loom-browser 0.0.1

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Files changed (290) hide show
  1. package/LICENSE +21 -0
  2. package/README.md +287 -0
  3. package/dist/igv.d.ts +667 -0
  4. package/dist/igv.esm.js +76708 -0
  5. package/dist/igv.esm.min.js +26 -0
  6. package/dist/igv.esm.min.js.map +1 -0
  7. package/dist/igv.js +76716 -0
  8. package/dist/igv.min.js +26 -0
  9. package/dist/igv.min.js.map +1 -0
  10. package/dist/loom.d.ts +667 -0
  11. package/dist/loom.esm.js +14927 -0
  12. package/dist/loom.esm.min.js +2 -0
  13. package/dist/loom.esm.min.js.map +1 -0
  14. package/dist/loom.js +15114 -0
  15. package/dist/loom.min.js +2 -0
  16. package/dist/loom.min.js.map +1 -0
  17. package/dist/types/agent/index.d.ts +4 -0
  18. package/dist/types/agent/stateProjection.d.ts +115 -0
  19. package/dist/types/agent/trackSelector.d.ts +31 -0
  20. package/dist/types/baseTrackCanvas.d.ts +62 -0
  21. package/dist/types/bigwig/binaryParser.d.ts +25 -0
  22. package/dist/types/bigwig/bpTree.d.ts +40 -0
  23. package/dist/types/bigwig/bwReader.d.ts +69 -0
  24. package/dist/types/bigwig/chromTree.d.ts +28 -0
  25. package/dist/types/bigwig/index.d.ts +66 -0
  26. package/dist/types/bigwig/inflate.d.ts +9 -0
  27. package/dist/types/bigwig/rangeReader.d.ts +48 -0
  28. package/dist/types/bigwig/rpTree.d.ts +27 -0
  29. package/dist/types/canvasProvider.d.ts +36 -0
  30. package/dist/types/commandDispatcher.d.ts +199 -0
  31. package/dist/types/contextMenu.d.ts +64 -0
  32. package/dist/types/contextMenuProvider.d.ts +25 -0
  33. package/dist/types/data/cachedSequence.d.ts +19 -0
  34. package/dist/types/data/ucscApi.d.ts +21 -0
  35. package/dist/types/data/ucscSequence.d.ts +19 -0
  36. package/dist/types/dataLifecycle.d.ts +16 -0
  37. package/dist/types/dataSources/bigWigDataSource.d.ts +24 -0
  38. package/dist/types/dataSources/dataSourceCacheKey.d.ts +9 -0
  39. package/dist/types/dataSources/dynseqDataSource.d.ts +20 -0
  40. package/dist/types/dataSources/featureSourceFactory.d.ts +46 -0
  41. package/dist/types/dataSources/geneDataSource.d.ts +16 -0
  42. package/dist/types/dataSources/gtxDataSource.d.ts +42 -0
  43. package/dist/types/dataSources/sequenceDataSource.d.ts +15 -0
  44. package/dist/types/dataSources/textFeatureSource.d.ts +63 -0
  45. package/dist/types/decode/bed.d.ts +64 -0
  46. package/dist/types/decode/bedpe.d.ts +36 -0
  47. package/dist/types/decode/exonUtils.d.ts +29 -0
  48. package/dist/types/decode/gff.d.ts +58 -0
  49. package/dist/types/decode/interact.d.ts +19 -0
  50. package/dist/types/decode/ucsc.d.ts +56 -0
  51. package/dist/types/dynseqRenderer.d.ts +37 -0
  52. package/dist/types/events.d.ts +23 -0
  53. package/dist/types/export/canvas2svg.d.ts +166 -0
  54. package/dist/types/export/index.d.ts +2 -0
  55. package/dist/types/featureCache.d.ts +69 -0
  56. package/dist/types/formats/featureParser.d.ts +72 -0
  57. package/dist/types/formats/formatDetection.d.ts +46 -0
  58. package/dist/types/geneRenderer.d.ts +17 -0
  59. package/dist/types/geneThemes.d.ts +11 -0
  60. package/dist/types/geneTrackCanvas.d.ts +46 -0
  61. package/dist/types/genome/chromAlias.d.ts +46 -0
  62. package/dist/types/genome/chromSizes.d.ts +53 -0
  63. package/dist/types/genome/genome.d.ts +51 -0
  64. package/dist/types/genomeBrowser.d.ts +189 -0
  65. package/dist/types/gtx/fetchCoordinator.d.ts +34 -0
  66. package/dist/types/gtx/gtxReader.d.ts +144 -0
  67. package/dist/types/gtx/index.d.ts +40 -0
  68. package/dist/types/gtx/zstdWasm.d.ts +22 -0
  69. package/dist/types/headlessGenomeBrowser.d.ts +450 -0
  70. package/dist/types/index.d.ts +123 -0
  71. package/dist/types/intervalTree.d.ts +56 -0
  72. package/dist/types/io/binaryParser.d.ts +25 -0
  73. package/dist/types/io/index.d.ts +7 -0
  74. package/dist/types/io/rangeReader.d.ts +48 -0
  75. package/dist/types/locusUtils.d.ts +37 -0
  76. package/dist/types/pack.d.ts +41 -0
  77. package/dist/types/popupProvider.d.ts +22 -0
  78. package/dist/types/remoteProtocol.d.ts +79 -0
  79. package/dist/types/renderTheme.d.ts +72 -0
  80. package/dist/types/renderThemePresets.d.ts +16 -0
  81. package/dist/types/roi/index.d.ts +3 -0
  82. package/dist/types/roi/roiRenderer.d.ts +24 -0
  83. package/dist/types/roi/roiSet.d.ts +41 -0
  84. package/dist/types/rulerRenderer.d.ts +14 -0
  85. package/dist/types/rulerTrackCanvas.d.ts +32 -0
  86. package/dist/types/sequence/sequenceUtils.d.ts +44 -0
  87. package/dist/types/session.d.ts +55 -0
  88. package/dist/types/src/bigwig/index.d.ts +66 -0
  89. package/dist/types/src/canvasProvider.d.ts +36 -0
  90. package/dist/types/src/commandDispatcher.d.ts +220 -0
  91. package/dist/types/src/contextMenu.d.ts +64 -0
  92. package/dist/types/src/contextMenuProvider.d.ts +25 -0
  93. package/dist/types/src/data/cachedSequence.d.ts +19 -0
  94. package/dist/types/src/data/ucscApi.d.ts +21 -0
  95. package/dist/types/src/data/ucscSequence.d.ts +19 -0
  96. package/dist/types/src/dataLifecycle.d.ts +16 -0
  97. package/dist/types/src/dataSources/bigWigDataSource.d.ts +24 -0
  98. package/dist/types/src/dataSources/dataSourceCacheKey.d.ts +9 -0
  99. package/dist/types/src/dataSources/featureSourceFactory.d.ts +46 -0
  100. package/dist/types/src/dataSources/geneDataSource.d.ts +16 -0
  101. package/dist/types/src/dataSources/gtxDataSource.d.ts +42 -0
  102. package/dist/types/src/dataSources/sequenceDataSource.d.ts +15 -0
  103. package/dist/types/src/dataSources/textFeatureSource.d.ts +63 -0
  104. package/dist/types/src/decode/bed.d.ts +64 -0
  105. package/dist/types/src/decode/bedpe.d.ts +36 -0
  106. package/dist/types/src/decode/exonUtils.d.ts +29 -0
  107. package/dist/types/src/decode/gff.d.ts +58 -0
  108. package/dist/types/src/decode/interact.d.ts +19 -0
  109. package/dist/types/src/decode/ucsc.d.ts +56 -0
  110. package/dist/types/src/events.d.ts +23 -0
  111. package/dist/types/src/export/canvas2svg.d.ts +166 -0
  112. package/dist/types/src/export/index.d.ts +2 -0
  113. package/dist/types/src/featureCache.d.ts +69 -0
  114. package/dist/types/src/formats/featureParser.d.ts +72 -0
  115. package/dist/types/src/formats/formatDetection.d.ts +46 -0
  116. package/dist/types/src/genome/chromAlias.d.ts +46 -0
  117. package/dist/types/src/genome/chromSizes.d.ts +53 -0
  118. package/dist/types/src/genome/genome.d.ts +51 -0
  119. package/dist/types/src/genomeBrowser.d.ts +189 -0
  120. package/dist/types/src/gtx/fetchCoordinator.d.ts +34 -0
  121. package/dist/types/src/gtx/gtxReader.d.ts +144 -0
  122. package/dist/types/src/gtx/index.d.ts +40 -0
  123. package/dist/types/src/gtx/zstdWasm.d.ts +22 -0
  124. package/dist/types/src/headlessGenomeBrowser.d.ts +450 -0
  125. package/dist/types/src/index.d.ts +123 -0
  126. package/dist/types/src/intervalTree.d.ts +56 -0
  127. package/dist/types/src/io/binaryParser.d.ts +25 -0
  128. package/dist/types/src/io/index.d.ts +7 -0
  129. package/dist/types/src/io/rangeReader.d.ts +48 -0
  130. package/dist/types/src/locusUtils.d.ts +37 -0
  131. package/dist/types/src/pack.d.ts +41 -0
  132. package/dist/types/src/popupProvider.d.ts +22 -0
  133. package/dist/types/src/remoteProtocol.d.ts +81 -0
  134. package/dist/types/src/roi/index.d.ts +3 -0
  135. package/dist/types/src/roi/roiRenderer.d.ts +24 -0
  136. package/dist/types/src/roi/roiSet.d.ts +41 -0
  137. package/dist/types/src/sequence/sequenceUtils.d.ts +44 -0
  138. package/dist/types/src/session.d.ts +55 -0
  139. package/dist/types/src/stateProjection.d.ts +115 -0
  140. package/dist/types/src/tabix/index.d.ts +48 -0
  141. package/dist/types/src/themes/index.d.ts +3 -0
  142. package/dist/types/src/themes/renderTheme.d.ts +86 -0
  143. package/dist/types/src/themes/renderThemePresets.d.ts +16 -0
  144. package/dist/types/src/trackRegistry.d.ts +81 -0
  145. package/dist/types/src/trackSelector.d.ts +31 -0
  146. package/dist/types/src/tracks/annotation/annotationRenderer.d.ts +17 -0
  147. package/dist/types/src/tracks/annotation/annotationThemes.d.ts +11 -0
  148. package/dist/types/src/tracks/annotation/annotationTrackCanvas.d.ts +58 -0
  149. package/dist/types/src/tracks/annotation/index.d.ts +4 -0
  150. package/dist/types/src/tracks/axis/axisRenderer.d.ts +19 -0
  151. package/dist/types/src/tracks/axis/index.d.ts +1 -0
  152. package/dist/types/src/tracks/baseTrackCanvas.d.ts +113 -0
  153. package/dist/types/src/tracks/dynseq/dynseqRenderer.d.ts +38 -0
  154. package/dist/types/src/tracks/dynseq/index.d.ts +1 -0
  155. package/dist/types/src/tracks/index.d.ts +7 -0
  156. package/dist/types/src/tracks/interaction/index.d.ts +4 -0
  157. package/dist/types/src/tracks/interaction/interactionRenderer.d.ts +52 -0
  158. package/dist/types/src/tracks/interaction/interactionTrackCanvas.d.ts +54 -0
  159. package/dist/types/src/tracks/ruler/index.d.ts +3 -0
  160. package/dist/types/src/tracks/ruler/rulerRenderer.d.ts +25 -0
  161. package/dist/types/src/tracks/ruler/rulerTrackCanvas.d.ts +43 -0
  162. package/dist/types/src/tracks/sequence/index.d.ts +5 -0
  163. package/dist/types/src/tracks/sequence/sequenceRenderer.d.ts +34 -0
  164. package/dist/types/src/tracks/sequence/sequenceThemes.d.ts +11 -0
  165. package/dist/types/src/tracks/sequence/sequenceTrackCanvas.d.ts +67 -0
  166. package/dist/types/src/tracks/wig/index.d.ts +5 -0
  167. package/dist/types/src/tracks/wig/wigRenderer.d.ts +15 -0
  168. package/dist/types/src/tracks/wig/wigSummary.d.ts +31 -0
  169. package/dist/types/src/tracks/wig/wigThemes.d.ts +15 -0
  170. package/dist/types/src/tracks/wig/wigTrackCanvas.d.ts +82 -0
  171. package/dist/types/src/types.d.ts +885 -0
  172. package/dist/types/src/ui/components/LoomBrowserShell.d.ts +52 -0
  173. package/dist/types/src/ui/components/LoomChromosomeSelect.d.ts +18 -0
  174. package/dist/types/src/ui/components/LoomContextMenu.d.ts +39 -0
  175. package/dist/types/src/ui/components/LoomExportControls.d.ts +13 -0
  176. package/dist/types/src/ui/components/LoomInputDialog.d.ts +27 -0
  177. package/dist/types/src/ui/components/LoomLocusInput.d.ts +18 -0
  178. package/dist/types/src/ui/components/LoomNavbar.d.ts +15 -0
  179. package/dist/types/src/ui/components/LoomPopup.d.ts +32 -0
  180. package/dist/types/src/ui/components/LoomWindowSize.d.ts +14 -0
  181. package/dist/types/src/ui/components/LoomZoomControls.d.ts +10 -0
  182. package/dist/types/src/ui/index.d.ts +21 -0
  183. package/dist/types/src/ui/themes.d.ts +14 -0
  184. package/dist/types/src/worker/nodeWorkerProvider.d.ts +28 -0
  185. package/dist/types/src/worker/taskHandler.d.ts +15 -0
  186. package/dist/types/src/worker/webWorkerProvider.d.ts +51 -0
  187. package/dist/types/src/worker/workerScript.d.ts +11 -0
  188. package/dist/types/src/workerProvider.d.ts +76 -0
  189. package/dist/types/stateProjection.d.ts +115 -0
  190. package/dist/types/tabix/bgzBlockLoader.d.ts +60 -0
  191. package/dist/types/tabix/bgzf.d.ts +43 -0
  192. package/dist/types/tabix/index.d.ts +48 -0
  193. package/dist/types/tabix/tabixIndex.d.ts +85 -0
  194. package/dist/types/tabix/tabixReader.d.ts +60 -0
  195. package/dist/types/tabix/virtualOffset.d.ts +41 -0
  196. package/dist/types/test/src/mockCanvasProvider.d.ts +67 -0
  197. package/dist/types/test/src/testBedDecode.d.ts +1 -0
  198. package/dist/types/test/src/testCanvas2SVG.d.ts +7 -0
  199. package/dist/types/test/src/testChromAlias.d.ts +1 -0
  200. package/dist/types/test/src/testCommandDispatcher.d.ts +1 -0
  201. package/dist/types/test/src/testData.d.ts +7 -0
  202. package/dist/types/test/src/testDataLifecycle.d.ts +1 -0
  203. package/dist/types/test/src/testDataSourceCacheKey.d.ts +1 -0
  204. package/dist/types/test/src/testDataSources.d.ts +5 -0
  205. package/dist/types/test/src/testDecodeUcsc.d.ts +1 -0
  206. package/dist/types/test/src/testEvents.d.ts +1 -0
  207. package/dist/types/test/src/testFeatureCache.d.ts +1 -0
  208. package/dist/types/test/src/testFeatureParser.d.ts +1 -0
  209. package/dist/types/test/src/testFormatDetection.d.ts +1 -0
  210. package/dist/types/test/src/testGffDecode.d.ts +1 -0
  211. package/dist/types/test/src/testHeadlessBrowser.d.ts +1 -0
  212. package/dist/types/test/src/testInteractionDecoder.d.ts +1 -0
  213. package/dist/types/test/src/testIntervalTree.d.ts +1 -0
  214. package/dist/types/test/src/testLocusUtils.d.ts +1 -0
  215. package/dist/types/test/src/testPack.d.ts +1 -0
  216. package/dist/types/test/src/testROI.d.ts +1 -0
  217. package/dist/types/test/src/testRemoteProtocol.d.ts +1 -0
  218. package/dist/types/test/src/testRenderTheme.d.ts +1 -0
  219. package/dist/types/test/src/testSVGExport.d.ts +5 -0
  220. package/dist/types/test/src/testSequence.d.ts +1 -0
  221. package/dist/types/test/src/testSession.d.ts +1 -0
  222. package/dist/types/test/src/testTrackSelector.d.ts +1 -0
  223. package/dist/types/test/src/testTrackSerialize.d.ts +1 -0
  224. package/dist/types/test/src/testWigSummary.d.ts +1 -0
  225. package/dist/types/test/src/testWorkerDispatch.d.ts +9 -0
  226. package/dist/types/themes/index.d.ts +3 -0
  227. package/dist/types/themes/renderTheme.d.ts +86 -0
  228. package/dist/types/themes/renderThemePresets.d.ts +16 -0
  229. package/dist/types/trackRegistry.d.ts +81 -0
  230. package/dist/types/trackSelector.d.ts +31 -0
  231. package/dist/types/tracks/annotation/annotationRenderer.d.ts +17 -0
  232. package/dist/types/tracks/annotation/annotationThemes.d.ts +11 -0
  233. package/dist/types/tracks/annotation/annotationTrackCanvas.d.ts +58 -0
  234. package/dist/types/tracks/annotation/index.d.ts +4 -0
  235. package/dist/types/tracks/axis/axisRenderer.d.ts +19 -0
  236. package/dist/types/tracks/axis/index.d.ts +1 -0
  237. package/dist/types/tracks/baseTrackCanvas.d.ts +113 -0
  238. package/dist/types/tracks/dynseq/dynseqRenderer.d.ts +38 -0
  239. package/dist/types/tracks/dynseq/index.d.ts +1 -0
  240. package/dist/types/tracks/gene/geneRenderer.d.ts +17 -0
  241. package/dist/types/tracks/gene/geneThemes.d.ts +11 -0
  242. package/dist/types/tracks/gene/geneTrackCanvas.d.ts +58 -0
  243. package/dist/types/tracks/gene/index.d.ts +4 -0
  244. package/dist/types/tracks/index.d.ts +7 -0
  245. package/dist/types/tracks/interaction/index.d.ts +4 -0
  246. package/dist/types/tracks/interaction/interactionRenderer.d.ts +52 -0
  247. package/dist/types/tracks/interaction/interactionTrackCanvas.d.ts +54 -0
  248. package/dist/types/tracks/ruler/index.d.ts +3 -0
  249. package/dist/types/tracks/ruler/rulerRenderer.d.ts +25 -0
  250. package/dist/types/tracks/ruler/rulerTrackCanvas.d.ts +43 -0
  251. package/dist/types/tracks/sequence/index.d.ts +5 -0
  252. package/dist/types/tracks/sequence/sequenceRenderer.d.ts +34 -0
  253. package/dist/types/tracks/sequence/sequenceThemes.d.ts +11 -0
  254. package/dist/types/tracks/sequence/sequenceTrackCanvas.d.ts +67 -0
  255. package/dist/types/tracks/wig/index.d.ts +5 -0
  256. package/dist/types/tracks/wig/wigRenderer.d.ts +15 -0
  257. package/dist/types/tracks/wig/wigSummary.d.ts +31 -0
  258. package/dist/types/tracks/wig/wigThemes.d.ts +15 -0
  259. package/dist/types/tracks/wig/wigTrackCanvas.d.ts +82 -0
  260. package/dist/types/types.d.ts +885 -0
  261. package/dist/types/ui/components/IgvBrowserShell.d.ts +52 -0
  262. package/dist/types/ui/components/IgvChromosomeSelect.d.ts +18 -0
  263. package/dist/types/ui/components/IgvExportControls.d.ts +13 -0
  264. package/dist/types/ui/components/IgvLocusInput.d.ts +18 -0
  265. package/dist/types/ui/components/IgvNavbar.d.ts +15 -0
  266. package/dist/types/ui/components/IgvWindowSize.d.ts +14 -0
  267. package/dist/types/ui/components/IgvZoomControls.d.ts +10 -0
  268. package/dist/types/ui/components/LoomBrowserShell.d.ts +52 -0
  269. package/dist/types/ui/components/LoomChromosomeSelect.d.ts +18 -0
  270. package/dist/types/ui/components/LoomContextMenu.d.ts +39 -0
  271. package/dist/types/ui/components/LoomExportControls.d.ts +13 -0
  272. package/dist/types/ui/components/LoomInputDialog.d.ts +27 -0
  273. package/dist/types/ui/components/LoomLocusInput.d.ts +18 -0
  274. package/dist/types/ui/components/LoomNavbar.d.ts +15 -0
  275. package/dist/types/ui/components/LoomPopup.d.ts +32 -0
  276. package/dist/types/ui/components/LoomWindowSize.d.ts +14 -0
  277. package/dist/types/ui/components/LoomZoomControls.d.ts +10 -0
  278. package/dist/types/ui/index.d.ts +21 -0
  279. package/dist/types/ui/themes.d.ts +14 -0
  280. package/dist/types/wigRenderer.d.ts +15 -0
  281. package/dist/types/wigSummary.d.ts +31 -0
  282. package/dist/types/wigThemes.d.ts +15 -0
  283. package/dist/types/wigTrackCanvas.d.ts +46 -0
  284. package/dist/types/worker/decodeWig.d.ts +20 -0
  285. package/dist/types/worker/nodeWorkerProvider.d.ts +28 -0
  286. package/dist/types/worker/taskHandler.d.ts +15 -0
  287. package/dist/types/worker/webWorkerProvider.d.ts +51 -0
  288. package/dist/types/worker/workerScript.d.ts +11 -0
  289. package/dist/types/workerProvider.d.ts +76 -0
  290. package/package.json +102 -0

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