labgate 0.5.45 → 0.5.47

package/dist/mcp-bundles/results-mcp.bundle.mjs

@@ -3943,7 +3943,7 @@ var require_core = __commonJS({
       constructor(opts = {}) {
         this.schemas = {};
         this.refs = {};
-        this.formats = {};
+        this.formats = /* @__PURE__ */ Object.create(null);
         this._compilations = /* @__PURE__ */ new Set();
         this._loading = {};
         this._cache = /* @__PURE__ */ new Map();
@@ -4724,6 +4724,7 @@ var require_pattern = __commonJS({
     "use strict";
     Object.defineProperty(exports, "__esModule", { value: true });
     var code_1 = require_code2();
+    var util_1 = require_util();
     var codegen_1 = require_codegen();
     var error48 = {
       message: ({ schemaCode }) => (0, codegen_1.str)`must match pattern "${schemaCode}"`,
@@ -4736,10 +4737,18 @@ var require_pattern = __commonJS({
       $data: true,
       error: error48,
       code(cxt) {
-        const { data, $data, schema, schemaCode, it } = cxt;
+        const { gen, data, $data, schema, schemaCode, it } = cxt;
         const u = it.opts.unicodeRegExp ? "u" : "";
-        const regExp = $data ? (0, codegen_1._)`(new RegExp(${schemaCode}, ${u}))` : (0, code_1.usePattern)(cxt, schema);
-        cxt.fail$data((0, codegen_1._)`!${regExp}.test(${data})`);
+        if ($data) {
+          const { regExp } = it.opts.code;
+          const regExpCode = regExp.code === "new RegExp" ? (0, codegen_1._)`new RegExp` : (0, util_1.useFunc)(gen, regExp);
+          const valid = gen.let("valid");
+          gen.try(() => gen.assign(valid, (0, codegen_1._)`${regExpCode}(${schemaCode}, ${u}).test(${data})`), () => gen.assign(valid, false));
+          cxt.fail$data((0, codegen_1._)`!${valid}`);
+        } else {
+          const regExp = (0, code_1.usePattern)(cxt, schema);
+          cxt.fail$data((0, codegen_1._)`!${regExp}.test(${data})`);
+        }
       }
     };
     exports.default = def;
@@ -24631,10 +24640,9 @@ var ProgressTokenSchema = union([string2(), number2().int()]);
 var CursorSchema = string2();
 var TaskCreationParamsSchema = looseObject({
   /**
-   * Time in milliseconds to keep task results available after completion.
-   * If null, the task has unlimited lifetime until manually cleaned up.
+   * Requested duration in milliseconds to retain task from creation.
    */
-  ttl: union([number2(), _null3()]).optional(),
+  ttl: number2().optional(),
   /**
    * Time in milliseconds to wait between task status requests.
    */
@@ -24934,7 +24942,11 @@ var ClientCapabilitiesSchema = object2({
   /**
    * Present if the client supports task creation.
    */
-  tasks: ClientTasksCapabilitySchema.optional()
+  tasks: ClientTasksCapabilitySchema.optional(),
+  /**
+   * Extensions that the client supports. Keys are extension identifiers (vendor-prefix/extension-name).
+   */
+  extensions: record(string2(), AssertObjectSchema).optional()
 });
 var InitializeRequestParamsSchema = BaseRequestParamsSchema.extend({
   /**
@@ -24995,7 +25007,11 @@ var ServerCapabilitiesSchema = object2({
   /**
    * Present if the server supports task creation.
    */
-  tasks: ServerTasksCapabilitySchema.optional()
+  tasks: ServerTasksCapabilitySchema.optional(),
+  /**
+   * Extensions that the server supports. Keys are extension identifiers (vendor-prefix/extension-name).
+   */
+  extensions: record(string2(), AssertObjectSchema).optional()
 });
 var InitializeResultSchema = ResultSchema.extend({
   /**
@@ -25187,6 +25203,12 @@ var ResourceSchema = object2({
    * The MIME type of this resource, if known.
    */
   mimeType: optional(string2()),
+  /**
+   * The size of the raw resource content, in bytes (i.e., before base64 encoding or any tokenization), if known.
+   *
+   * This can be used by Hosts to display file sizes and estimate context window usage.
+   */
+  size: optional(number2()),
   /**
    * Optional annotations for the client.
    */
@@ -27682,6 +27704,10 @@ var Protocol = class {
     this._progressHandlers.clear();
     this._taskProgressTokens.clear();
     this._pendingDebouncedNotifications.clear();
+    for (const info of this._timeoutInfo.values()) {
+      clearTimeout(info.timeoutId);
+    }
+    this._timeoutInfo.clear();
     for (const controller of this._requestHandlerAbortControllers.values()) {
       controller.abort();
     }
@@ -27812,7 +27838,9 @@ var Protocol = class {
         await capturedTransport?.send(errorResponse);
       }
     }).catch((error48) => this._onerror(new Error(`Failed to send response: ${error48}`))).finally(() => {
-      this._requestHandlerAbortControllers.delete(request.id);
+      if (this._requestHandlerAbortControllers.get(request.id) === abortController) {
+        this._requestHandlerAbortControllers.delete(request.id);
+      }
     });
   }
   _onprogress(notification) {
@@ -28508,6 +28536,147 @@ var ExperimentalServerTasks = class {
   requestStream(request, resultSchema, options) {
     return this._server.requestStream(request, resultSchema, options);
   }
+  /**
+   * Sends a sampling request and returns an AsyncGenerator that yields response messages.
+   * The generator is guaranteed to end with either a 'result' or 'error' message.
+   *
+   * For task-augmented requests, yields 'taskCreated' and 'taskStatus' messages
+   * before the final result.
+   *
+   * @example
+   * ```typescript
+   * const stream = server.experimental.tasks.createMessageStream({
+   *     messages: [{ role: 'user', content: { type: 'text', text: 'Hello' } }],
+   *     maxTokens: 100
+   * }, {
+   *     onprogress: (progress) => {
+   *         // Handle streaming tokens via progress notifications
+   *         console.log('Progress:', progress.message);
+   *     }
+   * });
+   *
+   * for await (const message of stream) {
+   *     switch (message.type) {
+   *         case 'taskCreated':
+   *             console.log('Task created:', message.task.taskId);
+   *             break;
+   *         case 'taskStatus':
+   *             console.log('Task status:', message.task.status);
+   *             break;
+   *         case 'result':
+   *             console.log('Final result:', message.result);
+   *             break;
+   *         case 'error':
+   *             console.error('Error:', message.error);
+   *             break;
+   *     }
+   * }
+   * ```
+   *
+   * @param params - The sampling request parameters
+   * @param options - Optional request options (timeout, signal, task creation params, onprogress, etc.)
+   * @returns AsyncGenerator that yields ResponseMessage objects
+   *
+   * @experimental
+   */
+  createMessageStream(params, options) {
+    const clientCapabilities = this._server.getClientCapabilities();
+    if ((params.tools || params.toolChoice) && !clientCapabilities?.sampling?.tools) {
+      throw new Error("Client does not support sampling tools capability.");
+    }
+    if (params.messages.length > 0) {
+      const lastMessage = params.messages[params.messages.length - 1];
+      const lastContent = Array.isArray(lastMessage.content) ? lastMessage.content : [lastMessage.content];
+      const hasToolResults = lastContent.some((c) => c.type === "tool_result");
+      const previousMessage = params.messages.length > 1 ? params.messages[params.messages.length - 2] : void 0;
+      const previousContent = previousMessage ? Array.isArray(previousMessage.content) ? previousMessage.content : [previousMessage.content] : [];
+      const hasPreviousToolUse = previousContent.some((c) => c.type === "tool_use");
+      if (hasToolResults) {
+        if (lastContent.some((c) => c.type !== "tool_result")) {
+          throw new Error("The last message must contain only tool_result content if any is present");
+        }
+        if (!hasPreviousToolUse) {
+          throw new Error("tool_result blocks are not matching any tool_use from the previous message");
+        }
+      }
+      if (hasPreviousToolUse) {
+        const toolUseIds = new Set(previousContent.filter((c) => c.type === "tool_use").map((c) => c.id));
+        const toolResultIds = new Set(lastContent.filter((c) => c.type === "tool_result").map((c) => c.toolUseId));
+        if (toolUseIds.size !== toolResultIds.size || ![...toolUseIds].every((id) => toolResultIds.has(id))) {
+          throw new Error("ids of tool_result blocks and tool_use blocks from previous message do not match");
+        }
+      }
+    }
+    return this.requestStream({
+      method: "sampling/createMessage",
+      params
+    }, CreateMessageResultSchema, options);
+  }
+  /**
+   * Sends an elicitation request and returns an AsyncGenerator that yields response messages.
+   * The generator is guaranteed to end with either a 'result' or 'error' message.
+   *
+   * For task-augmented requests (especially URL-based elicitation), yields 'taskCreated'
+   * and 'taskStatus' messages before the final result.
+   *
+   * @example
+   * ```typescript
+   * const stream = server.experimental.tasks.elicitInputStream({
+   *     mode: 'url',
+   *     message: 'Please authenticate',
+   *     elicitationId: 'auth-123',
+   *     url: 'https://example.com/auth'
+   * }, {
+   *     task: { ttl: 300000 } // Task-augmented for long-running auth flow
+   * });
+   *
+   * for await (const message of stream) {
+   *     switch (message.type) {
+   *         case 'taskCreated':
+   *             console.log('Task created:', message.task.taskId);
+   *             break;
+   *         case 'taskStatus':
+   *             console.log('Task status:', message.task.status);
+   *             break;
+   *         case 'result':
+   *             console.log('User action:', message.result.action);
+   *             break;
+   *         case 'error':
+   *             console.error('Error:', message.error);
+   *             break;
+   *     }
+   * }
+   * ```
+   *
+   * @param params - The elicitation request parameters
+   * @param options - Optional request options (timeout, signal, task creation params, etc.)
+   * @returns AsyncGenerator that yields ResponseMessage objects
+   *
+   * @experimental
+   */
+  elicitInputStream(params, options) {
+    const clientCapabilities = this._server.getClientCapabilities();
+    const mode = params.mode ?? "form";
+    switch (mode) {
+      case "url": {
+        if (!clientCapabilities?.elicitation?.url) {
+          throw new Error("Client does not support url elicitation.");
+        }
+        break;
+      }
+      case "form": {
+        if (!clientCapabilities?.elicitation?.form) {
+          throw new Error("Client does not support form elicitation.");
+        }
+        break;
+      }
+    }
+    const normalizedParams = mode === "form" && params.mode === void 0 ? { ...params, mode: "form" } : params;
+    return this.requestStream({
+      method: "elicitation/create",
+      params: normalizedParams
+    }, ElicitResultSchema, options);
+  }
   /**
    * Gets the current status of a task.
    *
@@ -29684,6 +29853,9 @@ var McpServer = class {
           annotations = rest.shift();
         }
       } else if (typeof firstArg === "object" && firstArg !== null) {
+        if (Object.values(firstArg).some((v) => typeof v === "object" && v !== null)) {
+          throw new Error(`Tool ${name} expected a Zod schema or ToolAnnotations, but received an unrecognized object`);
+        }
         annotations = rest.shift();
       }
     }
@@ -29802,6 +29974,9 @@ function getZodSchemaObject(schema) {
   if (isZodRawShapeCompat(schema)) {
     return objectFromShape(schema);
   }
+  if (!isZodSchemaInstance(schema)) {
+    throw new Error("inputSchema must be a Zod schema or raw shape, received an unrecognized object");
+  }
   return schema;
 }
 function promptArgumentsFromSchema(schema) {
@@ -29957,7 +30132,7 @@ import { homedir } from "os";
 var DEFAULT_CONFIG = {
   runtime: "auto",
   images_dir: "",
-  // Default sandbox image: includes python3 + basic build tools (git/make/g++).
+  // Default sandbox image is expected to include python3 + basic build tools (git/make/g++).
   // Note: pip/venv are not included by default in Debian; users may still need a
   // custom image for richer Python workflows.
   image: "docker.io/library/node:20-bookworm",

package/dist/mcp-bundles/slurm-mcp.bundle.mjs

@@ -3949,7 +3949,7 @@ var require_core = __commonJS({
       constructor(opts = {}) {
         this.schemas = {};
         this.refs = {};
-        this.formats = {};
+        this.formats = /* @__PURE__ */ Object.create(null);
         this._compilations = /* @__PURE__ */ new Set();
         this._loading = {};
         this._cache = /* @__PURE__ */ new Map();
@@ -4730,6 +4730,7 @@ var require_pattern = __commonJS({
     "use strict";
     Object.defineProperty(exports, "__esModule", { value: true });
     var code_1 = require_code2();
+    var util_1 = require_util();
     var codegen_1 = require_codegen();
     var error48 = {
       message: ({ schemaCode }) => (0, codegen_1.str)`must match pattern "${schemaCode}"`,
@@ -4742,10 +4743,18 @@ var require_pattern = __commonJS({
       $data: true,
       error: error48,
       code(cxt) {
-        const { data, $data, schema, schemaCode, it } = cxt;
+        const { gen, data, $data, schema, schemaCode, it } = cxt;
         const u = it.opts.unicodeRegExp ? "u" : "";
-        const regExp = $data ? (0, codegen_1._)`(new RegExp(${schemaCode}, ${u}))` : (0, code_1.usePattern)(cxt, schema);
-        cxt.fail$data((0, codegen_1._)`!${regExp}.test(${data})`);
+        if ($data) {
+          const { regExp } = it.opts.code;
+          const regExpCode = regExp.code === "new RegExp" ? (0, codegen_1._)`new RegExp` : (0, util_1.useFunc)(gen, regExp);
+          const valid = gen.let("valid");
+          gen.try(() => gen.assign(valid, (0, codegen_1._)`${regExpCode}(${schemaCode}, ${u}).test(${data})`), () => gen.assign(valid, false));
+          cxt.fail$data((0, codegen_1._)`!${valid}`);
+        } else {
+          const regExp = (0, code_1.usePattern)(cxt, schema);
+          cxt.fail$data((0, codegen_1._)`!${regExp}.test(${data})`);
+        }
       }
     };
     exports.default = def;
@@ -24637,10 +24646,9 @@ var ProgressTokenSchema = union([string2(), number2().int()]);
 var CursorSchema = string2();
 var TaskCreationParamsSchema = looseObject({
   /**
-   * Time in milliseconds to keep task results available after completion.
-   * If null, the task has unlimited lifetime until manually cleaned up.
+   * Requested duration in milliseconds to retain task from creation.
    */
-  ttl: union([number2(), _null3()]).optional(),
+  ttl: number2().optional(),
   /**
    * Time in milliseconds to wait between task status requests.
    */
@@ -24940,7 +24948,11 @@ var ClientCapabilitiesSchema = object2({
   /**
    * Present if the client supports task creation.
    */
-  tasks: ClientTasksCapabilitySchema.optional()
+  tasks: ClientTasksCapabilitySchema.optional(),
+  /**
+   * Extensions that the client supports. Keys are extension identifiers (vendor-prefix/extension-name).
+   */
+  extensions: record(string2(), AssertObjectSchema).optional()
 });
 var InitializeRequestParamsSchema = BaseRequestParamsSchema.extend({
   /**
@@ -25001,7 +25013,11 @@ var ServerCapabilitiesSchema = object2({
   /**
    * Present if the server supports task creation.
    */
-  tasks: ServerTasksCapabilitySchema.optional()
+  tasks: ServerTasksCapabilitySchema.optional(),
+  /**
+   * Extensions that the server supports. Keys are extension identifiers (vendor-prefix/extension-name).
+   */
+  extensions: record(string2(), AssertObjectSchema).optional()
 });
 var InitializeResultSchema = ResultSchema.extend({
   /**
@@ -25193,6 +25209,12 @@ var ResourceSchema = object2({
    * The MIME type of this resource, if known.
    */
   mimeType: optional(string2()),
+  /**
+   * The size of the raw resource content, in bytes (i.e., before base64 encoding or any tokenization), if known.
+   *
+   * This can be used by Hosts to display file sizes and estimate context window usage.
+   */
+  size: optional(number2()),
   /**
    * Optional annotations for the client.
    */
@@ -27688,6 +27710,10 @@ var Protocol = class {
     this._progressHandlers.clear();
     this._taskProgressTokens.clear();
     this._pendingDebouncedNotifications.clear();
+    for (const info of this._timeoutInfo.values()) {
+      clearTimeout(info.timeoutId);
+    }
+    this._timeoutInfo.clear();
     for (const controller of this._requestHandlerAbortControllers.values()) {
       controller.abort();
     }
@@ -27818,7 +27844,9 @@ var Protocol = class {
         await capturedTransport?.send(errorResponse);
       }
     }).catch((error48) => this._onerror(new Error(`Failed to send response: ${error48}`))).finally(() => {
-      this._requestHandlerAbortControllers.delete(request.id);
+      if (this._requestHandlerAbortControllers.get(request.id) === abortController) {
+        this._requestHandlerAbortControllers.delete(request.id);
+      }
     });
   }
   _onprogress(notification) {
@@ -28514,6 +28542,147 @@ var ExperimentalServerTasks = class {
   requestStream(request, resultSchema, options) {
     return this._server.requestStream(request, resultSchema, options);
   }
+  /**
+   * Sends a sampling request and returns an AsyncGenerator that yields response messages.
+   * The generator is guaranteed to end with either a 'result' or 'error' message.
+   *
+   * For task-augmented requests, yields 'taskCreated' and 'taskStatus' messages
+   * before the final result.
+   *
+   * @example
+   * ```typescript
+   * const stream = server.experimental.tasks.createMessageStream({
+   *     messages: [{ role: 'user', content: { type: 'text', text: 'Hello' } }],
+   *     maxTokens: 100
+   * }, {
+   *     onprogress: (progress) => {
+   *         // Handle streaming tokens via progress notifications
+   *         console.log('Progress:', progress.message);
+   *     }
+   * });
+   *
+   * for await (const message of stream) {
+   *     switch (message.type) {
+   *         case 'taskCreated':
+   *             console.log('Task created:', message.task.taskId);
+   *             break;
+   *         case 'taskStatus':
+   *             console.log('Task status:', message.task.status);
+   *             break;
+   *         case 'result':
+   *             console.log('Final result:', message.result);
+   *             break;
+   *         case 'error':
+   *             console.error('Error:', message.error);
+   *             break;
+   *     }
+   * }
+   * ```
+   *
+   * @param params - The sampling request parameters
+   * @param options - Optional request options (timeout, signal, task creation params, onprogress, etc.)
+   * @returns AsyncGenerator that yields ResponseMessage objects
+   *
+   * @experimental
+   */
+  createMessageStream(params, options) {
+    const clientCapabilities = this._server.getClientCapabilities();
+    if ((params.tools || params.toolChoice) && !clientCapabilities?.sampling?.tools) {
+      throw new Error("Client does not support sampling tools capability.");
+    }
+    if (params.messages.length > 0) {
+      const lastMessage = params.messages[params.messages.length - 1];
+      const lastContent = Array.isArray(lastMessage.content) ? lastMessage.content : [lastMessage.content];
+      const hasToolResults = lastContent.some((c) => c.type === "tool_result");
+      const previousMessage = params.messages.length > 1 ? params.messages[params.messages.length - 2] : void 0;
+      const previousContent = previousMessage ? Array.isArray(previousMessage.content) ? previousMessage.content : [previousMessage.content] : [];
+      const hasPreviousToolUse = previousContent.some((c) => c.type === "tool_use");
+      if (hasToolResults) {
+        if (lastContent.some((c) => c.type !== "tool_result")) {
+          throw new Error("The last message must contain only tool_result content if any is present");
+        }
+        if (!hasPreviousToolUse) {
+          throw new Error("tool_result blocks are not matching any tool_use from the previous message");
+        }
+      }
+      if (hasPreviousToolUse) {
+        const toolUseIds = new Set(previousContent.filter((c) => c.type === "tool_use").map((c) => c.id));
+        const toolResultIds = new Set(lastContent.filter((c) => c.type === "tool_result").map((c) => c.toolUseId));
+        if (toolUseIds.size !== toolResultIds.size || ![...toolUseIds].every((id) => toolResultIds.has(id))) {
+          throw new Error("ids of tool_result blocks and tool_use blocks from previous message do not match");
+        }
+      }
+    }
+    return this.requestStream({
+      method: "sampling/createMessage",
+      params
+    }, CreateMessageResultSchema, options);
+  }
+  /**
+   * Sends an elicitation request and returns an AsyncGenerator that yields response messages.
+   * The generator is guaranteed to end with either a 'result' or 'error' message.
+   *
+   * For task-augmented requests (especially URL-based elicitation), yields 'taskCreated'
+   * and 'taskStatus' messages before the final result.
+   *
+   * @example
+   * ```typescript
+   * const stream = server.experimental.tasks.elicitInputStream({
+   *     mode: 'url',
+   *     message: 'Please authenticate',
+   *     elicitationId: 'auth-123',
+   *     url: 'https://example.com/auth'
+   * }, {
+   *     task: { ttl: 300000 } // Task-augmented for long-running auth flow
+   * });
+   *
+   * for await (const message of stream) {
+   *     switch (message.type) {
+   *         case 'taskCreated':
+   *             console.log('Task created:', message.task.taskId);
+   *             break;
+   *         case 'taskStatus':
+   *             console.log('Task status:', message.task.status);
+   *             break;
+   *         case 'result':
+   *             console.log('User action:', message.result.action);
+   *             break;
+   *         case 'error':
+   *             console.error('Error:', message.error);
+   *             break;
+   *     }
+   * }
+   * ```
+   *
+   * @param params - The elicitation request parameters
+   * @param options - Optional request options (timeout, signal, task creation params, etc.)
+   * @returns AsyncGenerator that yields ResponseMessage objects
+   *
+   * @experimental
+   */
+  elicitInputStream(params, options) {
+    const clientCapabilities = this._server.getClientCapabilities();
+    const mode = params.mode ?? "form";
+    switch (mode) {
+      case "url": {
+        if (!clientCapabilities?.elicitation?.url) {
+          throw new Error("Client does not support url elicitation.");
+        }
+        break;
+      }
+      case "form": {
+        if (!clientCapabilities?.elicitation?.form) {
+          throw new Error("Client does not support form elicitation.");
+        }
+        break;
+      }
+    }
+    const normalizedParams = mode === "form" && params.mode === void 0 ? { ...params, mode: "form" } : params;
+    return this.requestStream({
+      method: "elicitation/create",
+      params: normalizedParams
+    }, ElicitResultSchema, options);
+  }
   /**
    * Gets the current status of a task.
    *
@@ -29690,6 +29859,9 @@ var McpServer = class {
           annotations = rest.shift();
         }
       } else if (typeof firstArg === "object" && firstArg !== null) {
+        if (Object.values(firstArg).some((v) => typeof v === "object" && v !== null)) {
+          throw new Error(`Tool ${name} expected a Zod schema or ToolAnnotations, but received an unrecognized object`);
+        }
         annotations = rest.shift();
       }
     }
@@ -29808,6 +29980,9 @@ function getZodSchemaObject(schema) {
   if (isZodRawShapeCompat(schema)) {
     return objectFromShape(schema);
   }
+  if (!isZodSchemaInstance(schema)) {
+    throw new Error("inputSchema must be a Zod schema or raw shape, received an unrecognized object");
+  }
   return schema;
 }
 function promptArgumentsFromSchema(schema) {
@@ -30317,7 +30492,7 @@ import { homedir } from "os";
 var DEFAULT_CONFIG = {
   runtime: "auto",
   images_dir: "",
-  // Default sandbox image: includes python3 + basic build tools (git/make/g++).
+  // Default sandbox image is expected to include python3 + basic build tools (git/make/g++).
   // Note: pip/venv are not included by default in Debian; users may still need a
   // custom image for richer Python workflows.
   image: "docker.io/library/node:20-bookworm",

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "labgate",
-  "version": "0.5.45",
+  "version": "0.5.47",
   "description": "Policy-controlled sandboxes for AI coding agents on HPC (Claude-first, Apptainer, SLURM).",
   "homepage": "https://labgate.dev",
   "keywords": [
@@ -56,6 +56,17 @@
     "better-sqlite3": "^12.6.2",
     "node-pty": "^1.1.0"
   },
+  "overrides": {
+    "@hono/node-server": "^1.19.14",
+    "ajv": "^8.20.0",
+    "express-rate-limit": "^8.4.1",
+    "hono": "^4.12.16",
+    "micromatch": {
+      "picomatch": "^2.3.2"
+    },
+    "path-to-regexp": "^8.4.2",
+    "qs": "^6.15.1"
+  },
   "devDependencies": {
     "@types/better-sqlite3": "^7.6.13",
     "@types/node": "^22.0.0",