loki-mode 7.104.4 → 7.104.5

package/SKILL.md

@@ -3,7 +3,7 @@ name: loki-mode
 description: Autonomous spec-driven build system with a built-in trust layer. It does not call work done until it is verified (RARV-C closure loop, 8 quality gates, completion council, verified-completion evidence gate). Triggers on "Loki Mode". Takes a spec (PRD, GitHub issue, OpenAPI doc, etc.) to deployed product with minimal human intervention. Provider-agnostic. Requires --dangerously-skip-permissions flag.
 ---
 
-# Loki Mode v7.104.4
+# Loki Mode v7.104.5
 
 **You are an autonomous agent. You make decisions. You do not ask questions. You do not stop.**
 
@@ -408,4 +408,4 @@ See `CHANGELOG.md` entries [7.5.7], [7.5.8], [7.5.13] for the per-fix list and r
 
 ---
 
-**v7.104.4 | [Autonomi](https://www.autonomi.dev/) flagship product | ~260 lines core**
+**v7.104.5 | [Autonomi](https://www.autonomi.dev/) flagship product | ~260 lines core**

package/VERSION

@@ -1 +1 @@
-7.104.4
+7.104.5

package/dashboard/__init__.py

@@ -7,7 +7,7 @@ Modules:
     control: Session control API (start/stop/pause/resume)
 """
 
-__version__ = "7.104.4"
+__version__ = "7.104.5"
 
 # Expose the control app for easy import
 try:

package/dashboard/server.py

@@ -5007,41 +5007,79 @@ def _sanitize_agent_id(agent_id: str) -> str:
         )
     return agent_id
 
+
+# --- Memory file enumeration (single source of truth) ------------------------
+# v7.104.5 (PR #178 follow-up): the memory store writes episodes and skills into
+# DATED subdirectories (episodic/YYYY-MM-DD/*.json, skills/*/*.json), so a flat
+# .glob("*.json") finds nothing and every endpoint that used it under-reported.
+# PR #178 fixed only /api/memory/summary; the sibling /api/memory/episodes and
+# the skills listings still used a flat glob, so the count and the drill-in list
+# disagreed (summary said 28, the list returned 0) -- a trust-eroding
+# inconsistency. These two helpers are the ONE way to enumerate memory files, so
+# counts and lists can never diverge again. Both recurse and skip .lock files.
+def _memory_episode_files(ep_dir) -> list:
+    """All episode JSON files under episodic/ (recursing dated subdirs), sorted."""
+    try:
+        return sorted(p for p in ep_dir.rglob("*.json") if not p.name.endswith(".lock"))
+    except Exception:
+        return []
+
+
+def _memory_skill_files(skills_dir) -> list:
+    """All skill JSON files under skills/ (recursing subdirs), sorted."""
+    try:
+        return sorted(p for p in skills_dir.rglob("*.json") if not p.name.endswith(".lock"))
+    except Exception:
+        return []
+
+
 @app.get("/api/memory/summary", dependencies=[Depends(auth.require_scope("read"))])
 async def get_memory_summary():
     """Get memory system summary from .loki/memory/."""
-    # Try SQLite backend first for accurate counts
+    # Try SQLite backend first for accurate counts.
+    # NOTE (PR #178, @iizotov): _get_memory_storage() returns a SQLiteMemoryStorage
+    # object whenever the module imports, even if no .db file exists yet. On a
+    # JSON-backed project that yields all-zero stats, so we must NOT return here on
+    # empty counts -- otherwise the JSON file fallback below never runs and the
+    # dashboard shows 0 episodes/patterns/skills even though they exist on disk.
+    # Only trust SQLite when it actually reports data; else fall through to JSON.
     storage = _get_memory_storage()
     if storage is not None:
         try:
             stats = storage.get_stats()
-            summary = {
-                "episodic": {"count": stats.get("episode_count", 0), "latestDate": None},
-                "semantic": {"patterns": stats.get("pattern_count", 0), "antiPatterns": 0},
-                "procedural": {"skills": stats.get("skill_count", 0)},
-                "backend": "sqlite",
-            }
-            # Get latest episode date
-            episode_ids = storage.list_episodes(limit=1)
-            if episode_ids:
-                ep = storage.load_episode(episode_ids[0])
-                if ep:
-                    summary["episodic"]["latestDate"] = ep.get("timestamp", "")
-            # Token economics from JSON (not in SQLite)
-            econ_file = _get_loki_dir() / "memory" / "token_economics.json"
-            if econ_file.exists():
-                try:
-                    econ = json.loads(econ_file.read_text())
-                    summary["tokenEconomics"] = {
-                        "discoveryTokens": econ.get("discoveryTokens", 0),
-                        "readTokens": econ.get("readTokens", 0),
-                        "savingsPercent": econ.get("savingsPercent", 0),
-                    }
-                except Exception:
+            total = (
+                stats.get("episode_count", 0)
+                + stats.get("pattern_count", 0)
+                + stats.get("skill_count", 0)
+            )
+            if total > 0:
+                summary = {
+                    "episodic": {"count": stats.get("episode_count", 0), "latestDate": None},
+                    "semantic": {"patterns": stats.get("pattern_count", 0), "antiPatterns": 0},
+                    "procedural": {"skills": stats.get("skill_count", 0)},
+                    "backend": "sqlite",
+                }
+                # Get latest episode date
+                episode_ids = storage.list_episodes(limit=1)
+                if episode_ids:
+                    ep = storage.load_episode(episode_ids[0])
+                    if ep:
+                        summary["episodic"]["latestDate"] = ep.get("timestamp", "")
+                # Token economics from JSON (not in SQLite)
+                econ_file = _get_loki_dir() / "memory" / "token_economics.json"
+                if econ_file.exists():
+                    try:
+                        econ = json.loads(econ_file.read_text())
+                        summary["tokenEconomics"] = {
+                            "discoveryTokens": econ.get("discoveryTokens", 0),
+                            "readTokens": econ.get("readTokens", 0),
+                            "savingsPercent": econ.get("savingsPercent", 0),
+                        }
+                    except Exception:
+                        summary["tokenEconomics"] = {"discoveryTokens": 0, "readTokens": 0, "savingsPercent": 0}
+                else:
                     summary["tokenEconomics"] = {"discoveryTokens": 0, "readTokens": 0, "savingsPercent": 0}
-            else:
-                summary["tokenEconomics"] = {"discoveryTokens": 0, "readTokens": 0, "savingsPercent": 0}
-            return summary
+                return summary
         except Exception:
             pass
 
@@ -5057,14 +5095,28 @@ async def get_memory_summary():
 
     ep_dir = memory_dir / "episodic"
     if ep_dir.exists():
-        episodes = sorted(ep_dir.glob("*.json"))
+        # Episodes are stored under dated subdirectories (episodic/YYYY-MM-DD/*.json),
+        # so a flat glob("*.json") finds nothing (PR #178, @iizotov). Recurse and
+        # ignore .lock files. Shared with /api/memory/episodes via _memory_episode_
+        # files() so the summary count and the drill-in list can never disagree.
+        episodes = _memory_episode_files(ep_dir)
         summary["episodic"]["count"] = len(episodes)
         if episodes:
-            try:
-                latest = json.loads(episodes[-1].read_text())
-                summary["episodic"]["latestDate"] = latest.get("timestamp", "")
-            except Exception:
-                pass
+            # latestDate must be the newest by RECORDED TIMESTAMP, not by filename
+            # sort: intra-day filenames carry a hash tiebreak, not a time, so a
+            # filename sort can report the wrong episode (observed ~15h off). Pick
+            # the max parsed timestamp; fall back to the last file only if no
+            # timestamp is readable, so an honest value is preferred over a
+            # confidently-wrong one.
+            latest_ts = ""
+            for _epf in episodes:
+                try:
+                    _ts = json.loads(_epf.read_text()).get("timestamp", "")
+                    if isinstance(_ts, str) and _ts > latest_ts:
+                        latest_ts = _ts
+                except Exception:
+                    continue
+            summary["episodic"]["latestDate"] = latest_ts or None
 
     sem_dir = memory_dir / "semantic"
     patterns_file = sem_dir / "patterns.json"
@@ -5084,7 +5136,7 @@ async def get_memory_summary():
 
     skills_dir = memory_dir / "skills"
     if skills_dir.exists():
-        summary["procedural"]["skills"] = len(list(skills_dir.glob("*.json")))
+        summary["procedural"]["skills"] = len(_memory_skill_files(skills_dir))
 
     econ_file = memory_dir / "token_economics.json"
     if econ_file.exists():
@@ -5122,20 +5174,22 @@ async def list_episodes(limit: int = Query(default=50, ge=1, le=1000)):
             except Exception:
                 pass
 
-        # Fallback to JSON files -- use heapq to avoid sorting all files
-        import heapq
+        # Fallback to JSON files. Enumerate via the shared helper (recurses the
+        # dated subdirs) so this list agrees with /api/memory/summary's count --
+        # the flat glob here was the exact parity gap PR #178's review flagged
+        # (summary said 28, this returned 0). Read each file, then return the
+        # newest `limit` by RECORDED timestamp (not filename, whose intra-day
+        # tiebreak is a hash, not a time).
         ep_dir = _get_loki_dir() / "memory" / "episodic"
-        episodes = []
+        loaded = []
         if ep_dir.exists():
-            all_files = ep_dir.glob("*.json")
-            # nlargest by filename (timestamps sort lexicographically) avoids full sort
-            files = heapq.nlargest(limit, all_files, key=lambda f: f.name)
-            for f in files:
+            for f in _memory_episode_files(ep_dir):
                 try:
-                    episodes.append(json.loads(f.read_text()))
+                    loaded.append(json.loads(f.read_text()))
                 except Exception:
                     pass
-        return episodes
+        loaded.sort(key=lambda e: e.get("timestamp", "") if isinstance(e, dict) else "", reverse=True)
+        return loaded[:limit]
 
     return await asyncio.to_thread(_load_episodes)
 
@@ -5159,7 +5213,7 @@ async def get_episode(episode_id: str):
     if not ep_dir.exists():
         raise HTTPException(status_code=404, detail="Episode not found")
     real_loki = os.path.realpath(str(loki_dir))
-    for f in ep_dir.glob("*.json"):
+    for f in _memory_episode_files(ep_dir):
         resolved = os.path.realpath(f)
         if not resolved.startswith(real_loki + os.sep) and resolved != real_loki:
             raise HTTPException(status_code=403, detail="Access denied")
@@ -5235,7 +5289,7 @@ async def list_skills():
         skills_dir = _get_loki_dir() / "memory" / "skills"
         skills = []
         if skills_dir.exists():
-            for f in sorted(skills_dir.glob("*.json")):
+            for f in _memory_skill_files(skills_dir):
                 try:
                     skills.append(json.loads(f.read_text()))
                 except Exception:
@@ -5253,7 +5307,7 @@ async def get_skill(skill_id: str):
     if not skills_dir.exists():
         raise HTTPException(status_code=404, detail="Skill not found")
     real_loki = os.path.realpath(str(loki_dir))
-    for f in skills_dir.glob("*.json"):
+    for f in _memory_skill_files(skills_dir):
         resolved = os.path.realpath(f)
         if not resolved.startswith(real_loki + os.sep) and resolved != real_loki:
             raise HTTPException(status_code=403, detail="Access denied")
@@ -5699,11 +5753,7 @@ async def get_memory_stats():
         ep_count = 0
         ep_dir = memory_dir / "episodic"
         if ep_dir.exists():
-            for d in ep_dir.iterdir():
-                if d.is_dir():
-                    ep_count += len(list(d.glob("*.json")))
-                elif d.suffix == ".json":
-                    ep_count += 1
+            ep_count = len(_memory_episode_files(ep_dir))
 
         pat_count = 0
         patterns_file = memory_dir / "semantic" / "patterns.json"
@@ -5717,7 +5767,7 @@ async def get_memory_stats():
         skill_count = 0
         skills_dir = memory_dir / "skills"
         if skills_dir.exists():
-            skill_count = len(list(skills_dir.glob("*.json")))
+            skill_count = len(_memory_skill_files(skills_dir))
 
         return {
             "backend": "json",

package/docs/INSTALLATION.md

@@ -2,7 +2,7 @@
 
 The flagship product of [Autonomi](https://www.autonomi.dev/). Loki Mode is a spec-driven autonomous builder with a built-in trust layer that takes any spec to a deployed product and verifies completion with evidence (quality gates plus a completion council), not just a "done" claim. Complete installation instructions for all platforms and use cases.
 
-**Version:** v7.104.4
+**Version:** v7.104.5
 
 ---
 

package/loki-ts/dist/loki.js

@@ -1,5 +1,5 @@
 // @bun
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+var X8=Object.defineProperty;var K8=($)=>$;function q8($,Q){this[$]=K8.bind(null,Q)}var b=($,Q)=>{for(var Z in Q)X8($,Z,{get:Q[Z],enumerable:!0,configurable:!0,set:q8.bind(Q,Z)})};var L=($,Q)=>()=>($&&(Q=$($=0)),Q);var J$=import.meta.require;var v1={};b(v1,{lokiDir:()=>P,homeLokiDir:()=>T$,findRepoRootForVersion:()=>e$,REPO_ROOT:()=>h});import{resolve as r,dirname as i$}from"path";import{fileURLToPath as J8}from"url";import{existsSync as x$}from"fs";import{homedir as V8}from"os";function W8(){let $=y1;for(let Q=0;Q<6;Q++){if(x$(r($,"VERSION"))&&x$(r($,"autonomy/run.sh")))return $;let Z=i$($);if(Z===$)break;$=Z}return r(y1,"..","..","..")}function e$($){let Q=$;for(let Z=0;Z<6;Z++){if(x$(r(Q,"VERSION"))&&x$(r(Q,"autonomy/run.sh")))return Q;let z=i$(Q);if(z===Q)break;Q=z}return r($,"..","..","..")}function P(){return process.env.LOKI_DIR??r(process.cwd(),".loki")}function T$(){return r(V8(),".loki")}var y1,h;var C=L(()=>{y1=i$(J8(import.meta.url));h=W8()});import{readFileSync as U8}from"fs";import{resolve as H8,dirname as G8}from"path";import{fileURLToPath as B8}from"url";function N$(){if(Q$!==null)return Q$;let $="7.104.5";if(typeof $==="string"&&$.length>0)return Q$=$,Q$;try{let Q=G8(B8(import.meta.url)),Z=e$(Q);Q$=U8(H8(Z,"VERSION"),"utf-8").trim()}catch{Q$="unknown"}return Q$}var Q$=null;var $1=L(()=>{C()});var c1={};b(c1,{runOrThrow:()=>x8,run:()=>F,readStreamCapped:()=>u1,commandVersion:()=>S8,commandExists:()=>f,ShellError:()=>Q1,MAX_STDOUT_BYTES:()=>f1});async function u1($,Q=f1){let Z=$.getReader(),z=new TextDecoder,X="",q=0;try{while(q<Q){let{done:K,value:W}=await Z.read();if(K)break;if(!W)continue;if(q+=W.byteLength,q>Q){let V=W.byteLength-(q-Q);X+=z.decode(W.subarray(0,V),{stream:!0});break}X+=z.decode(W,{stream:!0})}X+=z.decode()}finally{try{await Z.cancel()}catch{}Z.releaseLock()}return X}async function F($,Q={}){let Z=Bun.spawn({cmd:[...$],stdout:"pipe",stderr:"pipe",env:Q.env?{...process.env,...Q.env}:process.env,cwd:Q.cwd}),z,X;if(Q.timeoutMs&&Q.timeoutMs>0)z=setTimeout(()=>{try{Z.kill("SIGTERM")}catch{}X=setTimeout(()=>{try{Z.kill("SIGKILL")}catch{}},2000)},Q.timeoutMs);try{let[q,K,W]=await Promise.all([u1(Z.stdout),new Response(Z.stderr).text(),Z.exited]);return{stdout:q,stderr:K,exitCode:W}}finally{if(z)clearTimeout(z);if(X)clearTimeout(X)}}async function x8($,Q={}){let Z=await F($,Q);if(Z.exitCode!==0)throw new Q1(`command failed (${Z.exitCode}): ${$.join(" ")}`,Z.exitCode,Z.stdout,Z.stderr);return Z}async function f($){let Q=N8($),Z=await F(["sh","-c",`command -v ${Q}`],{timeoutMs:5000});if(Z.exitCode===0)return Z.stdout.trim()||null;return null}function N8($){if(!/^[A-Za-z0-9._/-]+$/.test($))throw Error(`refused to shell-escape suspect token: ${$}`);return $}async function S8($,Q="--version"){if(!await f($))return null;let z=await F([$,Q],{timeoutMs:5000});if(z.exitCode!==0)return null;return((z.stdout||z.stderr).split(/\r?\n/)[0]?.trim()??"")||null}var f1=16777216,Q1;var d=L(()=>{Q1=class Q1 extends Error{message;exitCode;stdout;stderr;constructor($,Q,Z,z){super($);this.message=$;this.exitCode=Q;this.stdout=Z;this.stderr=z;this.name="ShellError"}}});function t($){return D8?"":$}var D8,T,S,_,nZ,I,k,y,J;var c=L(()=>{D8=(process.env.NO_COLOR??"").length>0;T=t("\x1B[0;31m"),S=t("\x1B[0;32m"),_=t("\x1B[1;33m"),nZ=t("\x1B[0;34m"),I=t("\x1B[0;36m"),k=t("\x1B[1m"),y=t("\x1B[2m"),J=t("\x1B[0m")});import{existsSync as c8}from"fs";async function Z$(){if(A$!==void 0)return A$;let $="/opt/homebrew/bin/python3.12";if(c8($))return A$=$,$;let Q=await f("python3.12");if(Q)return A$=Q,Q;let Z=await f("python3");return A$=Z,Z}async function z$($,Q={}){let Z=await Z$();if(!Z)return{stdout:"",stderr:"python3 not found",exitCode:127};return F([Z,"-c",$],Q)}var A$;var V$=L(()=>{d()});var J0={};b(J0,{runStatus:()=>U3});import{existsSync as v,readFileSync as U$,readdirSync as e1,statSync as $0}from"fs";import{resolve as D,basename as Q3}from"path";import{homedir as Z3}from"os";function Q0($){let Q=Math.trunc($);if(Q>=1e6)return`${(Math.trunc(Q/1e6*10)/10).toFixed(1)}M`;if(Q>=1000)return`${(Math.trunc(Q/1000*10)/10).toFixed(1)}K`;return String(Q)}function Z0($,Q,Z){if(Q===0)return null;let z=Math.trunc($*100/Q),X=Math.trunc($*D$/Q);if(X>D$)X=D$;let q=D$-X,K=S;if(z>=80)K=T;else if(z>=50)K=_;let W="=".repeat(Math.max(0,X))+" ".repeat(Math.max(0,q)),V=Q0($),U=Q0(Q);return`  ${k}${Z}${J} ${K}[${W}]${J} ${z}% (${V} / ${U})`}async function X3(){if(await f("jq"))return!0;return process.stdout.write(`${T}Error: jq is required but not installed.${J}
 `),process.stdout.write(`Install with:
 `),process.stdout.write(`  brew install jq    (macOS)
 `),process.stdout.write(`  apt install jq     (Debian/Ubuntu)
@@ -805,4 +805,4 @@ Set LOKI_LEGACY_BASH=1 to force the bash CLI for every command.
 `),2}default:return process.stderr.write(`Unknown command: ${Q}
 `),process.stderr.write(z8),2}}i1();process.on("SIGINT",()=>process.exit(130));process.on("SIGTERM",()=>process.exit(143));var EZ=await RZ(Bun.argv.slice(2));process.exit(EZ);
 
-//# debugId=61E42E2EF5F94BA264756E2164756E21
+//# debugId=CD7A0B6FD83A195A64756E2164756E21

package/mcp/__init__.py

@@ -57,4 +57,4 @@ try:
 except ImportError:
     __all__ = ['mcp']
 
-__version__ = '7.104.4'
+__version__ = '7.104.5'

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "loki-mode",
   "mcpName": "io.github.asklokesh/loki-mode",
-  "version": "7.104.4",
+  "version": "7.104.5",
   "description": "Loki Mode by Autonomi. Autonomous spec-to-product system: takes a PRD, GitHub issue, OpenAPI/JSON/YAML, or one-line brief to a deployed app via the RARV-C closure loop with 8 quality gates. Provider-agnostic (Claude Code, OpenAI Codex, Cline, Aider).",
   "keywords": [
     "agent",

package/plugins/loki-mode/.claude-plugin/plugin.json

@@ -2,7 +2,7 @@
   "$schema": "https://json.schemastore.org/claude-code-plugin-manifest.json",
   "name": "loki-mode",
   "displayName": "Loki Mode",
-  "version": "7.104.4",
+  "version": "7.104.5",
   "description": "Autonomous spec-to-product build system with a built-in trust layer (RARV-C closure loop, 8 quality gates, completion council). Ships Loki's spec-hardening, drift-detection, and deterministic PR verification commands plus the Loki MCP server.",
   "author": {
     "name": "Autonomi",