labgate 0.5.9 → 0.5.11

package/dist/lib/cluster-mcp.d.ts

@@ -0,0 +1,33 @@
+/**
+ * LabGate Cluster MCP Server
+ *
+ * Read-only cluster discovery tools for HPC users:
+ * - Partition overview and limits
+ * - Queue pressure summary
+ * - Module discovery helper
+ *
+ * Usage: node dist/lib/cluster-mcp.js
+ */
+export interface ClusterPartition {
+    partition: string;
+    default: boolean;
+    availability: string;
+    time_limit: string;
+    nodes: number | null;
+    cpu_state: string;
+    state: string;
+}
+export interface QueuePressureRow {
+    partition: string;
+    total: number;
+    pending: number;
+    running: number;
+    states: Record<string, number>;
+}
+export declare function parseSinfoOutput(output: string): ClusterPartition[];
+export declare function parseScontrolPartitionOutput(output: string): Array<Record<string, string>>;
+export declare function summarizeQueuePressure(output: string): {
+    totals: Record<string, number>;
+    partitions: QueuePressureRow[];
+};
+export declare function main(): Promise<void>;

package/dist/lib/cluster-mcp.js

@@ -0,0 +1,313 @@
+"use strict";
+/**
+ * LabGate Cluster MCP Server
+ *
+ * Read-only cluster discovery tools for HPC users:
+ * - Partition overview and limits
+ * - Queue pressure summary
+ * - Module discovery helper
+ *
+ * Usage: node dist/lib/cluster-mcp.js
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.parseSinfoOutput = parseSinfoOutput;
+exports.parseScontrolPartitionOutput = parseScontrolPartitionOutput;
+exports.summarizeQueuePressure = summarizeQueuePressure;
+exports.main = main;
+const child_process_1 = require("child_process");
+const util_1 = require("util");
+const mcp_js_1 = require("@modelcontextprotocol/sdk/server/mcp.js");
+const stdio_js_1 = require("@modelcontextprotocol/sdk/server/stdio.js");
+const zod_1 = require("zod");
+const execFileAsync = (0, util_1.promisify)(child_process_1.execFile);
+function asJson(payload) {
+    return {
+        content: [{ type: 'text', text: JSON.stringify(payload, null, 2) }],
+    };
+}
+function asError(text) {
+    return {
+        content: [{ type: 'text', text }],
+        isError: true,
+    };
+}
+function cleanPartitionName(raw) {
+    const trimmed = String(raw || '').trim();
+    if (!trimmed)
+        return { partition: '', isDefault: false };
+    return {
+        partition: trimmed.replace('*', ''),
+        isDefault: trimmed.includes('*'),
+    };
+}
+async function runCommand(command, args, timeoutMs = 10_000) {
+    try {
+        const { stdout, stderr } = await execFileAsync(command, args, {
+            timeout: timeoutMs,
+            maxBuffer: 2 * 1024 * 1024,
+            env: process.env,
+        });
+        return {
+            ok: true,
+            stdout: String(stdout || ''),
+            stderr: String(stderr || ''),
+        };
+    }
+    catch (err) {
+        const stdout = err?.stdout ? String(err.stdout) : '';
+        const stderr = err?.stderr ? String(err.stderr) : '';
+        if (err?.code === 'ENOENT') {
+            return {
+                ok: false,
+                stdout,
+                stderr,
+                error: `Command not found: ${command}. This tool requires a SLURM login/node environment.`,
+            };
+        }
+        if (err?.killed) {
+            return {
+                ok: false,
+                stdout,
+                stderr,
+                error: `Command timed out after ${timeoutMs}ms: ${command} ${args.join(' ')}`,
+            };
+        }
+        return {
+            ok: false,
+            stdout,
+            stderr,
+            error: err?.message || `Command failed: ${command}`,
+        };
+    }
+}
+function parseSinfoOutput(output) {
+    const rows = [];
+    for (const line of output.split('\n')) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        const parts = trimmed.split('|');
+        if (parts.length < 6)
+            continue;
+        const partInfo = cleanPartitionName(parts[0]);
+        if (!partInfo.partition)
+            continue;
+        const nodesRaw = parseInt(parts[3], 10);
+        rows.push({
+            partition: partInfo.partition,
+            default: partInfo.isDefault,
+            availability: parts[1]?.trim() || 'unknown',
+            time_limit: parts[2]?.trim() || 'unknown',
+            nodes: Number.isFinite(nodesRaw) ? nodesRaw : null,
+            cpu_state: parts[4]?.trim() || 'unknown',
+            state: parts[5]?.trim() || 'unknown',
+        });
+    }
+    return rows;
+}
+function parseKeyValueTokens(line) {
+    const out = {};
+    for (const token of line.split(/\s+/)) {
+        const idx = token.indexOf('=');
+        if (idx <= 0)
+            continue;
+        const key = token.slice(0, idx);
+        const value = token.slice(idx + 1);
+        out[key] = value;
+    }
+    return out;
+}
+function parseScontrolPartitionOutput(output) {
+    const rows = [];
+    for (const line of output.split('\n')) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        rows.push(parseKeyValueTokens(trimmed));
+    }
+    return rows;
+}
+function summarizeQueuePressure(output) {
+    const totals = {};
+    const byPartition = new Map();
+    for (const line of output.split('\n')) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        const [stateRaw, partitionRaw] = trimmed.split('|');
+        const state = String(stateRaw || 'UNKNOWN').trim().toUpperCase();
+        const partInfo = cleanPartitionName(partitionRaw || 'unknown');
+        const partition = partInfo.partition || 'unknown';
+        totals[state] = (totals[state] || 0) + 1;
+        let row = byPartition.get(partition);
+        if (!row) {
+            row = {
+                partition,
+                total: 0,
+                pending: 0,
+                running: 0,
+                states: {},
+            };
+            byPartition.set(partition, row);
+        }
+        row.total += 1;
+        row.states[state] = (row.states[state] || 0) + 1;
+        if (state === 'PENDING')
+            row.pending += 1;
+        if (state === 'RUNNING' || state === 'COMPLETING')
+            row.running += 1;
+    }
+    const partitions = Array.from(byPartition.values()).sort((a, b) => b.pending - a.pending || b.total - a.total || a.partition.localeCompare(b.partition));
+    return { totals, partitions };
+}
+function sanitizeModulePattern(pattern) {
+    if (!pattern)
+        return '';
+    if (!/^[a-zA-Z0-9._+:/\-*]+$/.test(pattern))
+        return null;
+    return pattern;
+}
+function parseModuleAvailOutput(output, limit) {
+    const modules = [];
+    for (const line of output.split('\n')) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        // Drop common non-module noise from environment-modules/Lmod output.
+        if (trimmed.endsWith(':') ||
+            trimmed.startsWith('---') ||
+            trimmed.startsWith('Module') ||
+            trimmed.startsWith('Lmod') ||
+            trimmed.startsWith('Use "') ||
+            trimmed.startsWith('No module')) {
+            continue;
+        }
+        modules.push(trimmed);
+        if (modules.length >= limit)
+            break;
+    }
+    return modules;
+}
+async function main() {
+    const server = new mcp_js_1.McpServer({
+        name: 'labgate-cluster',
+        version: '1.0.0',
+    }, {
+        capabilities: {
+            tools: {},
+        },
+        instructions: 'LabGate cluster helper tools. Use these tools to inspect SLURM partitions, ' +
+            'queue pressure, and available software modules on HPC systems.',
+    });
+    server.registerTool('get_cluster_partitions', {
+        title: 'Get Cluster Partitions',
+        description: 'List SLURM partitions with availability, time limits, node counts, and current partition state.',
+        inputSchema: {
+            partition: zod_1.z.string().optional().describe('Optional partition filter (substring, case-insensitive).'),
+        },
+    }, async ({ partition }) => {
+        const result = await runCommand('sinfo', ['-h', '-o', '%P|%a|%l|%D|%C|%T']);
+        if (!result.ok)
+            return asError(result.error || result.stderr || 'sinfo failed');
+        let partitions = parseSinfoOutput(result.stdout);
+        const filter = String(partition || '').trim().toLowerCase();
+        if (filter) {
+            partitions = partitions.filter((p) => p.partition.toLowerCase().includes(filter));
+        }
+        if (partitions.length === 0) {
+            return asJson({ partitions: [], message: 'No partitions matched the filter.' });
+        }
+        return asJson({ partitions, count: partitions.length });
+    });
+    server.registerTool('get_partition_limits', {
+        title: 'Get Partition Limits',
+        description: 'Show partition policy limits such as MaxTime, node/cpu/memory constraints, and state.',
+        inputSchema: {
+            partition: zod_1.z.string().optional().describe('Optional exact partition name.'),
+        },
+    }, async ({ partition }) => {
+        const result = await runCommand('scontrol', ['show', 'partition', '-o']);
+        if (!result.ok)
+            return asError(result.error || result.stderr || 'scontrol failed');
+        const rows = parseScontrolPartitionOutput(result.stdout);
+        const requested = String(partition || '').trim();
+        const filtered = requested
+            ? rows.filter((row) => String(row.PartitionName || '') === requested)
+            : rows;
+        const mapped = filtered.map((row) => ({
+            partition: row.PartitionName || null,
+            default: row.Default === 'YES' || row.Default === 'Y',
+            state: row.State || null,
+            max_time: row.MaxTime || null,
+            min_nodes: row.MinNodes || null,
+            max_nodes: row.MaxNodes || null,
+            max_cpus_per_node: row.MaxCPUsPerNode || null,
+            max_mem_per_cpu: row.MaxMemPerCPU || null,
+            max_mem_per_node: row.MaxMemPerNode || null,
+        }));
+        if (mapped.length === 0) {
+            return asJson({ partitions: [], message: requested ? `Partition not found: ${requested}` : 'No partition data available.' });
+        }
+        return asJson({ partitions: mapped, count: mapped.length });
+    });
+    server.registerTool('get_queue_pressure', {
+        title: 'Get Queue Pressure',
+        description: 'Summarize SLURM queue load by partition (pending/running counts and state breakdown).',
+        inputSchema: {
+            partition: zod_1.z.string().optional().describe('Optional exact partition name.'),
+        },
+    }, async ({ partition }) => {
+        const result = await runCommand('squeue', ['-h', '-o', '%T|%P']);
+        if (!result.ok)
+            return asError(result.error || result.stderr || 'squeue failed');
+        const summary = summarizeQueuePressure(result.stdout);
+        const requested = String(partition || '').trim();
+        const partitions = requested
+            ? summary.partitions.filter((p) => p.partition === requested)
+            : summary.partitions;
+        return asJson({
+            totals: summary.totals,
+            partitions,
+            count: partitions.length,
+        });
+    });
+    server.registerTool('find_module', {
+        title: 'Find Environment Modules',
+        description: 'Search the HPC environment module tree (module avail). Useful before building sbatch scripts.',
+        inputSchema: {
+            pattern: zod_1.z.string().optional().default('').describe('Module search pattern (e.g. python, openmpi/4).'),
+            limit: zod_1.z.number().int().min(1).max(200).optional().default(40).describe('Max module names to return.'),
+        },
+    }, async ({ pattern, limit }) => {
+        const cleanedPattern = sanitizeModulePattern(String(pattern || '').trim());
+        if (cleanedPattern === null) {
+            return asError('Invalid module pattern. Use letters, digits, ., _, +, -, /, :, and * only.');
+        }
+        const safeLimit = Math.min(200, Math.max(1, Math.floor(limit || 40)));
+        const cmd = cleanedPattern ? `module -t avail ${cleanedPattern} 2>&1` : 'module -t avail 2>&1';
+        const result = await runCommand('bash', ['-lc', cmd], 15_000);
+        if (!result.ok)
+            return asError(result.error || result.stderr || 'module lookup failed');
+        const modules = parseModuleAvailOutput(`${result.stdout}\n${result.stderr}`, safeLimit);
+        return asJson({
+            pattern: cleanedPattern,
+            modules,
+            count: modules.length,
+        });
+    });
+    const transport = new stdio_js_1.StdioServerTransport();
+    await server.connect(transport);
+    process.on('SIGINT', () => process.exit(0));
+    process.on('SIGTERM', () => process.exit(0));
+}
+function isDirectRun() {
+    const argv1 = process.argv[1] || '';
+    return /(?:^|\/|\\)cluster-mcp(?:\.bundle)?(?:\.(?:js|mjs))?$/.test(argv1);
+}
+if (isDirectRun()) {
+    main().catch((err) => {
+        console.error('Cluster MCP server error:', err);
+        process.exit(1);
+    });
+}
+//# sourceMappingURL=cluster-mcp.js.map

package/dist/lib/cluster-mcp.js.map

@@ -0,0 +1 @@
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package/dist/lib/config.d.ts

@@ -70,6 +70,7 @@ export declare function getEmptyDir(): string;
 export declare function getSessionsDir(): string;
 export declare function getLogDir(config: LabgateConfig): string;
 export declare function getSlurmDbPath(): string;
+export declare function getResultsDbPath(): string;
 export declare function validateConfig(config: LabgateConfig): string[];
 export declare function loadConfig(): LabgateConfig;
 export interface EffectiveConfig {

package/dist/lib/config.js

@@ -11,6 +11,7 @@ exports.getEmptyDir = getEmptyDir;
 exports.getSessionsDir = getSessionsDir;
 exports.getLogDir = getLogDir;
 exports.getSlurmDbPath = getSlurmDbPath;
+exports.getResultsDbPath = getResultsDbPath;
 exports.validateConfig = validateConfig;
 exports.loadConfig = loadConfig;
 exports.findLockedFieldConflicts = findLockedFieldConflicts;
@@ -54,7 +55,7 @@ exports.DEFAULT_CONFIG = {
         ],
     },
     network: {
-        mode: 'none',
+        mode: 'host',
         allowed_domains: [
             'api.anthropic.com',
             'api.openai.com',
@@ -77,7 +78,7 @@ exports.DEFAULT_CONFIG = {
     },
 };
 // ── Paths ─────────────────────────────────────────────────
-exports.LABGATE_DIR = (0, path_1.join)((0, os_1.homedir)(), '.labgate');
+exports.LABGATE_DIR = process.env.LABGATE_DIR ?? (0, path_1.join)((0, os_1.homedir)(), '.labgate');
 exports.CONFIG_FILE = 'config.json';
 exports.PRIVATE_DIR_MODE = 0o700;
 exports.PRIVATE_FILE_MODE = 0o600;
@@ -99,7 +100,7 @@ function ensurePrivateFile(path) {
     }
 }
 function getConfigPath() {
-    return (0, path_1.join)(exports.LABGATE_DIR, exports.CONFIG_FILE);
+    return process.env.LABGATE_CONFIG_PATH ?? (0, path_1.join)(exports.LABGATE_DIR, exports.CONFIG_FILE);
 }
 function getUiSocketPath() {
     return (0, path_1.join)(exports.LABGATE_DIR, 'ui.sock');
@@ -122,6 +123,9 @@ function getLogDir(config) {
 function getSlurmDbPath() {
     return (0, path_1.join)(exports.LABGATE_DIR, 'slurm.db');
 }
+function getResultsDbPath() {
+    return (0, path_1.join)(exports.LABGATE_DIR, 'results.json');
+}
 // ── Deep clone helper ──────────────────────────────────────
 function cloneConfig(config) {
     return JSON.parse(JSON.stringify(config));

package/dist/lib/config.js.map

@@ -1 +1 @@
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package/dist/lib/container.d.ts

@@ -34,6 +34,15 @@ export interface SessionFileData {
  * and cannot be hot-reloaded (--bind, --volume, --network, image, runtime).
  */
 export declare function computeMountFingerprint(config: LabgateConfig, imageOverride?: string): string;
+/**
+ * Bundle MCP servers into the sandbox home and write mcp.json
+ * with container-relative paths and environment overrides so that
+ * Claude Code inside the container can discover and spawn them.
+ */
+interface PrepareMcpServerOptions {
+    stageSlurmDeps?: () => boolean;
+}
+export declare function prepareMcpServers(session: SessionOpts, options?: PrepareMcpServerOptions): void;
 /**
  * Convert a container image URI to a local SIF filename.
  * e.g. "docker.io/library/ubuntu:22.04" → "docker.io_library_ubuntu_22.04.sif"
@@ -71,3 +80,4 @@ export declare function stopSession(id: string): Promise<void>;
 export declare function restartSession(id: string, opts: {
     dryRun: boolean;
 }): Promise<void>;
+export {};