kynjal-cli 3.1.3 → 4.0.0

package/.claude/agents/core/coder.md

@@ -9,7 +9,7 @@ capabilities:
   - optimization
   - api_design
   - error_handling
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning         # ReasoningBank pattern storage
   - context_enhancement   # GNN-enhanced search
   - fast_processing       # Flash Attention

package/.claude/agents/core/planner.md

@@ -9,7 +9,7 @@ capabilities:
   - resource_allocation
   - timeline_estimation
   - risk_assessment
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning         # Learn from planning outcomes
   - context_enhancement   # GNN-enhanced dependency mapping
   - fast_processing       # Flash Attention planning
@@ -366,7 +366,7 @@ console.log(`Common planning gaps: ${stats.commonCritiques}`);
    - Efficient resource utilization (MoE expert selection)
    - Continuous progress visibility
 
-4. **New v2.0.0-alpha Practices**:
+4. **New v3.0.0-alpha.1 Practices**:
    - Learn from past plans (ReasoningBank)
    - Use GNN for dependency mapping (+12.4% accuracy)
    - Route tasks with MoE attention (optimal agent selection)

package/.claude/agents/core/researcher.md

@@ -9,7 +9,7 @@ capabilities:
   - documentation_research
   - dependency_tracking
   - knowledge_synthesis
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning         # ReasoningBank pattern storage
   - context_enhancement   # GNN-enhanced search (+12.4% accuracy)
   - fast_processing       # Flash Attention

package/.claude/agents/core/reviewer.md

@@ -9,7 +9,7 @@ capabilities:
   - performance_analysis
   - best_practices
   - documentation_review
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning         # Learn from review patterns
   - context_enhancement   # GNN-enhanced issue detection
   - fast_processing       # Flash Attention review

package/.claude/agents/core/tester.md

@@ -9,7 +9,7 @@ capabilities:
   - e2e_testing
   - performance_testing
   - security_testing
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning         # Learn from test failures
   - context_enhancement   # GNN-enhanced test case discovery
   - fast_processing       # Flash Attention test generation

package/.claude/agents/data/data-ml-model.md

@@ -112,7 +112,7 @@ hooks:
     echo "📦 Checking ML libraries..."
     python -c "import sklearn, pandas, numpy; print('Core ML libraries available')" 2>/dev/null || echo "ML libraries not installed"
 
-    # 🧠 v2.0.0-alpha: Learn from past model training patterns
+    # 🧠 v3.0.0-alpha.1: Learn from past model training patterns
     echo "🧠 Learning from past ML training patterns..."
     SIMILAR_MODELS=$(npx claude-flow@alpha memory search-patterns "ML training: $TASK" --k=5 --min-reward=0.8 2>/dev/null || echo "")
     if [ -n "$SIMILAR_MODELS" ]; then
@@ -133,7 +133,7 @@ hooks:
     find . -name "*.pkl" -o -name "*.h5" -o -name "*.joblib" | grep -v __pycache__ | head -5
     echo "📋 Remember to version and document your model"
 
-    # 🧠 v2.0.0-alpha: Store model training patterns
+    # 🧠 v3.0.0-alpha.1: Store model training patterns
     echo "🧠 Storing ML training pattern for future learning..."
     MODEL_COUNT=$(find . -name "*.pkl" -o -name "*.h5" | grep -v __pycache__ | wc -l)
     REWARD="0.85"
@@ -176,9 +176,9 @@ examples:
     response: "I'll create a neural network architecture for image classification, including data augmentation, model training, and performance evaluation..."
 ---
 
-# Machine Learning Model Developer v2.0.0-alpha
+# Machine Learning Model Developer v3.0.0-alpha.1
 
-You are a Machine Learning Model Developer with **self-learning** hyperparameter optimization and **pattern recognition** powered by Agentic-Flow v2.0.0-alpha.
+You are a Machine Learning Model Developer with **self-learning** hyperparameter optimization and **pattern recognition** powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## 🧠 Self-Learning Protocol
 

package/.claude/agents/development/dev-backend-api.md

@@ -109,7 +109,7 @@ hooks:
     echo "📋 Analyzing existing API structure..."
     find . -name "*.route.js" -o -name "*.controller.js" | head -20
 
-    # 🧠 v2.0.0-alpha: Learn from past API implementations
+    # 🧠 v3.0.0-alpha.1: Learn from past API implementations
     echo "🧠 Learning from past API patterns..."
     SIMILAR_PATTERNS=$(npx claude-flow@alpha memory search-patterns "API implementation: $TASK" --k=5 --min-reward=0.85 2>/dev/null || echo "")
     if [ -n "$SIMILAR_PATTERNS" ]; then
@@ -129,7 +129,7 @@ hooks:
     echo "📊 Running API tests..."
     npm run test:api 2>/dev/null || echo "No API tests configured"
 
-    # 🧠 v2.0.0-alpha: Store learning patterns
+    # 🧠 v3.0.0-alpha.1: Store learning patterns
     echo "🧠 Storing API pattern for future learning..."
     REWARD=$(if npm run test:api 2>/dev/null; then echo "0.95"; else echo "0.7"; fi)
     SUCCESS=$(if npm run test:api 2>/dev/null; then echo "true"; else echo "false"; fi)
@@ -170,9 +170,9 @@ examples:
     response: "I'll implement a complete CRUD API for products with proper validation, error handling, and documentation..."
 ---
 
-# Backend API Developer v2.0.0-alpha
+# Backend API Developer v3.0.0-alpha.1
 
-You are a specialized Backend API Developer agent with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+You are a specialized Backend API Developer agent with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## 🧠 Self-Learning Protocol
 

package/.claude/agents/documentation/docs-api-openapi.md

@@ -104,7 +104,7 @@ hooks:
     # Check for existing OpenAPI docs
     find . -name "openapi.yaml" -o -name "swagger.yaml" -o -name "api.yaml" | grep -v node_modules
 
-    # 🧠 v2.0.0-alpha: Learn from past documentation patterns
+    # 🧠 v3.0.0-alpha.1: Learn from past documentation patterns
     echo "🧠 Learning from past API documentation patterns..."
     SIMILAR_DOCS=$(npx claude-flow@alpha memory search-patterns "API documentation: $TASK" --k=5 --min-reward=0.85 2>/dev/null || echo "")
     if [ -n "$SIMILAR_DOCS" ]; then
@@ -128,7 +128,7 @@ hooks:
       grep -E "^(openapi:|info:|paths:)" openapi.yaml | head -5
     fi
 
-    # 🧠 v2.0.0-alpha: Store documentation patterns
+    # 🧠 v3.0.0-alpha.1: Store documentation patterns
     echo "🧠 Storing documentation pattern for future learning..."
     ENDPOINT_COUNT=$(grep -c "^  /" openapi.yaml 2>/dev/null || echo "0")
     SCHEMA_COUNT=$(grep -c "^    [A-Z]" openapi.yaml 2>/dev/null || echo "0")
@@ -171,9 +171,9 @@ examples:
     response: "I'll analyze your REST API endpoints and create detailed OpenAPI documentation with request/response examples..."
 ---
 
-# OpenAPI Documentation Specialist v2.0.0-alpha
+# OpenAPI Documentation Specialist v3.0.0-alpha.1
 
-You are an OpenAPI Documentation Specialist with **pattern learning** and **fast generation** capabilities powered by Agentic-Flow v2.0.0-alpha.
+You are an OpenAPI Documentation Specialist with **pattern learning** and **fast generation** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## 🧠 Self-Learning Protocol
 

package/.claude/agents/github/code-review-swarm.md

@@ -85,9 +85,9 @@ hooks:
 # Code Review Swarm - Automated Code Review with AI Agents
 
 ## Overview
-Deploy specialized AI agents to perform comprehensive, intelligent code reviews that go beyond traditional static analysis, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+Deploy specialized AI agents to perform comprehensive, intelligent code reviews that go beyond traditional static analysis, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
-## 🧠 Self-Learning Protocol (v2.0.0-alpha)
+## 🧠 Self-Learning Protocol (v3.0.0-alpha.1)
 
 ### Before Each Review: Learn from Past Reviews
 

package/.claude/agents/github/issue-tracker.md

@@ -89,7 +89,7 @@ hooks:
 # GitHub Issue Tracker
 
 ## Purpose
-Intelligent issue management and project coordination with ruv-swarm integration for automated tracking, progress monitoring, and team coordination, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+Intelligent issue management and project coordination with ruv-swarm integration for automated tracking, progress monitoring, and team coordination, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## Core Capabilities
 - **Automated issue creation** with smart templates and labeling
@@ -98,7 +98,7 @@ Intelligent issue management and project coordination with ruv-swarm integration
 - **Project milestone coordination** with integrated workflows
 - **Cross-repository issue synchronization** for monorepo management
 
-## 🧠 Self-Learning Protocol (v2.0.0-alpha)
+## 🧠 Self-Learning Protocol (v3.0.0-alpha.1)
 
 ### Before Issue Triage: Learn from History
 

package/.claude/agents/github/pr-manager.md

@@ -93,7 +93,7 @@ hooks:
 # GitHub PR Manager
 
 ## Purpose
-Comprehensive pull request management with swarm coordination for automated reviews, testing, and merge workflows, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+Comprehensive pull request management with swarm coordination for automated reviews, testing, and merge workflows, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## Core Capabilities
 - **Multi-reviewer coordination** with swarm agents
@@ -102,7 +102,7 @@ Comprehensive pull request management with swarm coordination for automated revi
 - **Real-time progress tracking** with GitHub issue coordination
 - **Intelligent branch management** and synchronization
 
-## 🧠 Self-Learning Protocol (v2.0.0-alpha)
+## 🧠 Self-Learning Protocol (v3.0.0-alpha.1)
 
 ### Before Each PR Task: Learn from History
 

package/.claude/agents/github/release-manager.md

@@ -82,7 +82,7 @@ hooks:
 # GitHub Release Manager
 
 ## Purpose
-Automated release coordination and deployment with ruv-swarm orchestration for seamless version management, testing, and deployment across multiple packages, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+Automated release coordination and deployment with ruv-swarm orchestration for seamless version management, testing, and deployment across multiple packages, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## Core Capabilities
 - **Automated release pipelines** with comprehensive testing
@@ -91,7 +91,7 @@ Automated release coordination and deployment with ruv-swarm orchestration for s
 - **Release documentation** generation and management
 - **Multi-stage validation** with swarm coordination
 
-## 🧠 Self-Learning Protocol (v2.0.0-alpha)
+## 🧠 Self-Learning Protocol (v3.0.0-alpha.1)
 
 ### Before Release: Learn from Past Releases
 

package/.claude/agents/github/workflow-automation.md

@@ -93,9 +93,9 @@ hooks:
 # Workflow Automation - GitHub Actions Integration
 
 ## Overview
-Integrate AI swarms with GitHub Actions to create intelligent, self-organizing CI/CD pipelines that adapt to your codebase through advanced multi-agent coordination and automation, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+Integrate AI swarms with GitHub Actions to create intelligent, self-organizing CI/CD pipelines that adapt to your codebase through advanced multi-agent coordination and automation, enhanced with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
-## 🧠 Self-Learning Protocol (v2.0.0-alpha)
+## 🧠 Self-Learning Protocol (v3.0.0-alpha.1)
 
 ### Before Workflow Creation: Learn from Past Workflows
 

package/.claude/agents/sparc/architecture.md

@@ -9,7 +9,7 @@ capabilities:
   - interface_design
   - scalability_planning
   - technology_selection
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning
   - context_enhancement
   - fast_processing
@@ -83,7 +83,7 @@ hooks:
 
 # SPARC Architecture Agent
 
-You are a system architect focused on the Architecture phase of the SPARC methodology with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+You are a system architect focused on the Architecture phase of the SPARC methodology with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## 🧠 Self-Learning Protocol for Architecture
 
@@ -244,7 +244,7 @@ console.log(`Architecture aligned with requirements: ${architectureDecision.cons
 // Time: ~2 hours
 ```
 
-### After: Self-learning architecture (v2.0.0-alpha)
+### After: Self-learning architecture (v3.0.0-alpha.1)
 ```typescript
 // 1. GNN finds similar successful architectures (+12.4% better matches)
 // 2. Flash Attention processes large docs (4-7x faster)

package/.claude/agents/sparc/pseudocode.md

@@ -9,7 +9,7 @@ capabilities:
   - data_structures
   - complexity_analysis
   - pattern_selection
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning
   - context_enhancement
   - fast_processing
@@ -80,7 +80,7 @@ hooks:
 
 # SPARC Pseudocode Agent
 
-You are an algorithm design specialist focused on the Pseudocode phase of the SPARC methodology with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+You are an algorithm design specialist focused on the Pseudocode phase of the SPARC methodology with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## 🧠 Self-Learning Protocol for Algorithms
 

package/.claude/agents/sparc/refinement.md

@@ -9,7 +9,7 @@ capabilities:
   - refactoring
   - performance_tuning
   - quality_improvement
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning
   - context_enhancement
   - fast_processing
@@ -96,7 +96,7 @@ hooks:
 
 # SPARC Refinement Agent
 
-You are a code refinement specialist focused on the Refinement phase of the SPARC methodology with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+You are a code refinement specialist focused on the Refinement phase of the SPARC methodology with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## 🧠 Self-Learning Protocol for Refinement
 
@@ -279,7 +279,7 @@ console.log(`Refinement quality improved by ${weeklyImprovement}% this week`);
 // Coverage: ~70%
 ```
 
-### After: Self-learning refinement (v2.0.0-alpha)
+### After: Self-learning refinement (v3.0.0-alpha.1)
 ```typescript
 // 1. Learn from past refactorings (avoid known pitfalls)
 // 2. GNN finds similar code patterns (+12.4% accuracy)

package/.claude/agents/sparc/specification.md

@@ -9,7 +9,7 @@ capabilities:
   - acceptance_criteria
   - scope_definition
   - stakeholder_analysis
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning
   - context_enhancement
   - fast_processing
@@ -75,7 +75,7 @@ hooks:
 
 # SPARC Specification Agent
 
-You are a requirements analysis specialist focused on the Specification phase of the SPARC methodology with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v2.0.0-alpha.
+You are a requirements analysis specialist focused on the Specification phase of the SPARC methodology with **self-learning** and **continuous improvement** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## 🧠 Self-Learning Protocol for Specifications
 

package/.claude/agents/swarm/adaptive-coordinator.md

@@ -128,7 +128,7 @@ Switch to HYBRID when:
   - Experimental optimization required
 ```
 
-## 🧠 Advanced Attention Mechanisms (v2.0.0-alpha)
+## 🧠 Advanced Attention Mechanisms (v3.0.0-alpha.1)
 
 ### Dynamic Attention Mechanism Selection
 

package/.claude/agents/swarm/hierarchical-coordinator.md

@@ -142,7 +142,7 @@ WORKERS WORKERS WORKERS WORKERS
    - Lessons learned documentation
 ```
 
-## 🧠 Advanced Attention Mechanisms (v2.0.0-alpha)
+## 🧠 Advanced Attention Mechanisms (v3.0.0-alpha.1)
 
 ### Hyperbolic Attention for Hierarchical Coordination
 

package/.claude/agents/swarm/mesh-coordinator.md

@@ -185,7 +185,7 @@ class TaskAuction:
         return self.award_task(task, winner[0])
 ```
 
-## 🧠 Advanced Attention Mechanisms (v2.0.0-alpha)
+## 🧠 Advanced Attention Mechanisms (v3.0.0-alpha.1)
 
 ### Multi-Head Attention for Peer-to-Peer Coordination
 

package/.claude/agents/templates/base-template-generator.md

@@ -2,7 +2,28 @@
 name: base-template-generator
 version: "2.0.0-alpha"
 updated: "2025-12-03"
-description: Use this agent when you need to create foundational templates, boilerplate code, or starter configurations for new projects, components, or features. This agent excels at generating clean, well-structured base templates that follow best practices and can be easily customized. Enhanced with pattern learning, GNN-based template search, and fast generation. Examples: <example>Context: User needs to start a new React component and wants a solid foundation. user: 'I need to create a new user profile component' assistant: 'I'll use the base-template-generator agent to create a comprehensive React component template with proper structure, TypeScript definitions, and styling setup.' <commentary>Since the user needs a foundational template for a new component, use the base-template-generator agent to create a well-structured starting point.</commentary></example> <example>Context: User is setting up a new API endpoint and needs a template. user: 'Can you help me set up a new REST API endpoint for user management?' assistant: 'I'll use the base-template-generator agent to create a complete API endpoint template with proper error handling, validation, and documentation structure.' <commentary>The user needs a foundational template for an API endpoint, so use the base-template-generator agent to provide a comprehensive starting point.</commentary></example>
+description: >-
+  Use this agent when you need to create foundational templates, boilerplate code,
+  or starter configurations for new projects, components, or features. This agent
+  excels at generating clean, well-structured base templates that follow best
+  practices and can be easily customized. Enhanced with pattern learning,
+  GNN-based template search, and fast generation.
+
+  Examples: <example>Context: User needs to start a new React component and wants
+  a solid foundation. user: 'I need to create a new user profile component'
+  assistant: 'I'll use the base-template-generator agent to create a comprehensive
+  React component template with proper structure, TypeScript definitions, and
+  styling setup.' <commentary>Since the user needs a foundational template for a
+  new component, use the base-template-generator agent to create a
+  well-structured starting point.</commentary></example>
+
+  <example>Context: User is setting up a new API endpoint and needs a template.
+  user: 'Can you help me set up a new REST API endpoint for user management?'
+  assistant: 'I'll use the base-template-generator agent to create a complete API
+  endpoint template with proper error handling, validation, and documentation
+  structure.' <commentary>The user needs a foundational template for an API
+  endpoint, so use the base-template-generator agent to provide a comprehensive
+  starting point.</commentary></example>
 color: orange
 metadata:
   v2_capabilities:
@@ -14,7 +35,7 @@ hooks:
   pre_execution: |
     echo "🎨 Base Template Generator starting..."
 
-    # 🧠 v2.0.0-alpha: Learn from past successful templates
+    # 🧠 v3.0.0-alpha.1: Learn from past successful templates
     echo "🧠 Learning from past template patterns..."
     SIMILAR_TEMPLATES=$(npx claude-flow@alpha memory search-patterns "Template generation: $TASK" --k=5 --min-reward=0.85 2>/dev/null || echo "")
     if [ -n "$SIMILAR_TEMPLATES" ]; then
@@ -32,7 +53,7 @@ hooks:
   post_execution: |
     echo "✅ Template generation completed"
 
-    # 🧠 v2.0.0-alpha: Store template patterns
+    # 🧠 v3.0.0-alpha.1: Store template patterns
     echo "🧠 Storing template pattern for future reuse..."
     FILE_COUNT=$(find . -type f -newer /tmp/template_start 2>/dev/null | wc -l)
     REWARD="0.9"
@@ -68,7 +89,7 @@ hooks:
       --critique "Error: {{error_message}}" 2>/dev/null || true
 ---
 
-You are a Base Template Generator v2.0.0-alpha, an expert architect specializing in creating clean, well-structured foundational templates with **pattern learning** and **intelligent template search** powered by Agentic-Flow v2.0.0-alpha.
+You are a Base Template Generator v3.0.0-alpha.1, an expert architect specializing in creating clean, well-structured foundational templates with **pattern learning** and **intelligent template search** powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## 🧠 Self-Learning Protocol
 

package/.claude/agents/templates/sparc-coordinator.md

@@ -10,7 +10,7 @@ capabilities:
   - methodology_compliance
   - result_synthesis
   - progress_tracking
-  # NEW v2.0.0-alpha capabilities
+  # NEW v3.0.0-alpha.1 capabilities
   - self_learning
   - hierarchical_coordination
   - moe_routing
@@ -98,7 +98,7 @@ hooks:
 # SPARC Methodology Orchestrator Agent
 
 ## Purpose
-This agent orchestrates the complete SPARC (Specification, Pseudocode, Architecture, Refinement, Completion) methodology with **hierarchical coordination**, **MoE routing**, and **self-learning** capabilities powered by Agentic-Flow v2.0.0-alpha.
+This agent orchestrates the complete SPARC (Specification, Pseudocode, Architecture, Refinement, Completion) methodology with **hierarchical coordination**, **MoE routing**, and **self-learning** capabilities powered by Agentic-Flow v3.0.0-alpha.1.
 
 ## 🧠 Self-Learning Protocol for SPARC Coordination
 
@@ -349,7 +349,7 @@ console.log(`Methodology efficiency improved by ${weeklyImprovement}% this week`
 // Time: ~1 week per cycle
 ```
 
-### After: Self-learning SPARC coordination (v2.0.0-alpha)
+### After: Self-learning SPARC coordination (v3.0.0-alpha.1)
 ```typescript
 // 1. Hierarchical coordination (queen-worker model)
 // 2. MoE routing to optimal phase specialists

package/.claude/helpers/auto-commit.sh

@@ -90,7 +90,7 @@ Automatic checkpoint created by Claude Code
 
 🤖 Generated with [Claude Code](https://claude.com/claude-code)
 
-Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>" --quiet 2>/dev/null; then
+Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>" --quiet 2>/dev/null; then
         log "Created commit: $message"
 
         # Push if enabled

package/.claude/helpers/auto-memory-hook.mjs

@@ -139,17 +139,30 @@ async function loadMemoryPackage() {
     } catch { /* fall through */ }
   }
 
-  // Strategy 2: npm installed @claude-flow/memory
+  // Strategy 2: Use createRequire for CJS-style resolution (handles nested node_modules
+  // when installed as a transitive dependency via npx ruflo / npx claude-flow)
+  try {
+    const { createRequire } = await import('module');
+    const require = createRequire(join(PROJECT_ROOT, 'package.json'));
+    return require('@claude-flow/memory');
+  } catch { /* fall through */ }
+
+  // Strategy 3: ESM import (works when @claude-flow/memory is a direct dependency)
   try {
     return await import('@claude-flow/memory');
   } catch { /* fall through */ }
 
-  // Strategy 3: Installed via @claude-flow/cli which includes memory
-  const cliMemory = join(PROJECT_ROOT, 'node_modules/@claude-flow/memory/dist/index.js');
-  if (existsSync(cliMemory)) {
-    try {
-      return await import(`file://${cliMemory}`);
-    } catch { /* fall through */ }
+  // Strategy 4: Walk up from PROJECT_ROOT looking for @claude-flow/memory in any node_modules
+  let searchDir = PROJECT_ROOT;
+  const { parse } = await import('path');
+  while (searchDir !== parse(searchDir).root) {
+    const candidate = join(searchDir, 'node_modules', '@claude-flow', 'memory', 'dist', 'index.js');
+    if (existsSync(candidate)) {
+      try {
+        return await import(`file://${candidate}`);
+      } catch { /* fall through */ }
+    }
+    searchDir = dirname(searchDir);
   }
 
   return null;
@@ -335,6 +348,9 @@ async function doStatus() {
 
 const command = process.argv[2] || 'status';
 
+// Suppress unhandled rejection warnings from dynamic import() failures
+process.on('unhandledRejection', () => {});
+
 try {
   switch (command) {
     case 'import': await doImport(); break;
@@ -342,9 +358,11 @@ try {
     case 'status': await doStatus(); break;
     default:
       console.log('Usage: auto-memory-hook.mjs <import|sync|status>');
-      process.exit(1);
+      break;
   }
 } catch (err) {
   // Hooks must never crash Claude Code - fail silently
-  dim(`Error (non-critical): ${err.message}`);
+  try { dim(`Error (non-critical): ${err.message}`); } catch (_) {}
 }
+// Force clean exit — process.exitCode alone isn't enough if async errors override it
+process.exit(0);

package/.claude/helpers/hook-handler.cjs

@@ -50,8 +50,37 @@ const intelligence = safeRequire(path.join(helpersDir, 'intelligence.cjs'));
 // Get the command from argv
 const [,, command, ...args] = process.argv;
 
-// Get prompt from environment variable (set by Claude Code hooks)
-const prompt = process.env.PROMPT || process.env.TOOL_INPUT_command || args.join(' ') || '';
+// Read stdin with timeout — Claude Code sends hook data as JSON via stdin.
+// Timeout prevents hanging when stdin is not properly closed (common on Windows).
+async function readStdin() {
+  if (process.stdin.isTTY) return '';
+  return new Promise((resolve) => {
+    let data = '';
+    const timer = setTimeout(() => {
+      process.stdin.removeAllListeners();
+      process.stdin.pause();
+      resolve(data);
+    }, 500);
+    process.stdin.setEncoding('utf8');
+    process.stdin.on('data', (chunk) => { data += chunk; });
+    process.stdin.on('end', () => { clearTimeout(timer); resolve(data); });
+    process.stdin.on('error', () => { clearTimeout(timer); resolve(data); });
+    process.stdin.resume();
+  });
+}
+
+async function main() {
+  let stdinData = '';
+  try { stdinData = await readStdin(); } catch (e) { /* ignore stdin errors */ }
+
+  let hookInput = {};
+  if (stdinData.trim()) {
+    try { hookInput = JSON.parse(stdinData); } catch (e) { /* ignore parse errors */ }
+  }
+
+  // Merge stdin data into prompt resolution: prefer stdin fields, then env, then argv
+  const prompt = hookInput.prompt || hookInput.command || hookInput.toolInput
+    || process.env.PROMPT || process.env.TOOL_INPUT_command || args.join(' ') || '';
 
 const handlers = {
   'route': () => {
@@ -105,8 +134,8 @@ const handlers = {
   },
 
   'pre-bash': () => {
-    // Basic command safety check
-    const cmd = prompt.toLowerCase();
+    // Basic command safety check — prefer stdin command data from Claude Code
+    const cmd = (hookInput.command || prompt).toLowerCase();
     const dangerous = ['rm -rf /', 'format c:', 'del /s /q c:\\', ':(){:|:&};:'];
     for (const d of dangerous) {
       if (cmd.includes(d)) {
@@ -122,10 +151,11 @@ const handlers = {
     if (session && session.metric) {
       try { session.metric('edits'); } catch (e) { /* no active session */ }
     }
-    // Record edit for intelligence consolidation
+    // Record edit for intelligence consolidation — prefer stdin data from Claude Code
     if (intelligence && intelligence.recordEdit) {
       try {
-        const file = process.env.TOOL_INPUT_file_path || args[0] || '';
+        const file = hookInput.file_path || (hookInput.toolInput && hookInput.toolInput.file_path)
+          || process.env.TOOL_INPUT_file_path || args[0] || '';
         intelligence.recordEdit(file);
       } catch (e) { /* non-fatal */ }
     }
@@ -216,17 +246,27 @@ const handlers = {
   },
 };
 
-// Execute the handler
-if (command && handlers[command]) {
-  try {
-    handlers[command]();
-  } catch (e) {
-    // Hooks should never crash Claude Code - fail silently
-    console.log(`[WARN] Hook ${command} encountered an error: ${e.message}`);
+  // Execute the handler
+  if (command && handlers[command]) {
+    try {
+      handlers[command]();
+    } catch (e) {
+      // Hooks should never crash Claude Code - fail silently
+      console.log(`[WARN] Hook ${command} encountered an error: ${e.message}`);
+    }
+  } else if (command) {
+    // Unknown command - pass through without error
+    console.log(`[OK] Hook: ${command}`);
+  } else {
+    console.log('Usage: hook-handler.cjs <route|pre-bash|post-edit|session-restore|session-end|pre-task|post-task|stats>');
   }
-} else if (command) {
-  // Unknown command - pass through without error
-  console.log(`[OK] Hook: ${command}`);
-} else {
-  console.log('Usage: hook-handler.cjs <route|pre-bash|post-edit|session-restore|session-end|pre-task|post-task|stats>');
 }
+
+// Hooks must ALWAYS exit 0 — Claude Code treats non-zero as "hook error"
+// and skips all subsequent hooks for the event.
+process.exitCode = 0;
+main().catch((e) => {
+  try { console.log(`[WARN] Hook handler error: ${e.message}`); } catch (_) {}
+}).finally(() => {
+  process.exit(0);
+});