lazycodex-ai 5.0.0-beta.31 → 5.0.0-beta.32

package/packages/lsp-tools-mcp/dist/tools.js

@@ -284,6 +284,13 @@ import { pathToFileURL as pathToFileURL3 } from "node:url";
 // ../lsp-core/src/lsp/connection.ts
 import { pathToFileURL } from "node:url";
 
+// ../lsp-core/src/lsp/timer-provider.ts
+var realTimerProvider = {
+  now: () => Date.now(),
+  setTimeout: (callback, delayMs) => setTimeout(callback, delayMs),
+  clearTimeout: (handle) => clearTimeout(handle)
+};
+
 // ../lsp-core/src/lsp/constants.ts
 var DEFAULT_MAX_REFERENCES = 200;
 var DEFAULT_MAX_SYMBOLS = 200;
@@ -823,6 +830,7 @@ class LspClientTransport {
     this.documentFormattingSupported = false;
     this.requestTimeoutMs = timeouts.requestTimeoutMs ?? REQUEST_TIMEOUT_MS;
     this.initializeTimeoutMs = timeouts.initializeTimeoutMs ?? INIT_TIMEOUT_MS;
+    this.timerProvider = timeouts.timerProvider ?? realTimerProvider;
   }
   pid() {
     return this.proc?.pid;
@@ -923,7 +931,7 @@ class LspClientTransport {
     const options = args[1];
     const timeoutMs = options?.timeoutMs ?? this.requestTimeoutMs;
     const timeoutController = new AbortController;
-    const timeoutHandle = setTimeout(() => {
+    const timeoutHandle = this.timerProvider.setTimeout(() => {
       const stderrTail = this.stderrBuffer.slice(-5).join(`
 `);
       timeoutController.abort(new LspRequestTimeoutError(method, stderrTail || undefined));
@@ -942,7 +950,7 @@ class LspClientTransport {
       }
       throw error;
     } finally {
-      clearTimeout(timeoutHandle);
+      this.timerProvider.clearTimeout(timeoutHandle);
       combinedSignal.dispose();
     }
   }
@@ -1323,6 +1331,17 @@ function canonicalPath(filePath) {
     return absolute;
   }
 }
+function normalizeDocumentUri(uri) {
+  let decoded = uri;
+  try {
+    decoded = decodeURIComponent(uri);
+  } catch {
+    decoded = uri;
+  }
+  if (process.platform !== "win32")
+    return decoded;
+  return decoded.replace(/^(file:\/\/\/)([a-z]):/, (_match, prefix, drive) => `${prefix}${drive.toUpperCase()}:`);
+}
 function isSameOrDescendant(candidate, parent) {
   const suffix = relative2(parent, candidate);
   return suffix === "" || !suffix.startsWith("..") && suffix !== "..";
@@ -1339,7 +1358,12 @@ class WorkspaceDocumentState {
     this.openDocuments = new Map;
     this.openByUri = new Map;
     this.openPromises = new Map;
-    this.now = options.now ?? (() => Date.now());
+    this.timerProvider = options.timerProvider ?? {
+      now: options.now ?? (() => Date.now()),
+      setTimeout: (callback, delayMs) => setTimeout(callback, delayMs),
+      clearTimeout: (handle) => clearTimeout(handle)
+    };
+    this.now = () => this.timerProvider.now();
     this.versionlessPublishQuiescenceMs = options.versionlessPublishQuiescenceMs ?? DEFAULT_VERSIONLESS_PUBLISH_QUIESCENCE_MS;
   }
   async openFile(filePath) {
@@ -1361,7 +1385,7 @@ class WorkspaceDocumentState {
     return this.openDocuments.get(canonicalPath(filePath))?.version;
   }
   getStoredDiagnostics(uri) {
-    const state = this.openByUri.get(uri);
+    const state = this.openByUri.get(normalizeDocumentUri(uri));
     if (!state)
       return [];
     return state.lastPublish?.diagnostics ?? state.pullCache?.diagnostics ?? [];
@@ -1383,13 +1407,13 @@ class WorkspaceDocumentState {
     return state !== undefined && state.uri === snapshot.uri && state.version === snapshot.version && state.generation === snapshot.documentGeneration;
   }
   getPullCache(snapshot) {
-    const state = this.openByUri.get(snapshot.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(snapshot.uri));
     if (!state?.pullCache || state.pullCache.documentVersion !== snapshot.version)
       return null;
     return state.pullCache;
   }
   recordPullDiagnostics(snapshot, report) {
-    const state = this.openByUri.get(snapshot.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(snapshot.uri));
     if (!state)
       return;
     state.pullCache = {
@@ -1399,7 +1423,7 @@ class WorkspaceDocumentState {
     };
   }
   recordPublishedDiagnostics(params) {
-    const state = this.openByUri.get(params.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(params.uri));
     if (!state)
       return;
     state.publishGeneration += 1;
@@ -1413,7 +1437,7 @@ class WorkspaceDocumentState {
     this.notifyWaiters(state);
   }
   resolvePushDiagnostics(snapshot) {
-    const state = this.openByUri.get(snapshot.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(snapshot.uri));
     if (!state?.lastPublish)
       return { status: "missing" };
     const publish = state.lastPublish;
@@ -1427,7 +1451,7 @@ class WorkspaceDocumentState {
     return waitMs === 0 ? { status: "ready", diagnostics: publish.diagnostics } : { status: "wait", waitMs };
   }
   waitForDiagnosticsActivity(snapshot, timeoutMs) {
-    const state = this.openByUri.get(snapshot.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(snapshot.uri));
     if (!state || timeoutMs <= 0)
       return Promise.resolve();
     return new Promise((resolveActivity) => {
@@ -1436,11 +1460,11 @@ class WorkspaceDocumentState {
         if (settled)
           return;
         settled = true;
-        clearTimeout(timer);
+        this.timerProvider.clearTimeout(timer);
         state.waiters.delete(finish);
         resolveActivity();
       };
-      const timer = setTimeout(finish, timeoutMs);
+      const timer = this.timerProvider.setTimeout(finish, timeoutMs);
       if (typeof timer.unref === "function")
         timer.unref();
       state.waiters.add(finish);
@@ -1548,7 +1572,7 @@ class WorkspaceDocumentState {
         waiters: new Set
       };
       this.openDocuments.set(path, state);
-      this.openByUri.set(state.uri, state);
+      this.openByUri.set(normalizeDocumentUri(state.uri), state);
       this.notifyWaiters(state);
       await this.sendNotification("textDocument/didOpen", {
         textDocument: { uri: state.uri, languageId: state.languageId, version: state.version, text }
@@ -1573,7 +1597,7 @@ class WorkspaceDocumentState {
   }
   async closeDocument(state) {
     this.openDocuments.delete(state.path);
-    this.openByUri.delete(state.uri);
+    this.openByUri.delete(normalizeDocumentUri(state.uri));
     this.clearDiagnostics(state.uri);
     this.notifyWaiters(state);
     await this.sendNotification("textDocument/didClose", { textDocument: { uri: state.uri } });
@@ -2660,6 +2684,7 @@ class LspClient extends LspClientConnection {
     this.diagnosticPullErrors = [];
     this.diagnosticsFreshnessTimeoutMs = options.diagnosticsFreshnessTimeoutMs ?? DIAGNOSTICS_FRESHNESS_TIMEOUT_MS;
     this.documents = new WorkspaceDocumentState((method, params) => this.sendNotification(method, params), (uri) => this.diagnosticsStore.delete(uri), {
+      timerProvider: this.timerProvider,
       versionlessPublishQuiescenceMs: options.versionlessPublishQuiescenceMs ?? VERSIONLESS_PUBLISH_QUIESCENCE_MS
     });
     this.workspaceMutations = new WorkspaceMutationController(root, this.documents);
@@ -2763,7 +2788,7 @@ class LspClient extends LspClientConnection {
     const absPath = this.resolveWorkspacePath(filePath);
     const uri = pathToFileURL3(absPath).href;
     await this.openFile(absPath);
-    const deadlineAt = Date.now() + this.diagnosticsFreshnessTimeoutMs;
+    const deadlineAt = this.timerProvider.now() + this.diagnosticsFreshnessTimeoutMs;
     for (;; ) {
       signal?.throwIfAborted();
       const snapshot = this.documents.captureDiagnosticSnapshot(absPath);
@@ -2776,7 +2801,7 @@ class LspClient extends LspClientConnection {
       if (!pushFallbackOnly) {
         const cached = this.documents.getPullCache(snapshot);
         try {
-          const remainingMs2 = deadlineAt - Date.now();
+          const remainingMs2 = deadlineAt - this.timerProvider.now();
           if (remainingMs2 <= 0)
             return this.freshnessTimeout(absPath);
           const result = await this.sendRequest("textDocument/diagnostic", {
@@ -2811,7 +2836,7 @@ class LspClient extends LspClientConnection {
       }
       if (!pushFallbackOnly)
         continue;
-      const remainingMs = deadlineAt - Date.now();
+      const remainingMs = deadlineAt - this.timerProvider.now();
       if (remainingMs <= 0) {
         if (!this.isDiagnosticPullSupported() && snapshot.publishGeneration === 0) {
           const cached = this.documents.getPullCache(snapshot);

package/packages/lsp-tools-mcp/package.json

@@ -32,7 +32,7 @@
 		"CHANGELOG.md"
 	],
 	"scripts": {
-		"build": "node scripts/ensure-core-links.mjs && rm -rf dist && tsc -p tsconfig.build.json --emitDeclarationOnly && bun build src/cli.ts src/mcp.ts src/tools.ts src/request-context.ts src/lsp/manager.ts --outdir dist --target node --format esm",
+		"build": "node scripts/ensure-core-links.mjs && node -e \"require('node:fs').rmSync('dist',{recursive:true,force:true})\" && tsc -p tsconfig.build.json --emitDeclarationOnly && bun build src/cli.ts src/mcp.ts src/tools.ts src/request-context.ts src/lsp/manager.ts --outdir dist --target node --format esm",
 		"test": "vitest --run",
 		"test:watch": "vitest",
 		"typecheck": "tsc --noEmit",

package/packages/omo-codex/plugin/.codex-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "omo",
-  "version": "5.0.0-beta.31",
+  "version": "5.0.0-beta.32",
   "description": "One Codex plugin namespace for Yeongyu's local Codex components.",
   "author": {
     "name": "Yeongyu Kim",

package/packages/omo-codex/plugin/components/bootstrap/hooks/hooks.json

@@ -8,7 +8,7 @@
 						"command": "node \"${PLUGIN_ROOT}/components/bootstrap/dist/cli.js\" hook session-start",
 						"commandWindows": "powershell -NoProfile -ExecutionPolicy Bypass -File \"${PLUGIN_ROOT}\\components\\bootstrap\\scripts\\bootstrap.ps1\"",
 						"timeout": 30,
-						"statusMessage": "(OmO 5.0.0-beta.31) Checking Bootstrap Provisioning"
+						"statusMessage": "(OmO 5.0.0-beta.32) Checking Bootstrap Provisioning"
 					}
 				]
 			}

package/packages/omo-codex/plugin/components/bootstrap/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@sisyphuslabs/codex-bootstrap",
-	"version": "5.0.0-beta.31",
+	"version": "5.0.0-beta.32",
 	"description": "Codex SessionStart bootstrap component that provisions LazyCodex runtime dependencies from a detached worker.",
 	"type": "module",
 	"private": true,

package/packages/omo-codex/plugin/components/codegraph/dist/cli.js

@@ -5582,11 +5582,7 @@ var OmoMemorySearchSchema = object({
 }).strict();
 var OmoMemoryRecallSchema = object({
   enabled: boolean2().default(true),
-  max_items: number2().int().min(1).max(5).default(2),
-  budget_tokens: number2().int().positive().default(600),
-  excerpt_chars: number2().int().positive().default(200),
-  min_score: number2().optional(),
-  exclude: array(string2()).default([])
+  max_items: number2().int().min(1).max(5).default(2)
 }).strict();
 var OmoMemoryNudgeSchema = object({
   enabled: boolean2().default(true),
@@ -5636,11 +5632,7 @@ var OmoMemorySearchLayerSchema = object({
 }).strict();
 var OmoMemoryRecallLayerSchema = object({
   enabled: boolean2().optional(),
-  max_items: number2().int().min(1).max(5).optional(),
-  budget_tokens: number2().int().positive().optional(),
-  excerpt_chars: number2().int().positive().optional(),
-  min_score: number2().optional(),
-  exclude: array(string2()).optional()
+  max_items: number2().int().min(1).max(5).optional()
 }).strict();
 var OmoMemoryNudgeLayerSchema = object({
   enabled: boolean2().optional(),
@@ -5711,13 +5703,7 @@ var OmoMemorySettingsSchema = object({
   write_notice: OmoMemoryWriteNoticeSchema.default({ enabled: true }),
   sync: OmoMemorySyncSchema.default({ enabled: true }),
   search: OmoMemorySearchSchema.default({ enabled: true }),
-  recall: OmoMemoryRecallSchema.default({
-    enabled: true,
-    max_items: 2,
-    budget_tokens: 600,
-    excerpt_chars: 200,
-    exclude: []
-  }),
+  recall: OmoMemoryRecallSchema.default({ enabled: true, max_items: 2 }),
   compile_warn_tokens: number2().int().positive().default(30000),
   agents: record(string2(), OmoMemoryAgentOverridesSchema).default({})
 }).strict();

package/packages/omo-codex/plugin/components/codegraph/dist/serve.js

@@ -5848,11 +5848,7 @@ var OmoMemorySearchSchema = object({
 }).strict();
 var OmoMemoryRecallSchema = object({
   enabled: boolean2().default(true),
-  max_items: number2().int().min(1).max(5).default(2),
-  budget_tokens: number2().int().positive().default(600),
-  excerpt_chars: number2().int().positive().default(200),
-  min_score: number2().optional(),
-  exclude: array(string2()).default([])
+  max_items: number2().int().min(1).max(5).default(2)
 }).strict();
 var OmoMemoryNudgeSchema = object({
   enabled: boolean2().default(true),
@@ -5902,11 +5898,7 @@ var OmoMemorySearchLayerSchema = object({
 }).strict();
 var OmoMemoryRecallLayerSchema = object({
   enabled: boolean2().optional(),
-  max_items: number2().int().min(1).max(5).optional(),
-  budget_tokens: number2().int().positive().optional(),
-  excerpt_chars: number2().int().positive().optional(),
-  min_score: number2().optional(),
-  exclude: array(string2()).optional()
+  max_items: number2().int().min(1).max(5).optional()
 }).strict();
 var OmoMemoryNudgeLayerSchema = object({
   enabled: boolean2().optional(),
@@ -5977,13 +5969,7 @@ var OmoMemorySettingsSchema = object({
   write_notice: OmoMemoryWriteNoticeSchema.default({ enabled: true }),
   sync: OmoMemorySyncSchema.default({ enabled: true }),
   search: OmoMemorySearchSchema.default({ enabled: true }),
-  recall: OmoMemoryRecallSchema.default({
-    enabled: true,
-    max_items: 2,
-    budget_tokens: 600,
-    excerpt_chars: 200,
-    exclude: []
-  }),
+  recall: OmoMemoryRecallSchema.default({ enabled: true, max_items: 2 }),
   compile_warn_tokens: number2().int().positive().default(30000),
   agents: record(string2(), OmoMemoryAgentOverridesSchema).default({})
 }).strict();

package/packages/omo-codex/plugin/components/codegraph/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@sisyphuslabs/codex-codegraph",
-	"version": "5.0.0-beta.31",
+	"version": "5.0.0-beta.32",
 	"description": "Codex plugin MCP wrapper for CodeGraph.",
 	"type": "module",
 	"private": true,

package/packages/omo-codex/plugin/components/comment-checker/hooks/hooks.json

@@ -8,7 +8,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/dist/cli.js\" hook post-tool-use",
 						"timeout": 30,
-						"statusMessage": "(OmO 5.0.0-beta.31) Checking Comments"
+						"statusMessage": "(OmO 5.0.0-beta.32) Checking Comments"
 					}
 				]
 			}

package/packages/omo-codex/plugin/components/comment-checker/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@code-yeongyu/codex-comment-checker",
-	"version": "5.0.0-beta.31",
+	"version": "5.0.0-beta.32",
 	"description": "Codex plugin that runs comment-checker after edit-like PostToolUse hooks.",
 	"type": "module",
 	"packageManager": "npm@11.12.1",

package/packages/omo-codex/plugin/components/git-bash/hooks/hooks.json

@@ -8,7 +8,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/dist/cli.js\" hook pre-tool-use",
 						"timeout": 5,
-						"statusMessage": "(OmO 5.0.0-beta.31) Recommending Git Bash MCP"
+						"statusMessage": "(OmO 5.0.0-beta.32) Recommending Git Bash MCP"
 					}
 				]
 			}
@@ -20,7 +20,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/dist/cli.js\" hook post-compact",
 						"timeout": 5,
-						"statusMessage": "(OmO 5.0.0-beta.31) Resetting Git Bash MCP Reminder"
+						"statusMessage": "(OmO 5.0.0-beta.32) Resetting Git Bash MCP Reminder"
 					}
 				]
 			}

package/packages/omo-codex/plugin/components/git-bash/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@sisyphuslabs/codex-git-bash-hook",
-	"version": "5.0.0-beta.31",
+	"version": "5.0.0-beta.32",
 	"description": "Codex hook component that reminds Windows sessions to prefer the OMO git_bash MCP.",
 	"type": "module",
 	"private": true,

package/packages/omo-codex/plugin/components/lazycodex-executor-verify/hooks/hooks.json

@@ -8,7 +8,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/components/lazycodex-executor-verify/dist/cli.js\" hook subagent-stop",
 						"timeout": 10,
-						"statusMessage": "(OmO 5.0.0-beta.31) Verifying LazyCodex Executor Evidence"
+						"statusMessage": "(OmO 5.0.0-beta.32) Verifying LazyCodex Executor Evidence"
 					}
 				]
 			}

package/packages/omo-codex/plugin/components/lazycodex-executor-verify/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@code-yeongyu/codex-lazycodex-executor-verify",
-	"version": "5.0.0-beta.31",
+	"version": "5.0.0-beta.32",
 	"description": "Codex SubagentStop evidence verifier for LazyCodex executor completions.",
 	"type": "module",
 	"packageManager": "npm@11.12.1",

package/packages/omo-codex/plugin/components/lsp/dist/.omo-runtime-manifest.json

@@ -1,7 +1,7 @@
 {
   "schemaVersion": 1,
-  "version": "5.0.0-beta.31",
-  "inputDigest": "sha256:858b6dbf85523225a57282289db35b4a82d608613a4a5930ce1d85a86b4296b4",
+  "version": "5.0.0-beta.32",
+  "inputDigest": "sha256:7ebeb55787bcfcf32f5cdd2782c145f22c9aa8c595b7dedde0228036267ccfee",
   "outputs": [
     {
       "path": "cli.d.ts",
@@ -9,7 +9,7 @@
     },
     {
       "path": "cli.js",
-      "sha256": "d20c513dadc159abf9ecbc16198769b6b872a77472ac64a78d137e6c73c5debb"
+      "sha256": "89f0a2360dc1977cc00f2cdb661ff6929a7b90131728488502834a372840db3c"
     },
     {
       "path": "codex-hook-cli.d.ts",

package/packages/omo-codex/plugin/components/lsp/dist/cli.js

@@ -766,6 +766,11 @@ function reportBestEffortCleanupError(operation, error, logger = writeCleanupErr
   const message = error instanceof Error ? error.message : String(error);
   logger(`[lsp] ignored ${operation} failure during cleanup: ${message}`);
 }
+var realTimerProvider = {
+  now: () => Date.now(),
+  setTimeout: (callback, delayMs) => setTimeout(callback, delayMs),
+  clearTimeout: (handle) => clearTimeout(handle)
+};
 var DEFAULT_MAX_REFERENCES = 200;
 var DEFAULT_MAX_SYMBOLS = 200;
 var DEFAULT_MAX_DIAGNOSTICS = 200;
@@ -1294,6 +1299,7 @@ class LspClientTransport {
     this.documentFormattingSupported = false;
     this.requestTimeoutMs = timeouts.requestTimeoutMs ?? REQUEST_TIMEOUT_MS;
     this.initializeTimeoutMs = timeouts.initializeTimeoutMs ?? INIT_TIMEOUT_MS;
+    this.timerProvider = timeouts.timerProvider ?? realTimerProvider;
   }
   pid() {
     return this.proc?.pid;
@@ -1394,7 +1400,7 @@ class LspClientTransport {
     const options = args[1];
     const timeoutMs = options?.timeoutMs ?? this.requestTimeoutMs;
     const timeoutController = new AbortController;
-    const timeoutHandle = setTimeout(() => {
+    const timeoutHandle = this.timerProvider.setTimeout(() => {
       const stderrTail = this.stderrBuffer.slice(-5).join(`
 `);
       timeoutController.abort(new LspRequestTimeoutError(method, stderrTail || undefined));
@@ -1413,7 +1419,7 @@ class LspClientTransport {
       }
       throw error;
     } finally {
-      clearTimeout(timeoutHandle);
+      this.timerProvider.clearTimeout(timeoutHandle);
       combinedSignal.dispose();
     }
   }
@@ -1783,6 +1789,17 @@ function canonicalPath(filePath) {
     return absolute;
   }
 }
+function normalizeDocumentUri(uri) {
+  let decoded = uri;
+  try {
+    decoded = decodeURIComponent(uri);
+  } catch {
+    decoded = uri;
+  }
+  if (process.platform !== "win32")
+    return decoded;
+  return decoded.replace(/^(file:\/\/\/)([a-z]):/, (_match, prefix, drive) => `${prefix}${drive.toUpperCase()}:`);
+}
 function isSameOrDescendant(candidate, parent) {
   const suffix = relative2(parent, candidate);
   return suffix === "" || !suffix.startsWith("..") && suffix !== "..";
@@ -1799,7 +1816,12 @@ class WorkspaceDocumentState {
     this.openDocuments = new Map;
     this.openByUri = new Map;
     this.openPromises = new Map;
-    this.now = options.now ?? (() => Date.now());
+    this.timerProvider = options.timerProvider ?? {
+      now: options.now ?? (() => Date.now()),
+      setTimeout: (callback, delayMs) => setTimeout(callback, delayMs),
+      clearTimeout: (handle) => clearTimeout(handle)
+    };
+    this.now = () => this.timerProvider.now();
     this.versionlessPublishQuiescenceMs = options.versionlessPublishQuiescenceMs ?? DEFAULT_VERSIONLESS_PUBLISH_QUIESCENCE_MS;
   }
   async openFile(filePath) {
@@ -1821,7 +1843,7 @@ class WorkspaceDocumentState {
     return this.openDocuments.get(canonicalPath(filePath))?.version;
   }
   getStoredDiagnostics(uri) {
-    const state = this.openByUri.get(uri);
+    const state = this.openByUri.get(normalizeDocumentUri(uri));
     if (!state)
       return [];
     return state.lastPublish?.diagnostics ?? state.pullCache?.diagnostics ?? [];
@@ -1843,13 +1865,13 @@ class WorkspaceDocumentState {
     return state !== undefined && state.uri === snapshot.uri && state.version === snapshot.version && state.generation === snapshot.documentGeneration;
   }
   getPullCache(snapshot) {
-    const state = this.openByUri.get(snapshot.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(snapshot.uri));
     if (!state?.pullCache || state.pullCache.documentVersion !== snapshot.version)
       return null;
     return state.pullCache;
   }
   recordPullDiagnostics(snapshot, report) {
-    const state = this.openByUri.get(snapshot.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(snapshot.uri));
     if (!state)
       return;
     state.pullCache = {
@@ -1859,7 +1881,7 @@ class WorkspaceDocumentState {
     };
   }
   recordPublishedDiagnostics(params) {
-    const state = this.openByUri.get(params.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(params.uri));
     if (!state)
       return;
     state.publishGeneration += 1;
@@ -1873,7 +1895,7 @@ class WorkspaceDocumentState {
     this.notifyWaiters(state);
   }
   resolvePushDiagnostics(snapshot) {
-    const state = this.openByUri.get(snapshot.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(snapshot.uri));
     if (!state?.lastPublish)
       return { status: "missing" };
     const publish = state.lastPublish;
@@ -1887,7 +1909,7 @@ class WorkspaceDocumentState {
     return waitMs === 0 ? { status: "ready", diagnostics: publish.diagnostics } : { status: "wait", waitMs };
   }
   waitForDiagnosticsActivity(snapshot, timeoutMs) {
-    const state = this.openByUri.get(snapshot.uri);
+    const state = this.openByUri.get(normalizeDocumentUri(snapshot.uri));
     if (!state || timeoutMs <= 0)
       return Promise.resolve();
     return new Promise((resolveActivity) => {
@@ -1896,11 +1918,11 @@ class WorkspaceDocumentState {
         if (settled)
           return;
         settled = true;
-        clearTimeout(timer);
+        this.timerProvider.clearTimeout(timer);
         state.waiters.delete(finish);
         resolveActivity();
       };
-      const timer = setTimeout(finish, timeoutMs);
+      const timer = this.timerProvider.setTimeout(finish, timeoutMs);
       if (typeof timer.unref === "function")
         timer.unref();
       state.waiters.add(finish);
@@ -2008,7 +2030,7 @@ class WorkspaceDocumentState {
         waiters: new Set
       };
       this.openDocuments.set(path2, state);
-      this.openByUri.set(state.uri, state);
+      this.openByUri.set(normalizeDocumentUri(state.uri), state);
       this.notifyWaiters(state);
       await this.sendNotification("textDocument/didOpen", {
         textDocument: { uri: state.uri, languageId: state.languageId, version: state.version, text }
@@ -2033,7 +2055,7 @@ class WorkspaceDocumentState {
   }
   async closeDocument(state) {
     this.openDocuments.delete(state.path);
-    this.openByUri.delete(state.uri);
+    this.openByUri.delete(normalizeDocumentUri(state.uri));
     this.clearDiagnostics(state.uri);
     this.notifyWaiters(state);
     await this.sendNotification("textDocument/didClose", { textDocument: { uri: state.uri } });
@@ -3083,6 +3105,7 @@ class LspClient extends LspClientConnection {
     this.diagnosticPullErrors = [];
     this.diagnosticsFreshnessTimeoutMs = options.diagnosticsFreshnessTimeoutMs ?? DIAGNOSTICS_FRESHNESS_TIMEOUT_MS;
     this.documents = new WorkspaceDocumentState((method, params) => this.sendNotification(method, params), (uri) => this.diagnosticsStore.delete(uri), {
+      timerProvider: this.timerProvider,
       versionlessPublishQuiescenceMs: options.versionlessPublishQuiescenceMs ?? VERSIONLESS_PUBLISH_QUIESCENCE_MS
     });
     this.workspaceMutations = new WorkspaceMutationController(root, this.documents);
@@ -3186,7 +3209,7 @@ class LspClient extends LspClientConnection {
     const absPath = this.resolveWorkspacePath(filePath);
     const uri = pathToFileURL3(absPath).href;
     await this.openFile(absPath);
-    const deadlineAt = Date.now() + this.diagnosticsFreshnessTimeoutMs;
+    const deadlineAt = this.timerProvider.now() + this.diagnosticsFreshnessTimeoutMs;
     for (;; ) {
       signal?.throwIfAborted();
       const snapshot = this.documents.captureDiagnosticSnapshot(absPath);
@@ -3199,7 +3222,7 @@ class LspClient extends LspClientConnection {
       if (!pushFallbackOnly) {
         const cached = this.documents.getPullCache(snapshot);
         try {
-          const remainingMs2 = deadlineAt - Date.now();
+          const remainingMs2 = deadlineAt - this.timerProvider.now();
           if (remainingMs2 <= 0)
             return this.freshnessTimeout(absPath);
           const result = await this.sendRequest("textDocument/diagnostic", {
@@ -3234,7 +3257,7 @@ class LspClient extends LspClientConnection {
       }
       if (!pushFallbackOnly)
         continue;
-      const remainingMs = deadlineAt - Date.now();
+      const remainingMs = deadlineAt - this.timerProvider.now();
       if (remainingMs <= 0) {
         if (!this.isDiagnosticPullSupported() && snapshot.publishGeneration === 0) {
           const cached = this.documents.getPullCache(snapshot);

package/packages/omo-codex/plugin/components/lsp/hooks/hooks.json

@@ -8,7 +8,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/dist/cli.js\" hook post-tool-use",
 						"timeout": 60,
-						"statusMessage": "(OmO 5.0.0-beta.31) Checking LSP Diagnostics"
+						"statusMessage": "(OmO 5.0.0-beta.32) Checking LSP Diagnostics"
 					}
 				]
 			}
@@ -21,7 +21,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/dist/cli.js\" hook post-compact",
 						"timeout": 5,
-						"statusMessage": "(OmO 5.0.0-beta.31) Resetting LSP Diagnostics Cache"
+						"statusMessage": "(OmO 5.0.0-beta.32) Resetting LSP Diagnostics Cache"
 					}
 				]
 			}

package/packages/omo-codex/plugin/components/lsp/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@code-yeongyu/codex-lsp",
-	"version": "5.0.0-beta.31",
+	"version": "5.0.0-beta.32",
 	"description": "Codex plugin that exposes Language Server Protocol tools and post-edit diagnostics.",
 	"type": "module",
 	"packageManager": "npm@11.12.1",

package/packages/omo-codex/plugin/components/rules/hooks/hooks.json

@@ -7,7 +7,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/dist/cli.js\" hook session-start",
 						"timeout": 10,
-						"statusMessage": "(OmO 5.0.0-beta.31) Loading Project Rules"
+						"statusMessage": "(OmO 5.0.0-beta.32) Loading Project Rules"
 					}
 				]
 			}
@@ -19,7 +19,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/dist/cli.js\" hook user-prompt-submit",
 						"timeout": 10,
-						"statusMessage": "(OmO 5.0.0-beta.31) Loading Project Rules"
+						"statusMessage": "(OmO 5.0.0-beta.32) Loading Project Rules"
 					}
 				]
 			}
@@ -32,7 +32,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/dist/cli.js\" hook post-tool-use",
 						"timeout": 10,
-						"statusMessage": "(OmO 5.0.0-beta.31) Matching Project Rules"
+						"statusMessage": "(OmO 5.0.0-beta.32) Matching Project Rules"
 					}
 				]
 			}
@@ -45,7 +45,7 @@
 						"type": "command",
 						"command": "node \"${PLUGIN_ROOT}/dist/cli.js\" hook post-compact",
 						"timeout": 10,
-						"statusMessage": "(OmO 5.0.0-beta.31) Resetting Project Rule Cache"
+						"statusMessage": "(OmO 5.0.0-beta.32) Resetting Project Rule Cache"
 					}
 				]
 			}

package/packages/omo-codex/plugin/components/rules/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@code-yeongyu/codex-rules",
-	"version": "5.0.0-beta.31",
+	"version": "5.0.0-beta.32",
 	"description": "Codex plugin that injects project rule files into model context through lifecycle hooks.",
 	"type": "module",
 	"packageManager": "npm@11.12.1",