learning-agent 0.1.0 → 0.2.1

package/dist/cli.js

@@ -1,16 +1,133 @@
 #!/usr/bin/env node
-import chalk from 'chalk';
 import { Command } from 'commander';
-import { statSync, mkdirSync } from 'fs';
-import { join, dirname } from 'path';
+import chalk from 'chalk';
+import { statSync, existsSync, chmodSync, mkdirSync } from 'fs';
 import * as fs from 'fs/promises';
-import { mkdir, appendFile, readFile, writeFile, rename } from 'fs/promises';
+import { readFile, mkdir, writeFile, rename, appendFile } from 'fs/promises';
+import { homedir } from 'os';
+import { join, dirname } from 'path';
 import { createHash } from 'crypto';
-import Database from 'better-sqlite3';
 import { z } from 'zod';
-import 'node-llama-cpp';
-import { homedir } from 'os';
+import Database from 'better-sqlite3';
+import { resolveModelFile, getLlama } from 'node-llama-cpp';
+
+// src/cli-utils.ts
+function formatBytes(bytes) {
+  if (bytes === 0) return "0 B";
+  if (bytes < 1024) return `${bytes} B`;
+  const kb = bytes / 1024;
+  if (kb < 1024) return `${kb.toFixed(1)} KB`;
+  const mb = kb / 1024;
+  return `${mb.toFixed(1)} MB`;
+}
+function parseLimit(value, name) {
+  const parsed = parseInt(value, 10);
+  if (Number.isNaN(parsed) || parsed <= 0) {
+    throw new Error(`Invalid ${name}: must be a positive integer`);
+  }
+  return parsed;
+}
+function getRepoRoot() {
+  return process.env["LEARNING_AGENT_ROOT"] ?? process.cwd();
+}
+
+// src/cli/shared.ts
+var out = {
+  success: (msg) => console.log(chalk.green("[ok]"), msg),
+  error: (msg) => console.error(chalk.red("[error]"), msg),
+  info: (msg) => console.log(chalk.blue("[info]"), msg),
+  warn: (msg) => console.log(chalk.yellow("[warn]"), msg)
+};
+function getGlobalOpts(cmd) {
+  const opts = cmd.optsWithGlobals();
+  return {
+    verbose: opts.verbose ?? false,
+    quiet: opts.quiet ?? false
+  };
+}
+var DEFAULT_SEARCH_LIMIT = "10";
+var DEFAULT_LIST_LIMIT = "20";
+var DEFAULT_CHECK_PLAN_LIMIT = "5";
+var ISO_DATE_PREFIX_LENGTH = 10;
+var AVG_DECIMAL_PLACES = 1;
+var RELEVANCE_DECIMAL_PLACES = 2;
+var JSON_INDENT_SPACES = 2;
+var PRE_COMMIT_MESSAGE = `Before committing, have you captured any valuable lessons from this session?
+Consider: corrections, mistakes, or insights worth remembering.
 
+To capture a lesson:
+  npx lna capture --trigger "what happened" --insight "what to do" --yes`;
+var PRE_COMMIT_HOOK_TEMPLATE = `#!/bin/sh
+# Learning Agent pre-commit hook
+# Reminds Claude to consider capturing lessons before commits
+
+npx lna hooks run pre-commit
+`;
+var CLAUDE_HOOK_MARKER = "lna load-session";
+var CLAUDE_HOOK_MARKER_LEGACY = "learning-agent load-session";
+var CLAUDE_HOOK_CONFIG = {
+  matcher: "startup|resume|compact",
+  hooks: [
+    {
+      type: "command",
+      command: "npx lna load-session 2>/dev/null || true"
+    }
+  ]
+};
+var HOOK_MARKER = "# Learning Agent pre-commit hook";
+function getClaudeSettingsPath(global) {
+  if (global) {
+    return join(homedir(), ".claude", "settings.json");
+  }
+  const repoRoot = getRepoRoot();
+  return join(repoRoot, ".claude", "settings.json");
+}
+async function readClaudeSettings(settingsPath) {
+  if (!existsSync(settingsPath)) {
+    return {};
+  }
+  const content = await readFile(settingsPath, "utf-8");
+  return JSON.parse(content);
+}
+function hasClaudeHook(settings) {
+  const hooks = settings.hooks;
+  if (!hooks?.SessionStart) return false;
+  return hooks.SessionStart.some((entry) => {
+    const hookEntry = entry;
+    return hookEntry.hooks?.some(
+      (h) => h.command?.includes(CLAUDE_HOOK_MARKER) || h.command?.includes(CLAUDE_HOOK_MARKER_LEGACY)
+    );
+  });
+}
+function addLearningAgentHook(settings) {
+  if (!settings.hooks) {
+    settings.hooks = {};
+  }
+  const hooks = settings.hooks;
+  if (!hooks.SessionStart) {
+    hooks.SessionStart = [];
+  }
+  hooks.SessionStart.push(CLAUDE_HOOK_CONFIG);
+}
+function removeLearningAgentHook(settings) {
+  const hooks = settings.hooks;
+  if (!hooks?.SessionStart) return false;
+  const originalLength = hooks.SessionStart.length;
+  hooks.SessionStart = hooks.SessionStart.filter((entry) => {
+    const hookEntry = entry;
+    return !hookEntry.hooks?.some(
+      (h) => h.command?.includes(CLAUDE_HOOK_MARKER) || h.command?.includes(CLAUDE_HOOK_MARKER_LEGACY)
+    );
+  });
+  return hooks.SessionStart.length < originalLength;
+}
+async function writeClaudeSettings(settingsPath, settings) {
+  const dir = dirname(settingsPath);
+  await mkdir(dir, { recursive: true });
+  const tempPath = settingsPath + ".tmp";
+  await writeFile(tempPath, JSON.stringify(settings, null, 2) + "\n", "utf-8");
+  await rename(tempPath, settingsPath);
+}
 var SourceSchema = z.enum([
   "user_correction",
   "self_correction",
@@ -132,8 +249,6 @@ async function readLessons(repoRoot, options = {}) {
   }
   return { lessons: Array.from(lessons.values()), skippedCount };
 }
-
-// src/storage/sqlite.ts
 var DB_PATH = ".claude/.cache/lessons.sqlite";
 var SCHEMA_SQL = `
   -- Main lessons table
@@ -216,6 +331,28 @@ function openDb(repoRoot) {
   createSchema(db);
   return db;
 }
+function getCachedEmbedding(repoRoot, lessonId, expectedHash) {
+  const database = openDb(repoRoot);
+  const row = database.prepare("SELECT embedding, content_hash FROM lessons WHERE id = ?").get(lessonId);
+  if (!row || !row.embedding || !row.content_hash) {
+    return null;
+  }
+  if (expectedHash && row.content_hash !== expectedHash) {
+    return null;
+  }
+  const float32 = new Float32Array(
+    row.embedding.buffer,
+    row.embedding.byteOffset,
+    row.embedding.byteLength / 4
+  );
+  return Array.from(float32);
+}
+function setCachedEmbedding(repoRoot, lessonId, embedding, hash) {
+  const database = openDb(repoRoot);
+  const float32 = embedding instanceof Float32Array ? embedding : new Float32Array(embedding);
+  const buffer = Buffer.from(float32.buffer, float32.byteOffset, float32.byteLength);
+  database.prepare("UPDATE lessons SET embedding = ?, content_hash = ? WHERE id = ?").run(buffer, hash, lessonId);
+}
 function rowToLesson(row) {
   const lesson = {
     id: row.id,
@@ -380,117 +517,559 @@ function getRetrievalStats(repoRoot) {
     lastRetrieved: row.last_retrieved
   }));
 }
-
-// src/capture/quality.ts
-var DEFAULT_SIMILARITY_THRESHOLD = 0.8;
-async function isNovel(repoRoot, insight, options = {}) {
-  const threshold = options.threshold ?? DEFAULT_SIMILARITY_THRESHOLD;
-  await syncIfNeeded(repoRoot);
-  const words = insight.toLowerCase().replace(/[^a-z0-9\s]/g, "").split(/\s+/).filter((w) => w.length > 3).slice(0, 3);
-  if (words.length === 0) {
-    return { novel: true };
-  }
-  const searchQuery = words.join(" OR ");
-  const results = await searchKeyword(repoRoot, searchQuery, 10);
-  if (results.length === 0) {
-    return { novel: true };
+var ARCHIVE_DIR = ".claude/lessons/archive";
+var TOMBSTONE_THRESHOLD = 100;
+var ARCHIVE_AGE_DAYS = 90;
+var MS_PER_DAY = 1e3 * 60 * 60 * 24;
+var MONTH_INDEX_OFFSET = 1;
+var MONTH_PAD_LENGTH = 2;
+function getArchivePath(repoRoot, date) {
+  const year = date.getFullYear();
+  const month = String(date.getMonth() + MONTH_INDEX_OFFSET).padStart(MONTH_PAD_LENGTH, "0");
+  return join(repoRoot, ARCHIVE_DIR, `${year}-${month}.jsonl`);
+}
+async function parseRawJsonlLines(repoRoot) {
+  const filePath = join(repoRoot, LESSONS_PATH);
+  let content;
+  try {
+    content = await readFile(filePath, "utf-8");
+  } catch {
+    return [];
   }
-  const insightWords = new Set(insight.toLowerCase().split(/\s+/));
-  for (const lesson of results) {
-    const lessonWords = new Set(lesson.insight.toLowerCase().split(/\s+/));
-    const intersection = [...insightWords].filter((w) => lessonWords.has(w)).length;
-    const union = (/* @__PURE__ */ new Set([...insightWords, ...lessonWords])).size;
-    const similarity = union > 0 ? intersection / union : 0;
-    if (similarity >= threshold) {
-      return {
-        novel: false,
-        reason: `Found similar existing lesson: "${lesson.insight.slice(0, 50)}..."`,
-        existingId: lesson.id
-      };
-    }
-    if (lesson.insight.toLowerCase() === insight.toLowerCase()) {
-      return {
-        novel: false,
-        reason: `Exact duplicate found`,
-        existingId: lesson.id
-      };
+  const results = [];
+  for (const line of content.split("\n")) {
+    const trimmed = line.trim();
+    if (!trimmed) continue;
+    try {
+      const parsed = JSON.parse(trimmed);
+      results.push({ line: trimmed, parsed });
+    } catch {
+      results.push({ line: trimmed, parsed: null });
     }
   }
-  return { novel: true };
+  return results;
 }
-var MIN_WORD_COUNT = 4;
-var VAGUE_PATTERNS = [
-  /\bwrite better\b/i,
-  /\bbe careful\b/i,
-  /\bremember to\b/i,
-  /\bmake sure\b/i,
-  /\btry to\b/i,
-  /\bdouble check\b/i
-];
-var GENERIC_IMPERATIVE_PATTERN = /^(always|never)\s+\w+(\s+\w+){0,2}$/i;
-function isSpecific(insight) {
-  const words = insight.trim().split(/\s+/).filter((w) => w.length > 0);
-  if (words.length < MIN_WORD_COUNT) {
-    return { specific: false, reason: "Insight is too short to be actionable" };
-  }
-  for (const pattern of VAGUE_PATTERNS) {
-    if (pattern.test(insight)) {
-      return { specific: false, reason: "Insight matches a vague pattern" };
+async function countTombstones(repoRoot) {
+  const lines = await parseRawJsonlLines(repoRoot);
+  let count = 0;
+  for (const { parsed } of lines) {
+    if (parsed && parsed["deleted"] === true) {
+      count++;
     }
   }
-  if (GENERIC_IMPERATIVE_PATTERN.test(insight)) {
-    return { specific: false, reason: "Insight matches a vague pattern" };
-  }
-  return { specific: true };
+  return count;
 }
-var ACTION_PATTERNS = [
-  /\buse\s+.+\s+instead\s+of\b/i,
-  // "use X instead of Y"
-  /\bprefer\s+.+\s+(over|to)\b/i,
-  // "prefer X over Y" or "prefer X to Y"
-  /\balways\s+.+\s+when\b/i,
-  // "always X when Y"
-  /\bnever\s+.+\s+without\b/i,
-  // "never X without Y"
-  /\bavoid\s+(using\s+)?\w+/i,
-  // "avoid X" or "avoid using X"
-  /\bcheck\s+.+\s+before\b/i,
-  // "check X before Y"
-  /^(run|use|add|remove|install|update|configure|set|enable|disable)\s+/i
-  // Imperative commands at start
-];
-function isActionable(insight) {
-  for (const pattern of ACTION_PATTERNS) {
-    if (pattern.test(insight)) {
-      return { actionable: true };
+async function needsCompaction(repoRoot) {
+  const count = await countTombstones(repoRoot);
+  return count >= TOMBSTONE_THRESHOLD;
+}
+async function rewriteWithoutTombstones(repoRoot) {
+  const filePath = join(repoRoot, LESSONS_PATH);
+  const tempPath = filePath + ".tmp";
+  const { lessons } = await readLessons(repoRoot);
+  const tombstoneCount = await countTombstones(repoRoot);
+  await mkdir(dirname(filePath), { recursive: true });
+  const lines = lessons.map((lesson) => JSON.stringify(lesson) + "\n");
+  await writeFile(tempPath, lines.join(""), "utf-8");
+  await rename(tempPath, filePath);
+  return tombstoneCount;
+}
+function shouldArchive(lesson, now) {
+  const created = new Date(lesson.created);
+  const ageMs = now.getTime() - created.getTime();
+  const ageDays = ageMs / MS_PER_DAY;
+  return ageDays > ARCHIVE_AGE_DAYS && (lesson.retrievalCount === void 0 || lesson.retrievalCount === 0);
+}
+async function archiveOldLessons(repoRoot) {
+  const { lessons } = await readLessons(repoRoot);
+  const now = /* @__PURE__ */ new Date();
+  const toArchive = [];
+  const toKeep = [];
+  for (const lesson of lessons) {
+    if (shouldArchive(lesson, now)) {
+      toArchive.push(lesson);
+    } else {
+      toKeep.push(lesson);
     }
   }
-  return { actionable: false, reason: "Insight lacks clear action guidance" };
-}
-async function shouldPropose(repoRoot, insight) {
-  const specificResult = isSpecific(insight);
-  if (!specificResult.specific) {
-    return { shouldPropose: false, reason: specificResult.reason };
+  if (toArchive.length === 0) {
+    return 0;
   }
-  const actionableResult = isActionable(insight);
-  if (!actionableResult.actionable) {
-    return { shouldPropose: false, reason: actionableResult.reason };
+  const archiveGroups = /* @__PURE__ */ new Map();
+  for (const lesson of toArchive) {
+    const created = new Date(lesson.created);
+    const archivePath = getArchivePath(repoRoot, created);
+    const group = archiveGroups.get(archivePath) ?? [];
+    group.push(lesson);
+    archiveGroups.set(archivePath, group);
   }
-  const noveltyResult = await isNovel(repoRoot, insight);
-  if (!noveltyResult.novel) {
-    return { shouldPropose: false, reason: noveltyResult.reason };
+  const archiveDir = join(repoRoot, ARCHIVE_DIR);
+  await mkdir(archiveDir, { recursive: true });
+  for (const [archivePath, archiveLessons] of archiveGroups) {
+    const lines2 = archiveLessons.map((l) => JSON.stringify(l) + "\n").join("");
+    await appendFile(archivePath, lines2, "utf-8");
   }
-  return { shouldPropose: true };
+  const filePath = join(repoRoot, LESSONS_PATH);
+  const tempPath = filePath + ".tmp";
+  await mkdir(dirname(filePath), { recursive: true });
+  const lines = toKeep.map((lesson) => JSON.stringify(lesson) + "\n");
+  await writeFile(tempPath, lines.join(""), "utf-8");
+  await rename(tempPath, filePath);
+  return toArchive.length;
 }
-
-// src/capture/triggers.ts
-var USER_CORRECTION_PATTERNS = [
-  /\bno\b[,.]?\s/i,
-  // "no, ..." or "no ..."
-  /\bwrong\b/i,
-  // "wrong"
-  /\bactually\b/i,
-  // "actually..."
+async function compact(repoRoot) {
+  const tombstonesBefore = await countTombstones(repoRoot);
+  const archived = await archiveOldLessons(repoRoot);
+  const tombstonesAfterArchive = await countTombstones(repoRoot);
+  await rewriteWithoutTombstones(repoRoot);
+  const tombstonesRemoved = archived > 0 ? tombstonesBefore : tombstonesAfterArchive;
+  const { lessons } = await readLessons(repoRoot);
+  return {
+    archived,
+    tombstonesRemoved,
+    lessonsRemaining: lessons.length
+  };
+}
+
+// src/cli/commands/stats.ts
+function registerStatsCommand(program2) {
+  program2.command("stats").description("Show database health and statistics").action(async () => {
+    const repoRoot = getRepoRoot();
+    await syncIfNeeded(repoRoot);
+    const { lessons } = await readLessons(repoRoot);
+    const deletedCount = await countTombstones(repoRoot);
+    const totalLessons = lessons.length;
+    const retrievalStats = getRetrievalStats(repoRoot);
+    const totalRetrievals = retrievalStats.reduce((sum, s) => sum + s.count, 0);
+    const avgRetrievals = totalLessons > 0 ? (totalRetrievals / totalLessons).toFixed(AVG_DECIMAL_PLACES) : "0.0";
+    const jsonlPath = join(repoRoot, LESSONS_PATH);
+    const dbPath = join(repoRoot, DB_PATH);
+    let dataSize = 0;
+    let indexSize = 0;
+    try {
+      dataSize = statSync(jsonlPath).size;
+    } catch {
+    }
+    try {
+      indexSize = statSync(dbPath).size;
+    } catch {
+    }
+    const totalSize = dataSize + indexSize;
+    const deletedInfo = deletedCount > 0 ? ` (${deletedCount} deleted)` : "";
+    console.log(`Lessons: ${totalLessons} total${deletedInfo}`);
+    console.log(`Retrievals: ${totalRetrievals} total, ${avgRetrievals} avg per lesson`);
+    console.log(`Storage: ${formatBytes(totalSize)} (index: ${formatBytes(indexSize)}, data: ${formatBytes(dataSize)})`);
+  });
+}
+function registerListCommand(program2) {
+  program2.command("list").description("List all lessons").option("-n, --limit <number>", "Maximum results", DEFAULT_LIST_LIMIT).action(async function(options) {
+    const repoRoot = getRepoRoot();
+    const limit = parseLimit(options.limit, "limit");
+    const { verbose, quiet } = getGlobalOpts(this);
+    const { lessons, skippedCount } = await readLessons(repoRoot);
+    if (lessons.length === 0) {
+      console.log('No lessons found. Get started with: learn "Your first lesson"');
+      if (skippedCount > 0) {
+        out.warn(`${skippedCount} corrupted lesson(s) skipped.`);
+      }
+      return;
+    }
+    const toShow = lessons.slice(0, limit);
+    if (!quiet) {
+      out.info(`Showing ${toShow.length} of ${lessons.length} lesson(s):
+`);
+    }
+    for (const lesson of toShow) {
+      console.log(`[${chalk.cyan(lesson.id)}] ${lesson.insight}`);
+      if (verbose) {
+        console.log(`  Type: ${lesson.type} | Source: ${lesson.source}`);
+        console.log(`  Created: ${lesson.created}`);
+        if (lesson.context) {
+          console.log(`  Context: ${lesson.context.tool} - ${lesson.context.intent}`);
+        }
+      } else {
+        console.log(`  Type: ${lesson.type} | Source: ${lesson.source}`);
+      }
+      if (lesson.tags.length > 0) {
+        console.log(`  Tags: ${lesson.tags.join(", ")}`);
+      }
+      console.log();
+    }
+    if (skippedCount > 0) {
+      out.warn(`${skippedCount} corrupted lesson(s) skipped.`);
+    }
+  });
+}
+function registerSearchCommand(program2) {
+  program2.command("search <query>").description("Search lessons by keyword").option("-n, --limit <number>", "Maximum results", DEFAULT_SEARCH_LIMIT).action(async function(query, options) {
+    const repoRoot = getRepoRoot();
+    const limit = parseLimit(options.limit, "limit");
+    const { verbose, quiet } = getGlobalOpts(this);
+    await syncIfNeeded(repoRoot);
+    const results = await searchKeyword(repoRoot, query, limit);
+    if (results.length === 0) {
+      console.log('No lessons match your search. Try a different query or use "list" to see all lessons.');
+      return;
+    }
+    if (!quiet) {
+      out.info(`Found ${results.length} lesson(s):
+`);
+    }
+    for (const lesson of results) {
+      console.log(`[${chalk.cyan(lesson.id)}] ${lesson.insight}`);
+      console.log(`  Trigger: ${lesson.trigger}`);
+      if (verbose && lesson.context) {
+        console.log(`  Context: ${lesson.context.tool} - ${lesson.context.intent}`);
+        console.log(`  Created: ${lesson.created}`);
+      }
+      if (lesson.tags.length > 0) {
+        console.log(`  Tags: ${lesson.tags.join(", ")}`);
+      }
+      console.log();
+    }
+  });
+}
+
+// src/cli/commands/rebuild.ts
+function registerRebuildCommand(program2) {
+  program2.command("rebuild").description("Rebuild SQLite index from JSONL").option("-f, --force", "Force rebuild even if unchanged").action(async (options) => {
+    const repoRoot = getRepoRoot();
+    if (options.force) {
+      console.log("Forcing index rebuild...");
+      await rebuildIndex(repoRoot);
+      console.log("Index rebuilt.");
+    } else {
+      const rebuilt = await syncIfNeeded(repoRoot);
+      if (rebuilt) {
+        console.log("Index rebuilt (JSONL changed).");
+      } else {
+        console.log("Index is up to date.");
+      }
+    }
+  });
+}
+
+// src/cli/commands/export.ts
+function registerExportCommand(program2) {
+  program2.command("export").description("Export lessons as JSON to stdout").option("--since <date>", "Only include lessons created after this date (ISO8601)").option("--tags <tags>", "Filter by tags (comma-separated, OR logic)").action(async (options) => {
+    const repoRoot = getRepoRoot();
+    const { lessons } = await readLessons(repoRoot);
+    let filtered = lessons;
+    if (options.since) {
+      const sinceDate = new Date(options.since);
+      if (Number.isNaN(sinceDate.getTime())) {
+        console.error(`Invalid date format: ${options.since}. Use ISO8601 format (e.g., 2024-01-15).`);
+        process.exit(1);
+      }
+      filtered = filtered.filter((lesson) => new Date(lesson.created) >= sinceDate);
+    }
+    if (options.tags) {
+      const filterTags = options.tags.split(",").map((t) => t.trim());
+      filtered = filtered.filter((lesson) => lesson.tags.some((tag) => filterTags.includes(tag)));
+    }
+    console.log(JSON.stringify(filtered, null, JSON_INDENT_SPACES));
+  });
+}
+function registerImportCommand(program2) {
+  program2.command("import <file>").description("Import lessons from a JSONL file").action(async (file) => {
+    const repoRoot = getRepoRoot();
+    let content;
+    try {
+      content = await readFile(file, "utf-8");
+    } catch (err) {
+      const code = err.code;
+      if (code === "ENOENT") {
+        console.error(`Error: File not found: ${file}`);
+      } else {
+        console.error(`Error reading file: ${err.message}`);
+      }
+      process.exit(1);
+    }
+    const { lessons: existingLessons } = await readLessons(repoRoot);
+    const existingIds = new Set(existingLessons.map((l) => l.id));
+    const lines = content.split("\n");
+    let imported = 0;
+    let skipped = 0;
+    let invalid = 0;
+    for (const line of lines) {
+      const trimmed = line.trim();
+      if (!trimmed) continue;
+      let parsed;
+      try {
+        parsed = JSON.parse(trimmed);
+      } catch {
+        invalid++;
+        continue;
+      }
+      const result = LessonSchema.safeParse(parsed);
+      if (!result.success) {
+        invalid++;
+        continue;
+      }
+      const lesson = result.data;
+      if (existingIds.has(lesson.id)) {
+        skipped++;
+        continue;
+      }
+      await appendLesson(repoRoot, lesson);
+      existingIds.add(lesson.id);
+      imported++;
+    }
+    await syncIfNeeded(repoRoot);
+    const lessonWord = imported === 1 ? "lesson" : "lessons";
+    const parts = [];
+    if (skipped > 0) parts.push(`${skipped} skipped`);
+    if (invalid > 0) parts.push(`${invalid} invalid`);
+    if (parts.length > 0) {
+      console.log(`Imported ${imported} ${lessonWord} (${parts.join(", ")})`);
+    } else {
+      console.log(`Imported ${imported} ${lessonWord}`);
+    }
+  });
+}
+
+// src/cli/commands/compact.ts
+function registerCompactCommand(program2) {
+  program2.command("compact").description("Compact lessons: archive old lessons and remove tombstones").option("-f, --force", "Run compaction even if below threshold").option("--dry-run", "Show what would be done without making changes").action(async (options) => {
+    const repoRoot = getRepoRoot();
+    const tombstones = await countTombstones(repoRoot);
+    const needs = await needsCompaction(repoRoot);
+    if (options.dryRun) {
+      console.log("Dry run - no changes will be made.\n");
+      console.log(`Tombstones found: ${tombstones}`);
+      console.log(`Compaction needed: ${needs ? "yes" : "no"}`);
+      return;
+    }
+    if (!needs && !options.force) {
+      console.log(`Compaction not needed (${tombstones} tombstones, threshold is ${TOMBSTONE_THRESHOLD}).`);
+      console.log("Use --force to compact anyway.");
+      return;
+    }
+    console.log("Running compaction...");
+    const result = await compact(repoRoot);
+    console.log("\nCompaction complete:");
+    console.log(`  Archived: ${result.archived} lesson(s)`);
+    console.log(`  Tombstones removed: ${result.tombstonesRemoved}`);
+    console.log(`  Lessons remaining: ${result.lessonsRemaining}`);
+    await rebuildIndex(repoRoot);
+    console.log("  Index rebuilt.");
+  });
+}
+var MODEL_URI = "hf:ggml-org/embeddinggemma-300M-qat-q4_0-GGUF/embeddinggemma-300M-qat-Q4_0.gguf";
+var MODEL_FILENAME = "hf_ggml-org_embeddinggemma-300M-qat-Q4_0.gguf";
+var DEFAULT_MODEL_DIR = join(homedir(), ".node-llama-cpp", "models");
+function isModelAvailable() {
+  return existsSync(join(DEFAULT_MODEL_DIR, MODEL_FILENAME));
+}
+async function resolveModel(options = {}) {
+  const { cli = true } = options;
+  return resolveModelFile(MODEL_URI, { cli });
+}
+
+// src/embeddings/nomic.ts
+var embeddingContext = null;
+async function getEmbedding() {
+  if (embeddingContext) return embeddingContext;
+  const modelPath = await resolveModel({ cli: true });
+  const llama = await getLlama();
+  const model = await llama.loadModel({ modelPath });
+  embeddingContext = await model.createEmbeddingContext();
+  return embeddingContext;
+}
+async function embedText(text) {
+  const ctx = await getEmbedding();
+  const result = await ctx.getEmbeddingFor(text);
+  return Array.from(result.vector);
+}
+
+// src/search/vector.ts
+function cosineSimilarity(a, b) {
+  if (a.length !== b.length) {
+    throw new Error("Vectors must have same length");
+  }
+  let dotProduct = 0;
+  let normA = 0;
+  let normB = 0;
+  for (let i = 0; i < a.length; i++) {
+    dotProduct += a[i] * b[i];
+    normA += a[i] * a[i];
+    normB += b[i] * b[i];
+  }
+  const magnitude = Math.sqrt(normA) * Math.sqrt(normB);
+  if (magnitude === 0) return 0;
+  return dotProduct / magnitude;
+}
+var DEFAULT_LIMIT = 10;
+async function searchVector(repoRoot, query, options) {
+  const limit = options?.limit ?? DEFAULT_LIMIT;
+  const { lessons } = await readLessons(repoRoot);
+  if (lessons.length === 0) return [];
+  const queryVector = await embedText(query);
+  const scored = [];
+  for (const lesson of lessons) {
+    const lessonText = `${lesson.trigger} ${lesson.insight}`;
+    const hash = contentHash(lesson.trigger, lesson.insight);
+    let lessonVector = getCachedEmbedding(repoRoot, lesson.id, hash);
+    if (!lessonVector) {
+      lessonVector = await embedText(lessonText);
+      setCachedEmbedding(repoRoot, lesson.id, lessonVector, hash);
+    }
+    const score = cosineSimilarity(queryVector, lessonVector);
+    scored.push({ lesson, score });
+  }
+  scored.sort((a, b) => b.score - a.score);
+  return scored.slice(0, limit);
+}
+
+// src/search/ranking.ts
+var RECENCY_THRESHOLD_DAYS = 30;
+var HIGH_SEVERITY_BOOST = 1.5;
+var MEDIUM_SEVERITY_BOOST = 1;
+var LOW_SEVERITY_BOOST = 0.8;
+var RECENCY_BOOST = 1.2;
+var CONFIRMATION_BOOST = 1.3;
+function severityBoost(lesson) {
+  switch (lesson.severity) {
+    case "high":
+      return HIGH_SEVERITY_BOOST;
+    case "medium":
+      return MEDIUM_SEVERITY_BOOST;
+    case "low":
+      return LOW_SEVERITY_BOOST;
+    default:
+      return MEDIUM_SEVERITY_BOOST;
+  }
+}
+function recencyBoost(lesson) {
+  const created = new Date(lesson.created);
+  const now = /* @__PURE__ */ new Date();
+  const ageMs = now.getTime() - created.getTime();
+  const ageDays = Math.floor(ageMs / (1e3 * 60 * 60 * 24));
+  return ageDays <= RECENCY_THRESHOLD_DAYS ? RECENCY_BOOST : 1;
+}
+function confirmationBoost(lesson) {
+  return lesson.confirmed ? CONFIRMATION_BOOST : 1;
+}
+function calculateScore(lesson, vectorSimilarity) {
+  return vectorSimilarity * severityBoost(lesson) * recencyBoost(lesson) * confirmationBoost(lesson);
+}
+function rankLessons(lessons) {
+  return lessons.map((scored) => ({
+    ...scored,
+    finalScore: calculateScore(scored.lesson, scored.score)
+  })).sort((a, b) => (b.finalScore ?? 0) - (a.finalScore ?? 0));
+}
+
+// src/capture/quality.ts
+var DEFAULT_SIMILARITY_THRESHOLD = 0.8;
+async function isNovel(repoRoot, insight, options = {}) {
+  const threshold = options.threshold ?? DEFAULT_SIMILARITY_THRESHOLD;
+  await syncIfNeeded(repoRoot);
+  const words = insight.toLowerCase().replace(/[^a-z0-9\s]/g, "").split(/\s+/).filter((w) => w.length > 3).slice(0, 3);
+  if (words.length === 0) {
+    return { novel: true };
+  }
+  const searchQuery = words.join(" OR ");
+  const results = await searchKeyword(repoRoot, searchQuery, 10);
+  if (results.length === 0) {
+    return { novel: true };
+  }
+  const insightWords = new Set(insight.toLowerCase().split(/\s+/));
+  for (const lesson of results) {
+    const lessonWords = new Set(lesson.insight.toLowerCase().split(/\s+/));
+    const intersection = [...insightWords].filter((w) => lessonWords.has(w)).length;
+    const union = (/* @__PURE__ */ new Set([...insightWords, ...lessonWords])).size;
+    const similarity = union > 0 ? intersection / union : 0;
+    if (similarity >= threshold) {
+      return {
+        novel: false,
+        reason: `Found similar existing lesson: "${lesson.insight.slice(0, 50)}..."`,
+        existingId: lesson.id
+      };
+    }
+    if (lesson.insight.toLowerCase() === insight.toLowerCase()) {
+      return {
+        novel: false,
+        reason: `Exact duplicate found`,
+        existingId: lesson.id
+      };
+    }
+  }
+  return { novel: true };
+}
+var MIN_WORD_COUNT = 4;
+var VAGUE_PATTERNS = [
+  /\bwrite better\b/i,
+  /\bbe careful\b/i,
+  /\bremember to\b/i,
+  /\bmake sure\b/i,
+  /\btry to\b/i,
+  /\bdouble check\b/i
+];
+var GENERIC_IMPERATIVE_PATTERN = /^(always|never)\s+\w+(\s+\w+){0,2}$/i;
+function isSpecific(insight) {
+  const words = insight.trim().split(/\s+/).filter((w) => w.length > 0);
+  if (words.length < MIN_WORD_COUNT) {
+    return { specific: false, reason: "Insight is too short to be actionable" };
+  }
+  for (const pattern of VAGUE_PATTERNS) {
+    if (pattern.test(insight)) {
+      return { specific: false, reason: "Insight matches a vague pattern" };
+    }
+  }
+  if (GENERIC_IMPERATIVE_PATTERN.test(insight)) {
+    return { specific: false, reason: "Insight matches a vague pattern" };
+  }
+  return { specific: true };
+}
+var ACTION_PATTERNS = [
+  /\buse\s+.+\s+instead\s+of\b/i,
+  // "use X instead of Y"
+  /\bprefer\s+.+\s+(over|to)\b/i,
+  // "prefer X over Y" or "prefer X to Y"
+  /\balways\s+.+\s+when\b/i,
+  // "always X when Y"
+  /\bnever\s+.+\s+without\b/i,
+  // "never X without Y"
+  /\bavoid\s+(using\s+)?\w+/i,
+  // "avoid X" or "avoid using X"
+  /\bcheck\s+.+\s+before\b/i,
+  // "check X before Y"
+  /^(run|use|add|remove|install|update|configure|set|enable|disable)\s+/i
+  // Imperative commands at start
+];
+function isActionable(insight) {
+  for (const pattern of ACTION_PATTERNS) {
+    if (pattern.test(insight)) {
+      return { actionable: true };
+    }
+  }
+  return { actionable: false, reason: "Insight lacks clear action guidance" };
+}
+async function shouldPropose(repoRoot, insight) {
+  const specificResult = isSpecific(insight);
+  if (!specificResult.specific) {
+    return { shouldPropose: false, reason: specificResult.reason };
+  }
+  const actionableResult = isActionable(insight);
+  if (!actionableResult.actionable) {
+    return { shouldPropose: false, reason: actionableResult.reason };
+  }
+  const noveltyResult = await isNovel(repoRoot, insight);
+  if (!noveltyResult.novel) {
+    return { shouldPropose: false, reason: noveltyResult.reason };
+  }
+  return { shouldPropose: true };
+}
+
+// src/capture/triggers.ts
+var USER_CORRECTION_PATTERNS = [
+  /\bno\b[,.]?\s/i,
+  // "no, ..." or "no ..."
+  /\bwrong\b/i,
+  // "wrong"
+  /\bactually\b/i,
+  // "actually..."
   /\bnot that\b/i,
   // "not that"
   /\bi meant\b/i
@@ -548,39 +1127,364 @@ function detectTestFailure(testResult) {
   };
 }
 
-// src/capture/integration.ts
-async function detectAndPropose(repoRoot, input) {
-  const detected = runDetector(input);
-  if (!detected) {
-    return null;
-  }
-  const { trigger, source, proposedInsight } = detected;
-  const quality = await shouldPropose(repoRoot, proposedInsight);
-  if (!quality.shouldPropose) {
-    return null;
-  }
-  return { trigger, source, proposedInsight };
+// src/retrieval/session.ts
+var DEFAULT_LIMIT2 = 5;
+function isFullLesson(lesson) {
+  return lesson.type === "full" && lesson.severity !== void 0;
 }
-function runDetector(input) {
-  switch (input.type) {
-    case "user":
-      return detectUserCorrectionFlow(input.data);
-    case "self":
-      return detectSelfCorrectionFlow(input.data);
-    case "test":
-      return detectTestFailureFlow(input.data);
-  }
+async function loadSessionLessons(repoRoot, limit = DEFAULT_LIMIT2) {
+  const { lessons: allLessons } = await readLessons(repoRoot);
+  const highSeverityLessons = allLessons.filter(
+    (lesson) => isFullLesson(lesson) && lesson.severity === "high" && lesson.confirmed
+  );
+  highSeverityLessons.sort((a, b) => {
+    const dateA = new Date(a.created).getTime();
+    const dateB = new Date(b.created).getTime();
+    return dateB - dateA;
+  });
+  return highSeverityLessons.slice(0, limit);
 }
-function detectUserCorrectionFlow(data) {
-  const result = detectUserCorrection(data);
-  if (!result) {
-    return null;
+
+// src/retrieval/plan.ts
+var DEFAULT_LIMIT3 = 5;
+async function retrieveForPlan(repoRoot, planText, limit = DEFAULT_LIMIT3) {
+  const scored = await searchVector(repoRoot, planText, { limit: limit * 2 });
+  const ranked = rankLessons(scored);
+  const topLessons = ranked.slice(0, limit);
+  const message = formatLessonsCheck(topLessons);
+  return { lessons: topLessons, message };
+}
+function formatLessonsCheck(lessons) {
+  const header = "\u{1F4DA} Lessons Check\n" + "\u2500".repeat(40);
+  if (lessons.length === 0) {
+    return `${header}
+No relevant lessons found for this plan.`;
   }
-  return {
-    trigger: result.trigger,
-    source: "user_correction",
-    proposedInsight: result.correctionMessage
-  };
+  const lessonLines = lessons.map((l, i) => {
+    const bullet = `${i + 1}.`;
+    const insight = l.lesson.insight;
+    return `${bullet} ${insight}`;
+  });
+  return `${header}
+${lessonLines.join("\n")}`;
+}
+
+// src/index.ts
+var VERSION = "0.1.0";
+
+// src/cli/commands/download-model.ts
+function registerDownloadModelCommand(program2) {
+  program2.command("download-model").description("Download the embedding model for semantic search").option("--json", "Output as JSON").action(async (options) => {
+    const alreadyExisted = isModelAvailable();
+    if (alreadyExisted) {
+      const modelPath2 = join(homedir(), ".node-llama-cpp", "models", MODEL_FILENAME);
+      const size2 = statSync(modelPath2).size;
+      if (options.json) {
+        console.log(JSON.stringify({ success: true, path: modelPath2, size: size2, alreadyExisted: true }));
+      } else {
+        console.log("Model already exists.");
+        console.log(`Path: ${modelPath2}`);
+        console.log(`Size: ${formatBytes(size2)}`);
+      }
+      return;
+    }
+    if (!options.json) {
+      console.log("Downloading embedding model...");
+    }
+    const modelPath = await resolveModel({ cli: !options.json });
+    const size = statSync(modelPath).size;
+    if (options.json) {
+      console.log(JSON.stringify({ success: true, path: modelPath, size, alreadyExisted: false }));
+    } else {
+      console.log(`
+Model downloaded successfully!`);
+      console.log(`Path: ${modelPath}`);
+      console.log(`Size: ${formatBytes(size)}`);
+    }
+  });
+}
+var SHOW_JSON_INDENT = JSON_INDENT_SPACES;
+function formatLessonHuman(lesson) {
+  const lines = [];
+  lines.push(`ID: ${lesson.id}`);
+  lines.push(`Type: ${lesson.type}`);
+  lines.push(`Trigger: ${lesson.trigger}`);
+  lines.push(`Insight: ${lesson.insight}`);
+  if (lesson.evidence) {
+    lines.push(`Evidence: ${lesson.evidence}`);
+  }
+  if (lesson.severity) {
+    lines.push(`Severity: ${lesson.severity}`);
+  }
+  lines.push(`Tags: ${lesson.tags.length > 0 ? lesson.tags.join(", ") : "(none)"}`);
+  lines.push(`Source: ${lesson.source}`);
+  if (lesson.context) {
+    lines.push(`Context: ${lesson.context.tool} - ${lesson.context.intent}`);
+  }
+  lines.push(`Created: ${lesson.created}`);
+  lines.push(`Confirmed: ${lesson.confirmed}`);
+  if (lesson.supersedes.length > 0) {
+    lines.push(`Supersedes: ${lesson.supersedes.join(", ")}`);
+  }
+  if (lesson.related.length > 0) {
+    lines.push(`Related: ${lesson.related.join(", ")}`);
+  }
+  return lines.join("\n");
+}
+function registerShowCommand(program2) {
+  program2.command("show <id>").description("Show details of a specific lesson").option("--json", "Output as JSON").action(async (id, options) => {
+    const repoRoot = getRepoRoot();
+    const { lessons } = await readLessons(repoRoot);
+    const lesson = lessons.find((l) => l.id === id);
+    if (!lesson) {
+      const filePath = join(repoRoot, LESSONS_PATH);
+      let wasDeleted = false;
+      try {
+        const content = await readFile(filePath, "utf-8");
+        const lines = content.split("\n");
+        for (const line of lines) {
+          const trimmed = line.trim();
+          if (!trimmed) continue;
+          try {
+            const record = JSON.parse(trimmed);
+            if (record.id === id && record.deleted === true) {
+              wasDeleted = true;
+              break;
+            }
+          } catch {
+          }
+        }
+      } catch {
+      }
+      if (options.json) {
+        console.log(JSON.stringify({ error: wasDeleted ? `Lesson ${id} not found (deleted)` : `Lesson ${id} not found` }));
+      } else {
+        out.error(wasDeleted ? `Lesson ${id} not found (deleted)` : `Lesson ${id} not found`);
+      }
+      process.exit(1);
+    }
+    if (options.json) {
+      console.log(JSON.stringify(lesson, null, SHOW_JSON_INDENT));
+    } else {
+      console.log(formatLessonHuman(lesson));
+    }
+  });
+}
+var SHOW_JSON_INDENT2 = JSON_INDENT_SPACES;
+function registerUpdateCommand(program2) {
+  program2.command("update <id>").description("Update a lesson").option("--insight <text>", "Update insight").option("--trigger <text>", "Update trigger").option("--evidence <text>", "Update evidence").option("--severity <level>", "Update severity (low/medium/high)").option("--tags <tags>", "Update tags (comma-separated)").option("--confirmed <bool>", "Update confirmed status (true/false)").option("--json", "Output as JSON").action(async (id, options) => {
+    const repoRoot = getRepoRoot();
+    const hasUpdates = options.insight !== void 0 || options.trigger !== void 0 || options.evidence !== void 0 || options.severity !== void 0 || options.tags !== void 0 || options.confirmed !== void 0;
+    if (!hasUpdates) {
+      if (options.json) {
+        console.log(JSON.stringify({ error: "No fields to update (specify at least one: --insight, --tags, --severity, ...)" }));
+      } else {
+        out.error("No fields to update (specify at least one: --insight, --tags, --severity, ...)");
+      }
+      process.exit(1);
+    }
+    const { lessons } = await readLessons(repoRoot);
+    const lesson = lessons.find((l) => l.id === id);
+    if (!lesson) {
+      const filePath = join(repoRoot, LESSONS_PATH);
+      let wasDeleted = false;
+      try {
+        const content = await readFile(filePath, "utf-8");
+        const lines = content.split("\n");
+        for (const line of lines) {
+          const trimmed = line.trim();
+          if (!trimmed) continue;
+          try {
+            const record = JSON.parse(trimmed);
+            if (record.id === id && record.deleted === true) {
+              wasDeleted = true;
+              break;
+            }
+          } catch {
+          }
+        }
+      } catch {
+      }
+      if (options.json) {
+        console.log(JSON.stringify({ error: wasDeleted ? `Lesson ${id} is deleted` : `Lesson ${id} not found` }));
+      } else {
+        out.error(wasDeleted ? `Lesson ${id} is deleted` : `Lesson ${id} not found`);
+      }
+      process.exit(1);
+    }
+    if (options.severity !== void 0) {
+      const result = SeveritySchema.safeParse(options.severity);
+      if (!result.success) {
+        if (options.json) {
+          console.log(JSON.stringify({ error: `Invalid severity '${options.severity}' (must be: high, medium, low)` }));
+        } else {
+          out.error(`Invalid severity '${options.severity}' (must be: high, medium, low)`);
+        }
+        process.exit(1);
+      }
+    }
+    const updatedLesson = {
+      ...lesson,
+      ...options.insight !== void 0 && { insight: options.insight },
+      ...options.trigger !== void 0 && { trigger: options.trigger },
+      ...options.evidence !== void 0 && { evidence: options.evidence },
+      ...options.severity !== void 0 && { severity: options.severity },
+      ...options.tags !== void 0 && {
+        tags: [...new Set(
+          options.tags.split(",").map((t) => t.trim()).filter((t) => t.length > 0)
+        )]
+      },
+      ...options.confirmed !== void 0 && { confirmed: options.confirmed === "true" }
+    };
+    const validationResult = LessonSchema.safeParse(updatedLesson);
+    if (!validationResult.success) {
+      if (options.json) {
+        console.log(JSON.stringify({ error: `Schema validation failed: ${validationResult.error.message}` }));
+      } else {
+        out.error(`Schema validation failed: ${validationResult.error.message}`);
+      }
+      process.exit(1);
+    }
+    await appendLesson(repoRoot, updatedLesson);
+    await syncIfNeeded(repoRoot);
+    if (options.json) {
+      console.log(JSON.stringify(updatedLesson, null, SHOW_JSON_INDENT2));
+    } else {
+      out.success(`Updated lesson ${id}`);
+    }
+  });
+}
+async function wasLessonDeleted(repoRoot, id) {
+  const filePath = join(repoRoot, LESSONS_PATH);
+  try {
+    const content = await readFile(filePath, "utf-8");
+    const lines = content.split("\n");
+    for (const line of lines) {
+      const trimmed = line.trim();
+      if (!trimmed) continue;
+      try {
+        const record = JSON.parse(trimmed);
+        if (record.id === id && record.deleted === true) {
+          return true;
+        }
+      } catch {
+      }
+    }
+  } catch {
+  }
+  return false;
+}
+function registerDeleteCommand(program2) {
+  program2.command("delete <ids...>").description("Soft delete lessons (creates tombstone)").option("--json", "Output as JSON").action(async (ids, options) => {
+    const repoRoot = getRepoRoot();
+    const { lessons } = await readLessons(repoRoot);
+    const lessonMap = new Map(lessons.map((l) => [l.id, l]));
+    const deleted = [];
+    const warnings = [];
+    for (const id of ids) {
+      const lesson = lessonMap.get(id);
+      if (!lesson) {
+        const wasDeleted = await wasLessonDeleted(repoRoot, id);
+        warnings.push({ id, message: wasDeleted ? "already deleted" : "not found" });
+        continue;
+      }
+      const tombstone = {
+        ...lesson,
+        deleted: true,
+        deletedAt: (/* @__PURE__ */ new Date()).toISOString()
+      };
+      await appendLesson(repoRoot, tombstone);
+      deleted.push(id);
+    }
+    if (deleted.length > 0) {
+      await syncIfNeeded(repoRoot);
+    }
+    if (options.json) {
+      console.log(JSON.stringify({ deleted, warnings }));
+    } else {
+      if (deleted.length > 0) {
+        out.success(`Deleted ${deleted.length} lesson(s): ${deleted.join(", ")}`);
+      }
+      for (const warning of warnings) {
+        out.warn(`${warning.id}: ${warning.message}`);
+      }
+      if (deleted.length === 0 && warnings.length > 0) {
+        process.exit(1);
+      }
+    }
+  });
+}
+function registerLearnCommand(program2) {
+  program2.command("learn <insight>").description("Capture a new lesson").option("-t, --trigger <text>", "What triggered this lesson").option("--tags <tags>", "Comma-separated tags", "").option("-s, --severity <level>", "Lesson severity: high, medium, low").option("-y, --yes", "Skip confirmation").action(async function(insight, options) {
+    const repoRoot = getRepoRoot();
+    const { quiet } = getGlobalOpts(this);
+    let severity;
+    if (options.severity !== void 0) {
+      const result = SeveritySchema.safeParse(options.severity);
+      if (!result.success) {
+        out.error(`Invalid severity value: "${options.severity}". Valid values are: high, medium, low`);
+        process.exit(1);
+      }
+      severity = result.data;
+    }
+    const lessonType = severity !== void 0 ? "full" : "quick";
+    const lesson = {
+      id: generateId(insight),
+      type: lessonType,
+      trigger: options.trigger ?? "Manual capture",
+      insight,
+      tags: options.tags ? options.tags.split(",").map((t) => t.trim()) : [],
+      source: "manual",
+      context: {
+        tool: "cli",
+        intent: "manual learning"
+      },
+      created: (/* @__PURE__ */ new Date()).toISOString(),
+      confirmed: true,
+      // learn command is explicit confirmation
+      supersedes: [],
+      related: [],
+      ...severity !== void 0 && { severity }
+    };
+    await appendLesson(repoRoot, lesson);
+    out.success(`Learned: ${insight}`);
+    if (!quiet) {
+      console.log(`ID: ${chalk.dim(lesson.id)}`);
+    }
+  });
+}
+async function detectAndPropose(repoRoot, input) {
+  const detected = runDetector(input);
+  if (!detected) {
+    return null;
+  }
+  const { trigger, source, proposedInsight } = detected;
+  const quality = await shouldPropose(repoRoot, proposedInsight);
+  if (!quality.shouldPropose) {
+    return null;
+  }
+  return { trigger, source, proposedInsight };
+}
+function runDetector(input) {
+  switch (input.type) {
+    case "user":
+      return detectUserCorrectionFlow(input.data);
+    case "self":
+      return detectSelfCorrectionFlow(input.data);
+    case "test":
+      return detectTestFailureFlow(input.data);
+  }
+}
+function detectUserCorrectionFlow(data) {
+  const result = detectUserCorrection(data);
+  if (!result) {
+    return null;
+  }
+  return {
+    trigger: result.trigger,
+    source: "user_correction",
+    proposedInsight: result.correctionMessage
+  };
 }
 function detectSelfCorrectionFlow(data) {
   const result = detectSelfCorrection(data);
@@ -615,431 +1519,679 @@ async function parseInputFile(filePath) {
   return data;
 }
 
-// src/cli-utils.ts
-function formatBytes(bytes) {
-  if (bytes === 0) return "0 B";
-  if (bytes < 1024) return `${bytes} B`;
-  const kb = bytes / 1024;
-  if (kb < 1024) return `${kb.toFixed(1)} KB`;
-  const mb = kb / 1024;
-  return `${mb.toFixed(1)} MB`;
-}
-function parseLimit(value, name) {
-  const parsed = parseInt(value, 10);
-  if (Number.isNaN(parsed) || parsed <= 0) {
-    throw new Error(`Invalid ${name}: must be a positive integer`);
-  }
-  return parsed;
-}
-function getRepoRoot() {
-  return process.env["LEARNING_AGENT_ROOT"] ?? process.cwd();
-}
-join(homedir(), ".node-llama-cpp", "models");
-
-// src/index.ts
-var VERSION = "0.1.0";
-var ARCHIVE_DIR = ".claude/lessons/archive";
-var TOMBSTONE_THRESHOLD = 100;
-var ARCHIVE_AGE_DAYS = 90;
-var MS_PER_DAY = 1e3 * 60 * 60 * 24;
-var MONTH_INDEX_OFFSET = 1;
-var MONTH_PAD_LENGTH = 2;
-function getArchivePath(repoRoot, date) {
-  const year = date.getFullYear();
-  const month = String(date.getMonth() + MONTH_INDEX_OFFSET).padStart(MONTH_PAD_LENGTH, "0");
-  return join(repoRoot, ARCHIVE_DIR, `${year}-${month}.jsonl`);
-}
-async function parseRawJsonlLines(repoRoot) {
-  const filePath = join(repoRoot, LESSONS_PATH);
-  let content;
-  try {
-    content = await readFile(filePath, "utf-8");
-  } catch {
-    return [];
-  }
-  const results = [];
-  for (const line of content.split("\n")) {
-    const trimmed = line.trim();
-    if (!trimmed) continue;
-    try {
-      const parsed = JSON.parse(trimmed);
-      results.push({ line: trimmed, parsed });
-    } catch {
-      results.push({ line: trimmed, parsed: null });
-    }
-  }
-  return results;
-}
-async function countTombstones(repoRoot) {
-  const lines = await parseRawJsonlLines(repoRoot);
-  let count = 0;
-  for (const { parsed } of lines) {
-    if (parsed && parsed["deleted"] === true) {
-      count++;
-    }
-  }
-  return count;
-}
-async function needsCompaction(repoRoot) {
-  const count = await countTombstones(repoRoot);
-  return count >= TOMBSTONE_THRESHOLD;
-}
-async function rewriteWithoutTombstones(repoRoot) {
-  const filePath = join(repoRoot, LESSONS_PATH);
-  const tempPath = filePath + ".tmp";
-  const { lessons } = await readLessons(repoRoot);
-  const tombstoneCount = await countTombstones(repoRoot);
-  await mkdir(dirname(filePath), { recursive: true });
-  const lines = lessons.map((lesson) => JSON.stringify(lesson) + "\n");
-  await writeFile(tempPath, lines.join(""), "utf-8");
-  await rename(tempPath, filePath);
-  return tombstoneCount;
-}
-function shouldArchive(lesson, now) {
-  const created = new Date(lesson.created);
-  const ageMs = now.getTime() - created.getTime();
-  const ageDays = ageMs / MS_PER_DAY;
-  return ageDays > ARCHIVE_AGE_DAYS && (lesson.retrievalCount === void 0 || lesson.retrievalCount === 0);
-}
-async function archiveOldLessons(repoRoot) {
-  const { lessons } = await readLessons(repoRoot);
-  const now = /* @__PURE__ */ new Date();
-  const toArchive = [];
-  const toKeep = [];
-  for (const lesson of lessons) {
-    if (shouldArchive(lesson, now)) {
-      toArchive.push(lesson);
-    } else {
-      toKeep.push(lesson);
+// src/cli/commands/detect.ts
+function registerDetectCommand(program2) {
+  program2.command("detect").description("Detect learning triggers from input").requiredOption("--input <file>", "Path to JSON input file").option("--save", "Save proposed lesson (requires --yes)").option("-y, --yes", "Confirm save (required with --save)").option("--json", "Output result as JSON").action(
+    async (options) => {
+      const repoRoot = getRepoRoot();
+      if (options.save && !options.yes) {
+        if (options.json) {
+          console.log(JSON.stringify({ error: "--save requires --yes flag for confirmation" }));
+        } else {
+          out.error("--save requires --yes flag for confirmation");
+          console.log("Use: detect --input <file> --save --yes");
+        }
+        process.exit(1);
+      }
+      const input = await parseInputFile(options.input);
+      const result = await detectAndPropose(repoRoot, input);
+      if (!result) {
+        if (options.json) {
+          console.log(JSON.stringify({ detected: false }));
+        } else {
+          console.log("No learning trigger detected.");
+        }
+        return;
+      }
+      if (options.json) {
+        console.log(JSON.stringify({ detected: true, ...result }));
+        return;
+      }
+      console.log("Learning trigger detected!");
+      console.log(`  Trigger: ${result.trigger}`);
+      console.log(`  Source: ${result.source}`);
+      console.log(`  Proposed: ${result.proposedInsight}`);
+      if (options.save && options.yes) {
+        const lesson = {
+          id: generateId(result.proposedInsight),
+          type: "quick",
+          trigger: result.trigger,
+          insight: result.proposedInsight,
+          tags: [],
+          source: result.source,
+          context: { tool: "detect", intent: "auto-capture" },
+          created: (/* @__PURE__ */ new Date()).toISOString(),
+          confirmed: true,
+          // --yes confirms the lesson
+          supersedes: [],
+          related: []
+        };
+        await appendLesson(repoRoot, lesson);
+        console.log(`
+Saved as lesson: ${lesson.id}`);
+      }
     }
-  }
-  if (toArchive.length === 0) {
-    return 0;
-  }
-  const archiveGroups = /* @__PURE__ */ new Map();
-  for (const lesson of toArchive) {
-    const created = new Date(lesson.created);
-    const archivePath = getArchivePath(repoRoot, created);
-    const group = archiveGroups.get(archivePath) ?? [];
-    group.push(lesson);
-    archiveGroups.set(archivePath, group);
-  }
-  const archiveDir = join(repoRoot, ARCHIVE_DIR);
-  await mkdir(archiveDir, { recursive: true });
-  for (const [archivePath, archiveLessons] of archiveGroups) {
-    const lines2 = archiveLessons.map((l) => JSON.stringify(l) + "\n").join("");
-    await appendFile(archivePath, lines2, "utf-8");
-  }
-  const filePath = join(repoRoot, LESSONS_PATH);
-  const tempPath = filePath + ".tmp";
-  await mkdir(dirname(filePath), { recursive: true });
-  const lines = toKeep.map((lesson) => JSON.stringify(lesson) + "\n");
-  await writeFile(tempPath, lines.join(""), "utf-8");
-  await rename(tempPath, filePath);
-  return toArchive.length;
-}
-async function compact(repoRoot) {
-  const tombstonesBefore = await countTombstones(repoRoot);
-  const archived = await archiveOldLessons(repoRoot);
-  const tombstonesAfterArchive = await countTombstones(repoRoot);
-  await rewriteWithoutTombstones(repoRoot);
-  const tombstonesRemoved = archived > 0 ? tombstonesBefore : tombstonesAfterArchive;
-  const { lessons } = await readLessons(repoRoot);
-  return {
-    archived,
-    tombstonesRemoved,
-    lessonsRemaining: lessons.length
-  };
+  );
 }
 
-// src/cli.ts
-var out = {
-  success: (msg) => console.log(chalk.green("[ok]"), msg),
-  error: (msg) => console.error(chalk.red("[error]"), msg),
-  info: (msg) => console.log(chalk.blue("[info]"), msg),
-  warn: (msg) => console.log(chalk.yellow("[warn]"), msg)
-};
-function getGlobalOpts(cmd) {
-  const opts = cmd.optsWithGlobals();
+// src/cli/commands/capture.ts
+function createLessonFromFlags(trigger, insight, confirmed) {
   return {
-    verbose: opts.verbose ?? false,
-    quiet: opts.quiet ?? false
-  };
-}
-var DEFAULT_SEARCH_LIMIT = "10";
-var DEFAULT_LIST_LIMIT = "20";
-var program = new Command();
-program.option("-v, --verbose", "Show detailed output").option("-q, --quiet", "Suppress non-essential output");
-program.name("learning-agent").description("Repository-scoped learning system for Claude Code").version(VERSION);
-program.command("learn <insight>").description("Capture a new lesson").option("-t, --trigger <text>", "What triggered this lesson").option("--tags <tags>", "Comma-separated tags", "").option("-y, --yes", "Skip confirmation").action(async function(insight, options) {
-  const repoRoot = getRepoRoot();
-  const { quiet } = getGlobalOpts(this);
-  const lesson = {
     id: generateId(insight),
     type: "quick",
-    trigger: options.trigger ?? "Manual capture",
+    trigger,
     insight,
-    tags: options.tags ? options.tags.split(",").map((t) => t.trim()) : [],
+    tags: [],
     source: "manual",
-    context: {
-      tool: "cli",
-      intent: "manual learning"
-    },
+    context: { tool: "capture", intent: "manual capture" },
     created: (/* @__PURE__ */ new Date()).toISOString(),
-    confirmed: options.yes ?? false,
+    confirmed,
     supersedes: [],
     related: []
   };
-  await appendLesson(repoRoot, lesson);
-  out.success(`Learned: ${insight}`);
-  if (!quiet) {
-    console.log(`ID: ${chalk.dim(lesson.id)}`);
-  }
-});
-program.command("search <query>").description("Search lessons by keyword").option("-n, --limit <number>", "Maximum results", DEFAULT_SEARCH_LIMIT).action(async function(query, options) {
-  const repoRoot = getRepoRoot();
-  const limit = parseLimit(options.limit, "limit");
-  const { verbose, quiet } = getGlobalOpts(this);
-  await syncIfNeeded(repoRoot);
-  const results = await searchKeyword(repoRoot, query, limit);
-  if (results.length === 0) {
-    console.log('No lessons match your search. Try a different query or use "list" to see all lessons.');
-    return;
-  }
-  if (!quiet) {
-    out.info(`Found ${results.length} lesson(s):
-`);
-  }
-  for (const lesson of results) {
-    console.log(`[${chalk.cyan(lesson.id)}] ${lesson.insight}`);
-    console.log(`  Trigger: ${lesson.trigger}`);
-    if (verbose && lesson.context) {
-      console.log(`  Context: ${lesson.context.tool} - ${lesson.context.intent}`);
-      console.log(`  Created: ${lesson.created}`);
+}
+function outputCaptureJson(lesson, saved) {
+  console.log(JSON.stringify({
+    id: lesson.id,
+    trigger: lesson.trigger,
+    insight: lesson.insight,
+    type: lesson.type,
+    saved
+  }));
+}
+function outputCapturePreview(lesson) {
+  console.log("Lesson captured:");
+  console.log(`  ID: ${lesson.id}`);
+  console.log(`  Trigger: ${lesson.trigger}`);
+  console.log(`  Insight: ${lesson.insight}`);
+  console.log(`  Type: ${lesson.type}`);
+  console.log(`  Tags: ${lesson.tags.length > 0 ? lesson.tags.join(", ") : "(none)"}`);
+  console.log("\nSave this lesson? [y/n]");
+}
+function createLessonFromInputFile(result, confirmed) {
+  return {
+    id: generateId(result.proposedInsight),
+    type: "quick",
+    trigger: result.trigger,
+    insight: result.proposedInsight,
+    tags: [],
+    source: result.source,
+    context: { tool: "capture", intent: "auto-capture" },
+    created: (/* @__PURE__ */ new Date()).toISOString(),
+    confirmed,
+    supersedes: [],
+    related: []
+  };
+}
+function registerCaptureCommand(program2) {
+  program2.command("capture").description("Capture a lesson from trigger/insight or input file").option("-t, --trigger <text>", "What triggered this lesson").option("-i, --insight <text>", "The insight or lesson learned").option("--input <file>", "Path to JSON input file (alternative to trigger/insight)").option("--json", "Output result as JSON").option("-y, --yes", "Skip confirmation and save immediately").action(async function(options) {
+    const repoRoot = getRepoRoot();
+    const { verbose } = getGlobalOpts(this);
+    let lesson;
+    if (options.input) {
+      const input = await parseInputFile(options.input);
+      const result = await detectAndPropose(repoRoot, input);
+      if (!result) {
+        options.json ? console.log(JSON.stringify({ detected: false, saved: false })) : console.log("No learning trigger detected.");
+        return;
+      }
+      lesson = createLessonFromInputFile(result, options.yes ?? false);
+    } else if (options.trigger && options.insight) {
+      lesson = createLessonFromFlags(options.trigger, options.insight, options.yes ?? false);
+    } else {
+      const msg = "Provide either --trigger and --insight, or --input file.";
+      options.json ? console.log(JSON.stringify({ error: msg, saved: false })) : out.error(msg);
+      process.exit(1);
     }
-    if (lesson.tags.length > 0) {
-      console.log(`  Tags: ${lesson.tags.join(", ")}`);
+    if (!options.yes && !process.stdin.isTTY) {
+      if (options.json) {
+        console.log(JSON.stringify({ error: "--yes required in non-interactive mode", saved: false }));
+      } else {
+        out.error("--yes required in non-interactive mode");
+        console.log('Use: capture --trigger "..." --insight "..." --yes');
+      }
+      process.exit(1);
     }
-    console.log();
+    if (options.json) {
+      if (options.yes) await appendLesson(repoRoot, lesson);
+      outputCaptureJson(lesson, options.yes ?? false);
+    } else if (options.yes) {
+      await appendLesson(repoRoot, lesson);
+      out.success(`Lesson saved: ${lesson.id}`);
+      if (verbose) console.log(`  Type: ${lesson.type} | Trigger: ${lesson.trigger}`);
+    } else {
+      outputCapturePreview(lesson);
+    }
+  });
+}
+var LEARNING_AGENT_SECTION_HEADER = "## Learning Agent Integration";
+var HOOK_FILE_MODE = 493;
+var LEARNING_AGENT_HOOK_BLOCK = `
+# Learning Agent pre-commit hook (appended)
+npx lna hooks run pre-commit
+`;
+var AGENTS_MD_TEMPLATE = `
+## Learning Agent Integration
+
+This project uses learning-agent for session memory.
+
+### \u26A0\uFE0F IMPORTANT: Never Edit JSONL Directly
+
+**DO NOT** manually edit \`.claude/lessons/index.jsonl\`.
+
+Always use CLI commands:
+
+\`\`\`bash
+npx lna learn "insight" --severity high    # Create lesson
+npx lna update <id> --insight "new text"   # Update lesson
+npx lna delete <id>                        # Delete lesson
+npx lna list                               # List all lessons
+\`\`\`
+
+Manual edits will:
+- **Break SQLite sync** - Index becomes stale, search fails
+- **Bypass schema validation** - Invalid data corrupts the database
+- **Cause silent failures** - Lessons won't load at session start
+
+### Retrieval Points
+
+- **Session start**: High-severity lessons loaded automatically
+- **Plan-time**: BEFORE implementing a plan, run check-plan to retrieve relevant lessons
+
+### Plan-Time Retrieval (Explicit Step)
+
+**BEFORE implementing any plan**, run:
+
+\`\`\`bash
+npx lna check-plan --plan "your plan description" --json
+\`\`\`
+
+Display results as a **Lessons Check** section after your plan:
+
+\`\`\`
+## Lessons Check
+1. [insight from lesson 1] (relevance: 0.85)
+2. [insight from lesson 2] (relevance: 0.72)
+\`\`\`
+
+Consider each lesson while implementing.
+
+### Proposing Lessons
+
+Propose when: user correction, self-correction, test failure fix, or manual request.
+
+**Quality gate (ALL must pass):**
+
+- Novel (not already stored)
+- Specific (clear guidance)
+- Actionable (obvious what to do)
+
+**Confirmation format:**
+
+\`\`\`
+Learned: [insight]. Save? [y/n]
+\`\`\`
+
+### Session-End Protocol
+
+Before closing a session, reflect on lessons learned:
+
+1. **Review**: What mistakes or corrections happened?
+2. **Quality gate**: Is it novel, specific, actionable?
+3. **Propose**: "Learned: [insight]. Save? [y/n]"
+4. **Capture**: \`npx lna capture --trigger "..." --insight "..." --yes\`
+
+### CLI Commands
+
+\`\`\`bash
+npx lna load-session --json  # Session start
+npx lna check-plan --plan "..." --json  # Before implementing
+npx lna capture --trigger "..." --insight "..." --yes
+\`\`\`
+
+See [AGENTS.md](https://github.com/Nathandela/learning_agent/blob/main/AGENTS.md) for full documentation.
+`;
+function hasLearningAgentSection(content) {
+  return content.includes(LEARNING_AGENT_SECTION_HEADER);
+}
+async function createLessonsDirectory(repoRoot) {
+  const lessonsDir = dirname(join(repoRoot, LESSONS_PATH));
+  await mkdir(lessonsDir, { recursive: true });
+}
+async function createIndexFile(repoRoot) {
+  const indexPath = join(repoRoot, LESSONS_PATH);
+  if (!existsSync(indexPath)) {
+    await writeFile(indexPath, "", "utf-8");
   }
-});
-program.command("list").description("List all lessons").option("-n, --limit <number>", "Maximum results", DEFAULT_LIST_LIMIT).action(async function(options) {
-  const repoRoot = getRepoRoot();
-  const limit = parseLimit(options.limit, "limit");
-  const { verbose, quiet } = getGlobalOpts(this);
-  const { lessons, skippedCount } = await readLessons(repoRoot);
-  if (lessons.length === 0) {
-    console.log('No lessons found. Get started with: learn "Your first lesson"');
-    if (skippedCount > 0) {
-      out.warn(`${skippedCount} corrupted lesson(s) skipped.`);
+}
+async function updateAgentsMd(repoRoot) {
+  const agentsPath = join(repoRoot, "AGENTS.md");
+  let content = "";
+  let existed = false;
+  if (existsSync(agentsPath)) {
+    content = await readFile(agentsPath, "utf-8");
+    existed = true;
+    if (hasLearningAgentSection(content)) {
+      return false;
     }
-    return;
   }
-  const toShow = lessons.slice(0, limit);
-  if (!quiet) {
-    out.info(`Showing ${toShow.length} of ${lessons.length} lesson(s):
-`);
+  const newContent = existed ? content.trimEnd() + "\n" + AGENTS_MD_TEMPLATE : AGENTS_MD_TEMPLATE.trim() + "\n";
+  await writeFile(agentsPath, newContent, "utf-8");
+  return true;
+}
+function hasLearningAgentHook(content) {
+  return content.includes(HOOK_MARKER);
+}
+async function getGitHooksDir(repoRoot) {
+  const gitDir = join(repoRoot, ".git");
+  if (!existsSync(gitDir)) {
+    return null;
   }
-  for (const lesson of toShow) {
-    console.log(`[${chalk.cyan(lesson.id)}] ${lesson.insight}`);
-    if (verbose) {
-      console.log(`  Type: ${lesson.type} | Source: ${lesson.source}`);
-      console.log(`  Created: ${lesson.created}`);
-      if (lesson.context) {
-        console.log(`  Context: ${lesson.context.tool} - ${lesson.context.intent}`);
+  const configPath = join(gitDir, "config");
+  if (existsSync(configPath)) {
+    const config = await readFile(configPath, "utf-8");
+    const match = /hooksPath\s*=\s*(.+)$/m.exec(config);
+    if (match?.[1]) {
+      const hooksPath = match[1].trim();
+      return hooksPath.startsWith("/") ? hooksPath : join(repoRoot, hooksPath);
+    }
+  }
+  const defaultHooksDir = join(gitDir, "hooks");
+  return existsSync(defaultHooksDir) ? defaultHooksDir : null;
+}
+function findFirstTopLevelExitLine(lines) {
+  let insideFunction = 0;
+  let heredocDelimiter = null;
+  for (let i = 0; i < lines.length; i++) {
+    const line = lines[i] ?? "";
+    const trimmed = line.trim();
+    if (heredocDelimiter !== null) {
+      if (trimmed === heredocDelimiter) {
+        heredocDelimiter = null;
       }
-    } else {
-      console.log(`  Type: ${lesson.type} | Source: ${lesson.source}`);
+      continue;
     }
-    if (lesson.tags.length > 0) {
-      console.log(`  Tags: ${lesson.tags.join(", ")}`);
+    const heredocMatch = /<<-?\s*['"]?(\w+)['"]?/.exec(line);
+    if (heredocMatch?.[1]) {
+      heredocDelimiter = heredocMatch[1];
+      continue;
+    }
+    for (const char of line) {
+      if (char === "{") insideFunction++;
+      if (char === "}") insideFunction = Math.max(0, insideFunction - 1);
+    }
+    if (insideFunction > 0) {
+      continue;
+    }
+    if (/^\s*exit\s+(\d+|\$\w+|\$\?)\s*$/.test(trimmed)) {
+      return i;
     }
-    console.log();
   }
-  if (skippedCount > 0) {
-    out.warn(`${skippedCount} corrupted lesson(s) skipped.`);
+  return -1;
+}
+async function installPreCommitHook(repoRoot) {
+  const gitHooksDir = await getGitHooksDir(repoRoot);
+  if (!gitHooksDir) {
+    return false;
   }
-});
-program.command("rebuild").description("Rebuild SQLite index from JSONL").option("-f, --force", "Force rebuild even if unchanged").action(async (options) => {
-  const repoRoot = getRepoRoot();
-  if (options.force) {
-    console.log("Forcing index rebuild...");
-    await rebuildIndex(repoRoot);
-    console.log("Index rebuilt.");
-  } else {
-    const rebuilt = await syncIfNeeded(repoRoot);
-    if (rebuilt) {
-      console.log("Index rebuilt (JSONL changed).");
+  await mkdir(gitHooksDir, { recursive: true });
+  const hookPath = join(gitHooksDir, "pre-commit");
+  if (existsSync(hookPath)) {
+    const content = await readFile(hookPath, "utf-8");
+    if (hasLearningAgentHook(content)) {
+      return false;
+    }
+    const lines = content.split("\n");
+    const exitLineIndex = findFirstTopLevelExitLine(lines);
+    let newContent;
+    if (exitLineIndex === -1) {
+      newContent = content.trimEnd() + "\n" + LEARNING_AGENT_HOOK_BLOCK;
     } else {
-      console.log("Index is up to date.");
+      const before = lines.slice(0, exitLineIndex);
+      const after = lines.slice(exitLineIndex);
+      newContent = before.join("\n") + LEARNING_AGENT_HOOK_BLOCK + after.join("\n");
     }
+    await writeFile(hookPath, newContent, "utf-8");
+    chmodSync(hookPath, HOOK_FILE_MODE);
+    return true;
   }
-});
-program.command("detect").description("Detect learning triggers from input").requiredOption("--input <file>", "Path to JSON input file").option("--save", "Automatically save proposed lesson").option("--json", "Output result as JSON").action(
-  async (options) => {
+  await writeFile(hookPath, PRE_COMMIT_HOOK_TEMPLATE, "utf-8");
+  chmodSync(hookPath, HOOK_FILE_MODE);
+  return true;
+}
+function registerInitCommand(program2) {
+  program2.command("init").description("Initialize learning-agent in this repository").option("--skip-agents", "Skip AGENTS.md modification").option("--skip-hooks", "Skip git hooks installation").option("--skip-claude", "Skip Claude Code hooks installation").option("--json", "Output result as JSON").action(async function(options) {
     const repoRoot = getRepoRoot();
-    const input = await parseInputFile(options.input);
-    const result = await detectAndPropose(repoRoot, input);
-    if (!result) {
+    const { quiet } = getGlobalOpts(this);
+    await createLessonsDirectory(repoRoot);
+    await createIndexFile(repoRoot);
+    const lessonsDir = dirname(join(repoRoot, LESSONS_PATH));
+    let agentsMdUpdated = false;
+    if (!options.skipAgents) {
+      agentsMdUpdated = await updateAgentsMd(repoRoot);
+    }
+    let hooksInstalled = false;
+    if (!options.skipHooks) {
+      hooksInstalled = await installPreCommitHook(repoRoot);
+    }
+    let claudeHooksInstalled = false;
+    let claudeHooksError = null;
+    if (!options.skipClaude) {
+      try {
+        const settingsPath = getClaudeSettingsPath(false);
+        const settings = await readClaudeSettings(settingsPath);
+        if (!hasClaudeHook(settings)) {
+          addLearningAgentHook(settings);
+          await writeClaudeSettings(settingsPath, settings);
+          claudeHooksInstalled = true;
+        }
+      } catch (err) {
+        claudeHooksError = err instanceof Error ? err.message : "Unknown error";
+      }
+    }
+    if (options.json) {
+      console.log(JSON.stringify({
+        initialized: true,
+        lessonsDir,
+        agentsMd: agentsMdUpdated,
+        hooks: hooksInstalled,
+        claudeHooks: claudeHooksInstalled
+      }));
+    } else if (!quiet) {
+      out.success("Learning agent initialized");
+      console.log(`  Lessons directory: ${lessonsDir}`);
+      if (agentsMdUpdated) {
+        console.log("  AGENTS.md: Updated with Learning Agent section");
+      } else if (options.skipAgents) {
+        console.log("  AGENTS.md: Skipped (--skip-agents)");
+      } else {
+        console.log("  AGENTS.md: Already has Learning Agent section");
+      }
+      if (hooksInstalled) {
+        console.log("  Git hooks: pre-commit hook installed");
+      } else if (options.skipHooks) {
+        console.log("  Git hooks: Skipped (--skip-hooks)");
+      } else {
+        console.log("  Git hooks: Already installed or not a git repo");
+      }
+      if (claudeHooksInstalled) {
+        console.log("  Claude Code hooks: Installed to .claude/settings.json");
+      } else if (options.skipClaude) {
+        console.log("  Claude Code hooks: Skipped (--skip-claude)");
+      } else if (claudeHooksError) {
+        console.log(`  Claude Code hooks: Error - ${claudeHooksError}`);
+      } else {
+        console.log("  Claude Code hooks: Already installed");
+      }
+    }
+  });
+}
+
+// src/cli/commands/hooks.ts
+function registerHooksCommand(program2) {
+  const hooksCommand = program2.command("hooks").description("Git hooks management");
+  hooksCommand.command("run <hook>").description("Run a hook script (called by git hooks)").option("--json", "Output as JSON").action((hook, options) => {
+    if (hook === "pre-commit") {
+      if (options.json) {
+        console.log(JSON.stringify({ hook: "pre-commit", message: PRE_COMMIT_MESSAGE }));
+      } else {
+        console.log(PRE_COMMIT_MESSAGE);
+      }
+    } else {
+      if (options.json) {
+        console.log(JSON.stringify({ error: `Unknown hook: ${hook}` }));
+      } else {
+        out.error(`Unknown hook: ${hook}`);
+      }
+      process.exit(1);
+    }
+  });
+}
+function registerSetupCommand(program2) {
+  const setupCommand = program2.command("setup").description("Setup integrations");
+  setupCommand.command("claude").description("Install Claude Code SessionStart hooks").option("--global", "Install to global ~/.claude/ instead of project").option("--uninstall", "Remove learning-agent hooks").option("--dry-run", "Show what would change without writing").option("--json", "Output as JSON").action(async (options) => {
+    const settingsPath = getClaudeSettingsPath(options.global ?? false);
+    const displayPath = options.global ? "~/.claude/settings.json" : ".claude/settings.json";
+    let settings;
+    try {
+      settings = await readClaudeSettings(settingsPath);
+    } catch {
       if (options.json) {
-        console.log(JSON.stringify({ detected: false }));
+        console.log(JSON.stringify({ error: "Failed to parse settings file" }));
+      } else {
+        out.error("Failed to parse settings file. Check if JSON is valid.");
+      }
+      process.exit(1);
+    }
+    const alreadyInstalled = hasClaudeHook(settings);
+    if (options.uninstall) {
+      if (options.dryRun) {
+        if (options.json) {
+          console.log(JSON.stringify({ dryRun: true, wouldRemove: alreadyInstalled, location: displayPath }));
+        } else {
+          if (alreadyInstalled) {
+            console.log(`Would remove learning-agent hooks from ${displayPath}`);
+          } else {
+            console.log("No learning-agent hooks to remove");
+          }
+        }
+        return;
+      }
+      const removed = removeLearningAgentHook(settings);
+      if (removed) {
+        await writeClaudeSettings(settingsPath, settings);
+        if (options.json) {
+          console.log(JSON.stringify({ installed: false, location: displayPath, action: "removed" }));
+        } else {
+          out.success("Learning agent hooks removed");
+          console.log(`  Location: ${displayPath}`);
+        }
       } else {
-        console.log("No learning trigger detected.");
+        if (options.json) {
+          console.log(JSON.stringify({ installed: false, location: displayPath, action: "unchanged" }));
+        } else {
+          out.info("No learning agent hooks to remove");
+          if (options.global) {
+            console.log("  Hint: Try without --global to check project settings.");
+          } else {
+            console.log("  Hint: Try with --global flag to check global settings.");
+          }
+        }
       }
       return;
     }
-    if (options.json) {
-      console.log(JSON.stringify({ detected: true, ...result }));
+    if (options.dryRun) {
+      if (options.json) {
+        console.log(JSON.stringify({ dryRun: true, wouldInstall: !alreadyInstalled, location: displayPath }));
+      } else {
+        if (alreadyInstalled) {
+          console.log("Learning agent hooks already installed");
+        } else {
+          console.log(`Would install learning-agent hooks to ${displayPath}`);
+        }
+      }
       return;
     }
-    console.log("Learning trigger detected!");
-    console.log(`  Trigger: ${result.trigger}`);
-    console.log(`  Source: ${result.source}`);
-    console.log(`  Proposed: ${result.proposedInsight}`);
-    if (options.save) {
-      const lesson = {
-        id: generateId(result.proposedInsight),
-        type: "quick",
-        trigger: result.trigger,
-        insight: result.proposedInsight,
-        tags: [],
-        source: result.source,
-        context: { tool: "detect", intent: "auto-capture" },
-        created: (/* @__PURE__ */ new Date()).toISOString(),
-        confirmed: false,
-        supersedes: [],
-        related: []
-      };
-      await appendLesson(repoRoot, lesson);
-      console.log(`
-Saved as lesson: ${lesson.id}`);
+    if (alreadyInstalled) {
+      if (options.json) {
+        console.log(JSON.stringify({
+          installed: true,
+          location: displayPath,
+          hooks: ["SessionStart"],
+          action: "unchanged"
+        }));
+      } else {
+        out.info("Learning agent hooks already installed");
+        console.log(`  Location: ${displayPath}`);
+      }
+      return;
     }
-  }
-);
-program.command("compact").description("Compact lessons: archive old lessons and remove tombstones").option("-f, --force", "Run compaction even if below threshold").option("--dry-run", "Show what would be done without making changes").action(async (options) => {
-  const repoRoot = getRepoRoot();
-  const tombstones = await countTombstones(repoRoot);
-  const needs = await needsCompaction(repoRoot);
-  if (options.dryRun) {
-    console.log("Dry run - no changes will be made.\n");
-    console.log(`Tombstones found: ${tombstones}`);
-    console.log(`Compaction needed: ${needs ? "yes" : "no"}`);
-    return;
-  }
-  if (!needs && !options.force) {
-    console.log(`Compaction not needed (${tombstones} tombstones, threshold is ${TOMBSTONE_THRESHOLD}).`);
-    console.log("Use --force to compact anyway.");
-    return;
-  }
-  console.log("Running compaction...");
-  const result = await compact(repoRoot);
-  console.log("\nCompaction complete:");
-  console.log(`  Archived: ${result.archived} lesson(s)`);
-  console.log(`  Tombstones removed: ${result.tombstonesRemoved}`);
-  console.log(`  Lessons remaining: ${result.lessonsRemaining}`);
-  await rebuildIndex(repoRoot);
-  console.log("  Index rebuilt.");
-});
-program.command("export").description("Export lessons as JSON to stdout").option("--since <date>", "Only include lessons created after this date (ISO8601)").option("--tags <tags>", "Filter by tags (comma-separated, OR logic)").action(async (options) => {
-  const repoRoot = getRepoRoot();
-  const { lessons } = await readLessons(repoRoot);
-  let filtered = lessons;
-  if (options.since) {
-    const sinceDate = new Date(options.since);
-    if (Number.isNaN(sinceDate.getTime())) {
-      console.error(`Invalid date format: ${options.since}. Use ISO8601 format (e.g., 2024-01-15).`);
-      process.exit(1);
+    const fileExists = existsSync(settingsPath);
+    addLearningAgentHook(settings);
+    await writeClaudeSettings(settingsPath, settings);
+    if (options.json) {
+      console.log(JSON.stringify({
+        installed: true,
+        location: displayPath,
+        hooks: ["SessionStart"],
+        action: fileExists ? "updated" : "created"
+      }));
+    } else {
+      out.success(options.global ? "Claude Code hooks installed (global)" : "Claude Code hooks installed (project-level)");
+      console.log(`  Location: ${displayPath}`);
+      console.log("  Hook: SessionStart (startup|resume|compact)");
+      console.log("");
+      console.log("Lessons will be loaded automatically at session start.");
+      if (!options.global) {
+        console.log("");
+        console.log("Note: Project hooks override global hooks.");
+      }
     }
-    filtered = filtered.filter((lesson) => new Date(lesson.created) >= sinceDate);
+  });
+}
+
+// src/cli/commands/load-session.ts
+function formatSource(source) {
+  return source.replace(/_/g, " ");
+}
+function outputSessionLessonsHuman(lessons, quiet) {
+  console.log("## Lessons from Past Sessions\n");
+  if (!quiet) {
+    console.log("These lessons were captured from previous corrections and should inform your work:\n");
   }
-  if (options.tags) {
-    const filterTags = options.tags.split(",").map((t) => t.trim());
-    filtered = filtered.filter((lesson) => lesson.tags.some((tag) => filterTags.includes(tag)));
+  for (let i = 0; i < lessons.length; i++) {
+    const lesson = lessons[i];
+    const tags = lesson.tags.length > 0 ? ` (${lesson.tags.join(", ")})` : "";
+    console.log(`${i + 1}. **${lesson.insight}**${tags}`);
+    console.log(`   Learned: ${lesson.created.slice(0, ISO_DATE_PREFIX_LENGTH)} via ${formatSource(lesson.source)}`);
+    console.log();
   }
-  console.log(JSON.stringify(filtered, null, 2));
-});
-program.command("import <file>").description("Import lessons from a JSONL file").action(async (file) => {
-  const repoRoot = getRepoRoot();
-  let content;
-  try {
-    const { readFile: readFile4 } = await import('fs/promises');
-    content = await readFile4(file, "utf-8");
-  } catch (err) {
-    const code = err.code;
-    if (code === "ENOENT") {
-      console.error(`Error: File not found: ${file}`);
-    } else {
-      console.error(`Error reading file: ${err.message}`);
-    }
-    process.exit(1);
+  if (!quiet) {
+    console.log("Consider these lessons when planning and implementing tasks.");
   }
-  const { lessons: existingLessons } = await readLessons(repoRoot);
-  const existingIds = new Set(existingLessons.map((l) => l.id));
-  const lines = content.split("\n");
-  let imported = 0;
-  let skipped = 0;
-  let invalid = 0;
-  for (const line of lines) {
-    const trimmed = line.trim();
-    if (!trimmed) continue;
-    let parsed;
-    try {
-      parsed = JSON.parse(trimmed);
-    } catch {
-      invalid++;
-      continue;
+}
+function registerLoadSessionCommand(program2) {
+  program2.command("load-session").description("Load high-severity lessons for session context").option("--json", "Output as JSON").action(async function(options) {
+    const repoRoot = getRepoRoot();
+    const { quiet } = getGlobalOpts(this);
+    const lessons = await loadSessionLessons(repoRoot);
+    if (options.json) {
+      console.log(JSON.stringify({ lessons, count: lessons.length }));
+      return;
     }
-    const result = LessonSchema.safeParse(parsed);
-    if (!result.success) {
-      invalid++;
-      continue;
+    if (lessons.length === 0) {
+      console.log("No high-severity lessons found.");
+      return;
     }
-    const lesson = result.data;
-    if (existingIds.has(lesson.id)) {
-      skipped++;
-      continue;
+    outputSessionLessonsHuman(lessons, quiet);
+  });
+}
+async function readPlanFromStdin() {
+  const { stdin } = await import('process');
+  if (!stdin.isTTY) {
+    const chunks = [];
+    for await (const chunk of stdin) {
+      chunks.push(chunk);
     }
-    await appendLesson(repoRoot, lesson);
-    existingIds.add(lesson.id);
-    imported++;
-  }
-  const lessonWord = imported === 1 ? "lesson" : "lessons";
-  const parts = [];
-  if (skipped > 0) parts.push(`${skipped} skipped`);
-  if (invalid > 0) parts.push(`${invalid} invalid`);
-  if (parts.length > 0) {
-    console.log(`Imported ${imported} ${lessonWord} (${parts.join(", ")})`);
-  } else {
-    console.log(`Imported ${imported} ${lessonWord}`);
-  }
-});
-program.command("stats").description("Show database health and statistics").action(async () => {
-  const repoRoot = getRepoRoot();
-  await syncIfNeeded(repoRoot);
-  const { lessons } = await readLessons(repoRoot);
-  const deletedCount = await countTombstones(repoRoot);
-  const totalLessons = lessons.length;
-  const retrievalStats = getRetrievalStats(repoRoot);
-  const totalRetrievals = retrievalStats.reduce((sum, s) => sum + s.count, 0);
-  const avgRetrievals = totalLessons > 0 ? (totalRetrievals / totalLessons).toFixed(1) : "0.0";
-  const jsonlPath = join(repoRoot, LESSONS_PATH);
-  const dbPath = join(repoRoot, DB_PATH);
-  let dataSize = 0;
-  let indexSize = 0;
-  try {
-    dataSize = statSync(jsonlPath).size;
-  } catch {
+    return Buffer.concat(chunks).toString("utf-8").trim();
   }
-  try {
-    indexSize = statSync(dbPath).size;
-  } catch {
+  return void 0;
+}
+function outputCheckPlanJson(lessons) {
+  const jsonOutput = {
+    lessons: lessons.map((l) => ({
+      id: l.lesson.id,
+      insight: l.lesson.insight,
+      relevance: l.score,
+      source: l.lesson.source
+    })),
+    count: lessons.length
+  };
+  console.log(JSON.stringify(jsonOutput));
+}
+function outputCheckPlanHuman(lessons, quiet) {
+  console.log("## Lessons Check\n");
+  console.log("Relevant to your plan:\n");
+  lessons.forEach((item, i) => {
+    const num = i + 1;
+    console.log(`${num}. ${chalk.bold(`[${item.lesson.id}]`)} ${item.lesson.insight}`);
+    console.log(`   - Relevance: ${item.score.toFixed(RELEVANCE_DECIMAL_PLACES)}`);
+    console.log(`   - Source: ${item.lesson.source}`);
+    console.log();
+  });
+  if (!quiet) {
+    console.log("---");
+    console.log("Consider these lessons while implementing.");
   }
-  const totalSize = dataSize + indexSize;
-  const deletedInfo = deletedCount > 0 ? ` (${deletedCount} deleted)` : "";
-  console.log(`Lessons: ${totalLessons} total${deletedInfo}`);
-  console.log(`Retrievals: ${totalRetrievals} total, ${avgRetrievals} avg per lesson`);
-  console.log(`Storage: ${formatBytes(totalSize)} (index: ${formatBytes(indexSize)}, data: ${formatBytes(dataSize)})`);
-});
+}
+function registerCheckPlanCommand(program2) {
+  program2.command("check-plan").description("Check plan against relevant lessons").option("--plan <text>", "Plan text to check").option("--json", "Output as JSON").option("-n, --limit <number>", "Maximum results", DEFAULT_CHECK_PLAN_LIMIT).action(async function(options) {
+    const repoRoot = getRepoRoot();
+    const limit = parseLimit(options.limit, "limit");
+    const { quiet } = getGlobalOpts(this);
+    const planText = options.plan ?? await readPlanFromStdin();
+    if (!planText) {
+      out.error("No plan provided. Use --plan <text> or pipe text to stdin.");
+      process.exit(1);
+    }
+    if (!isModelAvailable()) {
+      if (options.json) {
+        console.log(JSON.stringify({
+          error: "Embedding model not available",
+          action: "Run: npx lna download-model"
+        }));
+      } else {
+        out.error("Embedding model not available");
+        console.log("");
+        console.log("Run: npx lna download-model");
+      }
+      process.exit(1);
+    }
+    try {
+      const result = await retrieveForPlan(repoRoot, planText, limit);
+      if (options.json) {
+        outputCheckPlanJson(result.lessons);
+        return;
+      }
+      if (result.lessons.length === 0) {
+        console.log("No relevant lessons found for this plan.");
+        return;
+      }
+      outputCheckPlanHuman(result.lessons, quiet);
+    } catch (err) {
+      const message = err instanceof Error ? err.message : "Unknown error";
+      if (options.json) {
+        console.log(JSON.stringify({ error: message }));
+      } else {
+        out.error(`Failed to check plan: ${message}`);
+      }
+      process.exit(1);
+    }
+  });
+}
+
+// src/cli.ts
+var program = new Command();
+program.name("learning-agent").description("Learning system for Claude Code session memory").version(VERSION).option("-v, --verbose", "Verbose output").option("-q, --quiet", "Minimal output");
+registerInitCommand(program);
+registerLearnCommand(program);
+registerCaptureCommand(program);
+registerDetectCommand(program);
+registerListCommand(program);
+registerSearchCommand(program);
+registerShowCommand(program);
+registerUpdateCommand(program);
+registerDeleteCommand(program);
+registerLoadSessionCommand(program);
+registerCheckPlanCommand(program);
+registerStatsCommand(program);
+registerRebuildCommand(program);
+registerCompactCommand(program);
+registerExportCommand(program);
+registerImportCommand(program);
+registerDownloadModelCommand(program);
+registerSetupCommand(program);
+registerHooksCommand(program);
 program.parse();
 //# sourceMappingURL=cli.js.map
 //# sourceMappingURL=cli.js.map