living-documentation 7.11.0 → 7.13.0

package/README.md

@@ -10,6 +10,18 @@ No cloud, no database, no build step — just point it at a folder where you add
 
 ## Features
 
+### Reliability gauge — keep your docs honest
+
+Living Documentation's flagship feature: each document can be **bound to the source files it describes**, so you can see at a glance whether it has drifted from the code.
+
+- **Bind source files** to any doc via the `🗂 Metadata` button in the doc header — pick any file under `sourceRoot` (your project root, configurable in Admin). Each binding stores the file's SHA-256 hash.
+- **Reliability gauge** in the sticky doc header — a red → orange → yellow → green gradient bar that fills up as `reliability = unchanged / total`. If every bound file still matches its hash, the bar is full and green; as soon as one file is modified or deleted, the gauge drops and the colour shifts. Hidden when the doc has no bindings. Click it to open the metadata modal.
+- **Metadata Files popup** (top bar `📁 Metadata Files`) — central place to list, **replace** or **delete** every file uploaded under `DOCS_FOLDER/files/` (PDFs, specs, mockups attached to docs). After a replace/delete, the popup closes and the search bar is auto-filled with `metadata://<filename>` so you immediately see which documents still reference it.
+- **`metadata://<filename>` search prefix** — reverse-lookup documents by the source files they're bound to. Useful to answer "which docs am I supposed to update now that I've changed this PDF/class/module?".
+- **MCP tools** (`list_metadata`, `get_accuracy`, `add_metadata`, `refresh_metadata`) — AI agents can detect drift, read the source & the doc, rewrite the doc and re-baseline the hashes autonomously.
+
+### Other features
+
 - **Sidebar** grouped by folder → category, sorted alphabetically; **General** always first
 [![README Diagrams](./images/readme-sidebar.png)](/diagram?id=d1775399110713)
 
@@ -224,16 +236,21 @@ living-documentation/
 │   │   ├── wordcloud.ts         Word cloud raw text reader
 │   │   ├── diagrams.ts          Diagrams CRUD API (vis-network JSON)
 │   │   ├── annotations.ts       Per-document highlight markers API
+│   │   ├── metadata.ts          Source-file bindings + reliability report
+│   │   ├── browse-source.ts     Source tree navigator (rooted at sourceRoot)
 │   │   └── export.ts            HTML export (PDF, Notion, Confluence zip)
 │   ├── mcp/
 │   │   ├── server.ts            Model Context Protocol server (Streamable HTTP)
 │   │   └── tools/
 │   │       ├── documents.ts     MCP tools: list/read/create document
 │   │       ├── diagrams.ts      MCP tools: list/read/create diagram
-│   │       └── source.ts        MCP tools: list/read/search source files
+│   │       ├── source.ts        MCP tools: list/read/search source files
+│   │       └── metadata.ts      MCP tools: list_metadata, get_accuracy, add_metadata, refresh_metadata
 │   ├── lib/
 │   │   ├── parser.ts            Filename parser
-│   │   └── config.ts            Config management (.living-doc.json)
+│   │   ├── config.ts            Config management (.living-doc.json)
+│   │   ├── metadata.ts          .metadata.json store + reliability formula
+│   │   └── hash.ts              sha256File helper
 │   └── frontend/
 │       ├── index.html           Main viewer shell
 │       ├── admin.html           Admin panel
@@ -271,6 +288,14 @@ living-documentation/
 | `POST`   | `/api/browse/mkdir`            | Create a new folder under the docs root                            |
 | `POST`   | `/api/images/upload`           | Upload a base64 image; saved to `DOCS_FOLDER/images/`              |
 | `POST`   | `/api/files/upload`            | Upload a base64 file attachment; saved to `DOCS_FOLDER/files/`     |
+| `GET`    | `/api/files`                   | List every file under `DOCS_FOLDER/files/` (chronological)         |
+| `PUT`    | `/api/files/:filename`         | Replace an existing attachment with a new base64 payload           |
+| `DELETE` | `/api/files/:filename`         | Delete an attachment                                               |
+| `GET`    | `/api/metadata/:docId`         | Reliability report for one doc (per-entry status + score)          |
+| `POST`   | `/api/metadata/:docId`         | Add or replace a source-file binding for a doc                     |
+| `DELETE` | `/api/metadata/:docId`         | Remove a binding                                                   |
+| `POST`   | `/api/metadata/:docId/refresh` | Re-hash all bindings (re-baseline after the doc has been updated)  |
+| `GET`    | `/api/browse-source?path=`     | Navigate the source tree rooted at `sourceRoot`                    |
 | `GET`    | `/api/diagrams`                | List saved diagrams                                                |
 | `GET`    | `/api/diagrams/:id`            | Read a single diagram (nodes + edges)                              |
 | `PUT`    | `/api/diagrams/:id`            | Create or update a diagram                                         |
@@ -317,6 +342,10 @@ A `GET http://localhost:4321/mcp` returns a JSON summary of available tools for
 | `list_source_files` | List project source files under `sourceRoot` (fallback only) |
 | `read_source_file` | Read a source file under `sourceRoot` (fallback only) |
 | `search_source` | Grep-like text search across files under `sourceRoot` |
+| `list_metadata` | List the source-file bindings of every doc |
+| `get_accuracy` | Get the reliability report of a doc (per-entry status + ratio) — detect drift |
+| `add_metadata` | Bind a source file to a doc (stores the SHA-256 hash) |
+| `refresh_metadata` | Re-hash all bindings for a doc — re-baseline after the doc has been rewritten |
 
 Prompts (`generate-context-diagram`, `generate-container-diagram`, `generate-uml-diagram`, `update-diagram-from-docs`, `generate-screen-guide`, `flow`, `erd`) are exposed alongside the tools for clients that surface MCP prompts to the user.
 

package/dist/src/frontend/accuracy-gauge.js

@@ -29,7 +29,10 @@ function renderAccuracyGauge(report) {
   if (label) label.textContent = window.t("accuracy.label");
   if (bar) {
     bar.style.width = pct + "%";
-    bar.style.backgroundColor = color;
+    // The gradient spans the full track width, so we stretch the background
+    // to (100/pct)× the bar width — this way the bar only shows the left
+    // portion of the red→green gradient corresponding to its percentage.
+    bar.style.backgroundSize = pct > 0 ? `${10000 / pct}% 100%` : "100% 100%";
   }
   if (value) {
     value.textContent = pct + "%";

package/dist/src/frontend/i18n/en.json

@@ -100,11 +100,11 @@
   "metadata.add": "Add source file",
   "metadata.refresh": "Refresh hashes",
   "metadata.remove": "Remove",
-  "metadata.empty": "No metadata yet — add a source file to start tracking accuracy.",
+  "metadata.empty": "No metadata yet — add a source file to start tracking reliability.",
   "metadata.status.unchanged": "Unchanged",
   "metadata.status.modified": "Modified",
   "metadata.status.missing": "Missing",
-  "accuracy.label": "Accuracy",
+  "accuracy.label": "Reliability",
   "accuracy.tooltip": "Unchanged: {unchanged} · Modified: {modified} · Missing: {missing} · Total: {total}",
 
   "modal.new_folder.title": "New folder",

package/dist/src/frontend/i18n/fr.json

@@ -104,7 +104,7 @@
   "metadata.status.unchanged": "Inchangé",
   "metadata.status.modified": "Modifié",
   "metadata.status.missing": "Manquant",
-  "accuracy.label": "Justesse",
+  "accuracy.label": "Fiabilité",
   "accuracy.tooltip": "Inchangés : {unchanged} · Modifiés : {modified} · Manquants : {missing} · Total : {total}",
 
   "modal.new_folder.title": "Nouveau dossier",

package/dist/src/frontend/index.html

@@ -647,20 +647,20 @@
               <div
                 id="accuracy-gauge"
                 onclick="openMetadataModal()"
-                class="hidden no-print mt-3 flex items-center gap-3 ml-auto w-full sm:w-80 cursor-pointer select-none"
+                class="hidden no-print mt-5 flex items-center gap-3 mr-auto w-full sm:w-80 cursor-pointer select-none"
               >
                 <span
                   id="accuracy-gauge-label"
                   data-i18n="accuracy.label"
                   class="text-xs text-gray-500 dark:text-gray-400 shrink-0"
-                >Accuracy</span>
+                >Reliability</span>
                 <div
-                  class="flex-1 h-2 rounded-full bg-gray-200 dark:bg-gray-700 overflow-hidden"
+                  class="flex-1 h-4 rounded-full bg-gray-200 dark:bg-gray-700 overflow-hidden"
                 >
                   <div
                     id="accuracy-gauge-bar"
                     class="h-full transition-all"
-                    style="width: 0%; background-color: #9ca3af"
+                    style="width: 0%; background: linear-gradient(to right, #dc2626, #f97316, #eab308, #16a34a); background-size: 100% 100%; background-repeat: no-repeat;"
                   ></div>
                 </div>
                 <span

package/dist/src/lib/metadata.d.ts

@@ -27,4 +27,5 @@ export declare function classifyEntry(entry: MetadataEntry, sourceRoot: string):
 export declare function buildReport(entries: MetadataEntry[], sourceRoot: string): AccuracyReport;
 export declare function getDocEntries(docsPath: string, docId: string): MetadataEntry[];
 export declare function setDocEntries(docsPath: string, docId: string, entries: MetadataEntry[]): void;
+export declare function getFrontmatterField(content: string, key: string): string | null;
 //# sourceMappingURL=metadata.d.ts.map

package/dist/src/lib/metadata.d.ts.map

@@ -1 +1 @@
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package/dist/src/lib/metadata.js

@@ -12,6 +12,7 @@ exports.classifyEntry = classifyEntry;
 exports.buildReport = buildReport;
 exports.getDocEntries = getDocEntries;
 exports.setDocEntries = setDocEntries;
+exports.getFrontmatterField = getFrontmatterField;
 const fs_1 = __importDefault(require("fs"));
 const path_1 = __importDefault(require("path"));
 const config_1 = require("./config");
@@ -102,4 +103,29 @@ function setDocEntries(docsPath, docId, entries) {
         store[docId] = entries;
     writeMetadataStore(docsPath, store);
 }
+// Reads a frontmatter field from a Markdown document. Supports the two
+// conventions used in this project: YAML block (`---\nkey: value\n---`) and
+// ADR-style inline (`**key:** value` in the opening lines). Returns null when
+// not found. Case-insensitive on the key.
+function getFrontmatterField(content, key) {
+    const k = key.toLowerCase();
+    const head = content.slice(0, 4096);
+    if (head.startsWith("---")) {
+        const end = head.indexOf("\n---", 3);
+        if (end !== -1) {
+            const block = head.slice(3, end);
+            for (const line of block.split("\n")) {
+                const m = /^\s*([A-Za-z0-9_-]+)\s*:\s*(.+?)\s*$/.exec(line);
+                if (m && m[1].toLowerCase() === k)
+                    return m[2];
+            }
+        }
+    }
+    for (const line of head.split("\n", 30)) {
+        const m = /^\s*\*\*([A-Za-z0-9_-]+)\s*:\s*\*\*\s*(.+?)\s*$/.exec(line);
+        if (m && m[1].toLowerCase() === k)
+            return m[2];
+    }
+    return null;
+}
 //# sourceMappingURL=metadata.js.map

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@@ -1 +1 @@
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+{"version":3,"file":"metadata.js","sourceRoot":"","sources":["../../../src/lib/metadata.ts"],"names":[],"mappings":";;;;;AAgCA,oCAEC;AAED,8CAQC;AAED,gDASC;AAED,8CAOC;AAED,sDAaC;AAED,sCAsBC;AAID,kCAgBC;AAED,sCAMC;AAED,sCASC;AAMD,kDAwBC;AA5KD,4CAAoB;AACpB,gDAAwB;AACxB,qCAAsC;AACtC,iCAAoC;AA2BpC,MAAM,iBAAiB,GAAG,gBAAgB,CAAC;AAE3C,SAAgB,YAAY,CAAC,QAAgB;IAC3C,OAAO,cAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,iBAAiB,CAAC,CAAC;AAChD,CAAC;AAED,SAAgB,iBAAiB,CAAC,QAAgB;IAChD,MAAM,CAAC,GAAG,YAAY,CAAC,QAAQ,CAAC,CAAC;IACjC,IAAI,CAAC,YAAE,CAAC,UAAU,CAAC,CAAC,CAAC;QAAE,OAAO,EAAE,CAAC;IACjC,IAAI,CAAC;QACH,OAAO,IAAI,CAAC,KAAK,CAAC,YAAE,CAAC,YAAY,CAAC,CAAC,EAAE,OAAO,CAAC,CAAC,CAAC;IACjD,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC;AAED,SAAgB,kBAAkB,CAChC,QAAgB,EAChB,KAAoB;IAEpB,YAAE,CAAC,aAAa,CACd,YAAY,CAAC,QAAQ,CAAC,EACtB,IAAI,CAAC,SAAS,CAAC,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC,EAC9B,OAAO,CACR,CAAC;AACJ,CAAC;AAED,SAAgB,iBAAiB,CAAC,QAAgB;IAChD,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,mBAAU,EAAC,QAAQ,CAAC,CAAC;IAC5C,MAAM,QAAQ,GACZ,UAAU,IAAI,cAAI,CAAC,UAAU,CAAC,UAAU,CAAC;QACvC,CAAC,CAAC,UAAU;QACZ,CAAC,CAAC,cAAI,CAAC,OAAO,CAAC,cAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC;IAC3C,OAAO,cAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC;AAChC,CAAC;AAED,SAAgB,qBAAqB,CACnC,QAAgB,EAChB,UAAkB;IAElB,yDAAyD;IACzD,MAAM,GAAG,GAAG,cAAI,CAAC,UAAU,CAAC,QAAQ,CAAC;QACnC,CAAC,CAAC,cAAI,CAAC,OAAO,CAAC,QAAQ,CAAC;QACxB,CAAC,CAAC,cAAI,CAAC,OAAO,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC;IACvC,MAAM,IAAI,GAAG,cAAI,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,cAAI,CAAC,GAAG,CAAC;IACjD,IAAI,CAAC,GAAG,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,cAAI,CAAC,OAAO,CAAC,UAAU,CAAC,EAAE,CAAC;QAC9D,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAC;IAC7C,CAAC;IACD,OAAO,cAAI,CAAC,QAAQ,CAAC,UAAU,EAAE,GAAG,CAAC,CAAC;AACxC,CAAC;AAED,SAAgB,aAAa,CAC3B,KAAoB,EACpB,UAAkB;IAElB,MAAM,GAAG,GAAG,cAAI,CAAC,OAAO,CAAC,UAAU,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;IACjD,IAAI,CAAC,YAAE,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;QACxB,OAAO;YACL,IAAI,EAAE,KAAK,CAAC,IAAI;YAChB,UAAU,EAAE,KAAK,CAAC,IAAI;YACtB,WAAW,EAAE,IAAI;YACjB,MAAM,EAAE,SAAS;SAClB,CAAC;IACJ,CAAC;IACD,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,GAAG,CAAC,CAAC;IAChC,MAAM,MAAM,GACV,OAAO,KAAK,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,UAAU,CAAC;IACpD,OAAO;QACL,IAAI,EAAE,KAAK,CAAC,IAAI;QAChB,UAAU,EAAE,KAAK,CAAC,IAAI;QACtB,WAAW,EAAE,OAAO;QACpB,MAAM;KACP,CAAC;AACJ,CAAC;AAED,8EAA8E;AAC9E,0EAA0E;AAC1E,SAAgB,WAAW,CACzB,OAAwB,EACxB,UAAkB;IAElB,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,aAAa,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,CAAC;IAC/D,MAAM,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC;IAC3B,IAAI,SAAS,GAAG,CAAC,CAAC;IAClB,IAAI,QAAQ,GAAG,CAAC,CAAC;IACjB,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,KAAK,MAAM,EAAE,IAAI,KAAK,EAAE,CAAC;QACvB,IAAI,EAAE,CAAC,MAAM,KAAK,WAAW;YAAE,SAAS,EAAE,CAAC;aACtC,IAAI,EAAE,CAAC,MAAM,KAAK,UAAU;YAAE,QAAQ,EAAE,CAAC;;YACzC,OAAO,EAAE,CAAC;IACjB,CAAC;IACD,MAAM,QAAQ,GAAG,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,GAAG,KAAK,CAAC;IACrD,OAAO,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,CAAC;AAClE,CAAC;AAED,SAAgB,aAAa,CAC3B,QAAgB,EAChB,KAAa;IAEb,MAAM,KAAK,GAAG,iBAAiB,CAAC,QAAQ,CAAC,CAAC;IAC1C,OAAO,KAAK,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC;AAC5B,CAAC;AAED,SAAgB,aAAa,CAC3B,QAAgB,EAChB,KAAa,EACb,OAAwB;IAExB,MAAM,KAAK,GAAG,iBAAiB,CAAC,QAAQ,CAAC,CAAC;IAC1C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC,KAAK,CAAC,CAAC;;QACzC,KAAK,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC;IAC5B,kBAAkB,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;AACtC,CAAC;AAED,uEAAuE;AACvE,4EAA4E;AAC5E,8EAA8E;AAC9E,0CAA0C;AAC1C,SAAgB,mBAAmB,CACjC,OAAe,EACf,GAAW;IAEX,MAAM,CAAC,GAAG,GAAG,CAAC,WAAW,EAAE,CAAC;IAC5B,MAAM,IAAI,GAAG,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;IAEpC,IAAI,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,EAAE,CAAC;QAC3B,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC;QACrC,IAAI,GAAG,KAAK,CAAC,CAAC,EAAE,CAAC;YACf,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;YACjC,KAAK,MAAM,IAAI,IAAI,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;gBACrC,MAAM,CAAC,GAAG,sCAAsC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;gBAC5D,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,KAAK,CAAC;oBAAE,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;YACjD,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,MAAM,IAAI,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,EAAE,CAAC,EAAE,CAAC;QACxC,MAAM,CAAC,GAAG,iDAAiD,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACvE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,KAAK,CAAC;YAAE,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;IACjD,CAAC;IAED,OAAO,IAAI,CAAC;AACd,CAAC"}

package/dist/src/mcp/server.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../../src/mcp/server.ts"],"names":[],"mappings":"AAQA,OAAO,EAAE,MAAM,EAAqB,MAAM,SAAS,CAAC;AA2jCpD,wBAAgB,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CA4BlD"}
+{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../../src/mcp/server.ts"],"names":[],"mappings":"AAQA,OAAO,EAAE,MAAM,EAAqB,MAAM,SAAS,CAAC;AAkmCpD,wBAAgB,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CA4BlD"}

package/dist/src/mcp/server.js

@@ -155,14 +155,23 @@ Documents can be bound to the source files they describe. Each binding stores
 the file's SHA-256 hash so the system can detect drift between docs and code.
 
 Tools:
-- \`list_metadata(docId)\` — returns the source files attached to a doc.
-- \`get_accuracy(docId)\` — classifies each entry (\`unchanged\` / \`modified\` /
+- \`list_metadata(id)\` — returns the source files attached to a doc.
+- \`get_accuracy(id)\` — classifies each entry (\`unchanged\` / \`modified\` /
   \`missing\`) and returns a weighted \`accuracy\` in [0, 1] (missing weighs 3×
   a simple modification).
-- \`add_metadata(docId, path)\` — attach a source file (path under
+- \`add_metadata(id, path)\` — attach a source file (path under
   \`sourceRoot\`) and record its current hash.
-- \`refresh_metadata(docId)\` — re-hash every attached file. Call **after**
+- \`remove_metadata(id, path)\` — detach an entry. Idempotent (no-op
+  if the path is not attached). Use this to clean up orphans or to
+  handle renames (\`add_metadata\` new path, then
+  \`remove_metadata\` old path).
+- \`refresh_metadata(id)\` — re-hash every attached file. Call **after**
   the doc has been updated to re-align it with the current source state.
+- \`list_documents_below_accuracy()\` — audit: returns up to 10 documents
+  whose accuracy < 80%, sorted most-degraded first, plus a
+  \`totalBelowThreshold\` counter. SuperSeeded docs and docs without
+  metadata are excluded. Use this instead of looping
+  \`list_documents\` + \`get_accuracy\`.
 
 Recommended workflow to keep docs accurate:
 1. \`list_documents\` → pick a doc.
@@ -170,6 +179,13 @@ Recommended workflow to keep docs accurate:
 3. \`read_document\` and \`read_source_file\` on the \`modified\` entries.
 4. Update the doc with \`create_document\` (overwrites by id).
 5. \`refresh_metadata\` to re-baseline the hashes.
+
+Bulk audit workflow:
+1. \`list_documents_below_accuracy\` → batch of up to 10 most-degraded docs.
+2. For each item: \`read_document\` + \`read_source_file\` on modified
+   entries → update with \`create_document\` → \`refresh_metadata\`.
+3. Re-call \`list_documents_below_accuracy\` until \`totalBelowThreshold\`
+   reaches 0 or the remaining items are intentionally drifting.
 `;
 // ── Tool definitions ──────────────────────────────────────────────────────────
 const SHAPE_LIST = 'box, actor (person), database, ellipse, circle, post-it, text-free, image, anchor (invisible endpoint for free-end arrows — screen-guide only)';
@@ -396,9 +412,9 @@ const TOOLS = [
         inputSchema: {
             type: 'object',
             properties: {
-                docId: { type: 'string', description: 'Document id as returned by list_documents' },
+                id: { type: 'string', description: 'Document id as returned by list_documents' },
             },
-            required: ['docId'],
+            required: ['id'],
         },
     },
     {
@@ -413,9 +429,9 @@ const TOOLS = [
         inputSchema: {
             type: 'object',
             properties: {
-                docId: { type: 'string', description: 'Document id' },
+                id: { type: 'string', description: 'Document id' },
             },
-            required: ['docId'],
+            required: ['id'],
         },
     },
     {
@@ -428,9 +444,9 @@ const TOOLS = [
         inputSchema: {
             type: 'object',
             properties: {
-                docId: { type: 'string', description: 'Document id' },
+                id: { type: 'string', description: 'Document id' },
             },
-            required: ['docId'],
+            required: ['id'],
         },
     },
     {
@@ -439,16 +455,35 @@ const TOOLS = [
             'Attach a source file to a document as a metadata dependency. The file path must be under the configured `sourceRoot`. The current SHA-256 hash of the file is recorded.',
             '',
             'If the document already has an entry for that path, its hash is updated.',
+            '',
+            'Returns only the added entry and aggregate totals. Use `list_metadata` to retrieve the full list.',
         ].join('\n'),
         inputSchema: {
             type: 'object',
             properties: {
-                docId: { type: 'string', description: 'Document id' },
+                id: { type: 'string', description: 'Document id' },
                 path: { type: 'string', description: 'Path to the source file, relative to sourceRoot or absolute but under sourceRoot.' },
             },
-            required: ['docId', 'path'],
+            required: ['id', 'path'],
         },
     },
+    {
+        name: 'remove_metadata',
+        description: 'Remove a source-file metadata entry from a document. Use this to clean up orphan entries when a source file has been deleted or renamed (rename = add the new path then remove the old one). Idempotent: returns removed: null if the path is not currently attached. Does not touch the source file on disk — only updates the metadata.',
+        inputSchema: {
+            type: 'object',
+            properties: {
+                id: { type: 'string', description: 'Document id' },
+                path: { type: 'string', description: 'Path to the source file, relative to sourceRoot or absolute but under sourceRoot.' },
+            },
+            required: ['id', 'path'],
+        },
+    },
+    {
+        name: 'list_documents_below_accuracy',
+        description: 'List documents whose accuracy has dropped below 80%, sorted from most degraded first. Returns up to 10 documents per call along with the total count of documents below the threshold. Documents without any metadata (total = 0) and SuperSeeded documents are excluded. Use this to audit which documents need review after recent code changes.',
+        inputSchema: { type: 'object', properties: {} },
+    },
     {
         name: 'search_source',
         description: [
@@ -986,7 +1021,7 @@ function umlTypeGuidance(umlType) {
     }
 }
 function createMcpServer(docsPath) {
-    const server = new index_js_1.Server({ name: 'living-documentation', version: '1.0.0' }, {
+    const server = new index_js_1.Server({ name: 'living-documentation', version: '1.2.0' }, {
         capabilities: { tools: {}, prompts: {} },
         instructions: SERVER_GUIDE,
     });
@@ -1036,6 +1071,10 @@ function createMcpServer(docsPath) {
                     return (0, metadata_1.toolRefreshMetadata)(docsPath, args);
                 case 'add_metadata':
                     return (0, metadata_1.toolAddMetadata)(docsPath, args);
+                case 'remove_metadata':
+                    return (0, metadata_1.toolRemoveMetadata)(docsPath, args);
+                case 'list_documents_below_accuracy':
+                    return (0, metadata_1.toolListDocumentsBelowAccuracy)(docsPath);
                 default:
                     throw new Error(`Unknown tool: ${name}`);
             }
@@ -1067,7 +1106,7 @@ function mcpRouter(docsPath) {
     router.get('/', (_req, res) => {
         res.json({
             mcp: 'living-documentation',
-            version: '1.0.0',
+            version: '1.2.0',
             transport: 'streamable-http',
             endpoint: 'POST /mcp',
             tools: TOOLS.map(t => t.name),

package/dist/src/mcp/server.js.map

@@ -1 +1 @@
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package/dist/src/mcp/tools/documents.d.ts

@@ -1,3 +1,11 @@
+export interface DocSummary {
+    id: string;
+    title: string;
+    category: string;
+    folder: string | null;
+}
+export declare function listAllDocuments(docsPath: string): DocSummary[];
+export declare function resolveDocFilePath(docsPath: string, doc: DocSummary): string | null;
 export declare function toolListDocuments(docsPath: string): {
     content: {
         type: "text";

package/dist/src/mcp/tools/documents.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"documents.d.ts","sourceRoot":"","sources":["../../../../src/mcp/tools/documents.ts"],"names":[],"mappings":"AAqCA,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,MAAM;;;;;EAqCjD;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE;IAAE,EAAE,EAAE,MAAM,CAAA;CAAE;;;;;EAmBtE;AAED,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE;IACzD,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;;;;;EAiCA"}
+{"version":3,"file":"documents.d.ts","sourceRoot":"","sources":["../../../../src/mcp/tools/documents.ts"],"names":[],"mappings":"AAqCA,MAAM,WAAW,UAAU;IACzB,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;CACvB;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,GAAG,UAAU,EAAE,CA+B/D;AAED,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,EAAE,UAAU,GAAG,MAAM,GAAG,IAAI,CASnF;AAED,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,MAAM;;;;;EAGjD;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE;IAAE,EAAE,EAAE,MAAM,CAAA;CAAE;;;;;EAsBtE;AAED,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE;IACzD,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;;;;;EAiCA"}

package/dist/src/mcp/tools/documents.js

@@ -3,6 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.listAllDocuments = listAllDocuments;
+exports.resolveDocFilePath = resolveDocFilePath;
 exports.toolListDocuments = toolListDocuments;
 exports.toolReadDocument = toolReadDocument;
 exports.toolCreateDocument = toolCreateDocument;
@@ -38,17 +40,15 @@ function safeResolve(docsPath, rel) {
     const base = path_1.default.resolve(docsPath) + path_1.default.sep;
     return resolved.startsWith(base) ? resolved : null;
 }
-function toolListDocuments(docsPath) {
+function listAllDocuments(docsPath) {
     const { filenamePattern, extraFiles = [] } = (0, config_1.readConfig)(docsPath);
     const docs = [];
-    // Extra files
     for (const fp of extraFiles) {
         if (!fp.endsWith('.md') || !fs_1.default.existsSync(fp))
             continue;
         const meta = (0, parser_1.parseFilename)(path_1.default.basename(fp), filenamePattern);
         docs.push({ id: encodeURIComponent(fp.slice(0, -3)), title: meta.title, category: 'General', folder: null });
     }
-    // Regular docs (recursive)
     function scan(dir) {
         for (const entry of fs_1.default.readdirSync(dir, { withFileTypes: true })) {
             if (entry.name.startsWith('.'))
@@ -71,9 +71,26 @@ function toolListDocuments(docsPath) {
         }
     }
     scan(docsPath);
+    return docs;
+}
+function resolveDocFilePath(docsPath, doc) {
+    const { extraFiles = [] } = (0, config_1.readConfig)(docsPath);
+    const decoded = decodeURIComponent(doc.id);
+    if (path_1.default.isAbsolute(decoded)) {
+        const fp = decoded + '.md';
+        return extraFiles.includes(fp) && fs_1.default.existsSync(fp) ? fp : null;
+    }
+    const resolved = safeResolve(docsPath, decoded + '.md');
+    return resolved && fs_1.default.existsSync(resolved) ? resolved : null;
+}
+function toolListDocuments(docsPath) {
+    const docs = listAllDocuments(docsPath);
     return { content: [{ type: 'text', text: JSON.stringify(docs, null, 2) }] };
 }
 function toolReadDocument(docsPath, args) {
+    if (!args || typeof args.id !== 'string' || !args.id) {
+        throw new Error("Missing required parameter 'id'");
+    }
     const { extraFiles = [] } = (0, config_1.readConfig)(docsPath);
     const decoded = decodeURIComponent(args.id);
     let filePath;

package/dist/src/mcp/tools/documents.js.map

@@ -1 +1 @@
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package/dist/src/mcp/tools/metadata.d.ts

@@ -1,5 +1,5 @@
 export declare function toolListMetadata(docsPath: string, args: {
-    docId: string;
+    id: string;
 }): {
     content: {
         type: "text";
@@ -7,7 +7,7 @@ export declare function toolListMetadata(docsPath: string, args: {
     }[];
 };
 export declare function toolGetAccuracy(docsPath: string, args: {
-    docId: string;
+    id: string;
 }): {
     content: {
         type: "text";
@@ -15,7 +15,7 @@ export declare function toolGetAccuracy(docsPath: string, args: {
     }[];
 };
 export declare function toolRefreshMetadata(docsPath: string, args: {
-    docId: string;
+    id: string;
 }): {
     content: {
         type: "text";
@@ -23,7 +23,7 @@ export declare function toolRefreshMetadata(docsPath: string, args: {
     }[];
 };
 export declare function toolAddMetadata(docsPath: string, args: {
-    docId: string;
+    id: string;
     path: string;
 }): {
     content: {
@@ -31,4 +31,19 @@ export declare function toolAddMetadata(docsPath: string, args: {
         text: string;
     }[];
 };
+export declare function toolRemoveMetadata(docsPath: string, args: {
+    id: string;
+    path: string;
+}): {
+    content: {
+        type: "text";
+        text: string;
+    }[];
+};
+export declare function toolListDocumentsBelowAccuracy(docsPath: string): {
+    content: {
+        type: "text";
+        text: string;
+    }[];
+};
 //# sourceMappingURL=metadata.d.ts.map

package/dist/src/mcp/tools/metadata.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"metadata.d.ts","sourceRoot":"","sources":["../../../../src/mcp/tools/metadata.ts"],"names":[],"mappings":"AAoBA,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE;IAAE,KAAK,EAAE,MAAM,CAAA;CAAE;;;;;EAKzE;AAED,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE;IAAE,KAAK,EAAE,MAAM,CAAA;CAAE;;;;;EAMxE;AAED,wBAAgB,mBAAmB,CACjC,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE;IAAE,KAAK,EAAE,MAAM,CAAA;CAAE;;;;;EAaxB;AAED,wBAAgB,eAAe,CAC7B,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE;IAAE,KAAK,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE;;;;;EAsBtC"}
+{"version":3,"file":"metadata.d.ts","sourceRoot":"","sources":["../../../../src/mcp/tools/metadata.ts"],"names":[],"mappings":"AAgCA,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE;IAAE,EAAE,EAAE,MAAM,CAAA;CAAE;;;;;EAKtE;AAED,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE;IAAE,EAAE,EAAE,MAAM,CAAA;CAAE;;;;;EAMrE;AAED,wBAAgB,mBAAmB,CACjC,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE;IAAE,EAAE,EAAE,MAAM,CAAA;CAAE;;;;;EAarB;AAED,wBAAgB,eAAe,CAC7B,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE;;;;;EA2BnC;AAED,wBAAgB,kBAAkB,CAChC,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE;;;;;EAuBnC;AAED,wBAAgB,8BAA8B,CAAC,QAAQ,EAAE,MAAM;;;;;EAsD9D"}

package/dist/src/mcp/tools/metadata.js

@@ -7,10 +7,15 @@ exports.toolListMetadata = toolListMetadata;
 exports.toolGetAccuracy = toolGetAccuracy;
 exports.toolRefreshMetadata = toolRefreshMetadata;
 exports.toolAddMetadata = toolAddMetadata;
+exports.toolRemoveMetadata = toolRemoveMetadata;
+exports.toolListDocumentsBelowAccuracy = toolListDocumentsBelowAccuracy;
 const path_1 = __importDefault(require("path"));
 const fs_1 = __importDefault(require("fs"));
 const metadata_1 = require("../../lib/metadata");
 const hash_1 = require("../../lib/hash");
+const documents_1 = require("./documents");
+const ACCURACY_THRESHOLD = 0.8;
+const MAX_ITEMS = 10;
 function jsonResult(obj) {
     return {
         content: [
@@ -18,39 +23,41 @@ function jsonResult(obj) {
         ],
     };
 }
+function decodeDocId(id) {
+    if (typeof id !== "string" || !id) {
+        throw new Error("Missing required parameter 'id'");
+    }
+    return decodeURIComponent(id);
+}
 function toolListMetadata(docsPath, args) {
-    if (!args.docId)
-        throw new Error("docId is required");
+    const docId = decodeDocId(args?.id);
     const sourceRoot = (0, metadata_1.resolveSourceRoot)(docsPath);
-    const entries = (0, metadata_1.getDocEntries)(docsPath, args.docId);
-    return jsonResult({ docId: args.docId, sourceRoot, items: entries });
+    const entries = (0, metadata_1.getDocEntries)(docsPath, docId);
+    return jsonResult({ id: docId, sourceRoot, items: entries });
 }
 function toolGetAccuracy(docsPath, args) {
-    if (!args.docId)
-        throw new Error("docId is required");
+    const docId = decodeDocId(args?.id);
     const sourceRoot = (0, metadata_1.resolveSourceRoot)(docsPath);
-    const entries = (0, metadata_1.getDocEntries)(docsPath, args.docId);
+    const entries = (0, metadata_1.getDocEntries)(docsPath, docId);
     const report = (0, metadata_1.buildReport)(entries, sourceRoot);
-    return jsonResult({ docId: args.docId, ...report });
+    return jsonResult({ id: docId, ...report });
 }
 function toolRefreshMetadata(docsPath, args) {
-    if (!args.docId)
-        throw new Error("docId is required");
+    const docId = decodeDocId(args?.id);
     const sourceRoot = (0, metadata_1.resolveSourceRoot)(docsPath);
-    const entries = (0, metadata_1.getDocEntries)(docsPath, args.docId).map((e) => {
+    const entries = (0, metadata_1.getDocEntries)(docsPath, docId).map((e) => {
         const abs = path_1.default.resolve(sourceRoot, e.path);
         if (!fs_1.default.existsSync(abs))
             return e;
         const fresh = (0, hash_1.sha256File)(abs);
         return fresh ? { path: e.path, hash: fresh } : e;
     });
-    (0, metadata_1.setDocEntries)(docsPath, args.docId, entries);
+    (0, metadata_1.setDocEntries)(docsPath, docId, entries);
     const report = (0, metadata_1.buildReport)(entries, sourceRoot);
-    return jsonResult({ docId: args.docId, refreshed: true, ...report });
+    return jsonResult({ id: docId, refreshed: true, ...report });
 }
 function toolAddMetadata(docsPath, args) {
-    if (!args.docId)
-        throw new Error("docId is required");
+    const docId = decodeDocId(args?.id);
     if (!args.path)
         throw new Error("path is required");
     const sourceRoot = (0, metadata_1.resolveSourceRoot)(docsPath);
@@ -62,15 +69,84 @@ function toolAddMetadata(docsPath, args) {
     const hash = (0, hash_1.sha256File)(abs);
     if (!hash)
         throw new Error("Failed to hash file");
-    const entries = (0, metadata_1.getDocEntries)(docsPath, args.docId);
+    const entries = (0, metadata_1.getDocEntries)(docsPath, docId);
     const idx = entries.findIndex((e) => e.path === rel);
     const entry = { path: rel, hash };
     if (idx >= 0)
         entries[idx] = entry;
     else
         entries.push(entry);
-    (0, metadata_1.setDocEntries)(docsPath, args.docId, entries);
+    (0, metadata_1.setDocEntries)(docsPath, docId, entries);
+    const report = (0, metadata_1.buildReport)(entries, sourceRoot);
+    return jsonResult({
+        id: docId,
+        added: entry,
+        total: report.total,
+        accuracy: report.accuracy,
+    });
+}
+function toolRemoveMetadata(docsPath, args) {
+    const docId = decodeDocId(args?.id);
+    if (!args.path)
+        throw new Error("path is required");
+    const sourceRoot = (0, metadata_1.resolveSourceRoot)(docsPath);
+    const rel = (0, metadata_1.assertUnderSourceRoot)(args.path, sourceRoot);
+    const entries = (0, metadata_1.getDocEntries)(docsPath, docId);
+    const idx = entries.findIndex((e) => e.path === rel);
+    let removed = null;
+    if (idx >= 0) {
+        removed = entries[idx];
+        entries.splice(idx, 1);
+        (0, metadata_1.setDocEntries)(docsPath, docId, entries);
+    }
     const report = (0, metadata_1.buildReport)(entries, sourceRoot);
-    return jsonResult({ docId: args.docId, added: rel, ...report });
+    return jsonResult({
+        id: docId,
+        removed,
+        total: report.total,
+        accuracy: report.accuracy,
+    });
+}
+function toolListDocumentsBelowAccuracy(docsPath) {
+    const sourceRoot = (0, metadata_1.resolveSourceRoot)(docsPath);
+    const docs = (0, documents_1.listAllDocuments)(docsPath);
+    const candidates = [];
+    for (const doc of docs) {
+        const decodedId = decodeURIComponent(doc.id);
+        const entries = (0, metadata_1.getDocEntries)(docsPath, decodedId);
+        if (entries.length === 0)
+            continue;
+        const filePath = (0, documents_1.resolveDocFilePath)(docsPath, doc);
+        if (filePath) {
+            try {
+                const content = fs_1.default.readFileSync(filePath, "utf-8");
+                const status = (0, metadata_1.getFrontmatterField)(content, "status");
+                if (status && status.trim().toLowerCase() === "superseeded")
+                    continue;
+            }
+            catch {
+                // Unreadable doc — keep it in scope; metadata accuracy is still meaningful.
+            }
+        }
+        const report = (0, metadata_1.buildReport)(entries, sourceRoot);
+        if (report.accuracy >= ACCURACY_THRESHOLD)
+            continue;
+        candidates.push({
+            id: doc.id,
+            title: doc.title,
+            category: doc.category,
+            folder: doc.folder,
+            accuracy: report.accuracy,
+            total: report.total,
+            unchanged: report.unchanged,
+            modified: report.modified,
+            missing: report.missing,
+        });
+    }
+    candidates.sort((a, b) => a.accuracy - b.accuracy);
+    return jsonResult({
+        items: candidates.slice(0, MAX_ITEMS),
+        totalBelowThreshold: candidates.length,
+    });
 }
 //# sourceMappingURL=metadata.js.map

package/dist/src/mcp/tools/metadata.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "living-documentation",
-  "version": "7.11.0",
+  "version": "7.13.0",
   "description": "A CLI tool that serves a local Markdown documentation viewer",
   "main": "dist/src/server.js",
   "bin": {