larvitar 3.5.6 → 3.6.1

package/dist/imaging/MetaDataTypes.d.ts

@@ -1835,9 +1835,9 @@ export type MetaDataTypes = {
     x00281080?: string;
     x00281090?: string;
     x00281100?: number;
-    x00281101?: number;
-    x00281102?: number;
-    x00281103?: number;
+    x00281101?: number[];
+    x00281102?: number[];
+    x00281103?: number[];
     x00281104?: number;
     x00281111?: number;
     x00281112?: number;
@@ -3492,4 +3492,5 @@ export type MetaDataTypes = {
     x300e0005?: string;
     x300e0008?: string;
     x50003000?: MetaDataTypes[];
+    x7fe00010?: number;
 };

package/dist/imaging/imageUtils.d.ts

@@ -2,7 +2,7 @@
  *  @desc This file provides utility functions for
  *        manipulating image pixels and image metadata
  */
-import type { CustomDataSet, MetaData, ReslicedInstance, Series } from "./types";
+import type { CustomDataSet, MetaData, ReslicedInstance, Series, TypedArray } from "./types";
 /**
  * @typedef {Object} CornerstoneSeries
  * @property {Array} imageIds Array of the instances imageIds
@@ -16,20 +16,30 @@ import type { CustomDataSet, MetaData, ReslicedInstance, Series } from "./types"
  * @param {Array} el - The image_orientation dicom tag
  */
 export declare const getNormalOrientation: (el: [number, number, number, number, number, number]) => number[];
+/**
+ * Get the min and max pixel value from pixelData
+ * @instance
+ * @function getMinPixelValue
+ * @param {Array} pixelData - Pixel data array
+ */
+export declare const getMinMaxPixelValue: (pixelData: number[] | TypedArray) => {
+    minPixelValue: number;
+    maxPixelValue: number;
+};
 /**
  * Get the min pixel value from pixelData
  * @instance
  * @function getMinPixelValue
  * @param {Array} pixelData - Pixel data array
  */
-export declare const getMinPixelValue: (pixelData: number[]) => number;
+export declare const getMinPixelValue: (pixelData: number[] | TypedArray) => number;
 /**
  * Get the max pixel value from pixelData
  * @instance
  * @function getMaxPixelValue
  * @param {Array} pixelData - Pixel data array
  */
-export declare const getMaxPixelValue: (pixelData: number[]) => number;
+export declare const getMaxPixelValue: (pixelData: number[] | TypedArray) => number;
 /**
  * Create the pixel representation string (type and length) from dicom tags
  * @instance

package/dist/imaging/loaders/commonLoader.d.ts

@@ -3,31 +3,13 @@
  *        custom DICOMImageLoaders
  */
 import { DataSet } from "dicom-parser";
-import type { MetaData } from "../types";
+import type { ImageFrame, MetaData } from "../types";
 /**
  * Compute and return image frame
  * @instance
  * @function getImageFrame
- * @param {Object} metadata metadata object
- * @param {Object} dataSet dicom dataset
+ * @param {MetaData} metadata metadata object
+ * @param {DataSet} dataSet dicom dataset
  * @returns {Object} specific image frame
  */
-export declare const getImageFrame: (metadata: MetaData, dataSet: DataSet) => {
-    samplesPerPixel: any;
-    photometricInterpretation: any;
-    planarConfiguration: any;
-    rows: any;
-    columns: any;
-    bitsAllocated: any;
-    pixelRepresentation: any;
-    smallestPixelValue: any;
-    largestPixelValue: any;
-    redPaletteColorLookupTableDescriptor: any;
-    greenPaletteColorLookupTableDescriptor: any;
-    bluePaletteColorLookupTableDescriptor: any;
-    redPaletteColorLookupTableData: any;
-    greenPaletteColorLookupTableData: any;
-    bluePaletteColorLookupTableData: any;
-    pixelData: undefined;
-    ImageData: undefined;
-};
+export declare const getImageFrame: (metadata: MetaData, dataSet?: DataSet) => ImageFrame;

package/dist/imaging/loaders/singleFrameLoader.d.ts

@@ -7,11 +7,11 @@ import type { ImageObject, MetaData } from "../types";
  * Set the single frame cache
  * @export
  * @function setSingleFrameCache
- * @param {Array} data - Pixel data array
+ * @param {Array} pixelData - Pixel data array
  * @param {MetaData} metadata - Metadata object
  * @returns {ImageObject} - Image object
  */
-export declare const setSingleFrameCache: (data: Uint8ClampedArray, metadata: MetaData) => Promise<ImageObject>;
+export declare const setSingleFrameCache: (pixelData: Uint8ClampedArray, metadata: MetaData) => Promise<ImageObject>;
 /**
  * Clear single frame cache
  * @export

package/dist/imaging/postProcessing/applyKernel.d.ts

@@ -0,0 +1,29 @@
+import { Image, TypedArray, KernelConfig } from "../types";
+/**
+ * Apply convolution filter to DICOM image
+ * @param {Object} loadedImage - The DICOM image object
+ * @param {string} filterName - Name of the filter to apply
+ * @param {number} multiplier - Optional multiplier for kernel values (default: 1)
+ * @returns {TypedArray} - Convolved pixel data
+ */
+export declare function applyConvolutionFilter(loadedImage: Image, filterName: string, generateImage?: boolean, multiplier?: number): Partial<Image> | TypedArray;
+/**
+ * Create the filtered image
+ * @param {string} name - Name for the new kernel
+ * @param {Object} config - Kernel configuration (modality, label, size, kernel)
+ * @returns {Partial<Image>} - Convolved pixel data
+ */
+export declare function createFilteredImage(loadedImage: Image, filteredPixelArray: number[]): Partial<Image>;
+/**
+ * Add custom kernel to the global object
+ * @param {string} name - Name for the new kernel
+ * @param {Object} config - Kernel configuration (modality, label, size, kernel)
+ */
+export declare function addCustomKernel(name: string, config: KernelConfig): void;
+/**
+ * Get kernels
+ * @returns {Object} - CONVOLUTION_KERNELS object
+ */
+export declare function getKernels(): {
+    [x: string]: KernelConfig;
+};

package/dist/imaging/types.d.ts

@@ -239,16 +239,23 @@ export type FileManager = {
     [key: string]: string;
 } | null;
 export type ImageFrame = {
+    samplesPerPixel?: number;
+    photometricInterpretation?: string;
+    planarConfiguration?: number;
+    rows?: number;
+    columns?: number;
+    bitsAllocated?: number;
+    pixelRepresentation?: number;
+    smallestPixelValue?: number;
+    largestPixelValue?: number;
+    redPaletteColorLookupTableDescriptor?: number[];
+    greenPaletteColorLookupTableDescriptor?: number[];
+    bluePaletteColorLookupTableDescriptor?: number[];
+    redPaletteColorLookupTableData?: Uint8Array;
+    greenPaletteColorLookupTableData?: Uint8Array;
+    bluePaletteColorLookupTableData?: Uint8Array;
     pixelData?: Uint8ClampedArray | Uint16Array | Int16Array | Uint8Array;
-    bitsAllocated: number;
-    rows: number;
-    columns: number;
-    photometricInterpretation: string;
-    samplesPerPixel: number;
-    smallestPixelValue: number;
-    largestPixelValue: number;
     imageData?: ImageData;
-    pixelRepresentation: number;
 };
 export type ImageTracker = {
     [key: string]: string;
@@ -332,7 +339,13 @@ type translation = {
     x: number;
     y: number;
 };
+export type KernelConfig = {
+    label: string;
+    size: number;
+    kernel: number[][];
+};
 export type RenderProps = {
+    filterName?: string;
     cached?: boolean;
     imageIndex?: number;
     scale?: number;

package/dist/index.d.ts

@@ -13,7 +13,7 @@ import { parseContours } from "./imaging/imageContours";
 import { parseECG } from "./imaging/parsers/ecg";
 import { renderECG, unrenderECG, syncECGFrame, updateECGMarker, updateECGTotalTime, getDefaultECGLayout } from "./imaging/waveforms/ecg";
 import { getImagePresets, setImagePreset, setImageCustomPreset } from "./imaging/imagePresets";
-import { getNormalOrientation, getMinPixelValue, getMaxPixelValue, getPixelRepresentation, getTypedArrayFromDataType, getSortedStack, randomId, getMeanValue, getReslicedMetadata, getReslicedPixeldata, getDistanceBetweenSlices, getImageMetadata } from "./imaging/imageUtils";
+import { getNormalOrientation, getMinPixelValue, getMaxPixelValue, getMinMaxPixelValue, getPixelRepresentation, getTypedArrayFromDataType, getSortedStack, randomId, getMeanValue, getReslicedMetadata, getReslicedPixeldata, getDistanceBetweenSlices, getImageMetadata } from "./imaging/imageUtils";
 import { buildHeader, getCachedPixelData, buildData, buildDataAsync, importNRRDImage, exportImageToBase64, exportImageToBase64OriginalSizes } from "./imaging/imageIo";
 import { anonymize } from "./imaging/imageAnonymization";
 import { customizeByteArray } from "./imaging/imageCustomization";
@@ -36,9 +36,10 @@ import { populateDsaImageIds } from "./imaging/loaders/dsaImageLoader";
 import { resetFileLoader, getFileCustomImageId } from "./imaging/loaders/fileLoader";
 import { getColormapsList, applyColorMap, addColorMap, fillPixelData, HSVToRGB } from "./imaging/imageColormaps";
 import { applyDSAShift } from "./imaging/postProcessing/applyDSA";
+import { applyConvolutionFilter, addCustomKernel, getKernels } from "./imaging/postProcessing/applyKernel";
 import { addMouseKeyHandlers, removeMouseKeyHandlers, toggleMouseToolsListeners } from "./imaging/tools/interaction";
 import { updateImageManager, populateImageManager, getImageManager, resetImageManager, removeDataFromImageManager, getDataFromImageManager, getSopInstanceUIDFromImageManager, getImageTracker, populateGSPSManager, getGSPSManager, resetGSPSManager, getFileManager, resetFileManager, populateFileManager, getDataFromFileManager } from "./imaging/imageManagers";
-export { VERSION, cornerstone, cornerstoneTools, parseDicom, cornerstoneFileImageLoader, segModule, cornerstoneDICOMImageLoader, checkAndClearMemory, checkMemoryAllocation, getUsedMemory, getAvailableMemory, getPerformanceMonitor, activatePerformanceMonitor, deactivatePerformanceMonitor, store, parseECG, renderECG, unrenderECG, syncECGFrame, updateECGMarker, updateECGTotalTime, getDefaultECGLayout, getImagePresets, setImagePreset, setImageCustomPreset, getNormalOrientation, getMinPixelValue, getMaxPixelValue, getPixelRepresentation, getTypedArrayFromDataType, getSortedStack, randomId, getMeanValue, getReslicedMetadata, getReslicedPixeldata, getDistanceBetweenSlices, getImageMetadata, buildHeader, getCachedPixelData, buildData, buildDataAsync, importNRRDImage, exportImageToBase64, exportImageToBase64OriginalSizes, anonymize, customizeByteArray, buildLayer, updateLayer, getActiveLayer, setActiveLayer, initializeImageLoader, initializeWebImageLoader, initializeFileImageLoader, registerNRRDImageLoader, registerResliceLoader, registerMultiFrameImageLoader, registerSingleFrameImageLoader, registerDsaImageLoader, updateLoadedStack, reset, readFile, readFiles, parseDataSet, clearImageParsing, convertQidoMetadata, clearImageCache, clearStandardImageCache, clearDSAImageCache, loadAndCacheImages, renderFileImage, renderDICOMPDF, renderWebImage, disableViewport, unloadViewport, resizeViewport, renderImage, redrawImage, resetViewports, updateViewportData, toggleMouseToolsListeners, storeViewportData, invertImage, flipImageHorizontal, flipImageVertical, rotateImageLeft, rotateImageRight, updateImageManager, populateImageManager, getImageManager, resetImageManager, removeDataFromImageManager, getDataFromImageManager, getSopInstanceUIDFromImageManager, getImageTracker, populateGSPSManager, getGSPSManager, resetGSPSManager, populateFileManager, getFileManager, resetFileManager, getDataFromFileManager, resliceSeries, getColormapsList, applyColorMap, addColorMap, fillPixelData, HSVToRGB, parseContours, getImageFrame, buildNrrdImage, getNrrdImageId, loadNrrdImage, getImageIdFromSlice, getSliceNumberFromImageId, getNrrdSerieDimensions, loadReslicedImage, getDicomImageId, cacheImage, cacheImages, loadAndCacheImageStack, loadAndCacheDsaImageStack, loadMultiFrameImage, buildMultiFrameImage, getMultiFrameImageId, clearMultiFrameCache, setSingleFrameCache, clearSingleFrameCache, loadSingleFrameImage, populateDsaImageIds, resetFileLoader, getFileCustomImageId, applyDSAShift, addDiameterTool, addContoursTool, addMaskEditingTool, getCurrentMaskData, addStackStateToElement, addSeedsTool, clearMeasurements, getToolState, clearToolStateByName, updateDiameterTool, addToolStateSingleSlice, clearCornerstoneElements, syncToolStack, updateStackToolState, setSegmentationConfig, csToolsUpdateStack, initializeCSTools, setToolsStyle, addDefaultTools, addTool, setToolActive, setToolDisabled, setToolEnabled, setToolPassive, DEFAULT_TOOLS, dvTools, getDefaultToolsByType, setDefaultToolsProps, registerExternalTool, addMouseKeyHandlers, removeMouseKeyHandlers, initSegmentationModule, addSegmentationMask, setActiveLabelmap, setActiveSegment, undoLastStroke, redoLastStroke, setBrushProps, hexToRgb, rgbToHex, clearSegmentationState, deleteMask, enableBrushTool, disableBrushTool, toggleContourMode, toggleVisibility, getActiveLabelmapBuffer, updateTemporalViewportData, logger, setLogLevel };
+export { VERSION, cornerstone, cornerstoneTools, parseDicom, cornerstoneFileImageLoader, segModule, cornerstoneDICOMImageLoader, checkAndClearMemory, checkMemoryAllocation, getUsedMemory, getAvailableMemory, getPerformanceMonitor, activatePerformanceMonitor, deactivatePerformanceMonitor, store, parseECG, renderECG, unrenderECG, syncECGFrame, updateECGMarker, updateECGTotalTime, getDefaultECGLayout, getImagePresets, setImagePreset, setImageCustomPreset, getNormalOrientation, getMinPixelValue, getMaxPixelValue, getMinMaxPixelValue, getPixelRepresentation, getTypedArrayFromDataType, getSortedStack, randomId, getMeanValue, getReslicedMetadata, getReslicedPixeldata, getDistanceBetweenSlices, getImageMetadata, buildHeader, getCachedPixelData, buildData, buildDataAsync, importNRRDImage, exportImageToBase64, exportImageToBase64OriginalSizes, anonymize, customizeByteArray, buildLayer, updateLayer, getActiveLayer, setActiveLayer, initializeImageLoader, initializeWebImageLoader, initializeFileImageLoader, registerNRRDImageLoader, registerResliceLoader, registerMultiFrameImageLoader, registerSingleFrameImageLoader, registerDsaImageLoader, updateLoadedStack, reset, readFile, readFiles, parseDataSet, clearImageParsing, convertQidoMetadata, clearImageCache, clearStandardImageCache, clearDSAImageCache, loadAndCacheImages, renderFileImage, renderDICOMPDF, renderWebImage, disableViewport, unloadViewport, resizeViewport, renderImage, redrawImage, resetViewports, updateViewportData, toggleMouseToolsListeners, storeViewportData, invertImage, flipImageHorizontal, flipImageVertical, rotateImageLeft, rotateImageRight, updateImageManager, populateImageManager, getImageManager, resetImageManager, removeDataFromImageManager, getDataFromImageManager, getSopInstanceUIDFromImageManager, getImageTracker, populateGSPSManager, getGSPSManager, resetGSPSManager, populateFileManager, getFileManager, resetFileManager, getDataFromFileManager, resliceSeries, getColormapsList, applyColorMap, addColorMap, fillPixelData, HSVToRGB, parseContours, getImageFrame, buildNrrdImage, getNrrdImageId, loadNrrdImage, getImageIdFromSlice, getSliceNumberFromImageId, getNrrdSerieDimensions, loadReslicedImage, getDicomImageId, cacheImage, cacheImages, loadAndCacheImageStack, loadAndCacheDsaImageStack, loadMultiFrameImage, buildMultiFrameImage, getMultiFrameImageId, clearMultiFrameCache, setSingleFrameCache, clearSingleFrameCache, loadSingleFrameImage, populateDsaImageIds, resetFileLoader, getFileCustomImageId, applyDSAShift, applyConvolutionFilter, addCustomKernel, getKernels, addDiameterTool, addContoursTool, addMaskEditingTool, getCurrentMaskData, addStackStateToElement, addSeedsTool, clearMeasurements, getToolState, clearToolStateByName, updateDiameterTool, addToolStateSingleSlice, clearCornerstoneElements, syncToolStack, updateStackToolState, setSegmentationConfig, csToolsUpdateStack, initializeCSTools, setToolsStyle, addDefaultTools, addTool, setToolActive, setToolDisabled, setToolEnabled, setToolPassive, DEFAULT_TOOLS, dvTools, getDefaultToolsByType, setDefaultToolsProps, registerExternalTool, addMouseKeyHandlers, removeMouseKeyHandlers, initSegmentationModule, addSegmentationMask, setActiveLabelmap, setActiveSegment, undoLastStroke, redoLastStroke, setBrushProps, hexToRgb, rgbToHex, clearSegmentationState, deleteMask, enableBrushTool, disableBrushTool, toggleContourMode, toggleVisibility, getActiveLabelmapBuffer, updateTemporalViewportData, logger, setLogLevel };
 export declare const updateLarvitarManager: (...args: any) => any;
 export declare const populateLarvitarManager: (...args: any) => any;
 export declare const getLarvitarManager: (...args: any) => any;