extensions
+    for (const ext of RESOLVE_EXTENSIONS) {
+        if (fileSet.has(resolved + ext))
+            return `file:${resolved + ext}`;
+    }
+    // Try index file in directory
+    for (const ext of RESOLVE_EXTENSIONS) {
+        const indexPath = posix.join(resolved, `index${ext}`);
+        if (fileSet.has(indexPath))
+            return `file:${indexPath}`;
+    }
+    return null;
+}
+function walkDirectory(root, options) {
+    const entries = [];
+    function walk(dir) {
+        let items;
+        try {
+            items = readdirSync(dir);
+        }
+        catch {
+            return;
+        }
+        for (const item of items) {
+            const fullPath = join(dir, item);
+            const rel = toForward(relative(root, fullPath));
+            let stat;
+            try {
+                stat = statSync(fullPath);
+            }
+            catch {
+                continue;
+            }
+            if (stat.isDirectory()) {
+                if (!shouldExclude(item, rel, options.excludes)) {
+                    walk(fullPath);
+                }
+                continue;
+            }
+            if (!stat.isFile())
+                continue;
+            const ext = extname(item).toLowerCase();
+            if (!SOURCE_EXTENSIONS.has(ext) && !NON_SOURCE_EXTENSIONS.has(ext))
+                continue;
+            if (shouldExclude(item, rel, options.excludes))
+                continue;
+            // Apply include filter if specified
+            if (options.includes.length > 0) {
+                const matched = options.includes.some(p => simpleMatch(p, rel) || simpleMatch(p, item));
+                if (!matched)
+                    continue;
+            }
+            entries.push({ absolutePath: fullPath, relPath: rel });
+        }
+    }
+    walk(root);
+    return entries;
+}
+/**
+ * Git-aware file enumeration. Uses `git ls-files` for accurate file listing
+ * that respects .gitignore. Falls back to walkDirectory on failure.
+ */
+function gitWalkDirectory(root, options) {
+    const gitFiles = gitLsFiles(root);
+    if (!gitFiles)
+        return walkDirectory(root, options);
+    const entries = [];
+    for (const relFile of gitFiles) {
+        const rel = toForward(relFile);
+        const name = basename(rel);
+        const ext = extname(name).toLowerCase();
+        // Filter by known extensions
+        if (!SOURCE_EXTENSIONS.has(ext) && !NON_SOURCE_EXTENSIONS.has(ext))
+            continue;
+        // Apply exclusion rules
+        if (shouldExclude(name, rel, options.excludes))
+            continue;
+        // Apply include filter
+        if (options.includes.length > 0) {
+            const matched = options.includes.some(p => simpleMatch(p, rel) || simpleMatch(p, name));
+            if (!matched)
+                continue;
+        }
+        entries.push({ absolutePath: join(root, relFile), relPath: rel });
+    }
+    return entries;
+}
+// ---------------------------------------------------------------------------
+// FsAnalyzer
+// ---------------------------------------------------------------------------
+export class FsAnalyzer {
+    name = 'fs-analyzer';
+    async analyze(projectRoot, options) {
+        const root = projectRoot;
+        const excludes = options?.exclude ?? DEFAULT_EXCLUDES;
+        const includes = options?.include ?? [];
+        // 1. Walk filesystem -- prefer git ls-files when available
+        const files = gitWalkDirectory(root, { includes, excludes });
+        const fileSet = new Set(files.map(f => f.relPath));
+        // 2. Build nodes, edges, and collect metadata
+        const nodes = [];
+        const edges = [];
+        const languagesFound = new Set();
+        const moduleFiles = new Map(); // module dir -> file node IDs
+        // Track exported symbols per file for call graph extraction
+        const fileExportedSymbols = new Map(); // fileId -> Set<symbolName>
+        // Track imports with symbols per file for call graph
+        const fileImportSymbols = new Map();
+        // Track test files for tested_by linking
+        const testFiles = [];
+        // Track module-level import edges for topological sort
+        const moduleImportEdges = [];
+        // Track entry-point modules
+        const entryModules = new Set();
+        for (const file of files) {
+            const ext = extname(file.relPath).toLowerCase();
+            const name = basename(file.relPath);
+            const parts = file.relPath.split(posix.sep);
+            const moduleDir = parts.length > 1 ? parts[0] : '_root';
+            const isSource = SOURCE_EXTENSIONS.has(ext);
+            // Track language
+            const lang = EXT_LANGUAGE[ext];
+            if (lang)
+                languagesFound.add(lang);
+            // Classify file category
+            const category = classifyFileCategory(file.relPath, name, ext);
+            // For non-source files, create lightweight nodes without parsing
+            if (!isSource) {
+                const fileId = `file:${file.relPath}`;
+                const tags = deriveTags(file.relPath, ext);
+                tags.push(category);
+                nodes.push({
+                    id: fileId,
+                    type: 'file',
+                    name,
+                    filePath: file.relPath,
+                    summary: `${category} file: ${name}`,
+                    tags,
+                    complexity: 'simple',
+                });
+                if (!moduleFiles.has(moduleDir))
+                    moduleFiles.set(moduleDir, []);
+                moduleFiles.get(moduleDir).push(fileId);
+                continue;
+            }
+            // Read file content (source files only)
+            let content;
+            try {
+                content = readFileSync(file.absolutePath, 'utf-8');
+            }
+            catch {
+                continue;
+            }
+            const lineCount = content.split('\n').length;
+            // Extract exports and imports for enhanced complexity
+            const exportedSymbols = extractExports(content);
+            const importTargets = extractImports(content);
+            const importInfos = extractImportsWithSymbols(content);
+            // Create file node with enhanced complexity and category tag
+            const fileId = `file:${file.relPath}`;
+            const tags = deriveTags(file.relPath, ext);
+            tags.push(category);
+            const complexity = enhancedComplexity(lineCount, exportedSymbols.length, importTargets.length, content);
+            // Detect entry points
+            if (ENTRY_POINT_NAMES.has(name)) {
+                entryModules.add(moduleDir);
+            }
+            // Track test files for tested_by linking
+            const isTest = isTestFile(file.relPath);
+            if (isTest && !tags.includes('test')) {
+                tags.push('test');
+            }
+            nodes.push({
+                id: fileId,
+                type: 'file',
+                name,
+                filePath: file.relPath,
+                summary: `${lang ?? 'Source'} file in ${moduleDir} module`,
+                tags,
+                complexity,
+            });
+            if (isTest) {
+                testFiles.push({ relPath: file.relPath, fileId });
+            }
+            // Track module membership
+            if (!moduleFiles.has(moduleDir))
+                moduleFiles.set(moduleDir, []);
+            moduleFiles.get(moduleDir).push(fileId);
+            // Track exported symbols for call graph
+            const exportNames = new Set(exportedSymbols.map(s => s.name));
+            fileExportedSymbols.set(fileId, exportNames);
+            // Extract exports as child nodes
+            for (const sym of exportedSymbols) {
+                const symId = `${sym.kind}:${file.relPath}:${sym.name}`;
+                nodes.push({
+                    id: symId,
+                    type: sym.kind,
+                    name: sym.name,
+                    filePath: file.relPath,
+                    summary: `Exported ${sym.kind} "${sym.name}" in ${name}`,
+                    tags: [...tags.filter(t => t !== 'test' && t !== category), sym.kind],
+                });
+                edges.push({
+                    source: fileId,
+                    target: symId,
+                    type: 'contains',
+                    direction: 'forward',
+                    weight: 1,
+                });
+            }
+            // Extract imports as edges + track for call graph
+            const importSymbolsForFile = [];
+            for (const target of importTargets) {
+                const resolvedId = resolveImport(target, file.relPath, fileSet);
+                if (resolvedId) {
+                    edges.push({
+                        source: fileId,
+                        target: resolvedId,
+                        type: 'imports',
+                        direction: 'forward',
+                        weight: 1,
+                    });
+                    // Track module-level dependencies for topological sort
+                    const targetRelPath = resolvedId.slice('file:'.length);
+                    const targetParts = targetRelPath.split(posix.sep);
+                    const targetModule = targetParts.length > 1 ? targetParts[0] : '_root';
+                    if (moduleDir !== targetModule && moduleDir !== '_root' && targetModule !== '_root') {
+                        moduleImportEdges.push({ source: moduleDir, target: targetModule });
+                    }
+                }
+            }
+            // Track named import symbols for call graph extraction
+            for (const info of importInfos) {
+                const resolvedId = resolveImport(info.specifier, file.relPath, fileSet);
+                if (resolvedId && info.symbols.length > 0) {
+                    importSymbolsForFile.push({ targetFileId: resolvedId, symbols: info.symbols });
+                }
+            }
+            if (importSymbolsForFile.length > 0) {
+                fileImportSymbols.set(fileId, importSymbolsForFile);
+            }
+        }
+        // 2b. Call graph extraction: find call sites for imported symbols
+        for (const file of files) {
+            const ext = extname(file.relPath).toLowerCase();
+            if (!SOURCE_EXTENSIONS.has(ext))
+                continue;
+            const fileId = `file:${file.relPath}`;
+            const importedRefs = fileImportSymbols.get(fileId);
+            if (!importedRefs || importedRefs.length === 0)
+                continue;
+            let content;
+            try {
+                content = readFileSync(file.absolutePath, 'utf-8');
+            }
+            catch {
+                continue;
+            }
+            // Collect all imported symbols and their source files
+            const symbolToFile = new Map();
+            for (const ref of importedRefs) {
+                for (const sym of ref.symbols) {
+                    symbolToFile.set(sym, ref.targetFileId);
+                }
+            }
+            const calledSymbols = extractCallSites(content, new Set(symbolToFile.keys()));
+            for (const sym of calledSymbols) {
+                const targetFileId = symbolToFile.get(sym);
+                if (!targetFileId)
+                    continue;
+                edges.push({
+                    source: fileId,
+                    target: targetFileId,
+                    type: 'calls',
+                    direction: 'forward',
+                    weight: 0.9,
+                    description: `Calls imported symbol "${sym}"`,
+                });
+            }
+        }
+        // 2c. Test file pairing: create tested_by edges
+        for (const test of testFiles) {
+            const prodPath = findProductionFile(test.relPath, fileSet);
+            if (prodPath) {
+                const prodFileId = `file:${prodPath}`;
+                edges.push({
+                    source: prodFileId,
+                    target: test.fileId,
+                    type: 'tested_by',
+                    direction: 'forward',
+                    weight: 0.8,
+                });
+                // Add "tested" tag to the production node
+                const prodNode = nodes.find(n => n.id === prodFileId);
+                if (prodNode && !prodNode.tags.includes('tested')) {
+                    prodNode.tags.push('tested');
+                }
+            }
+        }
+        // 3. Create module nodes
+        for (const [moduleDir, memberIds] of moduleFiles) {
+            if (moduleDir === '_root')
+                continue;
+            const moduleId = `module:${moduleDir}`;
+            nodes.push({
+                id: moduleId,
+                type: 'module',
+                name: moduleDir,
+                summary: `Module: ${moduleDir} (${memberIds.length} files)`,
+                tags: [moduleDir],
+            });
+            for (const memberId of memberIds) {
+                edges.push({
+                    source: moduleId,
+                    target: memberId,
+                    type: 'contains',
+                    direction: 'forward',
+                    weight: 1,
+                });
+            }
+        }
+        // 4. Build layers from directory patterns
+        const layerMap = new Map();
+        for (const [moduleDir] of moduleFiles) {
+            if (moduleDir === '_root')
+                continue;
+            const patternEntry = LAYER_PATTERNS[moduleDir];
+            if (!patternEntry)
+                continue;
+            const layerId = `layer:${patternEntry.name.toLowerCase().replace(/\s+/g, '-')}`;
+            if (!layerMap.has(layerId)) {
+                layerMap.set(layerId, {
+                    id: layerId,
+                    name: patternEntry.name,
+                    description: patternEntry.description,
+                    nodeIds: [],
+                });
+            }
+            const layer = layerMap.get(layerId);
+            // Add module node and its file nodes
+            layer.nodeIds.push(`module:${moduleDir}`);
+            const memberIds = moduleFiles.get(moduleDir);
+            if (memberIds) {
+                layer.nodeIds.push(...memberIds);
+            }
+        }
+        const layers = Array.from(layerMap.values());
+        // 5. Generate tour using topological sort
+        const tour = [];
+        let order = 1;
+        const moduleList = Array.from(moduleFiles.keys()).filter(m => m !== '_root');
+        const sortedModules = topologicalSortModules(moduleList, moduleImportEdges, entryModules);
+        for (const moduleDir of sortedModules) {
+            const memberIds = moduleFiles.get(moduleDir) ?? [];
+            const patternEntry = LAYER_PATTERNS[moduleDir];
+            const layerName = patternEntry?.name ?? moduleDir;
+            tour.push({
+                order: order++,
+                title: layerName,
+                description: patternEntry?.description ?? `Files in the ${moduleDir} directory`,
+                nodeIds: [`module:${moduleDir}`, ...memberIds.slice(0, 5)],
+            });
+        }
+        // 6. Assemble project metadata
+        const project = {
+            name: this.detectProjectName(root),
+            languages: Array.from(languagesFound).sort(),
+            frameworks: [],
+            description: `Code analysis of ${files.length} source files`,
+            analyzedAt: new Date().toISOString(),
+        };
+        // Try to detect frameworks from package.json
+        project.frameworks = this.detectFrameworks(root);
+        return {
+            version: '1.0.0',
+            valid: true,
+            project,
+            nodes,
+            edges,
+            layers,
+            tour,
+        };
+    }
+    /** Read project name from package.json or use directory name. */
+    detectProjectName(root) {
+        const pkgPath = join(root, 'package.json');
+        if (existsSync(pkgPath)) {
+            try {
+                const pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));
+                if (pkg.name)
+                    return pkg.name;
+            }
+            catch { /* fallback */ }
+        }
+        return basename(root);
+    }
+    /** Detect frameworks from package.json dependencies. */
+    detectFrameworks(root) {
+        const pkgPath = join(root, 'package.json');
+        if (!existsSync(pkgPath))
+            return [];
+        try {
+            const pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));
+            const allDeps = {
+                ...pkg.dependencies,
+                ...pkg.devDependencies,
+            };
+            const frameworks = [];
+            const checks = [
+                ['react', 'React'],
+                ['vue', 'Vue'],
+                ['angular', 'Angular'],
+                ['express', 'Express'],
+                ['fastify', 'Fastify'],
+                ['next', 'Next.js'],
+                ['nuxt', 'Nuxt'],
+                ['commander', 'Commander'],
+                ['ink', 'Ink'],
+            ];
+            for (const [pkg, name] of checks) {
+                if (allDeps?.[pkg])
+                    frameworks.push(name);
+            }
+            return frameworks;
+        }
+        catch {
+            return [];
+        }
+    }
+}
+//# sourceMappingURL=fs-analyzer.js.map