loom-browser 0.0.7 → 0.0.9

package/dist/loom.esm.js

@@ -5045,8 +5045,11 @@ class WebWorkerPool {
         this.readyPromises = [];
         for (let i = 0; i < count; i++) {
             const worker = createWorker();
-            // Ready handshake
-            const readyPromise = new Promise((resolveReady) => {
+            // Ready handshake — rejects on worker error so awaiting fetches
+            // don't hang forever if the worker script fails to load.
+            let rejectReady;
+            const readyPromise = new Promise((resolveReady, rej) => {
+                rejectReady = rej;
                 const onReady = (e) => {
                     if (e.data.type === 'ready') {
                         resolveReady();
@@ -5054,6 +5057,8 @@ class WebWorkerPool {
                 };
                 worker.addEventListener('message', onReady, { once: true });
             });
+            // Prevent unhandled rejection warnings if worker fails before any fetch
+            readyPromise.catch(() => { });
             this.readyPromises.push(readyPromise);
             worker.onmessage = (e) => {
                 const msg = e.data;
@@ -5093,6 +5098,7 @@ class WebWorkerPool {
             };
             worker.onerror = (e) => {
                 const error = new Error(`Worker error: ${e.message}`);
+                rejectReady(error);
                 for (const { reject } of this.pending.values())
                     reject(error);
                 this.pending.clear();
@@ -5357,10 +5363,12 @@ class BaseTrackCanvas {
         ctx.fillRect(0, 0, width, height);
         if (this._error) {
             this.renderError(ctx, width, height);
+            this.renderLabelOverlay(ctx, width, height);
             return;
         }
         if (this._zoomedOut) {
             this.renderZoomInNotice(ctx, width, height);
+            this.renderLabelOverlay(ctx, width, height);
             return;
         }
         const bpPerPixel = (this._locus.end - this._locus.start) / width;
@@ -5391,6 +5399,14 @@ class BaseTrackCanvas {
         ctx.textBaseline = 'middle';
         ctx.fillText('Zoom in to see features', width / 2, height / 2);
     }
+    /**
+     * Render the track name label overlay. Called after error/zoom-in notices
+     * so labels remain visible even when the track can't render data.
+     * No-op by default — subclasses with name labels should override.
+     */
+    renderLabelOverlay(_ctx, _width, _height) {
+        // No-op — subclasses override
+    }
     /**
      * Render this track onto an arbitrary context (e.g. Canvas2SVG for SVG export).
      * Skips DPR scaling and canvas-element lifecycle — draws directly at the given
@@ -5405,10 +5421,12 @@ class BaseTrackCanvas {
         ctx.fillRect(0, 0, width, height);
         if (this._error) {
             this.renderError(ctx, width, height);
+            this.renderLabelOverlay(ctx, width, height);
             return;
         }
         if (this._zoomedOut) {
             this.renderZoomInNotice(ctx, width, height);
+            this.renderLabelOverlay(ctx, width, height);
             return;
         }
         const bpPerPixel = (this._locus.end - this._locus.start) / width;
@@ -6129,6 +6147,16 @@ class AnnotationTrackCanvas extends BaseTrackCanvas {
     getBackground() {
         return this.background;
     }
+    renderLabelOverlay(ctx, _width, height) {
+        var _a;
+        if (this._name) {
+            renderTrackNameLabel(ctx, {
+                name: this._name,
+                background: this.background,
+                labelColor: (_a = this.config.labelColor) !== null && _a !== void 0 ? _a : '#333',
+            }, height);
+        }
+    }
     doRender(ctx, _width, _height, rc) {
         var _a;
         // Ensure label background matches track background so clearRect doesn't
@@ -7219,15 +7247,18 @@ class WigTrackCanvas extends BaseTrackCanvas {
     getBackground() {
         return this.config.background;
     }
+    renderLabelOverlay(ctx, _width, height) {
+        if (this._name) {
+            renderTrackNameLabel(ctx, {
+                name: this._name,
+                background: this.config.background,
+                labelColor: this.config.labelColor,
+            }, height);
+        }
+    }
     doRender(ctx, _width, height, rc) {
         if (this.features.length === 0) {
-            if (this._name) {
-                renderTrackNameLabel(ctx, {
-                    name: this._name,
-                    background: this.config.background,
-                    labelColor: this.config.labelColor,
-                }, height);
-            }
+            this.renderLabelOverlay(ctx, _width, height);
             return;
         }
         // Apply value scaling (normalize then scaleFactor), matching igv.js getFeatures() order.
@@ -9835,6 +9866,15 @@ class InteractionTrackCanvas extends BaseTrackCanvas {
     getBackground() {
         return this.config.background;
     }
+    renderLabelOverlay(ctx, _width, height) {
+        if (this._name) {
+            renderTrackNameLabel(ctx, {
+                name: this._name,
+                background: this._config.background,
+                labelColor: '#333',
+            }, height);
+        }
+    }
     doRender(ctx, _width, _height, rc) {
         renderInteractionTrack(ctx, this.features, this._config, rc, this._name ? {
             name: this._name,
@@ -10872,6 +10912,19 @@ function isDataSourceWorkerProvider(obj) {
         && typeof o.fetch === 'function'
         && typeof o.destroy === 'function';
 }
+/** Check if an error is an AbortError (from fetch abort, signal abort, or worker abort). */
+function isAbortError(err) {
+    if (err instanceof DOMException && err.name === 'AbortError')
+        return true;
+    if (err instanceof Error && err.name === 'AbortError')
+        return true;
+    // Worker-relayed abort errors may arrive as plain Error with the browser's
+    // abort message (e.g., "signal is aborted without reason") because the
+    // worker-side DOMException check can miss non-DOMException abort errors.
+    if (err instanceof Error && err.message.includes('aborted'))
+        return true;
+    return false;
+}
 const BrowserEvent = {
     LocusChange: 'locuschange',
     TrackAdded: 'trackadded',
@@ -10932,6 +10985,8 @@ class HeadlessGenomeBrowser {
         this.inflightFetches = new Map();
         /** Timer for debouncing data loads during rapid zoom/pan. */
         this.loadDebounceTimer = null;
+        /** Set to true by dispose() to suppress post-dispose promise handlers. */
+        this._disposed = false;
         /** When true, sortTracks() is a no-op. Used for batch track additions (e.g. loadSession). */
         this._deferSort = false;
         this.events = new EventEmitter();
@@ -11296,6 +11351,17 @@ class HeadlessGenomeBrowser {
         }
         return undefined;
     }
+    /** Remove a specific ROI set by instance. Returns true if found and removed. */
+    removeROISet(set) {
+        const idx = this.roiSets.indexOf(set);
+        if (idx < 0)
+            return false;
+        this.roiSets.splice(idx, 1);
+        for (const roi of set.features) {
+            this.events.emit(BrowserEvent.ROIRemoved, { roi, set });
+        }
+        return true;
+    }
     /** Remove all ROI sets. */
     clearROIs() {
         this.roiSets = [];
@@ -11837,6 +11903,11 @@ class HeadlessGenomeBrowser {
     }
     /** Clean up event listeners, abort in-flight requests, clear tracks and ROIs. */
     dispose() {
+        this._disposed = true;
+        if (this.loadDebounceTimer !== null) {
+            clearTimeout(this.loadDebounceTimer);
+            this.loadDebounceTimer = null;
+        }
         this.events.removeAllListeners();
         if (this.popupProvider)
             this.popupProvider.dispose();
@@ -11980,12 +12051,16 @@ class HeadlessGenomeBrowser {
                 this.events.emit(BrowserEvent.DataLoaded, { track: mt.track });
             })
                 .catch(err => {
-                // AbortErrors propagate from the source track's abort — ignore them
-                if (err instanceof DOMException && err.name === 'AbortError')
+                if (this._disposed || isAbortError(err))
                     return;
                 const error = err instanceof Error ? err : new Error(String(err));
-                console.error('[loom] Data fetch error (dedup):', error);
-                mt.track.setError(error);
+                if (mt.cache) {
+                    console.warn('[loom] Data fetch failed (dedup), showing cached data:', error.message);
+                }
+                else {
+                    console.error('[loom] Data fetch error (dedup):', error);
+                    mt.track.setError(error);
+                }
                 this.events.emit(BrowserEvent.DataError, { track: mt.track, error });
             });
             return;
@@ -12012,12 +12087,20 @@ class HeadlessGenomeBrowser {
             this.events.emit(BrowserEvent.DataLoaded, { track: mt.track });
         })
             .catch(err => {
-            if (!controller.signal.aborted) {
-                const error = err instanceof Error ? err : new Error(String(err));
+            if (this._disposed || controller.signal.aborted || isAbortError(err))
+                return;
+            const error = err instanceof Error ? err : new Error(String(err));
+            // If we have cached data, keep showing it (stale) rather than
+            // replacing it with an error message. Only show error if there's
+            // nothing to display at all.
+            if (mt.cache) {
+                console.warn('[loom] Data fetch failed, showing cached data:', error.message);
+            }
+            else {
                 console.error('[loom] Data fetch error:', error);
                 mt.track.setError(error);
-                this.events.emit(BrowserEvent.DataError, { track: mt.track, error });
             }
+            this.events.emit(BrowserEvent.DataError, { track: mt.track, error });
         })
             .finally(() => {
             var _a;
@@ -12890,8 +12973,16 @@ class GenomeBrowser extends HeadlessGenomeBrowser {
                 document.addEventListener("mousedown", this.handleDocMouseDown);
             }
         }
-        // Re-render tracks when container resizes (e.g. first layout in Shadow DOM)
-        this.resizeObserver = new ResizeObserver(() => this.render());
+        // Re-render tracks when container resizes (e.g. first layout in Shadow DOM).
+        // Also trigger data loads if width went from 0 → non-zero (common in React
+        // flex layouts where the container hasn't laid out when GenomeBrowser is created).
+        this.resizeObserver = new ResizeObserver(() => {
+            const prevWidth = this._viewportWidth;
+            this.render(); // updates _viewportWidth from container.clientWidth
+            if (prevWidth === 0 && this._viewportWidth > 0) {
+                this.loadAllTracksIfNeeded();
+            }
+        });
         this.resizeObserver.observe(container);
         // Axis content is updated in two places:
         // 1. After super.render() in render() — handles resize, pan, initial load