larvitar 2.0.4 → 2.0.6

package/imaging/tools/custom/thresholdsBrushTool.js

@@ -1,161 +0,0 @@
-/** @module imaging/tools/custom/thresholdBrushTool
- *  @desc  This file provides functionalities for
- *         a brush tool with thresholds using a
- *         custom cornestone tool
- */
-
-// external libraries
-import cornerstoneTools from "cornerstone-tools";
-const external = cornerstoneTools.external;
-const BaseBrushTool = cornerstoneTools.importInternal("base/BaseBrushTool");
-const segmentationUtils = cornerstoneTools.importInternal(
-  "util/segmentationUtils"
-);
-const drawBrushPixels = segmentationUtils.drawBrushPixels;
-const getCircle = segmentationUtils.getCircle;
-const segmentationModule = cornerstoneTools.getModule("segmentation");
-
-/**
- * @public
- * @class ThresholdsBrushTool
- * @memberof Tools.Brush
- * @classdesc Tool for drawing segmentations on an image (only pixels inside thresholds)
- * @extends Tools.Base.BaseBrushTool
- */
-export default class ThresholdsBrushTool extends BaseBrushTool {
-  constructor(props = {}) {
-    const defaultProps = {
-      name: "ThresholdsBrush",
-      supportedInteractionTypes: ["Mouse", "Touch"],
-      configuration: {},
-      mixins: ["renderBrushMixin"]
-    };
-
-    super(props, defaultProps);
-
-    this.touchDragCallback = this._paint.bind(this);
-  }
-
-  /**
-   * Paints the data to the labelmap.
-   *
-   * @protected
-   * @param  {Object} evt The data object associated with the event.
-   * @returns {void}
-   */
-  _paint(evt) {
-    const { configuration } = segmentationModule;
-    const eventData = evt.detail;
-    const { rows, columns } = eventData.image;
-    const { x, y } = eventData.currentPoints.image;
-
-    if (x < 0 || x > columns || y < 0 || y > rows) {
-      return;
-    }
-
-    const radius = configuration.radius;
-    const thresholds = configuration.thresholds;
-    const { labelmap2D, labelmap3D, shouldErase } = this.paintEventData;
-
-    let pointerArray = [];
-
-    // threshold should be applied only if painting, not erasing
-    if (shouldErase) {
-      pointerArray = getCircle(radius, rows, columns, x, y);
-    } else {
-      pointerArray = getCircleWithThreshold(
-        eventData.image,
-        radius,
-        thresholds,
-        x,
-        y
-      );
-    }
-
-    // Draw / Erase the active color.
-    drawBrushPixels(
-      pointerArray,
-      labelmap2D.pixelData,
-      labelmap3D.activeSegmentIndex,
-      columns,
-      shouldErase
-    );
-
-    external.cornerstone.updateImage(evt.detail.element);
-  }
-}
-
-/**
- * Gets the pixels within the circle if inside thresholds (included)
- * NOTE: thresholds values must consider slope and intercept (MO value)
- * @method
- * @name getCircleWithThreshold
- *
- * @param  {Object} image         The target image.
- * @param  {number} radius        The radius of the circle.
- * @param  {Array} thresholds     The thresholds array [min, max].
- * @param  {number} [xCoord = 0]  The x-location of the center of the circle.
- * @param  {number} [yCoord = 0]  The y-location of the center of the circle.
- * @returns {Array.number[]}      Array of pixels contained within the circle.
- */
-function getCircleWithThreshold(
-  image,
-  radius,
-  thresholds,
-  xCoord = 0,
-  yCoord = 0
-) {
-  const pixelData = image.getPixelData();
-  const { rows, columns } = image;
-  const x0 = Math.floor(xCoord);
-  const y0 = Math.floor(yCoord);
-  let circleArray = [];
-
-  // if no thresholds, set all pixels range
-  if (!thresholds) {
-    thresholds = [image.minPixelValue, image.maxPixelValue];
-  }
-
-  function isInsideThresholds(v, t) {
-    return v >= t[0] && v <= t[1];
-  }
-
-  if (radius === 1) {
-    let value = pixelData[y0 * rows + x0];
-    let moValue = value * image.slope + image.intercept;
-    if (isInsideThresholds(moValue, thresholds)) {
-      circleArray = [[x0, y0]];
-    }
-    return circleArray;
-  }
-
-  let index = 0;
-
-  for (let y = -radius; y <= radius; y++) {
-    const yCoord = y0 + y;
-
-    if (yCoord > rows || yCoord < 0) {
-      continue;
-    }
-
-    for (let x = -radius; x <= radius; x++) {
-      const xCoord = x0 + x;
-
-      if (xCoord >= columns || xCoord < 0) {
-        continue;
-      }
-
-      let value = pixelData[yCoord * rows + xCoord];
-      let moValue = value * image.slope + image.intercept;
-
-      if (
-        x * x + y * y < radius * radius &&
-        isInsideThresholds(moValue, thresholds)
-      ) {
-        circleArray[index++] = [x0 + x, y0 + y];
-      }
-    }
-  }
-
-  return circleArray;
-}