lhcb-ntuple-wizard-test 1.2.1 → 1.3.0

package/dist/components/ConfigNode.js

@@ -12,7 +12,6 @@ var _ConfigValue = _interopRequireDefault(require("./ConfigValue"));
 var _ConfigList = _interopRequireDefault(require("./ConfigList"));
 var _ConfigDict = _interopRequireDefault(require("./ConfigDict"));
 var _DeleteButton = _interopRequireDefault(require("./DeleteButton"));
-var _LokiDict = _interopRequireDefault(require("./loki/LokiDict"));
 var _reactBootstrap = require("react-bootstrap");
 var _reactBootstrapIcons = require("react-bootstrap-icons");
 var _MetadataContext = _interopRequireDefault(require("../contexts/MetadataContext"));
@@ -271,9 +270,7 @@ class ParticleConfig extends _react.default.Component {
               };
               const inputBox = type.match(list_re) !== null ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_ConfigList.default, _objectSpread({
                 type: type.match(list_re)[1]
-              }, configProps)) : type.match(dict_re) !== null ? selectedTool.includes("LoKi__Hybrid__") ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_LokiDict.default, _objectSpread({
-                lokiVars: this.context.metadata.lokiVariables
-              }, configProps)) : /*#__PURE__*/(0, _jsxRuntime.jsx)(_ConfigDict.default, _objectSpread({
+              }, configProps)) : type.match(dict_re) !== null ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_ConfigDict.default, _objectSpread({
                 keyType: type.match(dict_re)[1],
                 valType: type.match(dict_re)[2]
               }, configProps)) : /*#__PURE__*/(0, _jsxRuntime.jsx)(_ConfigValue.default, _objectSpread({

package/dist/components/DecayTree.js

@@ -19,7 +19,6 @@ var _mathjax = _interopRequireDefault(require("../lib/mathjax"));
 var _config = _interopRequireDefault(require("../config.json"));
 var _DTTConfig = _interopRequireDefault(require("../lib/DTTConfig"));
 var _lodash = _interopRequireDefault(require("lodash"));
-var _semform = _interopRequireDefault(require("./semform"));
 var _jsxRuntime = require("react/jsx-runtime");
 function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
 function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
@@ -382,9 +381,6 @@ class DecayTree extends _react.default.Component {
           })
         }), /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Card.Title, {
           children: ["Current selection: ", selectedName]
-        }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Card.Title, {
-          className: "d-flex justify-content-between align-items-center flex-column",
-          children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_semform.default, {})
         }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_ConfigNode.default, {
           dtt: this.state.dtt,
           particleID: selection,

package/dist/components/LinesTable.js

@@ -188,9 +188,8 @@ class LinesTable extends _react.default.Component {
       const index = this.state.rows.findIndex(item => item.id === id); // All choices have the same value (row.id)
 
       if (choices.length > 1) {
-        if (!confirm("Choosing multiple stripping lines... This can result in duplication of candidates within a given event! Are you sure you want to continue?")) {
-          choices.pop();
-        }
+        alert("Choosing multiple stripping lines per row can result in duplication of candidates within a given event and is therefore forbidden. To choose a different stripping line, remove the current selection.");
+        choices.pop();
       }
       rows[index].lines = choices.map(choice => Object({
         stream: choice.group,
@@ -311,10 +310,6 @@ class LinesTable extends _react.default.Component {
     _defineProperty(this, "createInfoYaml", () => {
       const rows = [...this.state.rows];
       const uniquePaths = new Set([].concat(...rows.map(row => row.paths)));
-      let email = this.state.contactEmail;
-      if (this.state.emailIsKnown) {
-        email = [localStorage.getItem("email")] || [];
-      }
       const uniquePathList = [...uniquePaths].sort();
       let info = {
         defaults: {
@@ -322,7 +317,6 @@ class LinesTable extends _react.default.Component {
           wg: "OpenData",
           // TODO: get input from (LHCb) user. keep "OpenData" if open data
           automatically_configure: true,
-          inform: email,
           output: "DVNtuple.root" // Probably okay to leave this as the default
         }
       };
@@ -415,7 +409,6 @@ class LinesTable extends _react.default.Component {
               }
             });
           } else {
-            email.push(config.defaults.inform[0]);
             rows.forEach(row => {
               Object.keys(config).forEach(job => {
                 if (job !== "defaults" && job !== "name" && job !== "blob") {

package/dist/config.json

@@ -1,5 +1,5 @@
 {
-  "metadata_baseurl": "https://lbwizard-metadata.web.cern.ch/3.0.1/",
+  "metadata_baseurl": "https://lbwizard-metadata.web.cern.ch/3.1.0/",
   "metadata_files": {
     "particleProperties": "particle_properties",
     "lokiVariables": "loki",

package/dist/index.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _reactDom = _interopRequireDefault(require("react-dom"));
+var _client = require("react-dom/client");
 var _App = _interopRequireDefault(require("./components/App"));
 var _jsxRuntime = require("react/jsx-runtime");
 function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
@@ -15,4 +15,6 @@ function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e
 * or submit itself to any jurisdiction.                                       *
 \*****************************************************************************/
 
-_reactDom.default.render(/*#__PURE__*/(0, _jsxRuntime.jsx)(_App.default, {}), document.getElementById("root"));
+const container = document.getElementById("root");
+const root = (0, _client.createRoot)(container);
+root.render(/*#__PURE__*/(0, _jsxRuntime.jsx)(_App.default, {}));

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "lhcb-ntuple-wizard-test",
-  "version": "1.2.1",
+  "version": "1.3.0",
   "description": "An application to access large-scale open data from LHCb",
   "url": "https://gitlab.cern.ch/lhcb-dpa/wp6-analysis-preservation-and-open-data/lhcb-ntuple-wizard-frontend/issues",
   "private": false,
@@ -10,48 +10,25 @@
     "dist",
     "README.md"
   ],
-  "browser": {
-    "fs": false,
-    "path": false,
-    "os": false
-  },
   "dependencies": {
-    "@vitejs/plugin-react": "^4.2.1",
-    "bootstrap": "^5.1.3",
-    "email-validator": "^2.0.4",
-    "js-yaml": "^4.1.0",
-    "jszip": "^3.7.1",
-    "lodash": "^4.17.21",
-    "lodash.memoize": "^4.1.2",
-    "mathjax-react": "^2.0.1",
-    "pako": "^2.1.0",
-    "react": "^17.0.2",
-    "react-bootstrap": "^2.0.3",
-    "react-bootstrap-icons": "^1.6.1",
-    "react-dom": "^17.0.2",
-    "react-app-polyfill": "^3.0.0",
-    "react-dev-utils": "^12.0.1",
-    "react-graph-vis": "^1.0.7",
-    "react-infinite-scroll-component": "^6.1.0",
-    "react-router-dom": "^5.2.0",
-    "react-select": "^4.3.1",
-    "react-overlays": "5.2.1",
-    "@mui/material": "latest",
-    "@emotion/react": "latest",
-    "@emotion/styled": "latest",
-    "@mui/joy": "latest",
-    "@avcs/autosuggest": "latest",
-    "@webscopeio/react-textarea-autocomplete": "^4.9.2",
-    "@monaco-editor/react": "^4.6.0",
-    "monaco-editor-nls": "^3.1.0",
-    "monaco-editor": "^0.44.0",
-    "monaco-editor-core": "^0.44.0",
-    "monaco-languageclient": "0.13.1-next.9",
-    "react-monaco-editor": "^0.55.0",
-    "monaco-editor-webpack-plugin": "^7.1.0",
-    "vite": "^5.1.1",
-    "@xenova/transformers": "^2.16.1",
-    "web-vitals": "^2.1.4"
+    "@vitejs/plugin-react": "5.0.3",
+    "bootstrap": "5.3.8",
+    "email-validator": "2.0.4",
+    "js-yaml": "4.1.0",
+    "jszip": "3.10.1",
+    "lodash": "4.17.21",
+    "lodash.memoize": "4.1.2",
+    "mathjax-react": "2.0.1",
+    "pako": "2.1.0",
+    "react": "18.3.1",
+    "react-bootstrap": "2.10.10",
+    "react-bootstrap-icons": "1.11.6",
+    "react-dom": "18.3.1",
+    "react-graph-vis": "1.0.7",
+    "react-infinite-scroll-component": "6.1.0",
+    "react-router-dom": "5.3.4",
+    "react-select": "5.10.2",
+    "vite": "7.1.7"
   },
   "overrides": {
     "autoprefixer": "10.4.5"
@@ -81,9 +58,12 @@
       "last 1 safari version"
     ]
   },
+  "engines": {
+    "node": ">=22.16.0"
+  },
   "devDependencies": {
-    "@babel/cli": "^7.21.0",
-    "@babel/preset-env": "^7.21.4",
-    "@babel/preset-react": "^7.18.6"
+    "@babel/cli": "7.28.3",
+    "@babel/preset-env": "7.28.3",
+    "@babel/preset-react": "7.27.1"
   }
 }

package/dist/components/loki/LokiDict.js

@@ -1,184 +0,0 @@
-"use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-var _react = _interopRequireDefault(require("react"));
-var _LokiEditor = _interopRequireDefault(require("./LokiEditor"));
-var _Grid = _interopRequireDefault(require("@mui/material/Grid"));
-var _propTypes = _interopRequireDefault(require("prop-types"));
-var _reactBootstrap = require("react-bootstrap");
-var _reactBootstrapIcons = require("react-bootstrap-icons");
-var _LokiForm = _interopRequireDefault(require("./LokiForm"));
-var _jsxRuntime = require("react/jsx-runtime");
-function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
-function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
-function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
-function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); } /*****************************************************************************\
-* (c) Copyright 2024 CERN for the benefit of the LHCb Collaboration           *
-*                                                                             *
-* This software is distributed under the terms of the GNU General Public      *
-* Licence version 3 (GPL Version 3), copied verbatim in the file "COPYING".   *
-*                                                                             *
-* In applying this licence, CERN does not waive the privileges and immunities *
-* granted to it by virtue of its status as an Intergovernmental Organization  *
-* or submit itself to any jurisdiction.                                       *
-\*****************************************************************************/
-class LokiDict extends _react.default.Component {
-  constructor() {
-    super(...arguments);
-    _defineProperty(this, "state", {
-      lines: this.props.value,
-      error: "",
-      add: false,
-      currentKey: "",
-      currentValue: ""
-    });
-    _defineProperty(this, "handleClose", () => {
-      this.setState({
-        add: false
-      });
-    });
-    _defineProperty(this, "handleAdd", () => {
-      var lines = this.state.lines;
-      const key = this.state.currentKey;
-      const value = this.state.currentValue;
-      lines[key] = value;
-      this.setState({
-        lines: lines
-      });
-      this.setState({
-        currentKey: ""
-      });
-      this.setState({
-        currentValue: ""
-      });
-      this.props.callback(this.state.lines);
-    });
-    _defineProperty(this, "handleRemove", key => {
-      var lines = this.state.lines;
-      delete lines[key];
-      this.setState({
-        lines: lines
-      });
-      this.props.callback(this.state.lines);
-    });
-    _defineProperty(this, "setValueByKey", (key, value) => {
-      var lines = this.state.lines;
-      lines[key] = value;
-      this.setState({
-        lines: lines
-      });
-      this.props.callback(this.state.lines);
-    });
-    _defineProperty(this, "setAddLine", () => {
-      this.setState({
-        add: true
-      });
-    });
-    _defineProperty(this, "changeKey", value => {
-      this.setState({
-        currentKey: value
-      });
-    });
-    _defineProperty(this, "validKey", value => {
-      if (value in this.state.lines) {
-        return false;
-      }
-      return true;
-    });
-    _defineProperty(this, "changeValue", value => {
-      this.setState({
-        currentValue: value
-      });
-    });
-  }
-  render() {
-    return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Card, {
-      children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Card.Header, {
-        className: "d-flex justify-content-between align-items-start",
-        children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Card.Title, {
-          children: "Loki Lines"
-        }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
-          variant: "success",
-          size: "sm",
-          onClick: this.setAddLine,
-          children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrapIcons.PlusLg, {})
-        })]
-      }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ListGroup, {
-        variant: "flush",
-        children: Object.keys(this.state.lines).map(key => {
-          return /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ListGroup.Item, {
-            className: "d-flex justify-content-between align-items-start",
-            children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_Grid.default, {
-              container: true,
-              spacing: 1,
-              children: /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Grid.default, {
-                className: "d-flex",
-                item: true,
-                form: "maincomponent",
-                xs: true,
-                children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("span", {
-                  children: [key, ": "]
-                }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_LokiEditor.default, {
-                  callback: value => {
-                    this.setValueByKey(key, value);
-                  },
-                  value: this.state.lines[key],
-                  lokiVars: this.props.lokiVars,
-                  oneLine: true,
-                  height: "24px",
-                  width: "40dvw"
-                }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
-                  variant: "danger",
-                  size: "sm",
-                  onClick: () => this.handleRemove(key),
-                  children: "Remove"
-                })]
-              })
-            })
-          }, key);
-        })
-      }), this.state.add ? /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Modal, {
-        show: true,
-        onHide: this.handleClose,
-        children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Modal.Header, {
-          closeButton: true,
-          children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Modal.Title, {
-            children: "Add Dict Item"
-          })
-        }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Modal.Body, {
-          children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_LokiForm.default, {
-            value: "",
-            keyCallback: this.changeKey,
-            valueCallback: this.changeValue,
-            lokiVars: this.props.lokiVars,
-            validateKey: this.validKey
-          }, "")
-        }), /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Modal.Footer, {
-          children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
-            variant: "secondary",
-            onClick: this.handleClose,
-            children: "Close"
-          }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
-            variant: "primary",
-            onClick: () => {
-              this.handleAdd();
-              this.handleClose();
-            },
-            disabled: this.state.currentKey === "" || this.state.currentValue === "" || !this.validKey(this.state.currentKey),
-            children: "Save Changes"
-          })]
-        })]
-      }) : ""]
-    });
-  }
-}
-LokiDict.propTypes = {
-  callback: _propTypes.default.func,
-  defaulValue: _propTypes.default.string,
-  value: _propTypes.default.object,
-  lokiVars: _propTypes.default.object
-};
-var _default = exports.default = LokiDict;

package/dist/components/loki/LokiEditor.js

@@ -1,199 +0,0 @@
-"use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-var _react = _interopRequireDefault(require("react"));
-var _reactMonacoEditor = _interopRequireDefault(require("react-monaco-editor"));
-var monaco = _interopRequireWildcard(require("monaco-editor"));
-var _react2 = require("@monaco-editor/react");
-var _Spinner = _interopRequireDefault(require("react-bootstrap/Spinner"));
-var _propTypes = _interopRequireDefault(require("prop-types"));
-var _jsxRuntime = require("react/jsx-runtime");
-function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
-function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
-/*****************************************************************************\
-* (c) Copyright 2024 CERN for the benefit of the LHCb Collaboration           *
-*                                                                             *
-* This software is distributed under the terms of the GNU General Public      *
-* Licence version 3 (GPL Version 3), copied verbatim in the file "COPYING".   *
-*                                                                             *
-* In applying this licence, CERN does not waive the privileges and immunities *
-* granted to it by virtue of its status as an Intergovernmental Organization  *
-* or submit itself to any jurisdiction.                                       *
-\*****************************************************************************/
-
-// import { monaco } from 'react-monaco-editor';
-
-_react2.loader.config({
-  monaco
-});
-let LokiData = {};
-function createDependencyProposals(range) {
-  // returning a static list of proposals, not even looking at the prefix (filtering is done by the Monaco editor),
-  // here you could do a server side lookup
-  let listOfFunctors = [];
-  Object.keys(LokiData).forEach((key, _index) => {
-    listOfFunctors.push({
-      label: key,
-      kind: monaco.languages.CompletionItemKind.Function,
-      documentation: LokiData[key].description,
-      insertText: key,
-      range: range
-    });
-  });
-  return listOfFunctors;
-}
-_react2.loader.init().then(monaco => {
-  monaco.languages.registerCompletionItemProvider("python", {
-    provideCompletionItems: function (model, position) {
-      var word = model.getWordUntilPosition(position);
-      var range = {
-        startLineNumber: position.lineNumber,
-        endLineNumber: position.lineNumber,
-        startColumn: word.startColumn,
-        endColumn: word.endColumn
-      };
-      return {
-        suggestions: createDependencyProposals(range)
-      };
-    }
-  });
-  monaco.languages.registerHoverProvider("python", {
-    provideHover: function (model, position) {
-      let hoverObjects = [];
-      let matches = Object.keys(LokiData).filter(name => {
-        return model.findMatches(name, false, false, true, " (:,)*").length !== 0;
-      });
-      if (matches.length > 0) {
-        matches.forEach(match => model.findMatches(match, false, false, true).forEach(range => hoverObjects.push({
-          match: match,
-          position: position,
-          range: range,
-          contents: [{
-            supportHtml: true,
-            value: LokiData[match].documentation
-          }]
-        })));
-        for (const element of hoverObjects) {
-          if (contains(element.range, position)) {
-            // alert(element.contents[0].value)
-            return element;
-          }
-        }
-      }
-      return {
-        range: new monaco.Range(1, 1, model.getLineCount(), model.getLineMaxColumn(model.getLineCount())),
-        contents: [{
-          supportHtml: true,
-          value: '<span style="color red;">No matches</span>',
-          isTrusted: true
-        }]
-      };
-    }
-  });
-});
-function contains(range, position) {
-  if (range.range.startLineNumber <= position.lineNumber && range.range.endLineNumber >= position.lineNumber) {
-    if (range.range.startColumn <= position.column && range.range.endColumn >= position.column) {
-      return true;
-    }
-  }
-  return false;
-}
-class LokiEditor extends _react.default.Component {
-  constructor(props) {
-    super(props);
-    this.state = {
-      code: this.props.returnList ? this.props.value.join("\n") : this.props.value,
-      loaded: true
-    };
-  }
-  editorDidMount(editor, _monaco) {
-    editor.focus();
-  }
-  onChange(newValue, _e) {
-    if (this.props.oneLine) {
-      newValue = newValue.replace(/[\n\r]/g, "");
-    }
-    this.setState({
-      code: newValue
-    });
-    if (this.props.returnList) {
-      newValue = newValue.split(/\r?\n/);
-    }
-    this.props.callback(newValue);
-  }
-  render() {
-    const code = this.state.code;
-    const lokiVars = this.props.lokiVars.lokiVariables;
-    Object.keys(lokiVars).forEach(key => {
-      LokiData[key] = lokiVars[key];
-    });
-    const options = {
-      autoIndent: "full",
-      contextmenu: false,
-      fontFamily: "monospace",
-      fontSize: 18,
-      lineHeight: 24,
-      hideCursorInOverviewRuler: true,
-      matchBrackets: "always",
-      lineNumbers: "off",
-      lineDecorationsWidth: 0,
-      lineNumbersMinChars: 0,
-      glyphMargin: false,
-      wordWrap: "on",
-      minimap: {
-        enabled: false
-      },
-      scrollbar: {
-        horizontal: "hidden",
-        vertical: "hidden",
-        horizontalSliderSize: 0,
-        verticalSliderSize: 0,
-        horizontalScrollbarSize: 0,
-        verticalScrollbarSize: 0
-      },
-      scrollBeyondLastLine: false,
-      selectOnLineNumbers: true,
-      roundedSelection: false,
-      readOnly: false,
-      cursorStyle: "line",
-      automaticLayout: true,
-      fixedOverflowWidgets: true,
-      links: true
-    };
-    return this.state.loaded ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactMonacoEditor.default, {
-      width: this.props.width,
-      height: this.props.height,
-      language: "python",
-      theme: "vs-light",
-      value: code,
-      options: options,
-      onChange: this.onChange.bind(this),
-      editorDidMount: this.editorDidMount.bind(this)
-    }) : /*#__PURE__*/(0, _jsxRuntime.jsx)(_Spinner.default, {
-      animation: "border",
-      role: "status"
-    });
-  }
-}
-LokiEditor.defaultProps = {
-  value: "",
-  oneLine: false,
-  width: "30vh",
-  height: "10vh",
-  returnList: false
-};
-LokiEditor.propTypes = {
-  callback: _propTypes.default.func,
-  value: _propTypes.default.string,
-  defaultValue: _propTypes.default.string,
-  lokiVars: _propTypes.default.object,
-  oneLine: _propTypes.default.bool,
-  height: _propTypes.default.string,
-  width: _propTypes.default.string,
-  returnList: _propTypes.default.bool
-};
-var _default = exports.default = LokiEditor;

package/dist/components/loki/LokiForm.js

@@ -1,116 +0,0 @@
-"use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-var _react = _interopRequireDefault(require("react"));
-var _LokiEditor = _interopRequireDefault(require("./LokiEditor"));
-var _propTypes = _interopRequireDefault(require("prop-types"));
-var _reactBootstrap = require("react-bootstrap");
-var _Grid = _interopRequireDefault(require("@mui/material/Grid"));
-var _jsxRuntime = require("react/jsx-runtime");
-function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
-function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
-function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
-function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); } /*****************************************************************************\
-* (c) Copyright 2024 CERN for the benefit of the LHCb Collaboration           *
-*                                                                             *
-* This software is distributed under the terms of the GNU General Public      *
-* Licence version 3 (GPL Version 3), copied verbatim in the file "COPYING".   *
-*                                                                             *
-* In applying this licence, CERN does not waive the privileges and immunities *
-* granted to it by virtue of its status as an Intergovernmental Organization  *
-* or submit itself to any jurisdiction.                                       *
-\*****************************************************************************/
-class LokiForm extends _react.default.Component {
-  constructor() {
-    super(...arguments);
-    _defineProperty(this, "state", {
-      key: this.props.key,
-      value: this.props.value,
-      err: false,
-      errMsg: ""
-    });
-    _defineProperty(this, "keyCallback", event => {
-      const key = event.target.value.replaceAll(/[^\w]/g, "");
-      if (!this.props.validateKey(key)) {
-        this.setState({
-          err: true,
-          errMsg: "Key must be unique and not empty!"
-        });
-      } else {
-        this.setState({
-          err: false,
-          errMsg: ""
-        });
-      }
-      this.setState({
-        key: key
-      });
-      this.props.keyCallback(key);
-    });
-    _defineProperty(this, "valueCallback", value => {
-      this.setState({
-        value: value
-      });
-      this.props.valueCallback(value);
-    });
-  }
-  render() {
-    const errorMessage = this.state.err ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Alert, {
-      variant: "danger",
-      children: this.state.errMsg
-    }) : /*#__PURE__*/(0, _jsxRuntime.jsx)(_jsxRuntime.Fragment, {});
-    const margin = {
-      "margin-left": "7px"
-    };
-    return /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.InputGroup, {
-      children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_Grid.default, {
-        container: true,
-        spacing: 1,
-        children: /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Grid.default, {
-          className: "d-flex",
-          item: true,
-          form: "maincomponent",
-          xs: true,
-          children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
-            children: [errorMessage, /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.FormControl, {
-              placeholder: "Varibale Name",
-              onChange: this.keyCallback,
-              value: this.state.key
-            })]
-          }), /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
-            style: margin,
-            children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_LokiEditor.default, {
-              callback: this.valueCallback,
-              value: this.state.value,
-              lokiVars: this.props.lokiVars,
-              oneLine: true,
-              height: "24px",
-              width: "10dvw"
-            })
-          })]
-        })
-      })
-    });
-  }
-}
-LokiForm.defaultProps = {
-  key: "",
-  value: "",
-  validateKey: () => {
-    true;
-  },
-  lokiActive: true
-};
-LokiForm.propTypes = {
-  key: _propTypes.default.string,
-  value: _propTypes.default.string,
-  keyCallback: _propTypes.default.func,
-  valueCallback: _propTypes.default.func,
-  validateKey: _propTypes.default.func,
-  lokiVars: _propTypes.default.object,
-  lokiActive: _propTypes.default.bool
-};
-var _default = exports.default = LokiForm;

package/dist/components/semantic.js

@@ -1,97 +0,0 @@
-"use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.embedCorpus = embedCorpus;
-exports.getSimilarity = getSimilarity;
-exports.loadModel = loadModel;
-var _transformers = require("@xenova/transformers");
-/*****************************************************************************\
-* (c) Copyright 2024 CERN for the benefit of the LHCb Collaboration           *
-*                                                                             *
-* This software is distributed under the terms of the GNU General Public      *
-* Licence version 3 (GPL Version 3), copied verbatim in the file "COPYING".   *
-*                                                                             *
-* In applying this licence, CERN does not waive the privileges and immunities *
-* granted to it by virtue of its status as an Intergovernmental Organization  *
-* or submit itself to any jurisdiction.                                       *
-\*****************************************************************************/
-
-// To always download the model from huggingface.com
-_transformers.env.allowLocalModels = false;
-_transformers.env.useBrowserCache = false;
-// Create a new worker
-const worker = new Worker(new URL("./worker", import.meta.url), {
-  type: "module"
-});
-/**
- * @type {function}
- * Promise resolve function for loading the model
- */
-let loadResolve;
-/**
- * @type {function}
- */
-let queryResolve;
-worker.onmessage = function (event) {
-  const message = event.data;
-  switch (message.type) {
-    case "progress":
-      if (message.progress.status === "ready") {
-        loadResolve();
-      }
-      break;
-    case "corpus":
-      // the corpus is embedded
-      queryResolve();
-      break;
-    case "result":
-      queryResolve(message.result);
-      break;
-  }
-};
-/**
- *
- * @param {string} modelname
- * Load the model with the provided model name
- * @returns
- */
-async function loadModel(modelname) {
-  worker.postMessage({
-    type: "init",
-    model: modelname
-  });
-  return new Promise(resolve => {
-    loadResolve = resolve;
-  });
-}
-/**
- * Passes corpus embedding from backend to the worker
- * @returns
- */
-async function embedCorpus(metadata) {
-  worker.postMessage({
-    type: "corpus",
-    kgdoc: metadata.metadata.kgdoc,
-    emb: metadata.metadata.embedding
-  });
-  return new Promise(resolve => {
-    queryResolve = resolve;
-  });
-}
-/**
- *
- * @param {string} query#
- * Calculate the similarity between the query and the corpus
- * @returns
- */
-async function getSimilarity(query) {
-  worker.postMessage({
-    type: "similarity",
-    query: query
-  });
-  return new Promise(resolve => {
-    queryResolve = resolve;
-  });
-}

package/dist/components/semform.js

@@ -1,184 +0,0 @@
-"use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-var _Form = _interopRequireDefault(require("react-bootstrap/Form"));
-var _Button = _interopRequireDefault(require("react-bootstrap/Button"));
-var _semantic = require("./semantic");
-var _react = require("react");
-var _MetadataContext = _interopRequireDefault(require("../contexts/MetadataContext"));
-var _propTypes = _interopRequireDefault(require("prop-types"));
-var _DeleteButton = _interopRequireDefault(require("./DeleteButton"));
-var _jsxRuntime = require("react/jsx-runtime");
-function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
-function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
-function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
-function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
-function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
-function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); } /*****************************************************************************\
-* (c) Copyright 2024 CERN for the benefit of the LHCb Collaboration           *
-*                                                                             *
-* This software is distributed under the terms of the GNU General Public      *
-* Licence version 3 (GPL Version 3), copied verbatim in the file "COPYING".   *
-*                                                                             *
-* In applying this licence, CERN does not waive the privileges and immunities *
-* granted to it by virtue of its status as an Intergovernmental Organization  *
-* or submit itself to any jurisdiction.                                       *
-\*****************************************************************************/
-function getmetafromcontext() {
-  const context = (0, _react.useContext)(_MetadataContext.default);
-  return context;
-}
-
-/**
- * Make the output of the search more readable
- * @param {Array} data
- * @returns
- */
-function FormatOutput(_ref) {
-  let {
-    data
-  } = _ref;
-  let topchoice_ttool = [data.ttool[0]];
-  let data_ttool = data.ttool.slice(1);
-  let topchoice_loki = [data.loki[0]];
-  let data_loki = data.loki.slice(1);
-  return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_jsxRuntime.Fragment, {
-    children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
-      children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("h2", {
-        children: "Best match (TupleTools):"
-      }), /*#__PURE__*/(0, _jsxRuntime.jsx)("ul", {
-        children: topchoice_ttool.map((item, index) => /*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-          children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-            children: "Matched TupleTool:"
-          }), " ", item[2] === "LoKi_functors" ? "LoKi__Hybrid__TupleTool" : item[2], /*#__PURE__*/(0, _jsxRuntime.jsxs)("ul", {
-            children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-              children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-                children: "Variable name:"
-              }), " ", item[1]]
-            }), /*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-              children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-                children: "Definition:"
-              }), " ", item[0]]
-            })]
-          })]
-        }, index))
-      }), /*#__PURE__*/(0, _jsxRuntime.jsx)("h3", {
-        children: "Other matches (TupleTools):"
-      }), /*#__PURE__*/(0, _jsxRuntime.jsx)("ul", {
-        children: data_ttool.map((item, index) => /*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-          children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-            children: "Matched TupleTool:"
-          }), " ", item[2] === "LoKi_functors" ? "LoKi__Hybrid__TupleTool" : item[2], /*#__PURE__*/(0, _jsxRuntime.jsxs)("ul", {
-            children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-              children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-                children: "Variable name:"
-              }), " ", item[1]]
-            }), /*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-              children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-                children: "Definition:"
-              }), " ", item[0]]
-            })]
-          })]
-        }, index))
-      })]
-    }), /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
-      children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("h2", {
-        children: "Best match (LoKi functors):"
-      }), /*#__PURE__*/(0, _jsxRuntime.jsx)("ul", {
-        children: topchoice_loki.map((item, index) => /*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-          children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-            children: "Matched TupleTool:"
-          }), " ", item[2] === "LoKi_functors" ? "LoKi__Hybrid__TupleTool" : item[2], /*#__PURE__*/(0, _jsxRuntime.jsxs)("ul", {
-            children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-              children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-                children: "Variable name:"
-              }), " ", item[1]]
-            }), /*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-              children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-                children: "Definition:"
-              }), " ", item[0]]
-            })]
-          })]
-        }, index))
-      }), /*#__PURE__*/(0, _jsxRuntime.jsx)("h3", {
-        children: "Other matches (LoKi functors):"
-      }), /*#__PURE__*/(0, _jsxRuntime.jsx)("ul", {
-        children: data_loki.map((item, index) => /*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-          children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-            children: "Matched TupleTool:"
-          }), " ", item[2] === "LoKi_functors" ? "LoKi__Hybrid__TupleTool" : item[2], /*#__PURE__*/(0, _jsxRuntime.jsxs)("ul", {
-            children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-              children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-                children: "Variable name:"
-              }), " ", item[1]]
-            }), /*#__PURE__*/(0, _jsxRuntime.jsxs)("li", {
-              children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
-                children: "Definition:"
-              }), " ", item[0]]
-            })]
-          })]
-        }, index))
-      })]
-    })]
-  });
-}
-FormatOutput.propTypes = {
-  data: _propTypes.default.objectOf(_propTypes.default.array).isRequired
-};
-const SearchTTool = () => {
-  const [inputData, setInputData] = (0, _react.useState)({
-    query: ""
-  });
-  const [responseData, setResponseData] = (0, _react.useState)(null);
-  let metadata = getmetafromcontext();
-  // Load the model and embed the corpus when the component mounts
-  (0, _react.useMemo)(async () => {
-    await (0, _semantic.loadModel)("TaylorAI/gte-tiny");
-    await (0, _semantic.embedCorpus)(metadata);
-  }, []);
-  const handleChange = event => {
-    setInputData(_objectSpread(_objectSpread({}, inputData), {}, {
-      query: event.target.value
-    }));
-  };
-  const handleSubmit = async event => {
-    event.preventDefault();
-    // clean input field
-    setInputData({
-      query: ""
-    });
-    let response = await (0, _semantic.getSimilarity)(inputData.query);
-    setResponseData(response);
-  };
-  const handleDelete = () => {
-    setResponseData(null);
-  };
-  return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Form.default, {
-    onSubmit: handleSubmit,
-    children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)(_Form.default.Group, {
-      controlId: "formQuery",
-      children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_Form.default.Label, {
-        children: "Search for TupleTools"
-      }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Form.default.Control, {
-        type: "text",
-        value: inputData.query,
-        onChange: handleChange
-      })]
-    }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Button.default, {
-      variant: "primary",
-      type: "submit",
-      children: "Submit"
-    }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_DeleteButton.default, {
-      disabled: !responseData,
-      action: handleDelete
-    }), responseData && /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
-      children: /*#__PURE__*/(0, _jsxRuntime.jsx)(FormatOutput, {
-        data: responseData
-      })
-    })]
-  });
-};
-var _default = exports.default = SearchTTool;

package/dist/components/worker.js

@@ -1,196 +0,0 @@
-"use strict";
-
-var _transformers = require("@xenova/transformers");
-/*****************************************************************************\
-* (c) Copyright 2024 CERN for the benefit of the LHCb Collaboration           *
-*                                                                             *
-* This software is distributed under the terms of the GNU General Public      *
-* Licence version 3 (GPL Version 3), copied verbatim in the file "COPYING".   *
-*                                                                             *
-* In applying this licence, CERN does not waive the privileges and immunities *
-* granted to it by virtue of its status as an Intergovernmental Organization  *
-* or submit itself to any jurisdiction.                                       *
-\*****************************************************************************/
-
-// This is so that we will download the models from huggingface.co
-_transformers.env.allowLocalModels = false;
-_transformers.env.useBrowserCache = false;
-// store the embeddings in a dict
-let query_embedding;
-/**
- * @type {Object.<string, Array>}
- */
-let embedding_dict = {};
-/**
- * @type {pipeline}
- */
-let embedder;
-
-// these will hold the information to tie variable explanations to TupleTools
-let dataKeys;
-let paths;
-/**
- * @type {Array}
- * */
-let vars;
-/**
- * This function calculates the embedding and stores it in a dict.
- * If the text is already embedded, it will return the embedding from the dict.
- * @param {string} text
- * @param {bool} embedNew
- * @returns embeddingVector
- */
-async function embed(text) {
-  let embedNew = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : true;
-  if (text in embedding_dict) {
-    return embedding_dict[text];
-  }
-  const e0 = await embedder(text, {
-    pooling: "mean",
-    normalize: true
-  });
-  if (embedNew) {
-    embedding_dict[text] = e0.data;
-  }
-  return e0.data;
-}
-/**
- * This function calculates the cosine similarity between two embeddings.
- * @param {Array} corpus_embedding
- * @param {Array} query_embedding
- * @returns cosine similarity
- * */
-function calcCosSim(corpus_embedding, query_embedding) {
-  let dotProduct = 0;
-  let queryMag = 0;
-  let embMag = 0;
-  let loop_length = query_embedding.length;
-  // because the embeddings might have different dimensions
-  if (query_embedding.length > corpus_embedding.length) {
-    loop_length = corpus_embedding.length;
-  }
-  for (let i = 0; i < loop_length; i++) {
-    dotProduct += query_embedding[i] * corpus_embedding[i];
-    queryMag += query_embedding[i] * query_embedding[i];
-    embMag += corpus_embedding[i] * corpus_embedding[i];
-  }
-  const sim = dotProduct / (Math.sqrt(queryMag) * Math.sqrt(embMag));
-  return sim;
-}
-/**This is a helper function to read the nested json file containing the documentation.
- * @returns [vars, paths, dataKeys]
- */
-
-function readJsonFile(data) {
-  // go through nested object
-  vars = [];
-  paths = [];
-  const iterateObject = function (obj) {
-    let path = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : "";
-    Object.keys(obj).forEach(key => {
-      const currentPath = path ? "".concat(path, ".").concat(key) : key;
-      if (obj[key] instanceof Object) {
-        iterateObject(obj[key], currentPath);
-      } else {
-        vars.push(obj[key]);
-        paths.push(currentPath);
-      }
-    });
-  };
-
-  // go through data and put it into an array
-  const dataArray = Object.values(data);
-  dataKeys = Object.keys(data);
-  iterateObject(dataArray);
-  return [vars, paths, dataKeys];
-}
-
-// worker on message definition
-self.onmessage = async event => {
-  const message = event.data;
-  switch (message.type) {
-    case "init":
-      // load the model and reset the embedding dict
-      embedding_dict = {};
-      embedder = await (0, _transformers.pipeline)("feature-extraction", message.model, {
-        progress_callback: progress => {
-          self.postMessage({
-            type: "progress",
-            progress: progress
-          });
-        }
-      });
-      break;
-    case "corpus":
-      {
-        // embed the corpus or load the embeddings
-        readJsonFile(message.kgdoc); // this is so we can later match variables to tupletools
-
-        Object.keys(message.emb).forEach(key => {
-          let embarr = [];
-          for (const fl of message.emb[key].split(",")) {
-            embarr.push(fl.replace("[", "").replace("]", "").replace("np.float32", "").replace("(", "").replace(")", "").replace(" ", ""));
-          }
-          embedding_dict[key] = embarr;
-        });
-        self.postMessage({
-          type: "corpus"
-        });
-        break;
-      }
-    case "similarity":
-      {
-        //calculate query embedding and then calculate similarity
-        query_embedding = await embed(message.query, false);
-        let sim_dict = {};
-        Object.keys(embedding_dict).forEach(key => {
-          sim_dict[key] = calcCosSim(embedding_dict[key], query_embedding);
-        });
-        // sort by highest similarity (closest to 1)
-        const sortedSimDict = Object.fromEntries(Object.entries(sim_dict).sort((_ref, _ref2) => {
-          let [, a] = _ref;
-          let [, b] = _ref2;
-          return b - a;
-        }));
-        const top5 = Object.fromEntries(Object.entries(sortedSimDict).slice(0, 20));
-        let loki_result = [];
-        let ttool_result = [];
-        let result = {
-          loki: loki_result,
-          ttool: ttool_result
-        };
-        Object.keys(top5).forEach(key => {
-          if (key === "basic,charged: : ") {
-            return;
-          } // This is a workaround until we implement a fix in Analysis (and corresponding DaVinci release)
-          let description = key.substring(key.indexOf(":") + 2);
-          let variable = key.substring(0, key.indexOf(":") - 1);
-          let varpath = paths[vars.indexOf(description)];
-          let tupletool = dataKeys[varpath.split(".")[0]];
-          if (tupletool === "LoKi_functors") {
-            if (top5[key] > 0.86) {
-              if (loki_result.length < 5) {
-                loki_result.push([description, variable, tupletool]);
-              }
-            }
-          } else {
-            if (top5[key] > 0.75) {
-              if (ttool_result.length < 5) {
-                ttool_result.push([description, variable, tupletool]);
-              }
-            }
-          }
-        });
-        if (loki_result.length === 0) {
-          loki_result.push(["No matches found", "No matches found", "No matches found"]);
-        }
-        if (ttool_result.length === 0) {
-          ttool_result.push(["No matches found", "No matches found", "No matches found"]);
-        }
-        self.postMessage({
-          type: "result",
-          result: result
-        });
-      }
-  }
-};