lua-cli 3.12.1 → 3.13.0

package/dist/compiler/agent-traverser.js

@@ -28,8 +28,8 @@ import fs from 'fs';
 import { pluginRegistry } from './plugins/registry.js';
 import { agentPlugin } from './plugins/agent.plugin.js';
 import { shouldSkipFile } from './utils/common.js';
-import { findImportSource, resolveIdentifierToArray } from './utils/ast-helpers.js';
-import { resolvePathAlias } from './utils/path-resolver.js';
+import { resolveModuleSpecifier, registerProjectRootDir } from './utils/path-resolver.js';
+import { resolveArrayRefs, reportDeopt, formatSarifWarning, } from './utils/reference-resolver.js';
 /**
  * All primitive types and their configuration.
  * To add a new primitive type, just add an entry here.
@@ -73,6 +73,27 @@ export class AgentTraverser {
             tsConfigFilePath: path.join(rootDir, 'tsconfig.json'),
             skipAddingFilesFromTsConfig: true,
         });
+        // Register this Project → rootDir so plugin code that only has a
+        // SourceFile in hand (SkillPlugin's `resolveArrayRefs({ project })`
+        // call sites) can recover the correct rootDir via
+        // `getProjectRootDir(project)` instead of falling through to
+        // `process.cwd()`. Without this, tsconfig `paths` aliases in a
+        // skill's `tools: [...]` / `.addTools([...])` arrays resolve
+        // against whatever directory the CLI was invoked from — which
+        // regresses the per-rootDir guarantee the resolver promises.
+        registerProjectRootDir(this.project, this.rootDir);
+    }
+    /**
+     * Absolute paths of every SourceFile the traverser loaded during `traverse()`,
+     * including cross-root files pulled in by the reference resolver
+     * (e.g. `packages/shared/utils.ts` in a monorepo agent).
+     *
+     * The compiler reads this to include cross-root sources in
+     * `manifest.projectFiles`, so `lua push backup` backs up everything the
+     * compiler actually needed — not just files under `rootDir`. See BAC-69.
+     */
+    getAllLoadedSourceFilePaths() {
+        return this.project.getSourceFiles().map((sf) => sf.getFilePath());
     }
     /**
      * Log a debug message if debug mode is enabled.
@@ -98,21 +119,45 @@ export class AgentTraverser {
             return null;
         }
         this.log(`🤖 Found agent: ${agentConfig.name} in ${agentConfig.sourcePath}`);
-        // Step 2: Load agent source file for import resolution
-        const agentFile = this.project.addSourceFileAtPath(agentConfig.sourcePath);
-        // Step 3: Collect all primitives (agent + its registered children)
+        // Step 2: Collect all primitives (agent + its registered children)
         const primitives = [];
         // The agent itself is a primitive
         const { refs: _refs, ...agentMetadata } = agentConfig;
         primitives.push(agentMetadata);
-        // Discover child primitives from the agent's config arrays
+        // Discover child primitives from the agent's config arrays.
+        // The resolver already carries each ref's source file, so we don't need
+        // another `findImportSource` pass — we just ask the right plugin to
+        // detect the primitive in that file.
         for (const config of PRIMITIVE_TYPES) {
             const refs = agentConfig.refs.get(config.kind) || [];
             for (const ref of refs) {
-                const sourcePath = this.resolveReference(ref, agentFile);
-                if (!sourcePath)
+                // Inline-new refs at the agent-registration level (e.g.
+                // `mcpServers: [new LuaMCPServer({...})]`) can't be bundled: the
+                // class name is generic, so there's no source-level identifier
+                // the bundler can import. Tell the user to name the instance
+                // with a `const x = new ...`, and skip this ref — rather than
+                // hitting the fallback `detected.length === 1` path which would
+                // mis-attribute it to whichever primitive happens to be declared
+                // first in the agent file.
+                if (ref.newExpression && !ref.declaration) {
+                    const className = ref.identifierName;
+                    const { line, column } = ref.sourceFile.getLineAndColumnAtPos(ref.newExpression.getStart());
+                    console.warn(formatSarifWarning({
+                        ruleId: 'lua/unresolved-primitive-ref',
+                        filePath: ref.sourceFile.getFilePath(),
+                        line,
+                        column,
+                        message: `inline "new ${className}({...})" in agent.${config.configProperty} cannot be ` +
+                            `bundled: the primitive has no source-level name the compiler can import`,
+                        hint: `assign it first: \`const myPrimitive = new ${className}({...}); ` +
+                            `${config.configProperty}: [myPrimitive]\``,
+                    }));
                     continue;
-                const primitive = this.extractPrimitive(config.kind, sourcePath, ref.name);
+                }
+                const sourcePath = ref.sourceFile.getFilePath();
+                const primitive = this.extractPrimitive(config.kind, sourcePath, ref.identifierName, {
+                    viaDefaultImport: ref.viaDefaultImport === true,
+                });
                 if (!primitive)
                     continue;
                 primitives.push(primitive);
@@ -182,7 +227,15 @@ export class AgentTraverser {
         const detection = agentPlugin.detectWithConfig(sourceFile);
         if (!detection)
             return null;
-        // Primitive ref discovery stays here (unique to traverser)
+        // Primitive ref discovery stays here (unique to traverser).
+        // Each kind gets its own walk with a fresh `visited` set — sharing
+        // one across kinds is incorrect: `followIdentifier` marks visit keys
+        // before resolving (for cycle detection), so a shared set makes the
+        // second kind see `webhooks` as "already visited" when it only shared
+        // an identifier with `jobs`, and silently drop the ref. That's the
+        // exact LUA-221-class silent-drop bug we're trying to eliminate.
+        // ts-morph caches `addSourceFileAtPath` on the Project anyway, so
+        // there's no cross-file-load cost from repeated walks.
         const refs = new Map();
         for (const primitiveType of PRIMITIVE_TYPES) {
             refs.set(primitiveType.kind, this.extractArrayRefs(detection.configNode, primitiveType.configProperty));
@@ -195,91 +248,82 @@ export class AgentTraverser {
         return result;
     }
     /**
-     * Extract array references from an object literal property.
-     * Handles both inline arrays and variable references (Identifiers).
+     * Extract array references from an object literal property using the
+     * shared reference resolver. Handles inline arrays, variable refs (same
+     * file and cross-file), spreads, property access, re-export barrels,
+     * and path aliases uniformly — see `reference-resolver.ts` for the
+     * supported expression shapes.
+     *
+     * On deopt (the resolver hit a dynamic expression it can't statically
+     * evaluate), emits a SARIF-style warning pointing at the offending node
+     * and keeps whatever partial value the resolver managed to produce.
+     * This is much more useful than the previous behavior — silently
+     * returning an empty list — which was the root of LUA-221.
      */
     extractArrayRefs(config, propName) {
-        const refs = [];
-        for (const prop of config.getProperties()) {
-            if (Node.isPropertyAssignment(prop) && prop.getName() === propName) {
-                const value = prop.getInitializer();
-                if (!value)
-                    continue;
-                // Resolve: inline array or variable reference to array
-                const arrayExpr = Node.isArrayLiteralExpression(value)
-                    ? value
-                    : resolveIdentifierToArray(value);
-                if (arrayExpr) {
-                    for (const element of arrayExpr.getElements()) {
-                        if (Node.isIdentifier(element)) {
-                            refs.push({ name: element.getText() });
-                        }
-                        else if (Node.isNewExpression(element)) {
-                            refs.push({ name: element.getExpression().getText() });
-                        }
-                    }
-                }
-            }
-        }
-        return refs;
-    }
-    // ===========================================================================
-    // REFERENCE RESOLUTION
-    // ===========================================================================
-    /**
-     * Resolve a primitive reference to its source file path.
-     */
-    resolveReference(ref, sourceFile) {
-        // Check imports first, fall back to same file for local definitions
-        // (e.g., const myJob = defineJob({ ... }); used in same file)
-        return findImportSource(ref.name, sourceFile, this.resolveImportPath.bind(this));
-    }
-    /**
-     * Resolve a module specifier to an absolute file path.
-     */
-    resolveImportPath(specifier, fromFile) {
-        // Handle .js extension in modern TS (NodeNext module resolution)
-        let normalized = specifier;
-        if (specifier.endsWith('.js')) {
-            normalized = specifier.slice(0, -3);
-        }
-        const extensions = ['.ts', '.tsx', '.js', '.jsx', '/index.ts', '/index.tsx', '/index.js'];
-        // Try path alias resolution first (e.g., @/tools/MyTool)
-        const aliasResolved = resolvePathAlias(normalized);
-        if (aliasResolved) {
-            for (const ext of extensions) {
-                const fullPath = ext.startsWith('/') ? path.join(aliasResolved, ext) : aliasResolved + ext;
-                if (fs.existsSync(fullPath)) {
-                    return fullPath;
-                }
-            }
-            return aliasResolved + '.ts'; // fallback
-        }
-        // Handle relative imports
-        if (normalized.startsWith('./') || normalized.startsWith('../')) {
-            const dir = path.dirname(fromFile);
-            const basePath = path.resolve(dir, normalized);
-            for (const ext of extensions) {
-                const fullPath = ext.startsWith('/') ? path.join(basePath, ext) : basePath + ext;
-                if (fs.existsSync(fullPath)) {
-                    return fullPath;
-                }
-            }
+        const prop = config.getProperty(propName);
+        if (!prop || !Node.isPropertyAssignment(prop))
+            return [];
+        const value = prop.getInitializer();
+        if (!value)
+            return [];
+        // Fresh `visited` per call — shared-across-kinds was a silent-drop bug
+        // (see comment in detectAgentInFile). `rootDir` flows through so the
+        // resolver's tsconfig-paths alias lookup uses this project's config,
+        // not process.cwd()'s (which leaks across multi-project Node runs).
+        const ctx = {
+            project: this.project,
+            rootDir: this.rootDir,
+            log: this.log.bind(this),
+        };
+        const result = resolveArrayRefs(value, ctx);
+        if (!result.confident) {
+            // Visible by default — swallowing a deopt here reproduces LUA-221.
+            console.warn(reportDeopt(result, propName));
         }
-        return null;
+        return result.value;
     }
     /**
      * Resolve dependencies for a primitive by delegating to its plugin.
+     *
+     * Belt-and-suspenders try/catch around `addSourceFileAtPath`: by
+     * construction the resolver has already loaded this path into the
+     * project, so it should always be present. But if something upstream
+     * races (a test deletes a fixture, an LSP concurrent-compile deletes
+     * a file under us, a permissions error on re-read), throwing here
+     * would abort the whole compile with a stack trace. Emit a SARIF
+     * warning and return empty instead — the primitive itself will still
+     * appear in the manifest, it just won't have its nested tools/refs
+     * resolved, which the user can then investigate.
      */
     resolveReferencesForPrimitive(metadata, sourcePath) {
         const plugin = pluginRegistry.get(metadata.kind);
         if (!plugin?.resolveReferences) {
             return [];
         }
-        const sourceFile = this.project.addSourceFileAtPath(sourcePath);
+        let sourceFile;
+        try {
+            sourceFile = this.project.addSourceFileAtPath(sourcePath);
+        }
+        catch (error) {
+            console.warn(formatSarifWarning({
+                ruleId: 'lua/missing-primitive-declaration',
+                filePath: sourcePath,
+                message: `unable to load source for ${metadata.kind} "${metadata.name}": ` +
+                    (error instanceof Error ? error.message : String(error)),
+                hint: `verify the file exists and is readable; nested references ` +
+                    `for this primitive will not be resolved`,
+            }));
+            return [];
+        }
+        // Plugins still have a `resolveImportPath` hook in their context
+        // (skill → tool resolution). Wire it to the shared resolver — both
+        // the agent-level walk and the per-primitive resolution flow now
+        // go through the same helper, so drift between them is impossible.
+        const rootDir = this.rootDir;
         const context = {
             project: this.project,
-            resolveImportPath: this.resolveImportPath.bind(this),
+            resolveImportPath: (specifier, fromFile) => resolveModuleSpecifier(specifier, fromFile, rootDir) ?? null,
             getPlugin: (kind) => pluginRegistry.get(kind),
             log: this.log.bind(this),
         };
@@ -290,8 +334,20 @@ export class AgentTraverser {
     // ===========================================================================
     /**
      * Extract a primitive's metadata using its plugin's detect() method.
+     *
+     * Matching order:
+     * 1. If the ref reached the target via `import x from './t'`, prefer the
+     *    default export on the target side — the consumer-side binding name
+     *    (`x`) is arbitrary and won't line up with the target's exportName.
+     *    Without this, a file with both a default-exported primitive and a
+     *    named one would emit a spurious "missing primitive" warning just
+     *    because `detected.length !== 1`.
+     * 2. Otherwise match by `exportName` or `name` equal to `refName`.
+     * 3. Singleton fallback: if the file declares exactly one primitive of
+     *    this kind, assume it's the one the user meant (covers inline
+     *    `export default defineJob({...})` single-primitive files).
      */
-    extractPrimitive(kind, sourcePath, refName) {
+    extractPrimitive(kind, sourcePath, refName, opts = {}) {
         const plugin = pluginRegistry.get(kind);
         if (!plugin) {
             this.log(`⚠️  No plugin registered for kind: ${kind}`);
@@ -300,16 +356,65 @@ export class AgentTraverser {
         try {
             const file = this.project.addSourceFileAtPath(sourcePath);
             const detected = plugin.detect(file);
-            const match = detected.find((d) => d.exportName === refName ||
-                d.name === refName) || (detected.length === 1 ? detected[0] : null);
+            // Tier 1: `isDefaultExport` flag set by the plugin. Populated by
+            //   `export default new LuaX({...})` and `export default defineX({...})`
+            //   (inline shapes that `detectDefaultExport` can see directly).
+            let defaultMatch = opts.viaDefaultImport
+                ? detected.find((d) => d.isDefaultExport)
+                : undefined;
+            // Tier 2: the `export default <identifier>` shape. Plugins only
+            // flag `isDefaultExport` when the export assignment's expression
+            // is itself a `new X({...})` / `defineX({...})` — they don't
+            // chase an Identifier back to its declaration. When the user
+            // wrote `const chosen = new LuaX({...}); export default chosen`,
+            // `chosen` has `exportName === 'chosen'` and `isDefaultExport`
+            // is false, but semantically it IS the default export.
+            //
+            // We resolve this at match time by inspecting the file's
+            // ExportAssignments: if one points at an Identifier whose name
+            // equals a detected primitive's `exportName`, that primitive is
+            // the default export by reference.
+            if (opts.viaDefaultImport && !defaultMatch) {
+                for (const assign of file.getExportAssignments()) {
+                    if (assign.isExportEquals())
+                        continue;
+                    const expr = assign.getExpression();
+                    if (!Node.isIdentifier(expr))
+                        continue;
+                    const targetName = expr.getText();
+                    defaultMatch = detected.find((d) => d.exportName === targetName);
+                    if (defaultMatch)
+                        break;
+                }
+            }
+            const match = defaultMatch ??
+                detected.find((d) => d.exportName === refName ||
+                    d.name === refName) ??
+                (detected.length === 1 ? detected[0] : null);
             if (!match) {
-                this.log(`⚠️  Could not find ${kind} "${refName}" in ${sourcePath}`);
+                // Visible by default, not gated on `debug`. The agent referenced
+                // a primitive we located on disk but the plugin couldn't find one
+                // in that file — the primitive silently drops out of the manifest
+                // unless the user knows to look, which is exactly the kind of
+                // silence LUA-221 taught us to eliminate.
+                console.warn(formatSarifWarning({
+                    ruleId: 'lua/missing-primitive-declaration',
+                    filePath: sourcePath,
+                    message: `agent references ${kind} "${refName}" but ${path.basename(sourcePath)} ` +
+                        `does not define a matching primitive`,
+                    hint: `export a named ${plugin.displayName.toLowerCase()} declaration as "${refName}", ` +
+                        `or adjust the import so it points to the file that does`,
+                }));
                 return null;
             }
             return match;
         }
         catch (error) {
-            this.log(`⚠️  Error extracting ${kind} from ${sourcePath}: ${error}`);
+            console.warn(formatSarifWarning({
+                ruleId: 'lua/missing-primitive-declaration',
+                filePath: sourcePath,
+                message: `error extracting ${kind} "${refName}": ${error instanceof Error ? error.message : String(error)}`,
+            }));
         }
         return null;
     }

package/dist/compiler/agent-traverser.js.map

@@ -1 +1 @@
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package/dist/compiler/compiler.d.ts

@@ -13,6 +13,22 @@ export declare class Compiler {
     private project;
     private options;
     private bundler;
+    /**
+     * Absolute paths of source files loaded by `AgentTraverser` that live
+     * outside `rootDir` but inside the containing workspace.
+     *
+     * Populated during `scanForPrimitives()` and consumed by
+     * `collectProjectFiles()` so cross-root files are included in the
+     * backup manifest. See BAC-69 and [workspace.ts](src/compiler/utils/workspace.ts).
+     */
+    private externalWorkspaceFiles;
+    /**
+     * Memoized workspace root. `findWorkspaceRoot` walks the tree + hits FS
+     * markers (pnpm-workspace.yaml, lerna.json, etc.) — cheap but not free,
+     * and called from three different hot paths (scan, collect, store).
+     * Populated lazily via `getWorkspaceRoot()`.
+     */
+    private _workspaceRoot?;
     constructor(options: CompilerOptions);
     /**
      * Run the compilation.
@@ -27,6 +43,22 @@ export declare class Compiler {
      * Also caches the agent info for manifest creation (avoids re-traversing).
      */
     private scanForPrimitives;
+    /**
+     * Resolve the containing workspace root for this compilation, memoized
+     * for the lifetime of the Compiler instance. Returns the normalized
+     * absolute path; for standalone agents it's identical to `rootDir`.
+     */
+    private getWorkspaceRoot;
+    /**
+     * Return absolute paths of files the traverser loaded that live outside
+     * `rootDir` but inside the containing workspace.
+     *
+     * We deliberately skip:
+     *  - Files under `rootDir` (the normal `collectProjectFiles` walker handles them)
+     *  - Files inside `node_modules` (third-party; restored via `npm install`)
+     *  - Files outside the detected workspace root (not our code)
+     */
+    private collectExternalWorkspaceFiles;
     /**
      * Fallback discovery: scan all source files for primitives when no LuaAgent is found.
      *

package/dist/compiler/compiler.d.ts.map

@@ -1 +1 @@
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