libpetri 2.0.0 → 2.1.0

package/dist/chunk-RNWTYK5B.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/viewer/layout/preprocess.ts","../src/viewer/layout/elk-place.ts"],"sourcesContent":["/**\n * Graph pre-processing for the C0-replicate-default layout pipeline.\n *\n * Three pure-ish transforms operate on a {@link GraphModel} parsed from a\n * libpetri-exported DOT string:\n *\n *   parseLibpetriDot(dot)           → GraphModel\n *   foldOrphans(graph, threshold)   → GraphModel    (REASSIGN_ORPHANS)\n *   replicateShared(graph, opts)    → GraphModel    (REPLICATE_SHARED)\n *\n * The pipeline turns a flat cluster soup into a cluster-internal one by\n * (a) folding orphan nodes whose edges concentrate in one cluster into that\n * cluster, and (b) cloning shared places into every foreign cluster they\n * touch so cross-cluster spaghetti disappears. The resulting GraphModel is\n * what ELK lays out (Stage 2) and Graphviz then renders in pin-mode.\n *\n * Algorithm lineage: ported from\n * `/home/db/otto-repos/nucleus_marvin/.scratch/javadoc-layout-exp/CHECKPOINTS/run16_GOOD_v3_skip-junctions.mjs`\n * lines 14–220. The arc-type detection, replica naming\n * (`${placeId}__rep__${clusterShortName}`), and the `__replica` /\n * `replicaOf` markers are load-bearing — downstream stages key off them.\n *\n * @module viewer/layout/preprocess\n */\n\nexport type ArcType = 'normal' | 'reset' | 'inhibitor' | 'read';\nexport type NodeKind = 'place' | 'transition' | 'junction';\n\nexport interface ParsedNode {\n  readonly id: string;\n  readonly kind: NodeKind;\n  readonly attrs: Record<string, string>;\n  /** True iff this node was emitted by replicateShared. */\n  readonly replica?: boolean;\n  /** For a replica, the id of the original logical place. */\n  readonly replicaOf?: string;\n}\n\nexport interface ParsedEdge {\n  readonly src: string;\n  readonly dst: string;\n  readonly arc: ArcType;\n  /**\n   * Raw attribute body from the libpetri DOT (between the `[…]` brackets,\n   * brackets stripped). Carries style/penwidth/label that we want to\n   * round-trip verbatim so the rendered output matches `DotExporter`'s\n   * native look.\n   */\n  readonly rawAttrs: string;\n}\n\nexport interface ParsedCluster {\n  readonly id: string;          // \"cluster_productSearch\"\n  readonly shortName: string;   // \"productSearch\"\n  readonly nodes: readonly string[];\n}\n\nexport interface GraphModel {\n  readonly nodes: ReadonlyMap<string, ParsedNode>;\n  readonly clusters: ReadonlyMap<string, ParsedCluster>;\n  readonly nodeToCluster: ReadonlyMap<string, string>;\n  /** Node ids not in any cluster (rendered at the orchestrator root). */\n  readonly orphans: readonly string[];\n  readonly edges: readonly ParsedEdge[];\n}\n\nfunction classifyKind(id: string): NodeKind {\n  if (id.startsWith('p_')) return 'place';\n  if (id.startsWith('t_')) return 'transition';\n  return 'junction';\n}\n\n/**\n * Recover key=value attributes from inside a DOT `[...]` block.\n *\n * Mirrors v3 line 29. The regex is intentionally permissive about quoted\n * values containing escaped quotes; it does not validate DOT syntax.\n */\nfunction parseAttrs(body: string): Record<string, string> {\n  const attrs: Record<string, string> = {};\n  for (const m of body.matchAll(/(\\w+)=(\"(?:[^\"]|\\\\.)*\"|\\S+?)(?=[\\s,]|$)/g)) {\n    const [, key, raw] = m as unknown as [string, string, string];\n    const v = raw.startsWith('\"') && raw.endsWith('\"') ? raw.slice(1, -1) : raw;\n    attrs[key] = v;\n  }\n  return attrs;\n}\n\n/**\n * Parse a libpetri-exported DOT string into a {@link GraphModel}.\n *\n * Tolerates the current exporter shape (see\n * `java/src/main/java/org/libpetri/export/StyleConstants.java`):\n *  - inhibitor arcs use `arrowhead=\"odot\"` + color `#dc3545`\n *  - reset arcs use `label=\"reset\"` + color `#fd7e14`\n *  - read arcs use `label=\"read\"` + color `#6c757d`\n *\n * Mirrors v3 lines 24–103.\n */\nexport function parseLibpetriDot(dot: string): GraphModel {\n  const nodes = new Map<string, ParsedNode>();\n  // Greedy `.*` (no /s flag) consumes the full attrs body up to the line's\n  // trailing `];`. The v3 reference used `[^\\]]*` which silently dropped\n  // transitions whose label contained `[…]` text (e.g., `\"[0, ∞]ms\"`); we\n  // can't tolerate that here because the typed model wants every cluster\n  // member to have a Node entry.\n  for (const m of dot.matchAll(/^\\s*([pjt]_[A-Za-z0-9_]+)\\s*\\[(.*)\\];\\s*$/gm)) {\n    const [, id, body] = m as unknown as [string, string, string];\n    nodes.set(id, { id, kind: classifyKind(id), attrs: parseAttrs(body) });\n  }\n\n  const clusters = new Map<string, ParsedCluster>();\n  const nodeToCluster = new Map<string, string>();\n  for (const cm of dot.matchAll(/subgraph (cluster_\\w+)\\s*\\{([^]*?)^\\s*\\}/gm)) {\n    const [, clusterId, body] = cm as unknown as [string, string, string];\n    const memberIds = [...body.matchAll(/^\\s*([pjt]_[A-Za-z0-9_]+)\\s*\\[/gm)]\n      .map(m => (m as unknown as [string, string])[1]);\n    clusters.set(clusterId, {\n      id: clusterId,\n      shortName: clusterId.replace(/^cluster_/, ''),\n      nodes: memberIds,\n    });\n    for (const n of memberIds) nodeToCluster.set(n, clusterId);\n  }\n\n  // Catch nodes declared at root (orphans) — strip cluster bodies, then scan\n  const stripped = dot.replace(/subgraph cluster_\\w+\\s*\\{[^]*?^\\s*\\}/gm, '');\n  for (const m of stripped.matchAll(/^\\s*([pjt]_[A-Za-z0-9_]+)\\s*\\[/gm)) {\n    const id = (m as unknown as [string, string])[1];\n    if (!nodes.has(id)) {\n      // Root-declared node without full attrs (rare); seed with empty attrs.\n      nodes.set(id, { id, kind: classifyKind(id), attrs: {} });\n    }\n  }\n\n  const orphans = [...nodes.keys()].filter(n => !nodeToCluster.has(n));\n\n  const edges: ParsedEdge[] = [];\n  for (const m of dot.matchAll(/([pjt]_[A-Za-z0-9_]+)\\s*->\\s*([pjt]_[A-Za-z0-9_]+)\\s*(\\[[^\\]]*\\])?/g)) {\n    const [, src, dst, rawAttrs] = m as unknown as [string, string, string, string | undefined];\n    const attrs = rawAttrs ?? '';\n    // Cluster-anchor edges (lhead/ltail) are exporter-internal routing hints,\n    // not real arcs in the Petri net — skip per v3 line 97.\n    if (attrs.includes('lhead=') || attrs.includes('ltail=')) continue;\n    let arc: ArcType = 'normal';\n    if (attrs.includes('label=\"reset\"') || attrs.includes('#fd7e14')) arc = 'reset';\n    else if (attrs.includes('arrowhead=\"odot\"') || attrs.includes('#dc3545')) arc = 'inhibitor';\n    else if (attrs.includes('label=\"read\"')) arc = 'read';\n    // Strip the `[…]` brackets so writeBack can splice the body into a new\n    // attr list. Empty if libpetri emitted a bare `src -> dst;`.\n    const stripped = attrs.startsWith('[') && attrs.endsWith(']')\n      ? attrs.slice(1, -1)\n      : '';\n    edges.push({ src, dst, arc, rawAttrs: stripped });\n  }\n\n  return { nodes, clusters, nodeToCluster, orphans, edges };\n}\n\n/**\n * Adopt orphan nodes into the cluster their edges most prefer.\n *\n * For each orphan, tally how many of its edges touch each cluster. If the\n * dominant cluster gets at least `threshold` of the orphan's cluster-touching\n * edges, the orphan is reassigned to that cluster.\n *\n * Mirrors v3 lines 105–136. Default threshold 0.7 matches REASSIGN_ORPHANS.\n */\nexport function foldOrphans(graph: GraphModel, threshold = 0.7): GraphModel {\n  if (threshold <= 0) return graph;\n\n  const nodeToCluster = new Map(graph.nodeToCluster);\n  const clusterMembers = new Map<string, string[]>();\n  for (const [id, c] of graph.clusters) clusterMembers.set(id, [...c.nodes]);\n\n  const tally = new Map<string, Map<string, number>>();\n  const bump = (orphan: string, other: string): void => {\n    const oc = nodeToCluster.get(other);\n    if (!oc) return;\n    let t = tally.get(orphan);\n    if (!t) { t = new Map(); tally.set(orphan, t); }\n    t.set(oc, (t.get(oc) ?? 0) + 1);\n  };\n\n  for (const e of graph.edges) {\n    const sIsOrphan = !nodeToCluster.has(e.src);\n    const dIsOrphan = !nodeToCluster.has(e.dst);\n    if (sIsOrphan && !dIsOrphan) bump(e.src, e.dst);\n    if (dIsOrphan && !sIsOrphan) bump(e.dst, e.src);\n  }\n\n  for (const id of graph.orphans) {\n    const t = tally.get(id);\n    if (!t) continue;\n    let total = 0;\n    let bestCluster: string | null = null;\n    let bestCount = 0;\n    for (const [c, n] of t) {\n      total += n;\n      if (n > bestCount) { bestCount = n; bestCluster = c; }\n    }\n    if (bestCluster && total > 0 && bestCount / total >= threshold) {\n      clusterMembers.get(bestCluster)!.push(id);\n      nodeToCluster.set(id, bestCluster);\n    }\n  }\n\n  const clusters = new Map<string, ParsedCluster>();\n  for (const [id, c] of graph.clusters) {\n    clusters.set(id, { ...c, nodes: clusterMembers.get(id)! });\n  }\n  const orphans = [...graph.nodes.keys()].filter(n => !nodeToCluster.has(n));\n  return { ...graph, clusters, nodeToCluster, orphans };\n}\n\nexport interface ReplicateOptions {\n  /**\n   * Skip places that touch more than this many foreign clusters. Per the\n   * plan's \"no cap\" decision, default is `Infinity`. Set to a finite value\n   * to suppress replication of hub places that would otherwise produce many\n   * copies.\n   */\n  readonly max?: number;\n  /** If true, replicate transitions as well as places. Default false. */\n  readonly replicateTransitions?: boolean;\n}\n\nexport interface ReplicateStats {\n  readonly replicatedPlaces: number;\n  readonly totalCopies: number;\n}\n\n/**\n * For each place P, replicate it into every foreign cluster touched by its\n * edges, and redirect those cross-cluster edges to the local copy.\n *\n * Replica id convention is load-bearing: `${placeId}__rep__${shortClusterName}`.\n * Downstream stages (mount-time tagging, overlay highlight, click-all-copies)\n * key off this naming and the `replica: true` / `replicaOf` markers.\n *\n * If P has a home cluster (folded earlier), the original stays as the primary\n * copy and is also marked as a replica so the ⇄ glyph renders consistently.\n * If P is an orphan with all its edges redirected, the original is dropped.\n *\n * Mirrors v3 lines 138–221.\n */\nexport function replicateShared(\n  graph: GraphModel,\n  opts: ReplicateOptions = {},\n): GraphModel & { readonly replicateStats: ReplicateStats } {\n  const max = opts.max ?? Infinity;\n  const replicateTransitions = opts.replicateTransitions ?? false;\n\n  const nodes = new Map(graph.nodes);\n  const nodeToCluster = new Map(graph.nodeToCluster);\n  const clusterMembers = new Map<string, string[]>();\n  for (const [id, c] of graph.clusters) clusterMembers.set(id, [...c.nodes]);\n  const edges = graph.edges.map(e => ({ ...e }));\n\n  // 1. Compute foreign-cluster set per replicable node.\n  const foreignByNode = new Map<string, Set<string>>();\n  const noteForeign = (nodeId: string, otherId: string): void => {\n    if (!nodeId.startsWith('p_') && !(replicateTransitions && nodeId.startsWith('t_'))) return;\n    const home = nodeToCluster.get(nodeId);\n    const otherCluster = nodeToCluster.get(otherId);\n    if (!otherCluster) return;\n    if (otherCluster === home) return;\n    let s = foreignByNode.get(nodeId);\n    if (!s) { s = new Set(); foreignByNode.set(nodeId, s); }\n    s.add(otherCluster);\n  };\n  for (const e of edges) {\n    noteForeign(e.src, e.dst);\n    noteForeign(e.dst, e.src);\n  }\n\n  // 2. Emit replicas for nodes within the cap.\n  const replicaMap = new Map<string, Map<string, string>>();  // orig → cluster → replicaId\n  let replicatedPlaces = 0;\n  let totalCopies = 0;\n  for (const [placeId, foreigns] of foreignByNode) {\n    if (foreigns.size === 0) continue;\n    if (foreigns.size > max) continue;\n    const perCluster = new Map<string, string>();\n    const orig = nodes.get(placeId);\n    if (!orig) continue;\n    for (const clusterId of foreigns) {\n      const shortName = clusterId.replace(/^cluster_/, '');\n      const repId = `${placeId}__rep__${shortName}`;\n      perCluster.set(clusterId, repId);\n      clusterMembers.get(clusterId)!.push(repId);\n      nodeToCluster.set(repId, clusterId);\n      nodes.set(repId, {\n        id: repId,\n        kind: orig.kind,\n        attrs: { ...orig.attrs },\n        replica: true,\n        replicaOf: placeId,\n      });\n      totalCopies++;\n    }\n    replicaMap.set(placeId, perCluster);\n    replicatedPlaces++;\n    // Mark the original as a shared place so the ⇄ glyph renders uniformly.\n    nodes.set(placeId, { ...orig, replica: true, replicaOf: placeId });\n  }\n\n  // 3. Redirect cross-cluster edges to the local replica on each end.\n  for (const e of edges) {\n    const sMap = replicaMap.get(e.src);\n    const dMap = replicaMap.get(e.dst);\n    if (sMap) {\n      const dCl = nodeToCluster.get(e.dst);\n      if (dCl && sMap.has(dCl)) e.src = sMap.get(dCl)!;\n    }\n    if (dMap) {\n      const sCl = nodeToCluster.get(e.src);\n      if (sCl && dMap.has(sCl)) e.dst = dMap.get(sCl)!;\n    }\n  }\n\n  // 4. Drop orphan originals whose edges all got redirected away.\n  for (const [origId] of replicaMap) {\n    if (nodeToCluster.has(origId)) continue;  // folded — keep as primary\n    const stillHasEdge = edges.some(e => e.src === origId || e.dst === origId);\n    if (!stillHasEdge) nodes.delete(origId);\n  }\n\n  const clusters = new Map<string, ParsedCluster>();\n  for (const [id, c] of graph.clusters) {\n    clusters.set(id, { ...c, nodes: clusterMembers.get(id)! });\n  }\n  const orphans = [...nodes.keys()].filter(n => !nodeToCluster.has(n));\n\n  return {\n    nodes,\n    clusters,\n    nodeToCluster,\n    orphans,\n    edges,\n    replicateStats: { replicatedPlaces, totalCopies },\n  };\n}\n","/**\n * ELK placement + DOT pin-mode rewrite.\n *\n * Stage 2 of the C0 pipeline. Takes the {@link GraphModel} produced by\n * {@link parseLibpetriDot} → {@link foldOrphans} → {@link replicateShared},\n * runs ELKjs to compute absolute `(x, y)` per node and bounding boxes per\n * cluster, then emits a fresh DOT string with positions pinned via\n * `pos=\"x,y!\"` and `bb=\"…\"`. Downstream callers render the result through\n * `@viz-js/viz` with `engine: 'neato'` + `graphAttributes: { nop: '1' }` —\n * Graphviz uses the pinned positions verbatim and routes edges around the\n * pinned cluster boundaries.\n *\n * The two functions are pure: `elkLayout` takes only the graph; `writeBack`\n * takes (graph, layout). Neither touches the original DOT text — the model\n * after replication has nodes the original DOT doesn't, so patching the\n * original would be incorrect.\n *\n * @module viewer/layout/elk-place\n */\n\nimport ELK from 'elkjs/lib/elk.bundled.js';\nimport type {\n  ElkExtendedEdge,\n  ElkNode,\n} from 'elkjs/lib/elk-api.js';\nimport type { GraphModel, ParsedNode } from './preprocess.js';\n\nconst ORCHESTRATOR_CLUSTER_ID = 'cluster_orchestrator';\n\n// Visual sizing — kept proportional to the v3 reference renderer so the\n// resulting bounding box is comparable to C0-GOOD_v3.svg.\nconst PLACE_RADIUS = 22;\nconst PLACE_CHARW = 7.4;\nconst PLACE_PAD_BELOW = 16;\nconst FONT_PLACE = 13;\nconst TRANSITION_MIN_W = 180;\nconst TRANSITION_H = 40;\nconst TRANSITION_CHARW = 8.5;\nconst JUNCTION_SIZE = 28;\nconst FONT_CLUSTER = 17;\nconst ROOT_SPACING = 90;\nconst CLUSTER_SPACING = 16;\n\n/**\n * Width/height in points that ELK should reserve for a node. Mirrors\n * `nodeDims` in v3 lines 66–78 — places get extra height to leave room for\n * the xlabel underneath the circle.\n */\nfunction nodeDims(node: ParsedNode): { width: number; height: number } {\n  if (node.kind === 'place') {\n    const label = (node.attrs.xlabel ?? node.attrs.label ?? node.id).replace(/\\\\n/g, ' ');\n    const labelWidth = label.length * PLACE_CHARW;\n    const circleD = PLACE_RADIUS * 2 + 4;\n    return {\n      width: Math.max(circleD, labelWidth),\n      height: circleD + PLACE_PAD_BELOW + FONT_PLACE,\n    };\n  }\n  if (node.kind === 'junction') {\n    return { width: JUNCTION_SIZE, height: JUNCTION_SIZE };\n  }\n  const label = (node.attrs.label ?? node.id).replace(/\\\\n/g, ' ');\n  return {\n    width: Math.max(TRANSITION_MIN_W, label.length * TRANSITION_CHARW),\n    height: TRANSITION_H,\n  };\n}\n\nexport interface NodePosition {\n  readonly x: number;\n  readonly y: number;\n  readonly width: number;\n  readonly height: number;\n}\n\nexport interface ClusterBox {\n  readonly x: number;\n  readonly y: number;\n  readonly width: number;\n  readonly height: number;\n}\n\nexport interface EdgePath {\n  readonly start: { x: number; y: number };\n  readonly end: { x: number; y: number };\n  readonly bends: ReadonlyArray<{ x: number; y: number }>;\n}\n\nexport interface LayoutResult {\n  readonly nodePositions: ReadonlyMap<string, NodePosition>;\n  readonly clusterBoxes: ReadonlyMap<string, ClusterBox>;\n  /** Keyed on `${src}->${dst}` — ELK-computed edge routes for `nop=2`. */\n  readonly edgePaths: ReadonlyMap<string, EdgePath>;\n  readonly totalWidth: number;\n  readonly totalHeight: number;\n}\n\nconst CLUSTER_OPTIONS: Record<string, string> = {\n  'elk.padding': `[top=${FONT_CLUSTER + 16},left=16,bottom=16,right=16]`,\n  'elk.algorithm': 'layered',\n  'elk.direction': 'DOWN',\n  'elk.spacing.nodeNode': String(CLUSTER_SPACING),\n  'elk.layered.spacing.nodeNodeBetweenLayers': String(CLUSTER_SPACING + 6),\n  'elk.edgeRouting': 'ORTHOGONAL',\n};\n\nconst ROOT_OPTIONS: Record<string, string> = {\n  'elk.algorithm': 'org.eclipse.elk.rectpacking',\n  'elk.aspectRatio': '1.4',\n  'elk.padding': '[top=24,left=24,bottom=24,right=24]',\n  'elk.spacing.nodeNode': String(ROOT_SPACING),\n};\n\nconst ORCHESTRATOR_OPTIONS: Record<string, string> = {\n  ...CLUSTER_OPTIONS,\n  'elk.aspectRatio': '2.4',\n  'elk.spacing.nodeNode': '10',\n};\n\n/**\n * Group edges by the cluster that contains both endpoints (or 'root' if\n * the edge crosses cluster boundaries).\n *\n * Orphans count as living in `cluster_orchestrator` for routing purposes,\n * matching v3's `ownerOf` (line 223).\n */\nfunction partitionEdges(graph: GraphModel): {\n  byCluster: Map<string, ElkExtendedEdge[]>;\n  cross: ElkExtendedEdge[];\n  /** edgeId → \"src->dst\" so the layout walk can recover the original key. */\n  edgeIdToKey: Map<string, string>;\n} {\n  const byCluster = new Map<string, ElkExtendedEdge[]>();\n  const cross: ElkExtendedEdge[] = [];\n  const edgeIdToKey = new Map<string, string>();\n  const ownerOf = (id: string): string =>\n    graph.nodeToCluster.get(id) ?? ORCHESTRATOR_CLUSTER_ID;\n\n  graph.edges.forEach((e, i) => {\n    const so = ownerOf(e.src);\n    const dt = ownerOf(e.dst);\n    const id = `e${i}`;\n    edgeIdToKey.set(id, `${e.src}->${e.dst}`);\n    const elkEdge: ElkExtendedEdge = {\n      id,\n      sources: [e.src],\n      targets: [e.dst],\n    };\n    if (so === dt) {\n      let list = byCluster.get(so);\n      if (!list) { list = []; byCluster.set(so, list); }\n      list.push(elkEdge);\n    } else {\n      cross.push(elkEdge);\n    }\n  });\n  return { byCluster, cross, edgeIdToKey };\n}\n\n/**\n * Run ELK layout against the C0 graph and return absolute positions.\n *\n * Orphan nodes are wrapped in a synthetic `cluster_orchestrator` so ELK\n * lays them out as a single block alongside the real subnets, which the\n * `rectpacking` root algorithm then packs.\n */\nexport async function elkLayout(graph: GraphModel): Promise<LayoutResult> {\n  const { byCluster, cross, edgeIdToKey } = partitionEdges(graph);\n\n  const elkChildren: ElkNode[] = [];\n  for (const [clusterId, cluster] of graph.clusters) {\n    elkChildren.push({\n      id: clusterId,\n      layoutOptions: CLUSTER_OPTIONS,\n      children: cluster.nodes\n        .map(id => graph.nodes.get(id))\n        .filter((n): n is ParsedNode => n !== undefined)\n        .map(n => ({ id: n.id, ...nodeDims(n) })),\n      edges: byCluster.get(clusterId) ?? [],\n    });\n  }\n  // Synthetic orchestrator cluster holds the remaining orphans\n  elkChildren.push({\n    id: ORCHESTRATOR_CLUSTER_ID,\n    layoutOptions: ORCHESTRATOR_OPTIONS,\n    children: graph.orphans\n      .map(id => graph.nodes.get(id))\n      .filter((n): n is ParsedNode => n !== undefined)\n      .map(n => ({ id: n.id, ...nodeDims(n) })),\n    edges: byCluster.get(ORCHESTRATOR_CLUSTER_ID) ?? [],\n  });\n\n  const elk = new ELK();\n  const rootGraph: ElkNode = {\n    id: 'root',\n    layoutOptions: ROOT_OPTIONS,\n    children: elkChildren,\n    edges: cross,\n  };\n  const layout: ElkNode = await elk.layout(rootGraph);\n\n  const nodePositions = new Map<string, NodePosition>();\n  const clusterBoxes = new Map<string, ClusterBox>();\n  const edgePaths = new Map<string, EdgePath>();\n\n  const walk = (node: ElkNode, parentX: number, parentY: number): void => {\n    const ax = parentX + (node.x ?? 0);\n    const ay = parentY + (node.y ?? 0);\n    const isCluster = node.id !== 'root' && (node.children?.length ?? 0) > 0;\n    if (isCluster) {\n      clusterBoxes.set(node.id, {\n        x: ax, y: ay,\n        width: node.width ?? 0,\n        height: node.height ?? 0,\n      });\n    }\n    if (node.id !== 'root' && !isCluster) {\n      nodePositions.set(node.id, {\n        x: ax, y: ay,\n        width: node.width ?? 0,\n        height: node.height ?? 0,\n      });\n    }\n    // Edges inside this node — their section coords are in the parent's\n    // coordinate frame, so the offset to absolutize is (parentX, parentY)\n    // for root edges, or (ax, ay) for cluster-internal edges.\n    const edgeOffsetX = node.id === 'root' ? parentX : ax;\n    const edgeOffsetY = node.id === 'root' ? parentY : ay;\n    for (const edge of node.edges ?? []) {\n      const key = edge.id ? edgeIdToKey.get(edge.id) : undefined;\n      const section = edge.sections?.[0];\n      if (!key || !section) continue;\n      edgePaths.set(key, {\n        start: {\n          x: edgeOffsetX + section.startPoint.x,\n          y: edgeOffsetY + section.startPoint.y,\n        },\n        end: {\n          x: edgeOffsetX + section.endPoint.x,\n          y: edgeOffsetY + section.endPoint.y,\n        },\n        bends: (section.bendPoints ?? []).map(p => ({\n          x: edgeOffsetX + p.x,\n          y: edgeOffsetY + p.y,\n        })),\n      });\n    }\n    for (const child of node.children ?? []) walk(child, ax, ay);\n  };\n  walk(layout, 0, 0);\n\n  return {\n    nodePositions,\n    clusterBoxes,\n    edgePaths,\n    totalWidth: layout.width ?? 0,\n    totalHeight: layout.height ?? 0,\n  };\n}\n\n/**\n * Escape an attribute value for inclusion in a DOT string literal.\n *\n * Quotes are doubled (per the DOT escape convention `\\\"`).\n */\nfunction quote(value: string): string {\n  return `\"${value.replace(/\\\\/g, '\\\\\\\\').replace(/\"/g, '\\\\\"')}\"`;\n}\n\n/**\n * Render a node's attribute list — preserving the parsed attrs (including\n * libpetri's `width`/`height`, which are the *visual* shape dimensions)\n * and adding the ELK-computed `pos` so Graphviz `nop` can pin it.\n *\n * The `pos=\"x,y!\"` form (with trailing `!`) is the neato pin-mode marker.\n * Do NOT emit ELK's layout-reserved width/height to Graphviz — those are\n * the bounding boxes needed for ELK packing (which account for xlabel\n * spillover), not the visible shape sizes. libpetri's standard styles use\n * `width=0.35` for places (25pt circles); overriding with ELK's\n * ~3 inch label-padded box made Graphviz render 114pt-radius circles.\n */\nfunction nodeAttrLine(node: ParsedNode, pos: NodePosition): string {\n  const attrs: string[] = [];\n  // Center the pinned position on the node's bbox (ELK gives the top-left).\n  const cx = pos.x + pos.width / 2;\n  const cy = pos.y + pos.height / 2;\n  attrs.push(`pos=${quote(`${cx.toFixed(2)},${cy.toFixed(2)}!`)}`);\n  for (const [k, v] of Object.entries(node.attrs)) {\n    if (k === 'pos') continue;\n    attrs.push(`${k}=${quote(v)}`);\n  }\n  return `${node.id} [${attrs.join(', ')}];`;\n}\n\nfunction edgeAttrLine(src: string, dst: string, rawAttrs: string): string {\n  // Splice libpetri's original attrs verbatim so style/penwidth/label/color\n  // match `DotExporter` 1:1. We do NOT emit `pos=` for edges — under engine\n  // `nop` Graphviz routes edges itself around the pinned node positions,\n  // which gives proper boundary clipping (arrowheads land at the visual\n  // node edge) and avoids needing a custom polyline-to-spline converter.\n  // The only \"custom\" arrowhead is `arrowhead=\"odot\"` for inhibitor edges,\n  // which libpetri's exporter already writes into rawAttrs.\n  const body = rawAttrs.trim();\n  return `${src} -> ${dst}` + (body ? ` [${body}];` : ';');\n}\n\n/**\n * Emit a Graphviz DOT string with positions pinned. Render the result with\n * `@viz-js/viz` using:\n *\n * ```ts\n * viz.renderSVGElement(dot, {\n *   engine: 'nop',\n *   yInvert: true,\n * });\n * ```\n *\n * `engine: 'nop'` (a.k.a. `nop1`) honours the pinned `pos=` on every node\n * and routes edges around them. We use this rather than `nop2` because\n * `nop2` would force us to provide a spline for every edge ourselves (no\n * routing) — and Graphviz's own routing produces correctly-clipped\n * arrowheads at the visual node boundary, which our ELK polylines did not\n * (ELK uses the layout-reserved bbox, our visual circle is much smaller).\n *\n * `yInvert: true` matches ELK's Y-down convention to Graphviz's Y-up.\n */\nexport function writeBack(graph: GraphModel, layout: LayoutResult): string {\n  const lines: string[] = [];\n  lines.push('digraph LibpetriPinned {');\n  lines.push('    rankdir=TB;');\n  lines.push('    overlap=\"false\";');\n  lines.push('    compound=\"true\";');\n  lines.push('    fontname=\"Helvetica,Arial,sans-serif\";');\n  lines.push('    outputorder=\"edgesfirst\";');\n  lines.push('    node [fontname=\"Helvetica,Arial,sans-serif\", fontsize=10];');\n  lines.push('    edge [fontname=\"Helvetica,Arial,sans-serif\", fontsize=9];');\n\n  // Clusters with their pinned bounding boxes\n  for (const [clusterId, cluster] of graph.clusters) {\n    const box = layout.clusterBoxes.get(clusterId);\n    lines.push(`    subgraph ${clusterId} {`);\n    lines.push(`        label=${quote(cluster.shortName)};`);\n    lines.push(`        style=\"rounded,dashed\";`);\n    lines.push(`        bgcolor=\"#FAFAFA\";`);\n    lines.push(`        penwidth=1.5;`);\n    if (box) {\n      const x1 = box.x.toFixed(2);\n      const y1 = box.y.toFixed(2);\n      const x2 = (box.x + box.width).toFixed(2);\n      const y2 = (box.y + box.height).toFixed(2);\n      lines.push(`        bb=${quote(`${x1},${y1},${x2},${y2}`)};`);\n    }\n    for (const nodeId of cluster.nodes) {\n      const node = graph.nodes.get(nodeId);\n      const pos = layout.nodePositions.get(nodeId);\n      if (!node || !pos) continue;\n      lines.push('        ' + nodeAttrLine(node, pos));\n    }\n    lines.push('    }');\n  }\n\n  // Orphans (root-level nodes) — laid out inside the synthetic\n  // orchestrator cluster but emitted at root so they sit alongside the\n  // real subnets without their own labelled box.\n  for (const orphanId of graph.orphans) {\n    const node = graph.nodes.get(orphanId);\n    const pos = layout.nodePositions.get(orphanId);\n    if (!node || !pos) continue;\n    lines.push('    ' + nodeAttrLine(node, pos));\n  }\n\n  // Edges — emit just the source -> dest pair plus libpetri's original\n  // styling attrs. 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package/dist/debug/index.js

@@ -6,7 +6,7 @@ import {
   instancePrefixOf,
   parentOf,
   sanitize
-} from "../chunk-4L6JVKH4.js";
+} from "../chunk-B2CV5M3L.js";
 import "../chunk-FN773SSE.js";
 
 // src/debug/debug-command.ts

package/dist/doclet/index.js

@@ -3,7 +3,7 @@ import {
   dotExport,
   nodeStyle,
   sanitize
-} from "../chunk-4L6JVKH4.js";
+} from "../chunk-B2CV5M3L.js";
 import "../chunk-FN773SSE.js";
 
 // src/doclet/petri-net-plugin.ts
@@ -446,7 +446,7 @@ function escapeLabel(s) {
 
 // src/doclet/petri-net-plugin.ts
 async function getDotExport() {
-  const mod = await import("../dot-exporter-PMHOQHZ3.js");
+  const mod = await import("../dot-exporter-WJMCJEFK.js");
   return mod.dotExport;
 }
 var TAG_PETRINET = "@petrinet";

package/dist/doclet/resources/petrinet-diagrams.css

@@ -501,3 +501,259 @@ svg.has-active-filter {
   outline: 1px solid var(--lpv-active-filter-outline);
   outline-offset: -1px;
 }
+
+/* ============================================================
+ *  C0 layout — left sidebar chrome
+ *
+ *  The chip sidebar replaces the legacy `.diagram-legend` (top-right)
+ *  and `.diagram-filter-strip` (bottom). Built by
+ *  `viewer/chrome/sidebar.ts` when `mount({ chrome: true, layout: 'elk' })`.
+ *  Lives inside the viewer container so it travels into fullscreen.
+ * ============================================================ */
+:root,
+.petrinet-diagram,
+.libpetri-viewer {
+  --lpv-sidebar-bg:               #fafafa;
+  --lpv-sidebar-border:           #e2e2e2;
+  --lpv-sidebar-text:             #333333;
+  --lpv-sidebar-muted:            #6b7280;
+  --lpv-sidebar-chip-bg:          #ffffff;
+  --lpv-sidebar-chip-hover-bg:    #f4f4ff;
+  --lpv-sidebar-chip-off-opacity: 0.45;
+  --lpv-shared-glyph-color:       #6b46c1;
+  --lpv-replica-fill:             #f3f4f6;
+  --lpv-replica-stroke:           #6b46c1;
+  --lpv-highlight-stroke:         #d97706;
+  --lpv-highlight-glow:           rgba(217, 119, 6, 0.55);
+  --lpv-neighbor-stroke:          #2563eb;
+  --lpv-faded-node-opacity:       0.14;
+  --lpv-faded-edge-opacity:       0.08;
+  --lpv-faded-cluster-opacity:    0.25;
+}
+
+.libpetri-viewer .libpetri-sidebar {
+  position: absolute;
+  top: 8px;
+  left: 8px;
+  width: 220px;
+  max-height: calc(100% - 16px);
+  overflow-y: auto;
+  background: var(--lpv-sidebar-bg);
+  border: 1px solid var(--lpv-sidebar-border);
+  border-radius: 6px;
+  padding: 10px;
+  font-size: 12px;
+  font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", sans-serif;
+  color: var(--lpv-sidebar-text);
+  z-index: 9;
+  box-shadow: 0 1px 3px rgba(0, 0, 0, 0.06);
+}
+
+.libpetri-sidebar .libpetri-sidebar-title {
+  margin: 0 0 8px 0;
+  font-weight: 700;
+  font-size: 13px;
+  color: var(--lpv-sidebar-text);
+}
+
+.libpetri-sidebar .libpetri-sidebar-actions {
+  display: flex;
+  gap: 4px;
+  margin-bottom: 8px;
+}
+
+.libpetri-sidebar .libpetri-sidebar-actions button {
+  flex: 1 1 auto;
+  padding: 3px 8px;
+  font-size: 11px;
+  font-family: inherit;
+  border: 1px solid #ccc;
+  background: #fff;
+  border-radius: 4px;
+  cursor: pointer;
+  color: var(--lpv-sidebar-text);
+}
+
+.libpetri-sidebar .libpetri-sidebar-actions button:hover {
+  background: #f0f0f0;
+}
+
+.libpetri-sidebar .libpetri-sidebar-checkbox {
+  display: flex;
+  align-items: center;
+  gap: 6px;
+  margin: 6px 0;
+  font-size: 11.5px;
+  color: var(--lpv-sidebar-text);
+  cursor: pointer;
+}
+
+.libpetri-sidebar .libpetri-sidebar-hint {
+  font-size: 10.5px;
+  color: var(--lpv-sidebar-muted);
+  line-height: 1.4;
+  margin: 6px 0 10px 0;
+  border-top: 1px solid var(--lpv-sidebar-border);
+  padding-top: 8px;
+}
+
+.libpetri-sidebar .libpetri-sidebar-chips {
+  display: flex;
+  flex-direction: column;
+  gap: 4px;
+  margin: 0;
+  padding: 0;
+  list-style: none;
+}
+
+.libpetri-sidebar .libpetri-sidebar-chip {
+  display: flex;
+  align-items: center;
+  gap: 6px;
+  padding: 4px 8px;
+  border-radius: 4px;
+  cursor: pointer;
+  user-select: none;
+  border-left: 4px solid var(--lpv-shared-glyph-color);
+  background: var(--lpv-sidebar-chip-bg);
+}
+
+.libpetri-sidebar .libpetri-sidebar-chip:hover {
+  background: var(--lpv-sidebar-chip-hover-bg);
+}
+
+.libpetri-sidebar .libpetri-sidebar-chip.is-off {
+  opacity: var(--lpv-sidebar-chip-off-opacity);
+  border-left-color: #ccc;
+}
+
+.libpetri-sidebar .libpetri-sidebar-chip-dot {
+  flex: 0 0 10px;
+  width: 10px;
+  height: 10px;
+  border-radius: 50%;
+}
+
+.libpetri-sidebar .libpetri-sidebar-chip-name {
+  flex: 1 1 auto;
+  font-family: ui-monospace, "SF Mono", Menlo, monospace;
+  font-weight: 500;
+}
+
+.libpetri-sidebar .libpetri-sidebar-chip-count {
+  color: var(--lpv-sidebar-muted);
+  font-size: 10.5px;
+}
+
+/* ============================================================
+ *  Replica visuals
+ *
+ *  Replicas of shared places get a dashed light-gray ring and a small
+ *  ⇄ glyph in the upper-right corner. The glyph is injected by
+ *  `replica-tagging.ts` as a sibling `<text>` inside `<g class="node">`.
+ * ============================================================ */
+g.node.petri-replica > ellipse,
+g.node.petri-replica > circle {
+  fill: var(--lpv-replica-fill) !important;
+  stroke: var(--lpv-replica-stroke) !important;
+  stroke-width: 1.2 !important;
+  stroke-dasharray: 3 2 !important;
+}
+
+g.node.petri-replica > text.libpetri-replica-glyph {
+  fill: var(--lpv-shared-glyph-color);
+  font-weight: 700;
+  pointer-events: none;
+}
+
+/* ============================================================
+ *  Highlight + visibility states
+ *
+ *  `applyHighlight` (highlight.ts) sets `.is-highlight` on focus +
+ *  every copy, `.is-neighbor` on real-place neighbors, `.is-faded`
+ *  on the rest. `applyVisibility` (visibility.ts) sets `.is-hidden`
+ *  on clusters / nodes / edges that the current selection excludes.
+ *  Constants match v3 colors exactly.
+ * ============================================================ */
+.libpetri-viewer svg g.node,
+.libpetri-viewer svg g.edge {
+  transition: opacity 0.15s ease-out;
+}
+
+.libpetri-viewer svg g.cluster.is-hidden,
+.libpetri-viewer svg g.edge.is-hidden,
+.libpetri-viewer svg g.node.is-hidden {
+  display: none !important;
+}
+
+.libpetri-viewer svg g.node.is-faded {
+  opacity: var(--lpv-faded-node-opacity) !important;
+}
+
+.libpetri-viewer svg g.edge.is-faded {
+  opacity: var(--lpv-faded-edge-opacity) !important;
+}
+
+/* When a cluster is faded, fade only its own border + label, NOT its
+ * descendant nodes/edges — intra-cluster highlighted edges must still pop. */
+.libpetri-viewer svg g.cluster.is-faded > polygon,
+.libpetri-viewer svg g.cluster.is-faded > path,
+.libpetri-viewer svg g.cluster.is-faded > text {
+  opacity: var(--lpv-faded-cluster-opacity);
+}
+
+.libpetri-viewer svg g.node.is-highlight > ellipse,
+.libpetri-viewer svg g.node.is-highlight > circle,
+.libpetri-viewer svg g.node.is-highlight > polygon,
+.libpetri-viewer svg g.node.is-highlight > rect {
+  stroke: var(--lpv-highlight-stroke) !important;
+  stroke-width: 3 !important;
+  filter: drop-shadow(0 0 6px var(--lpv-highlight-glow));
+}
+
+.libpetri-viewer svg g.node.is-neighbor > ellipse,
+.libpetri-viewer svg g.node.is-neighbor > circle,
+.libpetri-viewer svg g.node.is-neighbor > polygon,
+.libpetri-viewer svg g.node.is-neighbor > rect {
+  stroke: var(--lpv-neighbor-stroke) !important;
+  stroke-width: 2.5 !important;
+}
+
+.libpetri-viewer svg g.edge.is-highlight {
+  opacity: 1 !important;
+}
+
+.libpetri-viewer svg g.edge.is-highlight path {
+  stroke-width: 2.4 !important;
+  opacity: 1 !important;
+  filter: drop-shadow(0 0 4px rgba(217, 119, 6, 0.35));
+}
+
+/* ============================================================
+ *  Dark theme overrides for the sidebar
+ *
+ *  Triggered by `data-lpv-theme="dark"` on any ancestor (typically
+ *  the viewer container itself). Debug-ui sets this so the sidebar
+ *  matches the surrounding dark chrome.
+ * ============================================================ */
+[data-lpv-theme="dark"] {
+  --lpv-sidebar-bg:               #1f2937;
+  --lpv-sidebar-border:           #374151;
+  --lpv-sidebar-text:             #f3f4f6;
+  --lpv-sidebar-muted:            #9ca3af;
+  --lpv-sidebar-chip-bg:          #111827;
+  --lpv-sidebar-chip-hover-bg:    #312e81;
+  --lpv-replica-fill:             #312e81;
+  --lpv-replica-stroke:           #a78bfa;
+  --lpv-shared-glyph-color:       #a78bfa;
+}
+
+[data-lpv-theme="dark"] .libpetri-sidebar .libpetri-sidebar-actions button {
+  background: #111827;
+  color: var(--lpv-sidebar-text);
+  border-color: #374151;
+}
+
+[data-lpv-theme="dark"] .libpetri-sidebar .libpetri-sidebar-actions button:hover {
+  background: #374151;
+}