larvitar 0.20.0 → 1.2.2

package/imaging/{image_store.js → imageStore.js}

@@ -1,4 +1,4 @@
-/** @module imaging/store
+/** @module imaging/imageStore
  *  @desc This file provides functionalities
  *        for data config store.
  */
@@ -171,6 +171,22 @@ class Larvitar_Store {
     }
   }
 
+  /**
+   * Removes all the series from the store
+   * @function resetSeriesIds
+   */
+  resetSeriesIds(seriesId) {
+    if (this.VUEX_STORE) {
+      let dispatch = "resetSeriesIds";
+      let route = this.vuex_module
+        ? this.vuex_module + "/" + dispatch
+        : dispatch;
+      this.vuex_store.dispatch(route, seriesId);
+    } else {
+      delete this.state.series[seriesId];
+    }
+  }
+
   /**
    * Set a value into store
    * @function set
@@ -259,15 +275,16 @@ class Larvitar_Store {
 
 /**
  * Instancing the store
- * @param {Object} vuex_store - The app vuex store [optional]
- * @param {String} vuex_module - The name of the vuex store module, can be null
+ * @param {Object} vuexStore - The app vuex store [optional]
+ * @param {String} vuexModule - The name of the vuex store module, can be null
+ * @param {Boolean} registerModule - If true, the module is registered under Vuex global store
  */
 
-export function initLarvitarStore(vuex_store, vuex_module, registerModule) {
-  if (vuex_store) {
-    larvitar_store = new Larvitar_Store(vuex_store, vuex_module);
+export function initLarvitarStore(vuexStore, vuexModule, registerModule) {
+  if (vuexStore) {
+    larvitar_store = new Larvitar_Store(vuexStore, vuexModule);
     if (registerModule) {
-      vuex_store.registerModule(vuex_module, larvitar);
+      vuexStore.registerModule(vuexModule, larvitar);
     }
   } else {
     larvitar_store = new Larvitar_Store();

package/imaging/{image_tools.js → imageTools.js}

@@ -1,4 +1,4 @@
-/** @module imaging/tools
+/** @module imaging/imageTools
  *  @desc This file provides functionalities for
  *        interacting with cornerstone tools
  */
@@ -9,20 +9,20 @@ import cornerstoneTools from "cornerstone-tools";
 import { each, extend, filter, remove, cloneDeep } from "lodash";
 
 // internal libraries
-import { DEFAULT_TOOLS } from "./tools/tools.default";
-// import { SeedsTool } from "./tools/seedTool";
-import { ContoursTool } from "./tools/contourTool";
-import { EditMaskTool } from "./tools/editMaskTool";
-import { DiameterTool } from "./tools/diameterTool";
+import { DEFAULT_TOOLS } from "./tools/default";
+// import { SeedsTool } from "./tools/custom/seedTool";
+import { ContoursTool } from "./tools/custom/contourTool";
+import { EditMaskTool } from "./tools/custom/editMaskTool";
+import { DiameterTool } from "./tools/custom/diameterTool";
 import { getImageIdFromSlice } from "./loaders/nrrdLoader";
 import { getSeriesDataFromLarvitarManager } from "./loaders/commonLoader";
-import { parseContours } from "./image_contours";
-import { isElement } from "./image_utils";
+import { parseContours } from "./imageContours";
+import { isElement } from "./imageUtils";
 
 /*
  * This module provides the following functions to be exported:
  * csToolsCreateStack(element)
- * addDefaultTools()
+ * addDefaultTools(toolToActivate)
  * clearMeasurements()
  * addContoursTool(rawContours, maskName)
  * addMaskEditingTool(seriesId,mask,setConfig,callback, targetViewport)
@@ -44,11 +44,11 @@ import { isElement } from "./image_utils";
  */
 
 /**
- * Add all default tools, as listed in tools.default.js
+ * Add all default tools, as listed in tools/default.js
  * @function addDefaultTools
  * @deprecated (OBSOLETE)
  */
-export const addDefaultTools = function (toolToActivate, cb) {
+export const addDefaultTools = function (toolToActivate) {
   // for each default tool
   each(DEFAULT_TOOLS, tool => {
     // check if already added
@@ -99,10 +99,6 @@ export const addDefaultTools = function (toolToActivate, cb) {
     allowSkipping: false, // default true
     invert: false
   });
-
-  if (cb) {
-    cb();
-  }
 };
 
 /**
@@ -146,8 +142,8 @@ export const addContoursTool = function (rawContours, maskName) {
  * Add mask editing tool
  * @function addMaskEditingTool
  * @param {Array} mask - The mask data.
- * @param {String} targetViewport - The target hmtl element id.
  * @param {Function} callback - The tool initialization callback
+ * @param {String} targetViewport - The target hmtl element id.
  */
 export const addMaskEditingTool = function (mask, callback, targetViewport) {
   let enabledElements = cornerstone.getEnabledElements();
@@ -257,10 +253,10 @@ export const addSeedsTool = function (preLoadSeeds, initViewport) {
 };
 
 /**
- * Delete all measurements from tools state, for tools that have the "cleaneable" prop set to true in tools.default.js
+ * Delete all measurements from tools state, for tools that have the "cleaneable" prop set to true in tools/default.js
  * @function clearMeasurements
  */
-export const clearMeasurements = function (cb) {
+export const clearMeasurements = function () {
   let enabledElements = cornerstone.getEnabledElements();
   let clenableTools = filter(DEFAULT_TOOLS, "cleanable");
 
@@ -272,17 +268,13 @@ export const clearMeasurements = function (cb) {
   each(enabledElements, el => {
     cornerstone.updateImage(el.element);
   });
-
-  if (cb) {
-    cb();
-  }
 };
 
 /**
  * Set Tool "active" on all elements (ie, rendered and manipulable) & refresh cornerstone elements
  * @function setToolActive
  * @param {String} toolName - The tool name.
- * @param {Object} options - The custom options. @default from tools.default.js
+ * @param {Object} options - The custom options. @default from tools/default.js
  * @param {String} activeViewport - The active viewport (if "all", viewports array will be used)
  * @param {Array} viewports - The hmtl element id to be used for tool initialization.
  */

package/imaging/{image_utils.js → imageUtils.js}

@@ -1,4 +1,4 @@
-/** @module imaging/utils
+/** @module imaging/imageUtils
  *  @desc This file provides utility functions for
  *        manipulating image pixels and image metadata
  */

package/imaging/loaders/commonLoader.js

@@ -6,7 +6,7 @@
 // external libraries
 import cornerstoneWADOImageLoader from "cornerstone-wado-image-loader";
 import { each } from "lodash";
-import { updateLoadedStack } from "../image_loading";
+import { updateLoadedStack } from "../imageLoading";
 
 // internal libraries
 import { buildMultiFrameImage, clearMultiFrameCache } from "./multiframeLoader";

package/imaging/loaders/dicomLoader.js

@@ -4,7 +4,7 @@
  */
 
 // internal libraries
-import { loadAndCacheImages } from "../image_rendering";
+import { loadAndCacheImages } from "../imageRendering";
 
 /*
  * This module provides the following functions to be exported:

package/imaging/loaders/fileLoader.js

@@ -8,8 +8,8 @@ import cornerstoneFileImageLoader from "cornerstone-file-image-loader";
 import { has } from "lodash";
 
 // internal libraries
-import { clearImageCache } from "../image_rendering";
-import { clearCornerstoneElements } from "../image_tools";
+import { clearImageCache } from "../imageRendering";
+import { clearCornerstoneElements } from "../imageTools";
 
 // global variables
 export var fileManager = {};

package/imaging/loaders/multiframeLoader.js

@@ -1,3 +1,7 @@
+/** @module loaders/multiframeLoader
+ *  @desc This file is a custom wado loader for multiframe images
+ */
+
 // external libraries
 import cornerstoneWADOImageLoader from "cornerstone-wado-image-loader";
 import { each, range } from "lodash";
@@ -8,7 +12,7 @@ import {
   getLarvitarImageTracker,
   getLarvitarManager
 } from "./commonLoader";
-import { dumpDataSet } from "../image_parsing";
+import { parseDataSet } from "../imageParsing";
 
 // global module variables
 let customImageLoaderCounter = 0;
@@ -84,7 +88,7 @@ export const buildMultiFrameImage = function (seriesId, serie) {
       // EXTRACT MULTIFRAME METADATA (x52009230) Per-frame Functional Groups Sequence
       let frameMetadata = { ...metadata };
 
-      dumpDataSet(dataSet, frameMetadata, {
+      parseDataSet(dataSet, frameMetadata, {
         tags: ["x52009230"],
         frameId: frameNumber
       });

package/imaging/loaders/nrrdLoader.js

@@ -14,7 +14,7 @@ import {
   getNormalOrientation,
   getPixelRepresentation,
   getTypedArrayFromDataType
-} from "../image_utils";
+} from "../imageUtils";
 
 import {
   getImageFrame,
@@ -243,7 +243,11 @@ export const loadNrrdImage = function (imageId) {
  * @param {String} seriesId The series id
  * @return {String} image id
  */
-export function getImageIdFromSlice(sliceNumber, orientation, seriesId) {
+export const getImageIdFromSlice = function (
+  sliceNumber,
+  orientation,
+  seriesId
+) {
   var prefix = "nrrdLoader://";
   var serieImageTracker;
   let imageTracker = getLarvitarImageTracker();
@@ -266,7 +270,7 @@ export function getImageIdFromSlice(sliceNumber, orientation, seriesId) {
   var imageId = prefix.concat(imageIndex.toString());
 
   return imageId;
-}
+};
 
 /**
  * Retrieve slice number for a the given orientation
@@ -277,7 +281,7 @@ export function getImageIdFromSlice(sliceNumber, orientation, seriesId) {
  * @param {String} seriesId The series id
  * @return {Integer} The image slice number
  */
-export function getSliceNumberFromImageId(imageId, orientation) {
+export const getSliceNumberFromImageId = function (imageId, orientation) {
   let imageTracker = getLarvitarImageTracker();
   var firstImageId = findKey(imageTracker, entry => {
     return entry[1] == orientation;
@@ -289,7 +293,7 @@ export function getSliceNumberFromImageId(imageId, orientation) {
     parseInt(imageNumber) - parseInt(firstImageId.split("//").pop());
 
   return imageIndex;
-}
+};
 
 /**
  * Get series dimension for each view
@@ -297,7 +301,7 @@ export function getSliceNumberFromImageId(imageId, orientation) {
  * @function getNrrdSerieDimensions
  * @return {Object} Series dimension for each view
  */
-export function getNrrdSerieDimensions() {
+export const getNrrdSerieDimensions = function () {
   let imageTracker = getLarvitarImageTracker();
   var dim_axial = filter(imageTracker, img => {
     return img[1] == "axial";
@@ -314,7 +318,7 @@ export function getNrrdSerieDimensions() {
     coronal: [dim_sagittal.length, dim_axial.length, dim_coronal.length],
     sagittal: [dim_coronal.length, dim_axial.length, dim_sagittal.length]
   };
-}
+};
 
 /* Internal functions */
 

package/imaging/tools/{contourTool.js → custom/contourTool.js}

@@ -1,10 +1,16 @@
+/** @module imaging/tools/custom/contourTool
+ *  @desc  This file provides functionalities for
+ *         rendering segmentation contours with a
+ *         custom cornestone tool
+ */
+
 // external libraries
 import cornerstone from "cornerstone-core";
 import csTools from "cornerstone-tools";
 import { each, map } from "lodash";
 
 // internal libraries
-import { addToolStateSingleSlice } from "../image_tools";
+import { addToolStateSingleSlice } from "../../imageTools";
 
 // cornerstone tools imports
 const external = csTools.external;
@@ -99,19 +105,16 @@ export class ContoursTool extends BaseAnnotationTool {
     this._drawingMouseMoveCallback = this._drawingMouseMoveCallback.bind(this);
     this._drawingMouseDragCallback = this._drawingMouseDragCallback.bind(this);
     this._drawingMouseUpCallback = this._drawingMouseUpCallback.bind(this);
-    this._drawingMouseDoubleClickCallback = this._drawingMouseDoubleClickCallback.bind(
-      this
-    );
+    this._drawingMouseDoubleClickCallback =
+      this._drawingMouseDoubleClickCallback.bind(this);
     this._editMouseUpCallback = this._editMouseUpCallback.bind(this);
     this._editMouseDragCallback = this._editMouseDragCallback.bind(this);
 
-    this._drawingTouchStartCallback = this._drawingTouchStartCallback.bind(
-      this
-    );
+    this._drawingTouchStartCallback =
+      this._drawingTouchStartCallback.bind(this);
     this._drawingTouchDragCallback = this._drawingTouchDragCallback.bind(this);
-    this._drawingDoubleTapClickCallback = this._drawingDoubleTapClickCallback.bind(
-      this
-    );
+    this._drawingDoubleTapClickCallback =
+      this._drawingDoubleTapClickCallback.bind(this);
     this._editTouchDragCallback = this._editTouchDragCallback.bind(this);
 
     this.throttledUpdateCachedStats = throttle(this.updateCachedStats, 110);
@@ -1340,11 +1343,12 @@ export class ContoursTool extends BaseAnnotationTool {
 
     data.canComplete = false;
 
-    const mouseAtOriginHandle = this._isDistanceSmallerThanCompleteSpacingCanvas(
-      element,
-      points[0],
-      mousePoint
-    );
+    const mouseAtOriginHandle =
+      this._isDistanceSmallerThanCompleteSpacingCanvas(
+        element,
+        points[0],
+        mousePoint
+      );
 
     if (
       mouseAtOriginHandle &&
@@ -1398,11 +1402,12 @@ export class ContoursTool extends BaseAnnotationTool {
     const mousePoint = config.mouseLocation.handles.start;
     const points = data.handles.points;
 
-    const mouseAtOriginHandle = this._isDistanceSmallerThanCompleteSpacingCanvas(
-      element,
-      points[0],
-      mousePoint
-    );
+    const mouseAtOriginHandle =
+      this._isDistanceSmallerThanCompleteSpacingCanvas(
+        element,
+        points[0],
+        mousePoint
+      );
 
     if (mouseAtOriginHandle) {
       data.canComplete = true;

package/imaging/tools/{diameterTool.js → custom/diameterTool.js}

@@ -1,10 +1,16 @@
-import csTools from "cornerstone-tools";
+/** @module imaging/tools/custom/diameterTool
+ *  @desc  This file provides functionalities for
+ *         a custom diameter cornestone tool
+ */
 
+// external libraries
+import csTools from "cornerstone-tools";
 const BidirectionalTool = csTools.BidirectionalTool;
-
-import { addToolStateSingleSlice } from "../image_tools";
 import { each } from "lodash";
 
+// internal libraries
+import { addToolStateSingleSlice } from "../../imageTools";
+
 /**
  * @public
  * @class DiameterTool

package/imaging/tools/{editMaskTool.js → custom/editMaskTool.js}

@@ -1,3 +1,9 @@
+/** @module imaging/tools/custom/editMaskTool
+ *  @desc  This file provides functionalities for
+ *         a custom mask cornestone tool
+ */
+
+// external libraries
 import csTools from "cornerstone-tools";
 const external = csTools.external;
 const BaseBrushTool = csTools.importInternal("base/BaseBrushTool");
@@ -95,7 +101,7 @@ export class EditMaskTool extends BaseBrushTool {
   }
 
   preventCtrl() {
-    this.__proto__.__proto__._isCtrlDown = function() {
+    this.__proto__.__proto__._isCtrlDown = function () {
       return false;
     };
   }

package/imaging/tools/{polylineScissorsTool.js → custom/polylineScissorsTool.js}

@@ -1,14 +1,21 @@
+/** @module imaging/tools/custom/polygonScissorsTool
+ *  @desc  This file provides functionalities for
+ *         a custom polyline scissors cornestone tool
+ */
+
+// external libraries
 import cornerstoneTools from "cornerstone-tools";
+const BaseTool = cornerstoneTools.importInternal("base/BaseTool");
+const { rectangleRoiCursor } = cornerstoneTools.importInternal("tools/cursors");
+
+// internal libraries
 import {
   fillInsideFreehand,
   fillOutsideFreehand,
   eraseOutsideFreehand,
   eraseInsideFreehand
-} from "./strategies"; // cannot import strategies in other way 🤷
-import polygonSegmentationMixin from "./polygonSegmentationMixin";
-
-const BaseTool = cornerstoneTools.importInternal("base/BaseTool");
-const { rectangleRoiCursor } = cornerstoneTools.importInternal("tools/cursors");
+} from "../strategies"; // cannot import strategies in other way 🤷
+import polygonSegmentationMixin from "../polygonSegmentationMixin";
 
 // Register custom mixin
 cornerstoneTools.register(

package/imaging/tools/{seedTool.js → custom/seedTool.js}

@@ -3,9 +3,9 @@
 // import { each, cloneDeep } from "lodash";
 
 // // internal libraries
-// import { remapVoxel } from "../image_utils";
-// import { addToolStateSingleSlice, setToolEnabled } from "../image_tools";
-// import { getSliceNumberFromImageId } from "../loaders/nrrdLoader";
+// import { remapVoxel } from "../../imageUtils";
+// import { addToolStateSingleSlice, setToolEnabled } from "../../imageTools";
+// import { getSliceNumberFromImageId } from "../../loaders/nrrdLoader";
 
 // // cornerstone tools imports
 // const BaseAnnotationTool = csTools.importInternal("base/BaseAnnotationTool");

package/imaging/tools/{thresholdsBrushTool.js → custom/thresholdsBrushTool.js}

@@ -1,5 +1,11 @@
-import cornerstoneTools from "cornerstone-tools";
+/** @module imaging/tools/custom/thresholdBrushTool
+ *  @desc  This file provides functionalities for
+ *         a brush tool with thresholds using a
+ *         custom cornestone tool
+ */
 
+// external libraries
+import cornerstoneTools from "cornerstone-tools";
 const external = cornerstoneTools.external;
 const BaseBrushTool = cornerstoneTools.importInternal("base/BaseBrushTool");
 const segmentationUtils = cornerstoneTools.importInternal(

package/imaging/tools/{tools.default.js → default.js}

@@ -1,3 +1,10 @@
+/** @module imaging/tools/default
+ *  @desc  This file provides definitions
+ *         for default tools
+ */
+
+// external libraries
+
 /** @module tools/default */
 
 /* DEFINE DEFAULT TOOLS
@@ -19,8 +26,8 @@
  */
 
 import { filter, isArray } from "lodash";
-import ThresholdsBrushTool from "./thresholdsBrushTool";
-import PolylineScissorsTool from "./polylineScissorsTool";
+import ThresholdsBrushTool from "./custom/thresholdsBrushTool";
+import PolylineScissorsTool from "./custom/polylineScissorsTool";
 
 /**
  * These tools are added with `addDefaultTools()`

package/imaging/tools/{tools.interaction.js → interaction.js}

@@ -1,12 +1,19 @@
-import { DEFAULT_MOUSE_KEYS } from "./tools.default";
-import { setToolActive } from "./tools.main";
-import { isElement } from "../image_utils";
-import { larvitar_store } from "../image_store";
-import { updateViewportData } from "../image_rendering";
+/** @module imaging/tools/interaction
+ *  @desc  This file provides functionalities for
+ *         tools interactions
+ */
 
+// external libraries
 import { throttle } from "lodash";
 import * as keyCodes from "keycode-js";
 
+// internal libraries
+import { DEFAULT_MOUSE_KEYS } from "./default";
+import { setToolActive } from "./main";
+import { isElement } from "../imageUtils";
+import { larvitar_store } from "../imageStore";
+import { updateViewportData } from "../imageRendering";
+
 /**
  * TOOLS INTERACTIONS TODOS:
  * - enable touch controls
@@ -21,7 +28,7 @@ import * as keyCodes from "keycode-js";
  * - "restore previous active tool" instead of passed "default" tool
  * - manage left button (an idea could be to cycle over object keys for both buttons)
  * - possibility to change modifier keys
- * @param {Object} config - see tools.default
+ * @param {Object} config - see tools/default
  * @param {Array} viewports - The hmtl element ids to be used for tool activation.
  */
 

package/imaging/tools/{tools.io.js → io.js}

@@ -1,9 +1,16 @@
+/** @module imaging/tools/io
+ *  @desc  This file provides functionalities for
+ *         tools input/output
+ */
+
+// external libraries
 import cornerstone from "cornerstone-core";
 import cornerstoneTools from "cornerstone-tools";
 import { each, map, assign, invert } from "lodash";
 import { unparse } from "papaparse";
 
-import { setToolEnabled } from "../image_tools";
+// internal libraries
+import { setToolEnabled } from "../imageTools";
 
 // DEV
 // import { saved_state_2 } from "./cstools_state_example.js";
@@ -13,7 +20,7 @@ import { setToolEnabled } from "../image_tools";
  * Load annotation from json object
  * @param {Object} jsonData - The previously saved tools state
  */
-export const loadAnnotations = function(jsonData) {
+export const loadAnnotations = function (jsonData) {
   // DEV
   // if (!jsonData) {
   //   jsonData = saved_state_2;
@@ -52,8 +59,9 @@ export const loadAnnotations = function(jsonData) {
  * @param {bool} download - True to download json
  * @param {string} filename - The json file name, @default state.json
  */
-export const saveAnnotations = function(toDownload, filename = "state.json") {
-  let currentToolState = cornerstoneTools.globalImageIdSpecificToolStateManager.saveToolState();
+export const saveAnnotations = function (toDownload, filename = "state.json") {
+  let currentToolState =
+    cornerstoneTools.globalImageIdSpecificToolStateManager.saveToolState();
   if (toDownload) {
     // Convert JSON Array to string.
     var json_string = JSON.stringify(currentToolState);
@@ -67,11 +75,12 @@ export const saveAnnotations = function(toDownload, filename = "state.json") {
  * Save annotation from current stack, download as csv file
  * containing only useful informations for user
  */
-export const exportAnnotations = function(
+export const exportAnnotations = function (
   fileManager,
   filename = "annotations.csv"
 ) {
-  let currentToolState = cornerstoneTools.globalImageIdSpecificToolStateManager.saveToolState();
+  let currentToolState =
+    cornerstoneTools.globalImageIdSpecificToolStateManager.saveToolState();
   let csvdata = generateCSV(fileManager, currentToolState);
   let csvstring = unparse(csvdata);
   download(csvstring, filename);

package/imaging/tools/{tools.main.js → main.js}

@@ -1,29 +1,30 @@
+/** @module imaging/tools/main
+ *  @desc  This file provides functionalities
+ *         for initializing tools and stacks
+ */
+
 // external libraries
 import cornerstone from "cornerstone-core";
 import cornerstoneTools from "cornerstone-tools/dist/cornerstoneTools.js";
 import cornerstoneMath from "cornerstone-math";
 import Hammer from "hammerjs";
-
 import { each, extend } from "lodash";
 
-import {
-  saveAnnotations,
-  loadAnnotations,
-  exportAnnotations
-} from "./tools.io";
+// internal libraries
+import { saveAnnotations, loadAnnotations, exportAnnotations } from "./io";
 import {
   DEFAULT_TOOLS,
   DEFAULT_STYLE,
   DEFAULT_SETTINGS,
   dvTools
-} from "./tools.default";
-import { larvitar_store } from "../image_store";
+} from "./default";
+import { larvitar_store } from "../imageStore";
 
 /**
  * Initialize cornerstone tools with default configuration (extended with custom configuration)
  * @function initializeCSTools
- * @param {Object} settings - the settings object (see tools.default.js)
- * @param {Object} settings - the style object (see tools.default.js)
+ * @param {Object} settings - the settings object (see tools/default.js)
+ * @param {Object} settings - the style object (see tools/default.js)
  * @example larvitar.initializeCSTools({showSVGCursors:false}, {color: "0000FF"});
  */
 const initializeCSTools = function (settings, style) {
@@ -137,7 +138,7 @@ const addTool = function (toolName, customConfig, targetElementId) {
 };
 
 /**
- * Add all default tools, as listed in tools.default.js
+ * Add all default tools, as listed in tools/default.js
  * @function addDefaultTools
  */
 export const addDefaultTools = function (elementId) {
@@ -200,7 +201,7 @@ function tryUpdateImage(element) {
  * Set Tool "active" on all elements (ie, rendered and manipulable) & refresh cornerstone elements
  * @function setToolActive
  * @param {String} toolName - The tool name.
- * @param {Object} options - The custom options. @default from tools.default.js
+ * @param {Object} options - The custom options. @default from tools/default.js
  * @param {Array} viewports - The hmtl element id to be used for tool initialization.
  * @param {Boolean} doNotSetInStore - Flag to avoid setting in store (useful on tools initialization eg in addDefaultTools). NOTE: This is just a hack, we must rework tools/ui sync.
  */
@@ -327,7 +328,7 @@ const setToolPassive = function (toolName, viewports) {
 /**
  * Set cornerstone tools custom configuration (extend default configuration)
  * @function setToolsStyle
- * @param {Object} style - the style object (see tools.defaults.js)
+ * @param {Object} style - the style object (see tools/defaults.js)
  */
 const setToolsStyle = function (style) {
   extend(DEFAULT_STYLE, style);

package/imaging/tools/polygonSegmentationMixin.js

@@ -1,5 +1,10 @@
-import cornerstoneTools from "cornerstone-tools";
+/** @module imaging/tools/polygonSegmentationMixin
+ *  @desc  This file ovverides `freehandSegmentationMixin`'s
+ *         `renderToolData` method
+ */
 
+// external libraries
+import cornerstoneTools from "cornerstone-tools";
 const external = cornerstoneTools.external;
 const draw = cornerstoneTools.importInternal("drawing/draw");
 const drawJoinedLines = cornerstoneTools.importInternal(
@@ -147,9 +152,8 @@ function _applyStrategy(evt) {
   const points = this.handles.points;
   const { element } = evt.detail;
 
-  const { labelmap2D, labelmap3D, currentImageIdIndex } = getters.labelmap2D(
-    element
-  );
+  const { labelmap2D, labelmap3D, currentImageIdIndex } =
+    getters.labelmap2D(element);
 
   const pixelData = labelmap2D.pixelData;
   const previousPixeldata = pixelData.slice();