labgate 0.5.11 → 0.5.13

package/dist/lib/slurm-cli-passthrough.js

@@ -0,0 +1,330 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.stageSlurmCliPassthrough = stageSlurmCliPassthrough;
+const child_process_1 = require("child_process");
+const fs_1 = require("fs");
+const path_1 = require("path");
+const config_js_1 = require("./config.js");
+const DEFAULT_SLURM_COMMANDS = [
+    'srun',
+    'sbatch',
+    'squeue',
+    'sacct',
+    'scancel',
+    'sinfo',
+    'scontrol',
+];
+const SKIP_LIB_BASENAMES = new Set([
+    'linux-vdso.so.1',
+    'libc.so.6',
+    'libpthread.so.0',
+    'libdl.so.2',
+    'librt.so.1',
+    'libm.so.6',
+    'libresolv.so.2',
+    'libutil.so.1',
+    'libgcc_s.so.1',
+    'libstdc++.so.6',
+]);
+function isExecutableFile(path) {
+    try {
+        const st = (0, fs_1.statSync)(path);
+        if (!st.isFile())
+            return false;
+        (0, fs_1.accessSync)(path, fs_1.constants.X_OK);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+function which(command, env) {
+    const pathValue = env.PATH ?? process.env.PATH ?? '';
+    if (!pathValue)
+        return null;
+    const parts = pathValue.split(path_1.delimiter).filter(Boolean);
+    for (const dir of parts) {
+        const candidate = (0, path_1.join)(dir, command);
+        if (isExecutableFile(candidate))
+            return candidate;
+    }
+    return null;
+}
+function parseLddPaths(output) {
+    const paths = [];
+    for (const raw of output.split('\n')) {
+        const line = raw.trim();
+        if (!line)
+            continue;
+        if (line.includes('=>')) {
+            const [, rhs] = line.split('=>', 2);
+            const rest = (rhs || '').trim();
+            if (!rest || rest.startsWith('not found'))
+                continue;
+            const p = rest.split(/\s+/)[0] || '';
+            if (p.startsWith('/'))
+                paths.push(p);
+            continue;
+        }
+        if (line.startsWith('/')) {
+            const p = line.split(/\s+/)[0] || '';
+            if (p.startsWith('/'))
+                paths.push(p);
+        }
+    }
+    return Array.from(new Set(paths));
+}
+function shouldCopyLib(libPath) {
+    const base = (0, path_1.basename)(libPath);
+    if (SKIP_LIB_BASENAMES.has(base))
+        return false;
+    if (base.startsWith('ld-linux'))
+        return false;
+    return true;
+}
+function copyFileBestEffort(src, dst) {
+    try {
+        (0, fs_1.copyFileSync)(src, dst);
+        try {
+            (0, fs_1.chmodSync)(dst, 0o644);
+        }
+        catch { /* ignore */ }
+    }
+    catch {
+        // Best effort
+    }
+}
+function resolveSlurmConf(commandPath, env) {
+    const candidates = [];
+    const envConf = String(env.SLURM_CONF || '').trim();
+    if (envConf)
+        candidates.push(envConf);
+    // Common distro paths
+    candidates.push('/etc/slurm/slurm.conf', '/etc/slurm-llnl/slurm.conf', '/etc/slurm.conf', '/usr/local/etc/slurm.conf');
+    // Heuristic: infer install prefix from command path (e.g. /opt/slurm/bin/squeue -> /opt/slurm/etc/slurm.conf)
+    if (commandPath) {
+        const prefix = (0, path_1.dirname)((0, path_1.dirname)(commandPath));
+        candidates.push((0, path_1.join)(prefix, 'etc', 'slurm.conf'), (0, path_1.join)(prefix, 'etc', 'slurm', 'slurm.conf'), (0, path_1.join)(prefix, 'etc', 'slurm-llnl', 'slurm.conf'));
+    }
+    for (const p of candidates) {
+        try {
+            if (p && (0, fs_1.existsSync)(p) && (0, fs_1.statSync)(p).isFile())
+                return p;
+        }
+        catch {
+            // ignore
+        }
+    }
+    return null;
+}
+function buildSlurmWrapperScript(cmd, stageRootInContainer) {
+    const real = `${stageRootInContainer}/bin/${cmd}`;
+    const lib = `${stageRootInContainer}/lib`;
+    const conf = `${stageRootInContainer}/etc/slurm.conf`;
+    return [
+        '#!/usr/bin/env bash',
+        'set -euo pipefail',
+        `REAL="${real}"`,
+        `LIBDIR="${lib}"`,
+        `CONF="${conf}"`,
+        'if [ ! -x "$REAL" ]; then',
+        `  echo "[labgate] SLURM CLI '${cmd}' is not staged in this sandbox." >&2`,
+        '  echo "[labgate] Fix: ensure SLURM is available on the host (e.g. login node), then restart the LabGate session." >&2',
+        '  exit 127',
+        'fi',
+        'if [ -d "$LIBDIR" ]; then',
+        '  export LD_LIBRARY_PATH="$LIBDIR${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}"',
+        'fi',
+        'if [ -z "${SLURM_CONF:-}" ] && [ -f "$CONF" ]; then',
+        '  export SLURM_CONF="$CONF"',
+        'fi',
+        'exec "$REAL" "$@"',
+        '',
+    ].join('\n');
+}
+function tryExtractPluginDir(slurmConfText) {
+    for (const raw of slurmConfText.split('\n')) {
+        const line = raw.replace(/#.*$/, '').trim();
+        if (!line)
+            continue;
+        const m = line.match(/^PluginDir\s*=\s*(.+)\s*$/);
+        if (!m)
+            continue;
+        const value = (m[1] || '').trim();
+        if (!value)
+            return null;
+        // Slurm allows multiple dirs separated by ":"; prefer the first.
+        return value.split(':')[0].trim() || null;
+    }
+    return null;
+}
+function rewritePluginDir(slurmConfText, pluginDirInContainer) {
+    const out = [];
+    let replaced = false;
+    for (const raw of slurmConfText.split('\n')) {
+        if (!replaced) {
+            const stripped = raw.replace(/#.*$/, '');
+            if (/^\s*PluginDir\s*=/.test(stripped)) {
+                out.push(`PluginDir=${pluginDirInContainer}`);
+                replaced = true;
+                continue;
+            }
+        }
+        out.push(raw);
+    }
+    if (!replaced) {
+        out.push(`PluginDir=${pluginDirInContainer}`);
+    }
+    return out.join('\n');
+}
+/**
+ * Best-effort: stage host SLURM client commands into the sandbox HOME and install wrappers
+ * in $HOME/.labgate-bin so they are available inside the container even when the image
+ * does not ship with SLURM.
+ *
+ * This is intentionally simple: copy binaries + ldd libraries + slurm.conf (if found).
+ * The host-side session launcher is responsible for bind-mounting /run/munge when present.
+ */
+function stageSlurmCliPassthrough(options) {
+    const env = options.env ?? process.env;
+    const commands = options.commands ?? [...DEFAULT_SLURM_COMMANDS];
+    const stageRoot = (0, path_1.join)(options.sandboxHome, '.labgate', 'slurm');
+    const binDir = (0, path_1.join)(stageRoot, 'bin');
+    const libDir = (0, path_1.join)(stageRoot, 'lib');
+    const etcDir = (0, path_1.join)(stageRoot, 'etc');
+    const wrapperDir = (0, path_1.join)(options.sandboxHome, '.labgate-bin');
+    const errors = [];
+    const staged = [];
+    const skipped = [];
+    try {
+        (0, config_js_1.ensurePrivateDir)((0, path_1.join)(options.sandboxHome, '.labgate'));
+        (0, config_js_1.ensurePrivateDir)(stageRoot);
+        (0, config_js_1.ensurePrivateDir)(binDir);
+        (0, config_js_1.ensurePrivateDir)(libDir);
+        (0, config_js_1.ensurePrivateDir)(etcDir);
+        (0, config_js_1.ensurePrivateDir)(wrapperDir);
+    }
+    catch (err) {
+        return {
+            ok: false,
+            staged: [],
+            skipped: commands,
+            errors: [`Failed to initialize SLURM stage directories: ${err?.message ?? String(err)}`],
+            slurmConfPath: null,
+            stageRoot,
+        };
+    }
+    // 1) Resolve host command paths and copy binaries
+    const hostPaths = new Map();
+    for (const cmd of commands) {
+        const hostPath = which(cmd, env);
+        if (!hostPath) {
+            skipped.push(cmd);
+            continue;
+        }
+        hostPaths.set(cmd, hostPath);
+        const target = (0, path_1.join)(binDir, cmd);
+        try {
+            (0, fs_1.copyFileSync)(hostPath, target);
+            // Strip any unexpected setuid/setgid bits from host binaries.
+            try {
+                (0, fs_1.chmodSync)(target, 0o755);
+            }
+            catch { /* ignore */ }
+            staged.push(cmd);
+        }
+        catch (err) {
+            skipped.push(cmd);
+            errors.push(`Failed to stage ${cmd} from ${hostPath}: ${err?.message ?? String(err)}`);
+        }
+    }
+    // 2) Stage shared libraries for staged commands (best effort)
+    const libsToCopy = new Set();
+    for (const cmd of staged) {
+        const hostPath = hostPaths.get(cmd);
+        if (!hostPath)
+            continue;
+        try {
+            const out = (0, child_process_1.execFileSync)('ldd', [hostPath], { encoding: 'utf-8' });
+            for (const lib of parseLddPaths(String(out || ''))) {
+                if (!shouldCopyLib(lib))
+                    continue;
+                libsToCopy.add(lib);
+            }
+        }
+        catch {
+            // ldd may not be available or may fail; continue.
+        }
+    }
+    for (const lib of libsToCopy) {
+        const target = (0, path_1.join)(libDir, (0, path_1.basename)(lib));
+        if ((0, fs_1.existsSync)(target))
+            continue;
+        copyFileBestEffort(lib, target);
+    }
+    // 3) Stage slurm.conf (best effort)
+    const sampleCmd = hostPaths.get('squeue') ?? hostPaths.get('scontrol') ?? hostPaths.get('sbatch') ?? null;
+    const slurmConfPath = resolveSlurmConf(sampleCmd, env);
+    if (slurmConfPath) {
+        try {
+            const confText = (0, fs_1.readFileSync)(slurmConfPath, 'utf-8');
+            const pluginDir = tryExtractPluginDir(confText);
+            const stageRootInContainer = '/home/sandbox/.labgate/slurm';
+            const pluginDirInContainer = `${stageRootInContainer}/plugins`;
+            let rewritten = confText;
+            if (pluginDir && (0, fs_1.existsSync)(pluginDir)) {
+                try {
+                    // Copy plugin directory tree into the sandbox; many clusters set PluginDir in slurm.conf.
+                    (0, fs_1.cpSync)(pluginDir, (0, path_1.join)(stageRoot, 'plugins'), { recursive: true, force: true });
+                    rewritten = rewritePluginDir(confText, pluginDirInContainer);
+                }
+                catch (err) {
+                    errors.push(`Failed to stage SLURM plugins from ${pluginDir}: ${err?.message ?? String(err)}`);
+                    // Keep the original config if we couldn't stage the plugins.
+                    rewritten = confText;
+                }
+            }
+            (0, fs_1.writeFileSync)((0, path_1.join)(etcDir, 'slurm.conf'), rewritten, { encoding: 'utf-8', mode: 0o644 });
+        }
+        catch (err) {
+            errors.push(`Failed to stage slurm.conf from ${slurmConfPath}: ${err?.message ?? String(err)}`);
+        }
+    }
+    // 4) Install wrappers (for all requested commands).
+    // Even if we fail to stage the real binary, the wrapper provides a useful
+    // error message instead of "command not found" inside the sandbox.
+    const stageRootInContainer = '/home/sandbox/.labgate/slurm';
+    for (const cmd of commands) {
+        const wrapperPath = (0, path_1.join)(wrapperDir, cmd);
+        try {
+            const script = buildSlurmWrapperScript(cmd, stageRootInContainer);
+            (0, fs_1.writeFileSync)(wrapperPath, script, { encoding: 'utf-8', mode: 0o755 });
+        }
+        catch (err) {
+            errors.push(`Failed to write wrapper for ${cmd}: ${err?.message ?? String(err)}`);
+        }
+    }
+    // 5) Write a small manifest for debugging
+    try {
+        const manifest = {
+            staged_at: new Date().toISOString(),
+            commands: staged,
+            slurm_conf: slurmConfPath,
+            lib_count: libsToCopy.size,
+            notes: 'Host SLURM CLI staged by LabGate for in-container use.',
+        };
+        (0, fs_1.writeFileSync)((0, path_1.join)(stageRoot, 'manifest.json'), JSON.stringify(manifest, null, 2) + '\n', 'utf-8');
+    }
+    catch {
+        // ignore
+    }
+    return {
+        ok: staged.length > 0,
+        staged,
+        skipped,
+        errors,
+        slurmConfPath,
+        stageRoot,
+    };
+}
+//# sourceMappingURL=slurm-cli-passthrough.js.map

package/dist/lib/slurm-cli-passthrough.js.map

@@ -0,0 +1 @@
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package/dist/lib/test/integration-harness.js

@@ -112,7 +112,7 @@ class DashboardIntegrationHarness {
         (0, fs_1.mkdirSync)(configDir, { recursive: true });
         (0, fs_1.writeFileSync)((0, path_1.join)(configDir, 'config.json'), JSON.stringify({
             runtime: 'apptainer',
-            image: 'docker.io/library/node:20-slim',
+            image: 'docker.io/library/node:20-bookworm',
             session_timeout_hours: 1,
             filesystem: { extra_paths: [], blocked_patterns: [] },
             commands: { blacklist: [] },

package/dist/lib/test/integration-harness.js.map

@@ -1 +1 @@
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package/dist/lib/ui.html

@@ -2448,7 +2448,7 @@
         </div>
         <div class="field">
           <label for="image">Container Image</label>
-          <input type="text" id="image" placeholder="docker.io/library/node:20-slim">
+          <input type="text" id="image" placeholder="docker.io/library/node:20-bookworm">
         </div>
       </div>
     </div>

package/dist/mcp-bundles/dataset-mcp.bundle.mjs

@@ -29944,7 +29944,10 @@ import { join } from "path";
 import { homedir } from "os";
 var DEFAULT_CONFIG = {
   runtime: "auto",
-  image: "docker.io/library/node:20-slim",
+  // Default sandbox image: includes python3 + basic build tools (git/make/g++).
+  // Note: pip/venv are not included by default in Debian; users may still need a
+  // custom image for richer Python workflows.
+  image: "docker.io/library/node:20-bookworm",
   session_timeout_hours: 8,
   filesystem: {
     extra_paths: [],

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "labgate",
-  "version": "0.5.11",
+  "version": "0.5.13",
   "description": "Policy-controlled sandboxes for AI coding agents — https://labgate.dev",
   "homepage": "https://labgate.dev",
   "keywords": [