larvitar 2.0.5 → 2.0.7

package/imaging/tools/custom/diameterTool.js

@@ -1,141 +0,0 @@
-/** @module imaging/tools/custom/diameterTool
- *  @desc  This file provides functionalities for
- *         a custom diameter cornestone tool
- */
-
-// external libraries
-import csTools from "cornerstone-tools";
-const BidirectionalTool = csTools.BidirectionalTool;
-import { each } from "lodash";
-
-// internal libraries
-import { addToolStateSingleSlice } from "../../imageTools";
-
-/**
- * @public
- * @class DiameterTool
- * @memberof Tools.Annotation
- * @classdesc Create and position an annotation that measures the
- * length and width of a region.
- * @extends Tools.Base.BaseAnnotationTool
- */
-
-export class DiameterTool extends BidirectionalTool {
-  constructor(props) {
-    const defaultProps = {
-      name: "Diameter",
-      isBeenModified: false,
-      lastData: null
-    };
-
-    super(props, defaultProps);
-
-    this.name = "Diameter";
-
-    this.initializeTool(props.dataArray, "cmprAxial", props.seriesId);
-  }
-
-  initializeTool(dataArray, elementId, seriesId) {
-    let element = document.getElementById(elementId);
-
-    each(dataArray, singleData => {
-      let data = {
-        toolType: "Diameter",
-        name: singleData.id.toString(),
-        isCreating: true,
-        visible: true,
-        active: false,
-        invalidated: false,
-        handles: {
-          start: {
-            x: singleData.x1,
-            y: singleData.y1,
-            index: 0,
-            drawnIndependently: false,
-            allowedOutsideImage: false,
-            highlight: true,
-            active: false
-          },
-          end: {
-            x: singleData.x2,
-            y: singleData.y2,
-            index: 1,
-            drawnIndependently: false,
-            allowedOutsideImage: false,
-            highlight: true,
-            active: false
-          },
-          perpendicularStart: {
-            x: singleData.x3,
-            y: singleData.y3,
-            index: 2,
-            drawnIndependently: false,
-            allowedOutsideImage: false,
-            highlight: true,
-            active: false,
-            locked: false
-          },
-          perpendicularEnd: {
-            x: singleData.x4,
-            y: singleData.y4,
-            index: 3,
-            drawnIndependently: false,
-            allowedOutsideImage: false,
-            highlight: true,
-            active: false
-          },
-          textBox: {
-            x: singleData.value_max,
-            y: singleData.value_min,
-            index: null,
-            drawnIndependently: true,
-            allowedOutsideImage: true,
-            highlight: false,
-            active: false,
-            hasMoved: true,
-            movesIndependently: false,
-            hasBoundingBox: true,
-            boundingBox: {
-              width: 59.6484375,
-              height: 47,
-              left: 165.02487562189057,
-              top: 240.53482587064684
-            }
-          }
-        },
-        longestDiameter: singleData.value_max.toString(),
-        shortestDiameter: singleData.value_min.toString()
-      };
-
-      let sliceNumber = singleData.slice;
-
-      // add to master viewport
-      addToolStateSingleSlice(element, this.name, data, sliceNumber, seriesId);
-    });
-
-    csTools.external.cornerstone.updateImage(element);
-  }
-
-  passiveCallback(element) {
-    element.addEventListener(
-      "cornerstonetoolsmeasurementmodified",
-      this.measureOnGoingCallback
-    );
-  }
-
-  measureOnGoingCallback(event) {
-    if (!this.isBeenModified) {
-      event.target.addEventListener("mouseup", function (evt) {
-        this.__proto__.measureEndCallback(evt);
-      });
-    }
-    this.isBeenModified = true;
-    this.lastData = event.detail.measurementData;
-  }
-
-  measureEndCallback(event) {
-    event.element.removeEventListener("mouseup", this.measureEndCallback);
-    this.isBeenModified = false;
-    this.lastData = null;
-  }
-}

package/imaging/tools/custom/editMaskTool.js

@@ -1,141 +0,0 @@
-/** @module imaging/tools/custom/editMaskTool
- *  @desc  This file provides functionalities for
- *         a custom mask cornestone tool
- */
-
-// external libraries
-import csTools from "cornerstone-tools";
-const external = csTools.external;
-const BaseBrushTool = csTools.importInternal("base/BaseBrushTool");
-const segmentationUtils = csTools.importInternal("util/segmentationUtils");
-const getCircle = segmentationUtils.getCircle;
-const drawBrushPixels = segmentationUtils.drawBrushPixels;
-const getModule = csTools.getModule;
-const { configuration, setters } = getModule("segmentation");
-
-/**
- * @public
- * @class BrushTool
- * @memberof Tools.Brush
- * @classdesc Tool for drawing segmentations on an image.
- * @extends Tools.Base.BaseBrushTool
- */
-export class EditMaskTool extends BaseBrushTool {
-  constructor(props = {}) {
-    const defaultProps = {
-      name: "EditMask",
-      supportedInteractionTypes: ["Mouse"],
-      configuration: {},
-      mixins: ["renderBrushMixin"]
-    };
-
-    super(props, defaultProps);
-    this.touchDragCallback = this._paint.bind(this);
-
-    this._initializeTool(props.mask, props.initCallback);
-  }
-
-  _initializeTool(mask, callback) {
-    let enabledElement = csTools.external.cornerstone
-      .getEnabledElements()
-      .filter(e => e.element.id == "axial")
-      .pop();
-
-    // TODO improve performances!
-
-    console.time("...typedToNormal");
-    let pixelsNormalArray = Array.prototype.slice.call(mask.data);
-    console.timeEnd("...typedToNormal");
-
-    console.time("...normalToTyped");
-    let pixelData = Uint16Array.from(pixelsNormalArray);
-    console.timeEnd("...normalToTyped");
-
-    let labelmapIndex = 1;
-
-    let segmentsOnLabelmapArray = new Array(mask.sizes[2]).fill([
-      labelmapIndex
-    ]);
-
-    setters.labelmap3DForElement(
-      enabledElement.element,
-      pixelData.buffer,
-      labelmapIndex,
-      [],
-      segmentsOnLabelmapArray,
-      0
-    );
-
-    csTools.external.cornerstone.updateImage(enabledElement.element);
-
-    if (callback) {
-      callback();
-    }
-    // SIMPLE WAY --- AS FALLBACK :
-
-    // labelmap3D.labelmaps2D = [];
-
-    // for (let f = 0; f < 110; f++) {
-    //   let pixels = mask.data.slice(f * 512 * 512, (f + 1) * 512 * 512);
-    //   let pixelsNormalArray = Array.prototype.slice.call(pixels);
-    //   // let pixelData = new Uint16Array();
-    //   let pixelData = Uint16Array.from(pixelsNormalArray);
-    //   labelmap3D.labelmaps2D.push({
-    //     pixelData: pixelData,
-    //     segmentsOnLabelmap: [labelmapIndex]
-    //   });
-    // }
-  }
-
-  activeCallback(element, options) {
-    switch (options.force) {
-      case "delete":
-        this.configuration.alwaysEraseOnClick = true;
-        break;
-      case "add":
-        this.preventCtrl();
-        break;
-      default:
-        this.configuration.alwaysEraseOnClick = false;
-    }
-  }
-
-  preventCtrl() {
-    this.__proto__.__proto__._isCtrlDown = function () {
-      return false;
-    };
-  }
-
-  /**
-   * Paints the data to the labelmap.
-   *
-   * @protected
-   * @param  {Object} evt The data object associated with the event.
-   * @returns {void}
-   */
-  _paint(evt) {
-    const eventData = evt.detail;
-    const { rows, columns } = eventData.image;
-    const { x, y } = eventData.currentPoints.image;
-
-    if (x < 0 || x > columns || y < 0 || y > rows) {
-      return;
-    }
-
-    const radius = configuration.radius;
-    const pointerArray = getCircle(radius, rows, columns, x, y);
-
-    const { labelmap2D, labelmap3D, shouldErase } = this.paintEventData;
-
-    // Draw / Erase the active color.
-    drawBrushPixels(
-      pointerArray,
-      labelmap2D.pixelData,
-      labelmap3D.activeSegmentIndex,
-      columns,
-      shouldErase
-    );
-
-    external.cornerstone.updateImage(evt.detail.element);
-  }
-}