lettactl 0.9.15 → 0.9.17

package/README.md

@@ -3,6 +3,7 @@
 [![CI](https://github.com/nouamanecodes/lettactl/actions/workflows/ci.yml/badge.svg)](https://github.com/nouamanecodes/lettactl/actions)
 [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
 [![TypeScript](https://img.shields.io/badge/TypeScript-007ACC?style=flat&logo=typescript&logoColor=white)](https://www.typescriptlang.org/)
+[![Socket Badge](https://socket.dev/api/badge/npm/package/lettactl)](https://socket.dev/npm/package/lettactl)
 
 ![LettaCTL](assets/main.png)
 
@@ -95,7 +96,7 @@ agents:
       - name: documents
         files:
           - "files/*"  # Auto-discover all files in files/
-    embedding: "letta/letta-free"
+    embedding: "openai/text-embedding-3-small"
 
   # 2. Cloud-powered agent using Supabase storage  
   - name: cloud-assistant
@@ -118,7 +119,7 @@ agents:
           provider: supabase
           bucket: test-bucket
           path: knowledge/example.md
-    embedding: "letta/letta-free"
+    embedding: "openai/text-embedding-3-small"
 ```
 
 Deploy the entire fleet:
@@ -139,6 +140,8 @@ lettactl apply -f agents.yml --dry-run # See what would change
 lettactl apply -f agents.yml --root . # Specify root directory for file resolution
 lettactl apply -f agents.yml -v       # Verbose output
 lettactl apply -f agents.yml -q       # Quiet mode (for CI pipelines)
+lettactl apply -f agents.yml --manifest  # Generate manifest with all resource IDs
+lettactl apply -f agents.yml --manifest output.json  # Custom manifest path
 
 # Template mode: apply config to existing agents matching a glob pattern
 lettactl apply -f template.yaml --match "*-assistant"  # All agents ending in -assistant
@@ -149,6 +152,13 @@ lettactl apply -f template.yaml --match "*" --dry-run  # Preview changes to all
 **Template Mode (`--match`):**
 Apply a template configuration to multiple existing agents at once. Uses merge semantics - adds/updates tools, blocks, and prompts without removing existing resources. Perfect for propagating tool updates or shared config changes across agent fleets.
 
+**Agent Manifests (`--manifest`):**
+Generate a JSON manifest with all resolved resource IDs after deployment. Useful for CI/CD pipelines that need to track what was deployed:
+```bash
+lettactl apply -f agents.yml --manifest
+# Generates agents.manifest.json with agent IDs, tool IDs, block IDs, etc.
+```
+
 ### Create Agents
 ```bash
 # Create basic agent
@@ -160,7 +170,7 @@ lettactl create agent advanced-agent \
   --model "google_ai/gemini-2.5-pro" \
   --system "You are an expert assistant." \
   --context-window 32000 \
-  --embedding "letta/letta-free" \
+  --embedding "openai/text-embedding-3-small" \
   --tags "production,assistant"
 ```
 
@@ -246,6 +256,7 @@ lettactl delete-all agents --pattern "PROD.*" --force   # Matches "prod-agent-1"
 
 **What gets deleted:**
 - Agent-specific memory blocks
+- Agent archival memory archives
 - Agent-specific folders (if not shared)
 - Associated conversation history
 
@@ -264,17 +275,20 @@ lettactl delete-all agents --pattern "PROD.*" --force   # Matches "prod-agent-1"
 # Preview orphaned resources (dry-run by default)
 lettactl cleanup blocks                # Find orphaned blocks
 lettactl cleanup folders               # Find orphaned folders (and their files)
+lettactl cleanup archives              # Find orphaned archives
 lettactl cleanup all                   # Find all orphaned resources
 
 # Actually delete orphaned resources
 lettactl cleanup blocks --force        # Delete orphaned blocks
 lettactl cleanup folders --force       # Delete orphaned folders (cascades to files)
+lettactl cleanup archives --force      # Delete orphaned archives (and their passages)
 lettactl cleanup all --force           # Delete all orphaned resources
 ```
 
 **What gets cleaned up:**
 - **Orphaned blocks**: Memory blocks attached to 0 agents
 - **Orphaned folders**: Folders attached to 0 agents (files inside are also deleted)
+- **Orphaned archives**: Archives attached to 0 agents
 
 **Safety Features:**
 - Dry-run by default - shows what would be deleted
@@ -282,11 +296,33 @@ lettactl cleanup all --force           # Delete all orphaned resources
 - Shows file counts for orphaned folders
 - Uses API's native orphan detection for efficiency
 
+### Archival Memory (Archives)
+Archives are the archival memory stores attached to agents.
+
+**Key points:**
+- Archives are **per-agent** and **one per agent** (validated).
+- `apply` will create and attach the archive if it does not exist.
+- Removing an archive from config only detaches it when `--force` is used.
+- Passages are managed by the agent/tools (`archival_memory_insert/search`), not by lettactl.
+- Export/import includes archives and passages via Letta server export/import.
+
+**Example:**
+```yaml
+agents:
+  - name: my-agent
+    archives:
+      - name: my-archive
+        description: "Long-term knowledge base"
+        embedding: "openai/text-embedding-3-small"
+        # embedding_config: {}   # Optional provider-specific config
+```
+
 ### View Resources
 ```bash
 # List resources
 lettactl get agents                    # List all agents
 lettactl get blocks                    # List all memory blocks
+lettactl get archives                  # List all archives (archival memory stores)
 lettactl get tools                     # List all tools
 lettactl get folders                   # List all folders (with file counts)
 lettactl get files                     # List all files (deduplicated by name)
@@ -303,6 +339,7 @@ lettactl get files -o wide             # Shows every file instance per folder
 
 # Scoped to specific agent
 lettactl get blocks -a my-agent        # Blocks attached to my-agent
+lettactl get archives -a my-agent      # Archives attached to my-agent
 lettactl get tools -a my-agent         # Tools attached to my-agent
 lettactl get folders -a my-agent       # Folders attached to my-agent
 lettactl get files -a my-agent         # Files accessible to my-agent
@@ -310,6 +347,7 @@ lettactl get files -a my-agent         # Files accessible to my-agent
 # Fleet analysis
 lettactl get tools --shared            # Tools used by 2+ agents
 lettactl get blocks --orphaned         # Blocks not attached to any agent
+lettactl get archives --orphaned       # Archives not attached to any agent
 lettactl get folders --shared          # Shared folders with agent counts
 lettactl get files --shared            # Files in folders used by 2+ agents
 lettactl get files --orphaned          # Files in folders not used by any agent
@@ -317,6 +355,7 @@ lettactl get files --orphaned          # Files in folders not used by any agent
 # Detailed resource info
 lettactl describe agent my-agent       # Agent details + blocks/tools/folders/messages/archival
 lettactl describe block persona        # Block details + attached agents + value preview
+lettactl describe archive kb-store     # Archive details + attached agents
 lettactl describe tool my-tool         # Tool details + attached agents + source code
 lettactl describe folder docs          # Folder details + files + attached agents
 lettactl describe file report.pdf      # File details + which folders contain it
@@ -373,6 +412,29 @@ lettactl delete mcp-servers my-server --force
 
 MCP servers are created/updated automatically during `lettactl apply` when defined in your configuration.
 
+**Using MCP Tools in Agents:**
+
+Once MCP servers are defined, reference their tools in agent configs using `mcp_tools`:
+
+```yaml
+mcp_servers:
+  - name: filesystem
+    type: stdio
+    command: npx
+    args: ["-y", "@anthropic/mcp-filesystem"]
+
+agents:
+  - name: file-agent
+    mcp_tools:
+      - server: filesystem
+        tools: all              # Include all tools from the server
+      # Or pick specific tools:
+      # - server: filesystem
+      #   tools: [read_file, write_file]
+```
+
+The tools are expanded and attached to the agent during apply.
+
 ---
 
 # SDK Usage
@@ -438,7 +500,7 @@ agents:
       value: "You are an assistant for user ${userId}."
     shared_blocks:  # Use shared memory blocks
       - shared-guidelines
-    embedding: "letta/letta-free"
+    embedding: "openai/text-embedding-3-small"
 `;
 
 // Deploy directly from YAML string (no file I/O needed)
@@ -571,6 +633,27 @@ await lettactl.deleteAgent('orphaned-agent');
 - Deletes the agent from the Letta server
 - Updates `.lettactl/fleet.yaml` (removes the agent entry, or deletes the file if no agents remain)
 
+### Messaging
+
+Send messages to agents programmatically:
+
+```typescript
+// Send a message (async - returns immediately with run ID)
+const run = await lettactl.sendMessage(agentId, 'Hello, how are you?');
+console.log(run.id); // run-abc123...
+
+// Wait for completion (polls with robust stop_reason detection)
+const completed = await lettactl.waitForRun(run.id);
+console.log(completed.status); // 'completed'
+
+// With timeout (in seconds)
+const completed = await lettactl.waitForRun(run.id, { timeout: 120 });
+```
+
+`sendMessage()` uses async messaging - it returns a `Run` object immediately with a job ID you can use to track progress. This prevents timeouts in applications with request limits.
+
+`waitForRun()` polls until the run reaches a terminal state, using robust detection that checks both `status` and `stop_reason` fields. This handles edge cases where the Letta server completes a run but doesn't update the status field.
+
 ---
 
 # Configuration Reference
@@ -745,7 +828,8 @@ lettactl apply -f agents.yml
 agents:
   - name: agent-name                    # Required: unique identifier
     description: "What this agent does" # Required: human description
-    
+    reasoning: true                     # Optional: enable reasoning (default: true)
+
     # LLM configuration (required, should be first)
     llm_config:
       model: "google_ai/gemini-2.5-pro" # Required
@@ -763,6 +847,15 @@ agents:
       - archival_memory_search
       - tools/*                         # Auto-discover from tools/ folder
       - custom_tool_name                # Specific custom tools
+
+    # MCP tools (optional) - reference tools from MCP servers
+    mcp_tools:
+      - server: my-mcp-server           # MCP server name (defined in mcp_servers)
+        tools: all                      # Include all tools from server
+      - server: another-server
+        tools:                          # Or specify individual tools
+          - specific_tool_1
+          - specific_tool_2
     
     # Shared blocks (optional)
     shared_blocks:
@@ -777,6 +870,13 @@ agents:
         mutable: true                   # Optional: if false, value syncs from YAML on every apply
         value: "Direct content"         # Option 1: inline
         from_file: "blocks/file.md"    # Option 2: from file
+
+    # Archives (archival memory store) (optional)
+    archives:
+      # Note: only one archive is supported per agent
+      - name: knowledge-archive
+        description: "Long-term knowledge base"
+        embedding: "letta/letta-free"
     
     # File attachments (optional)
     folders:
@@ -785,7 +885,7 @@ agents:
           - "files/*"                   # Auto-discover files
           - "files/specific-file.pdf"   # Specific files
     
-    embedding: "letta/letta-free"       # Optional: embedding model
+    embedding: "openai/text-embedding-3-small"       # Optional: embedding model
 ```
 
 ### Shared Blocks Schema

package/dist/commands/apply/apply.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"apply.d.ts","sourceRoot":"","sources":["../../../src/commands/apply/apply.ts"],"names":[],"mappings":"AAeA,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AAEvC,wBAAsB,YAAY,CAAC,OAAO,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,iBA6RrE"}
+{"version":3,"file":"apply.d.ts","sourceRoot":"","sources":["../../../src/commands/apply/apply.ts"],"names":[],"mappings":"AAkBA,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AAGvC,wBAAsB,YAAY,CAAC,OAAO,EAAE,YAAY,EAAE,OAAO,EAAE,GAAG,iBA6VrE"}

package/dist/commands/apply/apply.js

@@ -1,9 +1,43 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.applyCommand = applyCommand;
 const fleet_parser_1 = require("../../lib/fleet-parser");
 const letta_client_1 = require("../../lib/letta-client");
 const block_manager_1 = require("../../lib/block-manager");
+const archive_manager_1 = require("../../lib/archive-manager");
 const agent_manager_1 = require("../../lib/agent-manager");
 const diff_engine_1 = require("../../lib/diff-engine");
 const file_content_tracker_1 = require("../../lib/file-content-tracker");
@@ -16,6 +50,9 @@ const dry_run_1 = require("../../lib/dry-run");
 const logger_1 = require("../../lib/logger");
 const builtin_tools_1 = require("../../lib/builtin-tools");
 const display_1 = require("../../lib/ux/display");
+const mcp_tools_1 = require("../../lib/mcp-tools");
+const agent_manifest_1 = require("../../lib/agent-manifest");
+const path = __importStar(require("path"));
 async function applyCommand(options, command) {
     // Quiet mode overrides verbose
     const verbose = (0, logger_1.isQuietMode)() ? false : (command.parent?.opts().verbose || false);
@@ -49,13 +86,16 @@ async function applyCommand(options, command) {
         // Validate embedding configuration for self-hosted environments
         const isSelfHosted = !process.env.LETTA_BASE_URL?.includes('letta.com');
         if (isSelfHosted) {
-            const agentsWithoutEmbedding = config.agents.filter((agent) => !agent.embedding);
+            const agentsWithoutEmbedding = config.agents.filter((agent) => !agent.embedding && !agent.embedding_config);
             if (agentsWithoutEmbedding.length > 0) {
                 const names = agentsWithoutEmbedding.map((a) => a.name).join(', ');
                 throw new Error(`Self-hosted Letta requires explicit embedding configuration.\n` +
                     `Agents missing embedding: ${names}\n\n` +
-                    `Add an embedding field to each agent:\n` +
-                    `  embedding: "openai/text-embedding-3-small"\n\n` +
+                    `Add an embedding or embedding_config field to each agent:\n` +
+                    `  embedding: "openai/text-embedding-3-small"\n` +
+                    `  # OR\n` +
+                    `  embedding_config:\n` +
+                    `    embedding_model: "nomic-embed-text:latest"\n\n` +
                     `Common embedding providers:\n` +
                     `  - openai/text-embedding-3-small\n` +
                     `  - openai/text-embedding-3-large\n` +
@@ -72,13 +112,17 @@ async function applyCommand(options, command) {
         const client = new letta_client_1.LettaClientWrapper();
         const blockManager = new block_manager_1.BlockManager(client);
         const agentManager = new agent_manager_1.AgentManager(client);
-        const diffEngine = new diff_engine_1.DiffEngine(client, blockManager, parser.basePath);
+        const archiveManager = new archive_manager_1.ArchiveManager(client);
+        const diffEngine = new diff_engine_1.DiffEngine(client, blockManager, archiveManager, parser.basePath);
         const fileTracker = new file_content_tracker_1.FileContentTracker(parser.basePath, parser.storageBackend);
         // Load existing resources
         const loadSpinner = (0, spinner_1.createSpinner)('Loading existing resources...', spinnerEnabled).start();
         if (verbose)
             (0, logger_1.log)('Loading existing blocks...');
         await blockManager.loadExistingBlocks();
+        if (verbose)
+            (0, logger_1.log)('Loading existing archives...');
+        await archiveManager.loadExistingArchives();
         if (verbose)
             (0, logger_1.log)('Loading existing agents...');
         await agentManager.loadExistingAgents();
@@ -88,6 +132,7 @@ async function applyCommand(options, command) {
             const results = await (0, dry_run_1.computeDryRunDiffs)(config, {
                 client,
                 blockManager,
+                archiveManager,
                 agentManager,
                 diffEngine,
                 fileTracker,
@@ -102,28 +147,8 @@ async function applyCommand(options, command) {
         const blockSpinner = (0, spinner_1.createSpinner)('Processing shared blocks...', spinnerEnabled).start();
         const sharedBlockIds = await (0, apply_helpers_1.processSharedBlocks)(config, blockManager, verbose);
         blockSpinner.succeed(`Processed ${sharedBlockIds.size} shared blocks`);
-        // Generate tool source hashes and register tools
-        const allToolNames = new Set();
-        for (const agent of config.agents) {
-            for (const toolName of agent.tools || []) {
-                allToolNames.add(toolName);
-            }
-            // Include file search tools for agents with folders
-            if ((agent.folders || []).length > 0) {
-                for (const fileTool of builtin_tools_1.FILE_SEARCH_TOOLS) {
-                    allToolNames.add(fileTool);
-                }
-            }
-        }
-        const globalToolSourceHashes = fileTracker.generateToolSourceHashes(Array.from(allToolNames), parser.toolConfigs);
-        const toolSpinner = (0, spinner_1.createSpinner)('Registering tools...', spinnerEnabled).start();
-        if (verbose)
-            (0, logger_1.log)('Registering tools...');
-        const { toolNameToId, updatedTools, builtinTools } = await parser.registerRequiredTools(config, client, verbose, globalToolSourceHashes);
-        const builtinCount = builtinTools.size;
-        const customCount = toolNameToId.size - builtinCount;
-        toolSpinner.succeed(`Registered ${customCount} custom, ${builtinCount} builtin tools`);
         // Register MCP servers
+        let mcpServerNameToId = new Map();
         if (config.mcp_servers && config.mcp_servers.length > 0) {
             const mcpSpinner = (0, spinner_1.createSpinner)('Registering MCP servers...', spinnerEnabled).start();
             if (verbose)
@@ -144,6 +169,29 @@ async function applyCommand(options, command) {
                 (0, logger_1.warn)(`MCP servers failed: ${mcpResult.failed.join(', ')}`);
             }
         }
+        mcpServerNameToId = await (0, mcp_tools_1.buildMcpServerRegistry)(client);
+        await (0, mcp_tools_1.expandMcpToolsForAgents)(config, client, mcpServerNameToId, verbose);
+        // Generate tool source hashes and register tools
+        const allToolNames = new Set();
+        for (const agent of config.agents) {
+            for (const toolName of agent.tools || []) {
+                allToolNames.add(toolName);
+            }
+            // Include file search tools for agents with folders
+            if ((agent.folders || []).length > 0) {
+                for (const fileTool of builtin_tools_1.FILE_SEARCH_TOOLS) {
+                    allToolNames.add(fileTool);
+                }
+            }
+        }
+        const globalToolSourceHashes = fileTracker.generateToolSourceHashes(Array.from(allToolNames), parser.toolConfigs);
+        const toolSpinner = (0, spinner_1.createSpinner)('Registering tools...', spinnerEnabled).start();
+        if (verbose)
+            (0, logger_1.log)('Registering tools...');
+        const { toolNameToId, updatedTools, builtinTools } = await parser.registerRequiredTools(config, client, verbose, globalToolSourceHashes);
+        const builtinCount = builtinTools.size;
+        const customCount = toolNameToId.size - builtinCount;
+        toolSpinner.succeed(`Registered ${customCount} custom, ${builtinCount} builtin tools`);
         // Process folders
         const folderSpinner = (0, spinner_1.createSpinner)('Processing folders...', spinnerEnabled).start();
         const createdFolders = await (0, apply_helpers_1.processFolders)(config, client, parser, options, verbose);
@@ -155,6 +203,7 @@ async function applyCommand(options, command) {
         const succeeded = [];
         const failed = [];
         const skipped = [];
+        const appliedAgents = new Map();
         for (const agent of config.agents) {
             if (options.agent && !agent.name.includes(options.agent))
                 continue;
@@ -162,6 +211,7 @@ async function applyCommand(options, command) {
                 (0, logger_1.log)(`  Description: ${agent.description}`);
                 (0, logger_1.log)(`  Tools: ${agent.tools?.join(', ') || 'none'}`);
                 (0, logger_1.log)(`  Memory blocks: ${agent.memory_blocks?.length || 0}`);
+                (0, logger_1.log)(`  Archives: ${agent.archives?.length || 0}`);
                 (0, logger_1.log)(`  Folders: ${agent.folders?.length || 0}`);
             }
             try {
@@ -192,6 +242,7 @@ async function applyCommand(options, command) {
                     toolSourceHashes,
                     model: agent.llm_config?.model,
                     embedding: agent.embedding,
+                    embeddingConfig: agent.embedding_config,
                     contextWindow: agent.llm_config?.context_window,
                     reasoning: agent.reasoning,
                     memoryBlocks: (agent.memory_blocks || []).map((block) => ({
@@ -201,6 +252,20 @@ async function applyCommand(options, command) {
                         value: block.value || '',
                         mutable: block.mutable
                     })),
+                    archives: (agent.archives || []).map((archive) => {
+                        const resolved = {
+                            name: archive.name,
+                            description: archive.description,
+                            embedding_config: archive.embedding_config
+                        };
+                        if (archive.embedding) {
+                            resolved.embedding = archive.embedding;
+                        }
+                        else if (!archive.embedding_config && agent.embedding) {
+                            resolved.embedding = agent.embedding;
+                        }
+                        return resolved;
+                    }),
                     memoryBlockFileHashes,
                     folders: (agent.folders || []).map((folder) => ({
                         name: folder.name,
@@ -216,6 +281,10 @@ async function applyCommand(options, command) {
                     const changes = agentManager.getConfigChanges(existingAgent, agentConfig);
                     if (!changes.hasChanges) {
                         skipped.push(agent.name);
+                        appliedAgents.set(agent.name, {
+                            id: existingAgent.id,
+                            resolvedName: existingAgent.name
+                        });
                         if (verbose)
                             (0, logger_1.log)(`Agent ${agent.name} already up to date`);
                         continue;
@@ -233,18 +302,24 @@ async function applyCommand(options, command) {
                         builtinTools,
                         createdFolders,
                         sharedBlockIds,
+                        archiveManager,
                         spinnerEnabled,
                         verbose,
                         force: options.force || false,
                         previousFolderFileHashes
                     });
                     succeeded.push(agent.name);
+                    appliedAgents.set(agent.name, {
+                        id: existingAgent.id,
+                        resolvedName: existingAgent.name
+                    });
                 }
                 else {
                     // Create new agent
-                    await (0, apply_helpers_1.createNewAgent)(agent, agentName, {
+                    const createdAgent = await (0, apply_helpers_1.createNewAgent)(agent, agentName, {
                         client,
                         blockManager,
+                        archiveManager,
                         agentManager,
                         toolNameToId,
                         builtinTools,
@@ -255,6 +330,10 @@ async function applyCommand(options, command) {
                         folderContentHashes
                     });
                     succeeded.push(agent.name);
+                    appliedAgents.set(agent.name, {
+                        id: createdAgent.id,
+                        resolvedName: createdAgent.name
+                    });
                 }
             }
             catch (err) {
@@ -274,6 +353,28 @@ async function applyCommand(options, command) {
         else {
             (0, logger_1.log)((0, display_1.displayApplySummary)(summaryData));
         }
+        // Only generate manifest if explicitly requested via --manifest flag
+        if (options.manifest !== undefined) {
+            // --manifest without path gives true, --manifest <path> gives the path string
+            const manifestPath = typeof options.manifest === 'string'
+                ? path.resolve(options.manifest)
+                : (0, agent_manifest_1.getDefaultManifestPath)(options.file);
+            const manifest = (0, agent_manifest_1.buildAgentManifest)({
+                config,
+                configPath: options.file,
+                basePath: parser.basePath,
+                appliedAgents,
+                agentManager,
+                blockManager,
+                archiveManager,
+                sharedBlockIds,
+                toolNameToId,
+                folderNameToId: createdFolders,
+                mcpServerNameToId
+            });
+            (0, agent_manifest_1.writeAgentManifest)(manifest, manifestPath);
+            (0, logger_1.log)(`Agent manifest written to ${manifestPath}`);
+        }
     }
     catch (err) {
         throw new Error(`Apply failed: ${(0, error_handler_1.formatLettaError)(err.message || err)}`);

package/dist/commands/apply/apply.js.map

@@ -1 +1 @@
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package/dist/commands/apply/template.d.ts

@@ -9,5 +9,6 @@ export declare function applyTemplateMode(options: {
     match: string;
     dryRun?: boolean;
     root?: string;
+    manifest?: string;
 }, config: any, parser: FleetParser, command: any): Promise<void>;
 //# sourceMappingURL=template.d.ts.map

package/dist/commands/apply/template.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"template.d.ts","sourceRoot":"","sources":["../../../src/commands/apply/template.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAYrD;;;;GAIG;AACH,wBAAsB,iBAAiB,CACrC,OAAO,EAAE;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAA;CAAE,EACzE,MAAM,EAAE,GAAG,EACX,MAAM,EAAE,WAAW,EACnB,OAAO,EAAE,GAAG,GACX,OAAO,CAAC,IAAI,CAAC,CAyKf"}
+{"version":3,"file":"template.d.ts","sourceRoot":"","sources":["../../../src/commands/apply/template.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAcrD;;;;GAIG;AACH,wBAAsB,iBAAiB,CACrC,OAAO,EAAE;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAA;CAAE,EAC5F,MAAM,EAAE,GAAG,EACX,MAAM,EAAE,WAAW,EACnB,OAAO,EAAE,GAAG,GACX,OAAO,CAAC,IAAI,CAAC,CAqLf"}

package/dist/commands/apply/template.js

@@ -3,6 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.applyTemplateMode = applyTemplateMode;
 const letta_client_1 = require("../../lib/letta-client");
 const block_manager_1 = require("../../lib/block-manager");
+const archive_manager_1 = require("../../lib/archive-manager");
 const diff_engine_1 = require("../../lib/diff-engine");
 const file_content_tracker_1 = require("../../lib/file-content-tracker");
 const output_formatter_1 = require("../../lib/ux/output-formatter");
@@ -11,6 +12,7 @@ const minimatch_1 = require("minimatch");
 const last_applied_config_1 = require("../../lib/last-applied-config");
 const response_normalizer_1 = require("../../lib/response-normalizer");
 const logger_1 = require("../../lib/logger");
+const mcp_tools_1 = require("../../lib/mcp-tools");
 /**
  * Template mode: apply a template config to all existing agents matching a glob pattern.
  * Uses kubectl-style three-way merge: removes resources only if they were previously
@@ -54,10 +56,20 @@ async function applyTemplateMode(options, config, parser, command) {
     }
     // Initialize managers
     const blockManager = new block_manager_1.BlockManager(client);
-    const diffEngine = new diff_engine_1.DiffEngine(client, blockManager, parser.basePath);
+    const archiveManager = new archive_manager_1.ArchiveManager(client);
+    const diffEngine = new diff_engine_1.DiffEngine(client, blockManager, archiveManager, parser.basePath);
     const fileTracker = new file_content_tracker_1.FileContentTracker(parser.basePath, parser.storageBackend);
     const createdFolders = new Map();
     await blockManager.loadExistingBlocks();
+    await archiveManager.loadExistingArchives();
+    // Register MCP servers (if configured) and expand MCP tool selections
+    if (config.mcp_servers && config.mcp_servers.length > 0) {
+        const mcpSpinner = (0, spinner_1.createSpinner)('Registering MCP servers...', spinnerEnabled).start();
+        await parser.registerMcpServers(config, client, verbose);
+        mcpSpinner.succeed(`Registered ${config.mcp_servers.length} MCP servers`);
+    }
+    const mcpServerNameToId = await (0, mcp_tools_1.buildMcpServerRegistry)(client);
+    await (0, mcp_tools_1.expandMcpToolsForAgents)(config, client, mcpServerNameToId, verbose);
     // Process shared blocks from template
     const sharedBlockIds = new Map();
     if (config.shared_blocks?.length) {
@@ -95,6 +107,7 @@ async function applyTemplateMode(options, config, parser, command) {
                 toolSourceHashes,
                 sharedBlocks: templateSharedBlocks,
                 embedding: templateAgent?.embedding,
+                embeddingConfig: templateAgent?.embedding_config,
                 model: templateAgent?.llm_config?.model,
                 contextWindow: templateAgent?.llm_config?.context_window,
             };
@@ -103,7 +116,7 @@ async function applyTemplateMode(options, config, parser, command) {
                 id: existingAgent.id,
                 name: existingAgent.name,
                 baseName: existingAgent.name,
-                configHashes: { overall: '', systemPrompt: '', tools: '', model: '', memoryBlocks: '', folders: '', sharedBlocks: '' },
+                configHashes: { overall: '', systemPrompt: '', tools: '', model: '', memoryBlocks: '', folders: '', sharedBlocks: '', archives: '' },
                 version: 'latest',
                 lastUpdated: existingAgent.updated_at || new Date().toISOString()
             };