ko-qmd 2.8.3-ko.2

package/CHANGELOG.md

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+# Changelog
+
+## [Unreleased]
+
+## [2.8.3-ko.2] - 2026-09-17
+
+### Changes
+
+- Published to npm as `ko-qmd`. Install with `npm i -g ko-qmd`
+  after `npm uninstall -g @tobilu/qmd` (both ship a `qmd` bin). `publish.yml` is
+  back: pushing a `v*` tag runs the tests, publishes with provenance and creates
+  the GitHub release. The GitHub-tag install path still works for unpublished
+  commits.
+- New bench tooling: `scripts/bench-vault-paraphrase.ts` builds a paraphrase
+  goldset from a vault by asking a local model, through ollama, for the question
+  someone would type when they do not know the vocabulary a document is written
+  in. The existing `bench-vault-goldset.mjs` harvests the document's own words,
+  which measures lexical matching; this measures the case that fails it. Every
+  candidate passes four mechanical gates and a separate verification call that
+  rejects fluent questions about things the document does not discuss. Defaults
+  to `qwen3:4b`; takes `--minutes` to stop on a time budget, `--seed` to sample
+  the vault when it does, and `--max-df` to tune which heading words a question
+  may not reuse.
+- `GenerateOptions` no longer has a `model` field. `LlamaCpp.generate` never read
+  it: the model is fixed per instance from `generateModel` at construction, so a
+  caller passing `model` got the instance's model back with no error and no
+  indication the request was dropped. Construct a second `LlamaCpp` to generate
+  with a different model. Nothing in the package passed the field.
+
+### Fixes
+
+- The release pre-push hook reads CI from the remote being pushed to. It asked
+  `gh api repos/{owner}/{repo}`, which resolves through gh's own remote
+  heuristic: with an `upstream` remote present that is the repo this one was
+  forked from, so every commit that exists only here answered 422. The hook
+  reported "no runs found" and let the tag through unverified. An API error now
+  aborts instead of reading as "CI has not started".
+
+## [2.8.3-ko.1] - 2026-09-16
+
+### Changes
+
+- ko-vault bench fixture pins the package's default embedding model
+  (Qwen3-Embedding-0.6B-Q8_0) instead of embeddinggemma. Measured on the same
+  tree: `vector_r5` 0.9861 → 1.0000, `hybrid_r5` 0.9722 → 0.9861, `bm25_r5`
+  unchanged at 0.6528. Numbers and caveats in
+  `test/fixtures/ko-vault/BASELINE.md`.
+- README.md states what this distribution is and links README.ko.md.
+- Hangul lex queries also strip a verbal or nominalizing ending (`토큰화하는` →
+  `토큰화`, `검색하기` → `검색`) and unwind a two-particle chain (`청킹에서의` →
+  `청킹`). ko-vault bench `bm25_r5` 0.6635 → 0.7212 on a 52-query goldset, with
+  the original 36 queries unchanged at 0.6528.
+- Hangul stems also cover a bare `한`/`된` ending (`필요한` → `필요`) and the
+  하↔해 contraction (`더하` ↔ `더해`), so a query stem meets the contracted spelling
+  documents actually use. `bm25_r5` 0.7212 → 0.7404, hybrid and full 1.0000.
+- Long Korean queries no longer return nothing. `searchFTS` retries the same
+  terms ORed when the strict AND matches no document at all (three terms
+  minimum). A natural question is a sentence, and requiring every word of it
+  present matched nothing: on a 30-query Korean paraphrase goldset lex recall@5
+  was 0.0000 and is now 0.5667. The synthetic ko-vault fixture moves with it,
+  `bm25_r5` 0.7404 → 0.9519.
+- Hybrid RRF weights rebalanced for Korean: vector lists count half, relaxed
+  (ORed) lex lists count half again and never count as a strong signal, and
+  expansion-derived lists move 1.0 → 0.75 so the original query's vector list
+  still outranks a lex expansion. Hybrid recall@5 on 240 exact-phrase queries
+  0.9167 → 0.9583, on the paraphrase goldset 0.8333 → 0.8667. Sweep and caveats
+  in `test/fixtures/ko-vault/BASELINE.md`.
+- Hangul lex queries split script-mixed terms into runs and AND them
+  (`SKILL.md계약의핵심` → `skill` AND `md` AND `계약의핵심`). Before this the glued
+  token was one phrase that matches nothing, and the hyphen/dot branches kept the
+  Hangul run glued too. Measured on a real 232-document Korean vault with a
+  240-query goldset: `bm25_r5` 0.9042 → 0.9333, `bm25_mrr` 0.8666 → 0.8937.
+- `scripts/bench-vault.sh` and `scripts/bench-vault-goldset.mjs` run the Korean
+  bench over any real vault, building the goldset from that vault's own headings
+  and body clauses. Nothing from the vault is copied into the repo.
+- ko-vault goldset grew 36 → 52 with particle chains, verb endings and joined
+  compounds.
+- `qmd bench` no longer needs `expected_in_top_k` on every fixture entry. It was
+  required in practice: omitting it made the result limit NaN and every backend
+  returned zero results with no error.
+
+## [2.8.3-ko.0] - 2026-09-16
+
+### Fixes
+
+- pnpm consumers install this package from a git tag, where pnpm runs `prepare`
+  (tsc only). Two things broke that on Windows: a stale `pnpm-lock.yaml`
+  (`ERR_PNPM_OUTDATED_LOCKFILE`) and `pnpm.onlyBuiltDependencies`, which made
+  pnpm build better-sqlite3 from source in an environment with no Visual Studio.
+  The lockfile is regenerated and the built-dependency list is now empty — the
+  `dist` build needs no native module, and consumers build their own. Run
+  `pnpm approve-builds` when developing this repo with pnpm. npm installs were
+  unaffected.
+
+### Changes
+
+- ko-qmd distribution: package renamed to `ko-qmd`
+  (`2.8.3-ko.0`), consumed from git tags instead of npm (`publish.yml`
+  removed). CI adds a `windows-latest` Node 22 job and an Electron 39 smoke job
+  that imports the SDK with dynamic `import()` and runs `searchLex`. See
+  `README.ko.md`.
+- Hangul lex queries: an unquoted Korean word also matches its stem with one
+  trailing particle or `기` stripped (`검색을` → `("검 색" OR "검 색 을")`,
+  stem ≥2 syllables). Quoted phrases and Han/kana terms are unchanged. ko-vault
+  bench `bm25_r5` 0.6250 → 0.6528.
+- Hangul syllable bigrams in the FTS index: each indexed field carries the
+  bigrams of its Hangul runs after the character tokens, and a plain Korean word
+  queries bigram OR character phrases of the word and its stem. Character-phrase
+  and quoted-phrase matching is unchanged. `FTS_CJK_NORMALIZED_VERSION` is now
+  `"2"`, so existing indexes rebuild FTS once on open. ko-vault bench
+  `bm25_r5` 0.6528 → 0.6528 (no measured gain on the fixture).
+- Korean defaults: the default embedding model is now
+  `hf:Qwen/Qwen3-Embedding-0.6B-GGUF/Qwen3-Embedding-0.6B-Q8_0.gguf`
+  (1024 dimensions; upstream default is embeddinggemma-300M). Reranker and
+  query-expansion defaults are unchanged. Existing indexes need `qmd embed -f`;
+  set `models: embed:` or `QMD_EMBED_MODEL` to keep embeddinggemma. The qmd skill
+  gains a "Korean queries" section. Hangul handling and ko-vault bench numbers
+  are in `README.ko.md`.
+
+## [2.8.3] - 2026-08-16
+
+### Security
+
+- `qmd update` no longer runs a project-local `.qmd/index.yml`'s `update:`
+  commands without approval (#886). That file arrives with a `git clone` and is
+  adopted automatically for any command run inside the tree, so cloning a
+  repository and running `qmd update` executed shell commands chosen by whoever
+  wrote it. On a terminal QMD now lists the commands and asks; with nobody to
+  ask it skips them and keeps indexing. Approvals are recorded per config file
+  and per command set in `<config dir>/trusted.json`, so editing a command — or
+  a `git pull` that rewrites one — asks again. New `qmd trust`,
+  `qmd trust list` and `qmd trust revoke` manage approvals, and
+  `QMD_TRUST_UPDATE_HOOKS=1` opts unattended runs back in. Commands in your own
+  `~/.config/qmd/*.yml`, including anything `qmd collection update-cmd` writes,
+  are unaffected.
+
+- The same project-local trust gate now covers collection `path` values that
+  resolve outside the project and non-default `models.embed` / `models.rerank`
+  / `models.generate` URIs (#889). In-project paths still index unattended;
+  out-of-project directories are skipped until `qmd trust`, and custom model
+  URIs are not loaded or downloaded. `QMD_TRUST_LOCAL_CONFIG=1` opts unattended
+  runs back in (and `QMD_TRUST_UPDATE_HOOKS=1` still does). `qmd collection
+  add` records trust as it writes, the same way `update-cmd` does.
+
+- Indexing no longer follows file symlinks or glob `../` / absolute patterns
+  out of the collection directory. `fast-glob` already skipped symlinked
+  directories, but a file symlink (or a mask like `../**/*.md`) still resolved
+  via `realpath` and ingested the target. `qmd://` filesystem resolution uses
+  the same containment check, so `qmd://collection/../../../etc/passwd` no
+  longer produces a path outside the collection.
+
+- `qmd mcp --http` now validates the `Origin` and `Host` headers on every
+  request and answers `403` when they name anything but a loopback address
+  (#881). Binding to localhost is no defence against the user's own browser:
+  a page can re-point its hostname at `127.0.0.1` (DNS rebinding) and read
+  the indexed corpus through `POST /query` or `POST /mcp`. Requests with no
+  `Origin` (curl, MCP clients, editors) are unaffected. Extend the allowlists
+  with `QMD_ALLOWED_ORIGINS` / `QMD_ALLOWED_HOSTS`, or set
+  `QMD_ALLOWED_ORIGINS=*` behind your own authenticating proxy. A wildcard
+  bind (`--host 0.0.0.0`) skips the host check and warns at startup.
+
+### Changed
+
+- Dependencies: `node-llama-cpp` 3.18.1 → **3.20.0** (llama.cpp b8390 → b10361, 2026-08-11). Also safe patch/minors: `picomatch` 4.0.4 → 4.0.5, `web-tree-sitter` 0.26.8 → 0.26.12, `tsx` 4.21.0 → 4.23.12, `vitest` 3.2.4 → 3.2.7. No zod/vitest major; `@modelcontextprotocol/server` stays 2.0.0 (no 2.x patch). `flake.nix` FOD hashes are not updated here.
+- `generate` and query expansion now await `LlamaContextSequence.dispose()` before disposing the parent context. node-llama-cpp 3.20 made sequence dispose async; the library's context-onDispose path does not wait.
+
+- MCP server now speaks protocol revision **2026-07-28** via the official
+  TypeScript SDK 2.x (`@modelcontextprotocol/server`). HTTP is sessionless
+  (no `Mcp-Session-Id`, no initialize handshake, no idle-session TTL / #816
+  reaper). Clients send version and capabilities in `_meta`; `server/discover`
+  is implemented; Streamable HTTP POST requires `Mcp-Method` / `Mcp-Name`
+  (mismatch → `-32020`); `tools/list` is deterministic and carries `ttlMs` /
+  `cacheScope`. 2025-era stdio clients still work (`serveStdio` dual-speak);
+  2025-era HTTP `initialize` is answered per-request without minting a
+  session. Existing tools (`query` / `get` / `multi_get` / `status`), stdio
+  EOF shutdown, and named-index daemon PIDs are unchanged. No release.
+
+- `qmd pull` (and implicit model downloads in `embed`/`query`) no longer print
+  node-llama-cpp's download progress bar. The bar redraws every few kilobytes
+  and flooded agent transcripts with thousands of tokens (#776). Pass
+  `qmd pull --progress` to show it on an interactive terminal.
+- `--full-path` no longer degrades silently when a result cannot be resolved on
+  disk (#785). A fallback there means the file moved or was deleted since the
+  last index, so `search`, `query`, `get` and `multi-get` now print a notice to
+  stderr naming how many results fell back and suggesting `qmd update`; stdout
+  stays machine-readable.
+- `search`/`query` now decide per result whether to show the docid under
+  `--full-path`, matching `multi-get` and `get`: a result that resolved shows
+  its on-disk path and no docid, one that did not keeps its `qmd://` URI *and*
+  its docid, so it is still addressable. Previously the docid was dropped for
+  every row whenever the flag was set, leaving unresolved rows with neither a
+  usable path nor an identifier.
+- `search --format csv` always emits the `docid` column, empty for rows that
+  resolved to an on-disk path. Under `--full-path` the header previously
+  dropped the column entirely — which also disagreed with the empty-result
+  header, always printed with `docid`. Column positions are now stable across
+  runs and formats.
+
+### Fixed
+
+- Concurrent first-open of a cold index no longer fails with
+  `table documents_fts already exists` on Bun/macOS. FTS5
+  `CREATE VIRTUAL TABLE IF NOT EXISTS` is not atomic across WAL
+  connections: two processes can both see a missing table on their
+  schema snapshot and the loser throws. Table create and legacy-schema
+  repair now use the same `BEGIN IMMEDIATE` + double-check as the FTS
+  sync triggers, and treat a concurrent "already exists" as success
+  when the table is present.
+
+- Nix flake `qmd-node-modules` FOD hashes updated for x86_64-linux and
+  aarch64-darwin after the MCP SDK 2.0 bump. `nix build` / Nix GHA was
+  failing with a fixed-output hash mismatch.
+
+- CJK FTS rebuild no longer skips leftover `fts5(name, body, content='documents')`
+  tables when `fts_cjk_normalized_version` is already stamped, and schema
+  repair now checks live FTS columns (`PRAGMA table_info`) as well as
+  `sqlite_master.sql`. The MCP HTTP test helper still seeds that legacy
+  table; `startMcpHttpServer` / `createStore` on it must not throw
+  `no such column: T.name` (#792 regression).
+
+- `qmd collection add --glob` is no longer silently ignored. parseArgs ran
+  with `strict: false`, so OpenClaw's `--glob memory.md` (and any other
+  `--glob`) fell through, the default `**/*.md` was used, and a second
+  collection on the same path collided as a duplicate instead of indexing
+  the requested mask (#536). `--glob` is now an alias for `--mask`.
+
+- The `bin/qmd` trampoline now execs `process.execPath` instead of
+  re-resolving `node` from PATH. Native addons (`better-sqlite3`) are
+  compiled for the Node that installed qmd; a version manager (nvm, fnm,
+  mise) selecting a different major in the working directory used to spawn
+  that other binary and fail with `NODE_MODULE_VERSION` / `ERR_DLOPEN_FAILED`
+  (#577 leftover; #319). `bun bin/qmd` still resolves `node` from PATH so
+  Node-ABI addons are not loaded into bun.
+
+- `qmd update` / `qmd collection add` no longer swallow unreadable files
+  silently (#460). `readFileSync` failures (ETIMEDOUT on APFS compressed
+  files, EAGAIN, EACCES, …) still skip the file so the rest of the collection
+  indexes, but the CLI now warns with the path and error code and reports
+  the skip count. The SDK `update()` result includes `skipped`.
+
+- The architecture diagram no longer draws Vec expansions into BM25 search
+  (#680). `lex` expansions are FTS-only; `vec` and `hyde` expansions are
+  vector-only. The original query still goes to both backends.
+
+- `qmd bench` no longer runs to a wall of 0.00 when the fixture collection is
+  missing or empty (#716). It errors up front with the same "Collection not
+  found" / index hint as `qmd search -c`, and if every backend still scores
+  zero it warns on stderr to check `qmd ls`.
+
+- `qmd cleanup` now reclaims the content and FTS space left behind after a
+  wrong-directory `qmd update`. Deactivating files (the next update in the
+  right directory) only tombstoned the `documents` rows; cleanup deleted those
+  rows and vacuumed, but never dropped the unreferenced `content` hashes and
+  never ran FTS5 `optimize`, so `documents_fts_data` kept the old bodies
+  (#550). Cleanup now deletes inactive docs, then orphaned content, then
+  compact FTS, then vacuum. `--dry-run` reports the content hashes too.
+
+- Concurrent `query` calls with `rerank: true` on a cold MCP server no longer
+  race `ensureRerankContexts()`. Embed already serialized context creation;
+  rerank did not, so two overlapping first queries both saw an empty pool,
+  both created ranking contexts, and the inactivity timer disposed the loser
+  (`Object is disposed`, #682). Callers now await the in-flight create.
+
+- Embedding-context pool size no longer assumes every GGUF costs 150 MB of
+  VRAM (the nomic-embed figure). Larger models such as Qwen3-Embedding-0.6B
+  are ~1190 MB per 2048-token context; opening 8 of those exhausted an 8 GB
+  card so `qmd query` failed with `Failed to create any rerank context` even
+  though the reranker itself was fine. The pool is now sized from the weight
+  file, and 1 GB is reserved for the reranker (#799). Default
+  embeddinggemma/nomic throughput is unchanged. `QMD_EMBED_PARALLELISM` still
+  overrides.
+
+- Multi-collection `-c A -c B` (and SDK/MCP `collections: [A, B]`) no longer
+  searches globally then post-filters. A large unrelated collection could fill
+  the FTS/ANN top-k so the requested collections vanished, yielding false-empty
+  results even though each collection matched on its own. `searchFTS` /
+  `searchVec` now search each requested collection, then merge by score
+  (#775). Single-collection exact-scan (#791, #803) is unchanged.
+
+- Query expansion no longer consumes caller `intent`, and a cached expansion
+  whose sub-queries all miss is dropped instead of replaying forever (#818).
+  Intent still steers reranking and snippet/chunk selection; it just no longer
+  enters the expansion prompt or cache key, where the model copied meta-language
+  ("so I can compare spend settings") into lex/vec terms that matched nothing.
+
+- Files whose names differ only in the characters the legacy slug collapsed to
+  `-` (spaces, underscores) no longer evict each other from the index (#717).
+  The handalized-path migration now skips any row whose path is still owned by
+  a file in the current scan, so it only adopts genuinely stale pre-2.6 rows.
+  `qmd get` and `qmd ls <prefix>` also match `_` and `%` in paths literally
+  instead of as SQL `LIKE` wildcards, so `qmd get 2026_06_16.md` no longer
+  returns a sibling `2026-06-16.md`.
+
+- CLI `multi-get` and SDK/MCP `multi_get` now share one comma-list resolver.
+  Collection-prefixed paths (`qmd/docs/SYNTAX.md`) work in both transports,
+  unanchored `LIKE '%name'` no longer silently fetches a different document
+  for a filename fragment (`NTAX.md` ≠ `SYNTAX.md`), and ambiguous names
+  across collections error with the candidate list instead of `LIMIT 1` (#759).
+
+- The Nix flake wrapper now seeds the same pre-import env as `bin/qmd`.
+  Nix installs exec `bun src/cli/qmd.ts` directly, so they previously skipped
+  the launcher: `qmd mcp` could leak llama/ggml native logs onto JSON-RPC
+  stdio, and Darwin CLI exits dumped a ggml Metal residency-set stack trace
+  after an otherwise successful query. The wrapper now quiets those logs for
+  `mcp` and sets `GGML_METAL_NO_RESIDENCY=1` on Darwin unless
+  `QMD_METAL_KEEP_RESIDENCY=1` (#723).
+
+- Rerank context creation no longer swallows the real failure. A VRAM OOM or
+  corrupt model previously produced only `Reranker unavailable — skipping
+  reranking` (and a dead identical retry whose comment claimed it disabled
+  flash attention, which ranking contexts never supported). The warning now
+  includes the underlying message so the two cases are distinguishable (#782).
+
+- The Nix flake package now ships `skills/` next to `src/` in `$out/lib/qmd/`.
+  `findPackageRoot()` walks up from the wrapped `src/cli/qmd.ts` looking for a
+  sibling `skills/` directory; without it, `qmd skill show` and `qmd skills list`
+  always failed with "QMD skill not found" on Nix-installed binaries (#722).
+
+- `/release` step 1 no longer points at a missing script. `skills/release/scripts/release-context.sh`
+  now exists: it silently installs git hooks and prints version info, working-tree
+  status, commits and files since the last tag, `[Unreleased]`, and the previous
+  changelog entry. The skill's process list also drops the duplicate step 7 and
+  checks dependency updates before cutting the release (#796).
+
+- `store.searchVec()` (and SDK `searchVector()`) now embed the query with the
+  store's pinned embed model instead of the global `QMD_EMBED_MODEL`. A store
+  created with a non-default `models.embed` previously failed with
+  `Dimension mismatch ... Expected N ... received M` and loaded the wrong
+  (often much larger) model at query time. Hybrid/precomputed/session search
+  paths were unaffected and stay unchanged (#690).
+
+- `qmd collection add --mask "a.md,*.txt"` now indexes the union of each
+  pattern. The comma-separated form was documented and commonly guessed, but
+  the joined string was passed to fast-glob as one literal glob, so it
+  matched zero files with no error. Brace form `{a.md,*.txt}` is unchanged.
+  The same split applies on `qmd update` for stored comma-list masks (#557).
+
+- NixOS / immutable-root installs no longer crash `qmd embed` with EACCES
+  when node-llama-cpp tries to compile llama.cpp into a read-only
+  `node_modules`. The flake wrapper puts Nix's glibc and libstdc++ on
+  `LD_LIBRARY_PATH` so prebuilt binaries can `dlopen` them, and
+  `getLlama()` uses `build: "never"` when the llama directory is not
+  writable (#574).
+
+- CJK FTS rebuild no longer raises "database is busy" when flushing insert
+  batches. The streaming `.iterate()` cursor stayed open across
+  `BEGIN` on the same connection; the scan now uses keyset-paginated
+  `LIMIT` batches so each SELECT finalizes before the insert transaction
+  starts (#797).
+
+- Quoted FTS phrases containing dotted tokens (e.g. `"1.0.21"`) now match the
+  indexed document. The porter unicode61 tokenizer stores dotted strings as
+  adjacent parts, but phrase sanitization stripped the dots into a single
+  token (`1021`) that could never hit. Dotted tokens inside quotes are split
+  into adjacent phrase terms, matching the bare-term rewrite from #563 (#757).
+
+- `scripts/build.mjs` no longer passes `shell: true` to `spawnSync` on Windows.
+  With the default Node install path (`C:\Program Files\nodejs\node.exe`),
+  `cmd.exe` split the unquoted `process.execPath` at the space, the `tsc`
+  spawn failed, and `prepare` could still report success with no `dist/` —
+  leaving `bin/qmd` at "not built". The helper always receives a real binary
+  path plus an args array, so no shell is needed. A spawn error now prints
+  the missing binary path instead of failing silently. (#681)
+
+- Case-sensitive collections no longer collapse distinct document identities that
+  differ only by path casing. The implicit `COLLATE NOCASE` legacy migration was
+  unsafe for filesystems that contain both `README.md` and `readme.md`; case-only
+  legacy migrations must now be explicit and operator-reviewed (#801).
+
+- `cleanupOrphanedVectors` now runs its orphan count and both DELETEs in a
+  single immediate transaction. An interruption between the two DELETEs
+  (crash, `SQLITE_BUSY`) could desync `vectors_vec` from `content_vectors`,
+  leaving stale metadata rows that make a later reactivation of the same
+  content hash look already-embedded — so `qmd embed` skips it and the
+  document becomes silently unsearchable by vector, with no orphan left to
+  clean up (#766).
+
+- `qmd embed` no longer splits a UTF-16 surrogate pair (emoji, etc.) across a
+  chunk boundary. A chunk ending or starting mid-pair produced an unpaired
+  surrogate in the chunk text, which some remote embedding APIs reject as
+  invalid JSON — permanently failing that chunk on every retry, since the
+  boundary calculation is deterministic. This covers both the character-based
+  chunker and `chunkDocumentByTokens`'s recursive re-splitting for
+  astral-plane-dense content, which could previously drive the char budget
+  low enough to reproduce the same split (#777).
+
+- `insertContext` looks up `store_collections` by name. #754 retargeted the
+  query from the dropped `collections` table but left `WHERE id = ?`, and
+  `store_collections` has `name TEXT PRIMARY KEY` with no `id` column — the
+  call threw `no such column: id`. Matches `deleteContext` /
+  `updateStoreContext` (#853).
+
+- `qmd collection add` with no path argument now errors with usage instead of
+  silently indexing the current working directory (#684). Pass `.` to index
+  CWD, matching the documented examples.
+
+- `qmd status` reports orphaned embedding chunks, `qmd update` hints when they
+  exceed 10% of vectors, and `qmd cleanup --dry-run` previews what would be
+  removed. Incremental update still does not auto-prune vectors (a transient
+  empty mount would otherwise force a full re-embed) (#768).
+
+- `qmd --index <name> mcp --http --daemon` now scopes PID/log files per index
+  (`mcp-<name>.pid`) and passes the resolved database path to the child, so a
+  named-index daemon no longer collides with the default `mcp.pid` or opens
+  the default store (#772).
+
+- Opening a store no longer throws `SQLiteError: no such column: T.name` when
+  `documents_fts` is still the legacy `fts5(name, body, content='documents')`
+  schema. `CREATE VIRTUAL TABLE IF NOT EXISTS` left that table in place, and
+  the CJK FTS rebuild's `DELETE FROM documents_fts` compiled against
+  `documents.name`, which does not exist (#792).
+
+- Rerank cache keys now include the resolved `models.rerank` URI, so swapping
+  the configured reranker no longer serves the previous model's cached scores
+  (#764).
+
+- `vsearch -c <collection>` no longer returns empty results for small
+  collections crowded out of the global ANN candidate pool. `searchVec` now
+  exact-scans the collection's vectors with `vec_distance_cosine` when the
+  set is within 20k rows (ANN + post-filter cannot see collections that never
+  enter global top-k, and sqlite-vec caps `k` at 4096 so a larger multiplier
+  alone is not enough). Larger collections still use capped ANN over-fetch
+  (#791, #803).
+
+- `multi-get --format files` now emits the docid as its own CSV field
+  (`#docid,path,...`) instead of prepending it into the path field with a
+  space (`#docid path,...`), matching `search --format files` and keeping
+  naive comma-splitting usable (#760).
+
+- `qmd embed` now takes an exclusive process lock (`.qmd-embed.lock` next to
+  the index DB) so concurrent invocations no longer race on `vectors_vec`
+  and fail with `UNIQUE constraint failed: vectors_vec.hash_seq`. A second
+  embed exits early with `Another embed process is already running. Skipping.`
+  Stale locks from crashed processes are recovered via PID identity checks
+  (#825).
+
+- windows prepare fix #778 keeps dist build #824
+
+- `qmd mcp` (stdio) now shuts down gracefully when stdin reaches EOF instead
+  of orphaning to PID 1 when the parent MCP client dies (#751): the server
+  closes its transport, gives in-flight request handlers a bounded window to
+  settle, closes the store (which disposes its llama.cpp instance), and lets
+  the process drain via `process.exitCode` (no forced `process.exit()`, which
+  has caused exit-time native crashes before).
+
+- `qmd --version` no longer reports an unrelated repository's commit (#787).
+  The commit was discovered at runtime with `git -C <installDir> rev-parse`,
+  and `git -C` walks *up*, so any install nested inside another checkout
+  reported that checkout's HEAD — a global npm install under a git-managed
+  prefix such as Homebrew's `/opt/homebrew` claimed Homebrew's commit as
+  qmd's. Identical tarballs reported different "commits" depending only on
+  where they were installed, which is why one issue can collect three distinct
+  hashes for the same published build. `scripts/build.mjs` now stamps the
+  commit it built from into `dist/cli/build-info.json` (suffixed `-dirty` when
+  built from a modified tree), and the runtime prefers that. Source checkouts
+  still resolve their own HEAD, but only after confirming the enclosing
+  repository is qmd's; anything else reports no commit rather than a
+  misleading one. The lookup also no longer interpolates the install path into
+  a shell string, so a path containing a space stops silently dropping the
+  commit, and `--version` from a build runs no subprocess at all.
+
+- `qmd doctor` no longer false-positives `.etag` HTTP sidecars (written by
+  `qmd pull` next to each download) as invalid GGUF models. The model-cache
+  check now only inspects real `.gguf` files, so a sidecar that happens to
+  sort before the blob no longer poisons the report. #812
+
+- `qmd mcp stop` and `qmd mcp --http --daemon` now verify that a pidfile PID still belongs to a qmd process before signalling it or refusing to start. Recycled PIDs (common after reboot) are treated as stale: the pidfile is unlinked instead of SIGTERM'ing an unrelated process or blocking daemon start with a false "Already running" error (#806).
+
+- `qmd collection add` now rejects missing paths and regular files before
+  creating collection configuration or index state. The error reports both the
+  received and resolved path so malformed shell arguments can be corrected.
+
+- Claude Code plugin: scope the plugin `source` to `./skills` so installs
+  copy just the skills (~50 KB) instead of the entire repository. Previously a
+  canonical install materialized ~230 MB / 9,000+ items into
+  `~/.claude/plugins/cache/` — including a full npm dependency install
+  triggered by the repo-root `package.json`. Both skills (`qmd` and `release`)
+  still ship, unchanged. (#790)
+
+- Claude Code plugin: releases now bump the plugin version in
+  `.claude-plugin/marketplace.json` in lockstep with `package.json`. The
+  plugin cache is keyed on this version, and it had been stuck at `0.1.0`
+  since February — so installed plugins never received skill updates
+  (users who installed in February are still being served that snapshot
+  today, despite the qmd skill nearly tripling in size since). Also bumps
+  the plugin to `2.6.3` as a one-time catch-up so existing installs pick
+  up the current skill on their next `claude plugin update`. (#789)
+
+### Changed
+
+- `--full-path` no longer degrades silently when a result cannot be resolved on
+  disk (#785). A fallback there means the file moved or was deleted since the
+  last index, so `search`, `query`, `get` and `multi-get` now print a notice to
+  stderr naming how many results fell back and suggesting `qmd update`; stdout
+  stays machine-readable.
+- `search`/`query` now decide per result whether to show the docid under
+  `--full-path`, matching `multi-get` and `get`: a result that resolved shows
+  its on-disk path and no docid, one that did not keeps its `qmd://` URI *and*
+  its docid, so it is still addressable. Previously the docid was dropped for
+  every row whenever the flag was set, leaving unresolved rows with neither a
+  usable path nor an identifier.
+- `search --format csv` always emits the `docid` column, empty for rows that
+  resolved to an on-disk path. Under `--full-path` the header previously
+  dropped the column entirely — which also disagreed with the empty-result
+  header, always printed with `docid`. Column positions are now stable across
+  runs and formats.
+
+## [2.6.3] - 2026-06-24
+
+### Added
+
+- `qmd embed --timeout <minutes>` overrides the embed session's max duration
+  (previously hardcoded to 30 minutes). Use a larger value to let a big index
+  finish in one run, or `--timeout 0` to remove the cap entirely. When the cap is
+  reached, remaining document batches are skipped as before, so re-running
+  `qmd embed` continues where it left off.
+
+### Documentation
+
+- README: added a "Configuring `index.yml`" section documenting the full config
+  schema — `global_context`, `editor_uri`, the `models.embed`/`rerank`/`generate`
+  overrides, and per-collection `path`/`pattern`/`ignore`/`update`/
+  `includeByDefault`/`context` — with file-location rules (`XDG_CONFIG_HOME`,
+  `QMD_CONFIG_DIR`, named `{name}.yml`, project-local `.qmd/index.yml`). Every key
+  is verified against `src/collections.ts` and its consumers. Documents behavior
+  that previously existed only in code, where the absence of docs led contributors
+  to repeatedly re-submit already-shipped model-resolution fixes (#502, #559, #564)
+  and to request config that already works (#645, #678). Added
+  `XDG_CONFIG_HOME`/`QMD_CONFIG_DIR` to the environment-variable table and noted
+  the `index.yml` `models:` / `QMD_EMBED_MODEL` override path in the Model
+  Configuration section.
+- README: expanded the per-collection `update` field into an "Automatic update
+  commands" subsection — the feature the maintainer publicly called under-documented
+  — covering execution via `bash -c` in the collection's directory, the run-then-
+  reindex order, the non-zero-exit abort behavior, and the `qmd collection
+  update-cmd` set/clear shortcut. The `ignore` key now states it is YAML-only (no
+  CLI command) and additive with the un-overridable built-in exclusions.
+- `example-index.yml`: overhauled from three near-identical collections into a
+  fully-commented starter template where each collection demonstrates a distinct
+  feature (hierarchical context, auto-`update`, `ignore` patterns, non-markdown
+  globs, `includeByDefault: false`, and an all-fields example), plus commented
+  `editor_uri`/`models` stubs. README now links to it. Model URIs are intentionally
+  left as placeholders so the template can't drift from the defaults.
+- README: documented collection filtering (`-c` semantics), the `collection
+  show`/`include`/`exclude`/`update-cmd` subcommands, the `--intent`/`--no-rerank`/
+  `-C`/`--full-path` search flags, the `--format <kind>` output selector (with the
+  legacy `--json`/`--csv`/`--md`/`--xml`/`--files` booleans noted as aliases),
+  `vector-search`/`deep-search` aliases, embed
+  memory flags (`--max-docs-per-batch`/`--max-batch-mb`), a sample `--explain`
+  score trace, the `qmd doctor`/`qmd init` commands, the `get` `:from:count`
+  suffix and `--no-line-numbers`, an MCP tool parameter reference, and a
+  Benchmarking section for `qmd bench`.
+- docs/SYNTAX.md: removed the non-existent `q` MCP parameter example (the `query`
+  tool and REST endpoint accept only the `searches` array) and added a Scoping
+  section.
+- README: removed the misleading `qmd update --pull` example. The `--pull` flag is
+  parsed but never consumed (`updateCollections()` ignores it); the real mechanism
+  for running `git pull` before re-indexing is a per-collection `update` command,
+  set via `qmd collection update-cmd`.
+
+### Fixed
+
+- MCP server instructions now tell agents to scope with the plural `collections`
+  parameter (matching the schema). The previous singular `collection` hint led
+  agents to pass a parameter that Zod silently strips, producing unscoped results.
+  The `get` instruction line also now documents the full `file.md:from:count`
+  range suffix instead of only the single-line `file.md:100` offset.
+
+- Filesystem paths with special characters (`#`, `&`, spaces, `[]`, `()`, etc.)
+  now round-trip correctly through index → search → get. Previously
+  `reindexCollection` called `handelize()` on relative paths before storing
+  them, turning `# Meeting - 234232 3432 __ 5.md` into
+  `Meeting-234232-3432-5.md` and making `qmd get <actual-path>`,
+  `qmd get --full-path`, and `qmd ls` return dead or garbled paths. Paths are
+  now stored verbatim. Existing indexes auto-migrate on the next `qmd update`.
+
+- FTS5 search now correctly matches dotted version strings like `2026.4.10`. The
+  `porter unicode61` tokenizer splits on dots (storing `2026`, `4`, `10` as
+  separate tokens), but the query sanitizer was stripping dots and producing
+  `2026410` which never matched. Dotted terms are now split and ANDed together
+  so version-string searches work as expected (#563).
+- HTTP REST endpoints `/query` and `/search` now return `qmd://collection/path`
+  URIs in the `file` field, matching the output format used by the CLI and MCP
+  resource URIs. Previously the raw `displayPath` (`collection/path`) was
+  returned without the scheme prefix (#576).
+- The embed session `maxDuration` is now env-configurable via
+  `QMD_EMBED_MAX_DURATION_MS` (default: 30 min). This prevents large-corpus
+  embeddings from being aborted by the hardcoded 30-minute ceiling (#673).
+- `qmd query`, `qmd update`, and other commands no longer fail with
+  `SQLiteError: database is locked` when multiple processes run against the
+  same index in parallel (e.g. an `update` racing a long `embed`, the
+  first-open schema migration racing a routine command, or an agent fanning
+  out searches). `openDatabase` now sets `PRAGMA busy_timeout = 120000` on
+  every connection, so a writer that loses the race queues at batch
+  boundaries instead of throwing immediately. WAL handles read/write
+  concurrency but does not serialise concurrent writers, and `bun:sqlite`
+  and `better-sqlite3` both default the timeout to 0, so the loser
+  previously failed on the first DDL statement in `initializeDatabase`.
+  Override the default with `QMD_SQLITE_BUSY_TIMEOUT` (milliseconds; `0`
+  restores fail-fast). Two more crashes on the same concurrent-open
+  path are fixed: `trigger documents_ai already exists` (the FTS sync
+  triggers were dropped and recreated as separate statements on every
+  open, so two processes interleaved between the `DROP` and the
+  `CREATE`; `busy_timeout` serialises individual statements but not the
+  pair) and `database is locked` while migrating a cold database to WAL
+  (the `journal_mode` switch needs a brief exclusive lock and does not
+  invoke the busy handler). FTS trigger setup is now gated behind
+  `PRAGMA user_version` inside one `IMMEDIATE` transaction, and the WAL
+  migration retries within the busy-timeout budget.
+
+## [2.5.3] - 2026-05-28
+
+### Features
+
+- `qmd get` now accepts a `:from:count` suffix on a path or docid (e.g.
+  `qmd get "#abc123:120:40"` reads 40 lines starting at line 120). Explicit
+  `--from`/`-l` flags still override the suffix. The MCP `get` tool accepts the
+  same suffix.
+- `qmd get` and `qmd multi-get` are now **line-numbered by default** and print
+  the document's `#docid` and `qmd://` path in the output header. Disable line
+  numbers with `--no-line-numbers`. The MCP `get`/`multi_get` tools default
+  `lineNumbers` to `true` to match.
+- `qmd multi-get` now includes the `#docid` in every output format
+  (`--md`, `--json`, `--csv`, `--xml`, `--files`, and the default CLI view),
+  consistent with `qmd search`.
+- `qmd get` and `qmd multi-get` accept `--full-path`, which replaces the
+  `qmd://` path + `#docid` with the document's on-disk filesystem path (handy for
+  piping into `Read`/`Edit`/an editor). Falls back to the canonical `qmd://` +
+  docid header when the file no longer exists on disk.
+- `qmd search` / `qmd query` now show a clearer hit identifier: the default CLI
+  view (and the new `**file:**` line in `--md` output) always prints the full
+  `qmd://collection/path` URI so you can pipe it straight back into `qmd get`.
+- `qmd search` / `qmd query` accept `--full-path` with the same semantics as
+  `qmd get`: the result label becomes the file's on-disk path — `./`-prefixed
+  relative path when the file lives in a subfolder of `$PWD`, absolute realpath
+  otherwise — and the per-result `#docid` is dropped because the path is the
+  identifier. The leading `./` is intentional so the output is unambiguously a
+  filesystem path. Applies to all output formats.
+- `qmd get` and `qmd multi-get` now also use the `./`-prefixed convention when
+  `--full-path` renders a path under `$PWD`, matching `search`/`query`.
+- New `--format <kind>` flag selects the output format (`cli` | `json` | `csv` |
+  `md` | `xml` | `files`) for `search`, `query`, and `multi-get`. The legacy
+  boolean aliases (`--json`/`--csv`/`--md`/`--xml`/`--files`) still work but are
+  no longer in `--help`; prefer `--format`.
+
+### Fixes
+
+- Launcher: source-mode runner selection now prefers Node + tsx over Bun when
+  both `package-lock.json` and `bun.lock` are present in the package root,
+  mirroring the dist-mode "npm priority" rule. Fixes pnpm-global installs that
+  copy the entire working tree (including `.git` and `bun.lock`) into the
+  install dir and previously routed through Bun, causing ABI mismatches with
+  the Node-built `better-sqlite3` / `sqlite-vec` native modules.
+- Darwin Metal: llama-using commands (`query`, `vsearch`, `embed`) no longer
+  dump a multi-kB GGML/Metal backtrace at process exit even when output
+  succeeded. The libggml-metal static `ggml_metal_device` destructor asserts
+  `[rsets->data count] == 0` during `__cxa_finalize_ranges`, but the
+  buffer-free path never calls the symmetric `ggml_metal_device_rsets_rm`
+  to remove released rsets from the device collection (upstream
+  ggml-org/llama.cpp#22593, one-line fix open as PR #22595). The assertion
+  only fires when `process.exit()` skips Node's `beforeExit` hook, which is
+  what node-llama-cpp uses to auto-dispose Metal contexts. Primary fix:
+  `finishSuccessfulCliCommand` now sets `process.exitCode = 0` and returns
+  instead of calling `process.exit(0)`, so `beforeExit` fires and the native
+  binding cleans up before libc's static destructor runs. Defense-in-depth:
+  the launcher (`bin/qmd`) and the npm test driver (`scripts/test-all.mjs`
+  + the `test:bun` / `test:unit` package.json scripts) also set
+  `GGML_METAL_NO_RESIDENCY=1` on darwin before spawning node/bun, covering
+  error paths and tests that still terminate via `process.exit()`. The env
+  var must be set before node/bun start — libggml-metal reads it via libc
+  `getenv` at module-load time, and Bun does not propagate `process.env`
+  mutations to libc `setenv` — so it lives in the launcher rather than in
+  test-preload. Residency sets give no measurable speedup for QMD's
+  short-lived CLI workflow (benchmarked on M3 Pro). Opt back in with
+  `QMD_METAL_KEEP_RESIDENCY=1` for long-lived qmd processes (e.g. the MCP
+  daemon may benefit on hot reload) or to triage the upstream fix.
+  `qmd doctor` reports the mitigation state. Minimal reproduction:
+  `scripts/repro-metal-rsets-crash.mjs`.
+
+### Docs
+
+- qmd skill: emphasize reading line ranges with `get`'s built-in
+  `:from:count` suffix / `--from`/`-l` flags instead of piping through
+  `sed`/`head`/`tail`; cite the docid and line numbers now present in retrieval
+  output; and author structured `intent:`/`lex:`/`vec:`/`hyde:` queries yourself
+  rather than relying on built-in query expansion.
+
+## [2.5.2] - 2026-05-22
+
+### Fixes
+
+- Launcher: Rewrite `bin/qmd` as a Node-based shebang polyglot to fix global npm installation execution failures on Windows (#668 / #452), while supporting seamless fallback to Bun in Node-less environments.
+
+## [2.5.1] - 2026-05-20
+
+### Changes
+
+- Release: publish from GitHub Actions via npm Trusted Publishing/OIDC instead of a long-lived `NPM_TOKEN` secret.
+
+## [2.5.0] - 2026-05-19
+
+### Changes
+
+- Dependencies: update core SQLite/config/chunking packages (`better-sqlite3`, `yaml`, `web-tree-sitter`, `tree-sitter-go`, and `tree-sitter-python`) while keeping incompatible `zod`, `tsx`, and `vitest` majors pinned.
+- Agent skills: add `qmd skills list|get|path` to serve version-matched runtime skill instructions from the installed CLI, and make `qmd skill install` write a stable discovery stub so installed agent skills do not go stale after QMD upgrades.
+- CLI: add `qmd doctor` for index/runtime diagnostics, including SQLite/sqlite-vec versions, embedding fingerprint freshness, mixed-fingerprint detection, safe legacy fingerprint adoption, and content-hash sampling.
+
+### Fixes
+
+- Launcher: prefer runnable TypeScript source in git checkouts even when ignored `dist/` artifacts exist, while packaged installs continue to run `dist/`.
+- GPU: keep node-llama-cpp's documented `gpu: "auto"` initialization as the primary path, then perform no-build packaged CUDA/Vulkan/Metal probes only if auto falls back to CPU.
+- CLI: move GPU/CPU runtime diagnostics out of `qmd status`; use `qmd doctor` for device probing and related environment guidance.
+- CLI: point unexpected command/setup failures toward `qmd doctor` so diagnostics are the default next step when QMD behaves incorrectly.
+- Doctor: explicitly warn when `content_vectors` contains multiple non-empty embedding fingerprint names, with the per-fingerprint document/chunk breakdown.
+- Embed: make the TTY progress line label byte-based input progress explicitly, show embedded chunks as a count, and shorten the displayed model name.
+- Embed: retain per-chunk failure details, retry failed chunks after later successful embeds and again when no other chunks remain, clear recovered errors, and cap retries to avoid endless loops.
+- Tests: expand the container smoke harness to cover npm-global, npx-style, and Bun-global install scenarios, always checking auto and `QMD_FORCE_CPU=1` doctor modes, with opt-in tiny `qmd embed` and GPU probe runs for supported container runtimes.
+- Embedding: fingerprint vector metadata using the active embedding model and formatting/chunking parameters so stale vectors are treated as pending after search semantics change. Legacy `content_vectors` columns are migrated lazily on first vector-health/write use to preserve fast QMD startup.
+
+- Skill: expand the packaged QMD skill with retrieval-first workflows, structured query examples, wiki/source collection guidance, and safe fallbacks when model-backed search is unavailable.
+- Tests: make `bun run test` execute the local unit suite under both Node/Vitest and Bun (`test:node` + `test:bun`) so runtime-specific regressions are caught before CI.
+- Model config: centralize embedding/rerank/generation model resolution so `qmd embed`, `status`, `query`, `vsearch`, `pull`, SDK vector search, and `bench` use the same active `.qmd/index.yaml` model hints and environment fallbacks.
+- GPU/status: `qmd status` now uses the same embedding model identity as `qmd embed` when computing pending embeddings, so URI-backed embeddings are not incorrectly reported as pending under the legacy `embeddinggemma` alias.
+- GPU status: `qmd status` now always shows GPU mode/configuration without unsafe native probing, and CPU-fallback warnings point to `QMD_STATUS_DEVICE_PROBE=1 qmd status` for an actual backend probe. The no-GPU warning is emitted once per process instead of once per LLM instance during benchmarks.
+- GPU: add `QMD_FORCE_CPU=1` / `--no-gpu` to bypass CUDA/Vulkan/Metal probing entirely, and route native llama.cpp stdout noise to stderr so JSON output stays parseable during search/query commands.
+- Snippet line numbers: `qmd_query` (MCP), HTTP `/query`, and `qmd query`
+  (CLI JSON output and snippet headers) now return absolute source-file
+  line numbers instead of chunk-local ones, so the `line` field can be
+  passed back to `qmd_get` as `fromLine` without a separate lookup.
+  Snippet selection remains scoped to the best matching chunk
+  (preserves #149).
+- CLI: `qmd query --full` now emits the full document body in all output
+  formats (json, csv, md, xml), restoring the documented behavior of the
+  flag. Previously it returned only the best matching chunk (~3.6KB max
+  per result). Output payload for `--full` queries is now proportional
+  to total document size.
+- macOS Metal: `qmd query --json` now flushes successful JSON output and uses a safe immediate-exit path on Darwin to avoid ggml Metal finalizer aborts; other commands still dispose LLM contexts/models before the llama runtime. #368
+- Embedding: require complete chunk coverage before treating a document as
+  embedded, remove partial vectors when chunk/session failures leave a
+  document incomplete, and keep `qmd status` pending counts honest after
+  interrupted long embed runs. #637 #378
+- Embedding: `qmd embed -c <collection>` now scopes pending-doc selection
+  to the requested collection instead of embedding global pending work.
+  Scoped `--force` clears only collection-owned vectors, preserves shared
+  hashes referenced by sibling collections, and drops `vectors_vec` only
+  when the scoped clear empties all vectors.
+- Hybrid search: weight RRF lists by query type so original FTS and original vector evidence get the intended 2x boost, instead of accidentally boosting the first lexical expansion. #591
+- MCP: seed llama.cpp/GGML quiet env vars before launching `qmd mcp` so native logs cannot pollute stdio JSON-RPC framing. #593
+- CLI: remove CommonJS `require()` calls from ESM index path normalization so `qmd --index <path>` no longer crashes with `ERR_AMBIGUOUS_MODULE_SYNTAX` on Node 22+. #634
+- Windows CUDA: serialize llama.cpp embedding/reranking contexts by default to avoid intermittent `ggml-cuda.cu:98` crashes in `qmd query`; set `QMD_EMBED_PARALLELISM` to opt back into parallel contexts if your driver is stable. #519
+- MCP: make `qmd mcp --index <name>` use the selected index for both foreground and daemon HTTP servers instead of falling back to the default store. #343
+- Embedding: respect `QMD_EMBED_MODEL` consistently for vector indexing and vector-backed search, with default-model fallback when unset.
+- Config: use one home-directory resolver for YAML config and the default SQLite cache path, avoiding Windows CLI/MCP split-brain when `HOME` is unset.
+- GPU: respect explicit `QMD_LLAMA_GPU=metal|vulkan|cuda` backend overrides instead of always using auto GPU selection. #529
+- Fix: preserve original filename case in `handelize()`. The previous
+  `.toLowerCase()` call made indexed paths unreachable on case-sensitive
+  filesystems (Linux). `qmd update` automatically migrates legacy
+  lowercase paths without re-embedding.
+- CLI: make `qmd status` skip native `node-llama-cpp` device probing by
+  default so status stays safe on machines with broken or unsupported GPU
+  drivers. Set `QMD_STATUS_DEVICE_PROBE=1` to opt in.
+- CLI: lazy-load `node-llama-cpp` so lightweight commands such as
+  `qmd status` do not import native ML dependencies or trigger llama.cpp
+  builds on ARM/no-GPU machines. #491
+- Store: keep content rows referenced by inactive documents during orphan
+  cleanup so `qmd update` preserves soft-deleted tombstones for removed
+  files. #585
+- Packaging: install AST grammar WASM packages as required dependencies so
+  Bun global installs include TypeScript/TSX/JavaScript grammars, and add a
+  `smoke:package-grammars` verification command. #595
+- Launcher: add wrapper smoke coverage for scoped package, npm/npx,
+  Homebrew/Linuxbrew, Bun global symlink layouts, and `$BUN_INSTALL`
+  false-positive runtime selection regressions. #351 #353 #354 #356 #358 #359
+
+## [2.1.0] - 2026-04-05
+
+Code files now chunk at function and class boundaries via tree-sitter,
+clickable editor links land you at the right line from search results,
+and per-collection model configuration means you can point different
+collections at different embedding models. 25+ community PRs fix
+embedding stability, BM25 accuracy, and cross-platform launcher issues.
+
+### Changes
+
+- AST-aware chunking for code files via `web-tree-sitter`. Supported
+  languages: TypeScript/JavaScript, Python, Go, and Rust. Code files
+  are chunked at function, class, and import boundaries instead of
+  arbitrary text positions. Markdown and unknown file types are unchanged.
+  `--chunk-strategy <auto|regex>` flag on `qmd embed` and `qmd query`
+  (default `regex`). SDK: `chunkStrategy` option on `embed()` and
+  `search()`. `qmd status` shows grammar availability.
+- `qmd bench <fixture.json>` command for search quality benchmarks.
+  Measures precision@k, recall, MRR, and F1 across BM25, vector, hybrid,
+  and full pipeline backends. Ships with an example fixture against
+  the eval-docs test collection. #470 (thanks @jmilinovich)
+- `models:` section in `index.yml` lets you configure `embed`, `rerank`,
+  and `generate` model URIs per collection. Resolution order is
+  config > env var (`QMD_EMBED_MODEL`, `QMD_RERANK_MODEL`,
+  `QMD_GENERATE_MODEL`) > built-in default. #502
+  (thanks @JohnRichardEnders)
+- CLI search output now emits clickable OSC 8 terminal hyperlinks when
+  stdout is a TTY. Links resolve `qmd://` paths to absolute filesystem
+  paths and open in editors via URI templates (default:
+  `vscode://file/{path}:{line}:{col}`). Configure with `QMD_EDITOR_URI`
+  or `editor_uri` in the YAML config. #508 (thanks @danmackinlay)
+- `--no-rerank` flag skips the reranking step in `qmd query` — useful
+  when you want fast results or don't have a GPU. Also exposed as
+  `rerank: false` on the MCP `query` tool. #370 (thanks @mvanhorn),
+  #478 (thanks @zestyboy)
+- ONNX conversion script for deploying embedding models via
+  Transformers.js. #399 (thanks @shreyaskarnik)
+- GitHub Actions workflow to build the Nix flake on Linux and macOS.
+
+### Fixes
+
+- Embedding: prevent `qmd embed` from running indefinitely when the
+  embedding loop stalls. #458 (thanks @ccc-fff)
+- Embedding: truncate oversized text before embedding to prevent GGML
+  crash, and bound memory usage during batch embedding. #393
+  (thanks @lskun), #395 (thanks @ProgramCaiCai)
+- Embedding: set explicit embed context size (default 2048, configurable
+  via `QMD_EMBED_CONTEXT_SIZE`) instead of using the model's full
+  window. #500
+- Embedding: error on dimension mismatch instead of silently rebuilding
+  the vec0 table. #501
+- Embedding: handle vec0 `OR REPLACE` limitation in `insertEmbedding`.
+  #456 (thanks @antonio-mello-ai)
+- Embedding: fix model selection when multiple models are configured.
+  #494
+- BM25: correct field weights to include all 3 FTS columns — title,
+  body, and path were not weighted correctly. #462 (thanks @goldsr09)
+- BM25: handle hyphenated tokens in FTS5 lex queries so terms like
+  "real-time" match correctly. #463 (thanks @goldsr09)
+- BM25: preserve underscores in search terms instead of stripping them.
+  #404
+- BM25: use CTE in `searchFTS` to prevent query planner regression with
+  collection filter.
+- Reranker: increase default context size 2048→4096 and make
+  configurable via `QMD_RERANK_CONTEXT_SIZE`. Fix template overhead
+  underestimate 200→512. #453 (thanks @builderjarvis)
+- GPU: catch initialization failures and fall back to CPU instead of
+  crashing.
+- MCP: read version from `package.json` instead of hardcoding. #431
+- MCP: include collection name in status output. #416
+- Multi-get: support brace expansion patterns in glob matching. #424
+- Launcher: prioritize `package-lock.json` to prevent Bun false
+  positive. #385 (thanks @rymalia)
+- Launcher: remove `$BUN_INSTALL` check that caused false Bun detection.
+  #362 (thanks @syedair)
+- Launcher: skip Git Bash path detection on WSL. #371
+  (thanks @oysteinkrog)
+- Model cache: respect `XDG_CACHE_HOME` for model cache directory. #457
+  (thanks @antonio-mello-ai)
+- SQLite: add macOS Homebrew SQLite support for Bun and restore
+  actionable errors. #377 (thanks @serhii12)
+- Pin zod to exact 4.2.1 to fix `tsc` build failure. #382
+  (thanks @rymalia)
+- Preserve dots and original case in `handelize()` — filenames like
+  `MEMORY.md` no longer become `memory-md`. #475 (thanks @alexei-led)
+- Include `line` in `--json` search output so editor integrations can
+  jump directly to `file:line`. #506 (thanks @danmackinlay)
+- Nix: fix paths in flake and make Bun dependency a fixed-output
+  derivation so sandboxed Linux builds work offline. #479
+  (thanks @surma-dump)
+- Sync stale `bun.lock` (`better-sqlite3` 11.x → 12.x). CI and release
+  script now use `--frozen-lockfile` to prevent recurrence. #386
+  (thanks @Mic92)
+- Approve native build scripts in pnpm so `better-sqlite3` and
+  tree-sitter modules compile correctly. Update vitest ^3.0.0 → ^3.2.4.
+
+## [2.0.1] - 2026-03-10
+
+### Changes
+
+- `qmd skill install` copies the packaged QMD skill into
+  `~/.claude/commands/` for one-command setup. #355 (thanks @nibzard)
+
+### Fixes
+
+- Fix Qwen3-Embedding GGUF filename case — HuggingFace filenames are
+  case-sensitive, the lowercase variant returned 404. #349 (thanks @byheaven)
+- Resolve symlinked global launcher path so `qmd` works correctly when
+  installed via `npm i -g`. #352 (thanks @nibzard)
+
+## [2.0.0] - 2026-03-10
+
+QMD 2.0 declares a stable library API. The SDK is now the primary interface —
+the MCP server is a clean consumer of it, and the source is organized into
+`src/cli/` and `src/mcp/`. Also: Node 25 support and a runtime-aware bin wrapper
+for bun installs.
+
+### Changes
+
+- Stable SDK API with `QMDStore` interface — search, retrieval, collection/context
+  management, indexing, lifecycle
+- Unified `search()`: pass `query` for auto-expansion or `queries` for
+  pre-expanded lex/vec/hyde — replaces the old query/search/structuredSearch split
+- New `getDocumentBody()`, `getDefaultCollectionNames()`, `Maintenance` class
+- MCP server rewritten as a clean SDK consumer — zero internal store access
+- CLI and MCP organized into `src/cli/` and `src/mcp/` subdirectories
+- Runtime-aware `bin/qmd` wrapper detects bun vs node to avoid ABI mismatches.
+  Closes #319
+- `better-sqlite3` bumped to ^12.4.5 for Node 25 support. Closes #257
+- Utility exports: `extractSnippet`, `addLineNumbers`, `DEFAULT_MULTI_GET_MAX_BYTES`
+
+### Fixes
+
+- Remove unused `import { resolve }` in store.ts that shadowed local export
+
+## [1.1.6] - 2026-03-09
+
+QMD can now be used as a library. `import { createStore } from '@tobilu/qmd'`
+gives you the full search and indexing API — hybrid query, BM25, structured
+search, collection/context management — without shelling out to the CLI.
+
+### Changes
+
+- **SDK / library mode**: `createStore({ dbPath, config })` returns a
+  `QMDStore` with `query()`, `search()`, `structuredSearch()`, `get()`,
+  `multiGet()`, and collection/context management methods. Supports inline
+  config (no files needed) or a YAML config path.
+- **Package exports**: `package.json` now declares `main`, `types`, and
+  `exports` so bundlers and TypeScript resolve `@tobilu/qmd` correctly.
+
+## [1.1.5] - 2026-03-07
+
+Ambiguous queries like "performance" now produce dramatically better results
+when the caller knows what they mean. The new `intent` parameter steers all
+five pipeline stages — expansion, strong-signal bypass, chunk selection,
+reranking, and snippet extraction — without searching on its own. Design and
+original implementation by Ilya Grigorik (@vyalamar) in #180.
+
+### Changes
+
+- **Intent parameter**: optional `intent` string disambiguates queries across
+  the entire search pipeline. Available via CLI (`--intent` flag or `intent:`
+  line in query documents), MCP (`intent` field on the query tool), and
+  programmatic API. Adapted from PR #180 (thanks @vyalamar).
+- **Query expansion**: when intent is provided, the expansion LLM prompt
+  includes `Query intent: {intent}`, matching the finetune training data
+  format for better-aligned expansions.
+- **Reranking**: intent is prepended to the rerank query so Qwen3-Reranker
+  scores with domain context.
+- **Chunk selection**: intent terms scored at 0.5× weight alongside query
+  terms (1.0×) when selecting the best chunk per document for reranking.
+- **Snippet extraction**: intent terms scored at 0.3× weight to nudge
+  snippets toward intent-relevant lines without overriding query anchoring.
+- **Strong-signal bypass disabled with intent**: when intent is provided, the
+  BM25 strong-signal shortcut is skipped — the obvious keyword match may not
+  be what the caller wants.
+- **MCP instructions**: callers are now guided to provide `intent` on every
+  search call for disambiguation.
+- **Query document syntax**: `intent:` recognized as a line type. At most one
+  per document, cannot appear alone. Grammar updated in `docs/SYNTAX.md`.
+
+## [1.1.2] - 2026-03-07
+
+13 community PRs merged. GPU initialization replaced with node-llama-cpp's
+built-in `autoAttempt` — deleting ~220 lines of manual fallback code and
+fixing GPU issues reported across 10+ PRs in one shot. Reranking is faster
+through chunk deduplication and a parallelism cap that prevents VRAM
+exhaustion.
+
+### Changes
+
+- **GPU init**: use node-llama-cpp's `build: "autoAttempt"` instead of manual
+  GPU backend detection. Automatically tries Metal/CUDA/Vulkan and falls back
+  gracefully. #310 (thanks @giladgd — the node-llama-cpp author)
+- **Query `--explain`**: `qmd query --explain` exposes retrieval score traces
+  — backend scores, per-list RRF contributions, top-rank bonus, reranker
+  score, and final blended score. Works in JSON and CLI output. #242
+  (thanks @vyalamar)
+- **Collection ignore patterns**: `ignore: ["Sessions/**", "*.tmp"]` in
+  collection config to exclude files from indexing. #304 (thanks @sebkouba)
+- **Multilingual embeddings**: `QMD_EMBED_MODEL` env var lets you swap in
+  models like Qwen3-Embedding for non-English collections. #273 (thanks
+  @daocoding)
+- **Configurable expansion context**: `QMD_EXPAND_CONTEXT_SIZE` env var
+  (default 2048) — previously used the model's full 40960-token window,
+  wasting VRAM. #313 (thanks @0xble)
+- **`candidateLimit` exposed**: `-C` / `--candidate-limit` flag and MCP
+  parameter to tune how many candidates reach the reranker. #255 (thanks
+  @pandysp)
+- **MCP multi-session**: HTTP transport now supports multiple concurrent
+  client sessions, each with its own server instance. #286 (thanks @joelev)
+
+### Fixes
+
+- **Reranking performance**: cap parallel rerank contexts at 4 to prevent
+  VRAM exhaustion on high-core machines. Deduplicate identical chunk texts
+  before reranking — same content from different files now shares a single
+  reranker call. Cache scores by content hash instead of file path.
+- Deactivate stale docs when all files are removed from a collection and
+  `qmd update` is run. #312 (thanks @0xble)
+- Handle emoji-only filenames (`🐘.md` → `1f418.md`) instead of crashing.
+  #308 (thanks @debugerman)
+- Skip unreadable files during indexing (e.g. iCloud-evicted files returning
+  EAGAIN) instead of crashing. #253 (thanks @jimmynail)
+- Suppress progress bar escape sequences when stderr is not a TTY. #230
+  (thanks @dgilperez)
+- Emit format-appropriate empty output (`[]` for JSON, CSV header for CSV,
+  etc.) instead of plain text "No results." #228 (thanks @amsminn)
+- Correct Windows sqlite-vec package name (`sqlite-vec-windows-x64`) and add
+  `sqlite-vec-linux-arm64`. #225 (thanks @ilepn)
+- Fix claude plugin setup CLI commands in README. #311 (thanks @gi11es)
+
+## [1.1.1] - 2026-03-06
+
+### Fixes
+
+- Reranker: truncate documents exceeding the 2048-token context window
+  instead of silently producing garbage scores. Long chunks (e.g. from
+  PDF ingestion) now get a fair ranking.
+- Nix: add python3 and cctools to build dependencies. #214 (thanks
+  @pcasaretto)
+
+## [1.1.0] - 2026-02-20
+
+QMD now speaks in **query documents** — structured multi-line queries where every line is typed (`lex:`, `vec:`, `hyde:`), combining keyword precision with semantic recall. A single plain query still works exactly as before (it's treated as an implicit `expand:` and auto-expanded by the LLM). Lex now supports quoted phrases and negation (`"C++ performance" -sports -athlete`), making intent-aware disambiguation practical. The formal query grammar is documented in `docs/SYNTAX.md`.
+
+The npm package now uses the standard `#!/usr/bin/env node` bin convention, replacing the custom bash wrapper. This fixes native module ABI mismatches when installed via bun and works on any platform with node >= 22 on PATH.
+
+### Changes
+
+- **Query document format**: multi-line queries with typed sub-queries (`lex:`, `vec:`, `hyde:`). Plain queries remain the default (`expand:` implicit, but not written inside the document). First sub-query gets 2× fusion weight — put your strongest signal first. Formal grammar in `docs/SYNTAX.md`.
+- **Lex syntax**: full BM25 operator support. `"exact phrase"` for verbatim matching; `-term` and `-"phrase"` for exclusions. Essential for disambiguation when a term is overloaded across domains (e.g. `performance -sports -athlete`).
+- **`expand:` shortcut**: send a single plain query (or start the document with `expand:` on its only line) to auto-expand via the local LLM. Query documents themselves are limited to `lex`, `vec`, and `hyde` lines.
+- **MCP `query` tool** (renamed from `structured_search`): rewrote the tool description to fully teach AI agents the query document format, lex syntax, and combination strategy. Includes worked examples with intent-aware lex.
+- **HTTP `/query` endpoint** (renamed from `/search`; `/search` kept as silent alias).
+- **`collections` array filter**: filter by multiple collections in a single query (`collections: ["notes", "brain"]`). Removed the single `collection` string param — array only.
+- **Collection `include`/`exclude`**: `includeByDefault: false` hides a collection from all queries unless explicitly named via `collections`. CLI: `qmd collection exclude <name>` / `qmd collection include <name>`.
+- **Collection `update-cmd`**: attach a shell command that runs before every `qmd update` (e.g. `git stash && git pull --rebase --ff-only && git stash pop`). CLI: `qmd collection update-cmd <name> '<cmd>'`.
+- **`qmd status` tips**: shows actionable tips when collections lack context descriptions or update commands.
+- **`qmd collection` subcommands**: `show`, `update-cmd`, `include`, `exclude`. Bare `qmd collection` now prints help.
+- **Packaging**: replaced custom bash wrapper with standard `#!/usr/bin/env node` shebang on `dist/qmd.js`. Fixes native module ABI mismatches when installed via bun, and works on any platform where node >= 22 is on PATH.
+- **Removed MCP tools** `search`, `vector_search`, `deep_search` — all superseded by `query`.
+- **Removed** `qmd context check` command.
+- **CLI timing**: each LLM step (expand, embed, rerank) prints elapsed time inline (`Expanding query... (4.2s)`).
+
+### Fixes
+
+- `qmd collection list` shows `[excluded]` tag for collections with `includeByDefault: false`.
+- Default searches now respect `includeByDefault` — excluded collections are skipped unless explicitly named.
+- Fix main module detection when installed globally via npm/bun (symlink resolution).
+
+## [1.0.7] - 2026-02-18
+
+### Changes
+
+- LLM: add LiquidAI LFM2-1.2B as an alternative base model for query
+  expansion fine-tuning. LFM2's hybrid architecture (convolutions + attention)
+  is 2x faster at decode/prefill vs standard transformers — good fit for
+  on-device inference.
+- CLI: support multiple `-c` flags to search across several collections at
+  once (e.g. `qmd search -c notes -c journals "query"`). #191 (thanks
+  @openclaw)
+
+### Fixes
+
+- Return empty JSON array `[]` instead of no output when `--json` search
+  finds no results.
+- Resolve relative paths passed to `--index` so they don't produce malformed
+  config entries.
+- Respect `XDG_CONFIG_HOME` for collection config path instead of always
+  using `~/.config`. #190 (thanks @openclaw)
+- CLI: empty-collection hint now shows the correct `collection add` command.
+  #200 (thanks @vincentkoc)
+
+## [1.0.6] - 2026-02-16
+
+### Changes
+
+- CLI: `qmd status` now shows models with full HuggingFace links instead of
+  static names in `--help`. Model info is derived from the actual configured
+  URIs so it stays accurate if models change.
+- Release tooling: pre-push hook handles non-interactive shells (CI, editors)
+  gracefully — warnings auto-proceed instead of hanging on a tty prompt.
+  Annotated tags now resolve correctly for CI checks.
+
+## [1.0.5] - 2026-02-16
+
+The npm package now ships compiled JavaScript instead of raw TypeScript,
+removing the `tsx` runtime dependency. A new `/release` skill automates the
+full release workflow with changelog validation and git hook enforcement.
+
+### Changes
+
+- Build: compile TypeScript to `dist/` via `tsc` so the npm package no longer
+  requires `tsx` at runtime. The `qmd` shell wrapper now runs `dist/qmd.js`
+  directly.
+- Release tooling: new `/release` skill that manages the full release
+  lifecycle — validates changelog, installs git hooks, previews release notes,
+  and cuts the release. Auto-populates `[Unreleased]` from git history when
+  empty.
+- Release tooling: `scripts/extract-changelog.sh` extracts cumulative notes
+  for the full minor series (e.g. 1.0.0 through 1.0.5) for GitHub releases.
+  Includes `[Unreleased]` content in previews.
+- Release tooling: `scripts/release.sh` renames `[Unreleased]` to a versioned
+  heading and inserts a fresh empty `[Unreleased]` section automatically.
+- Release tooling: pre-push git hook blocks `v*` tag pushes unless
+  `package.json` version matches the tag, a changelog entry exists, and CI
+  passed on GitHub.
+- Publish workflow: GitHub Actions now builds TypeScript, creates a GitHub
+  release with cumulative notes extracted from the changelog, and publishes
+  to npm with provenance.
+
+## [1.0.0] - 2026-02-15
+
+QMD now runs on both Node.js and Bun, with up to 2.7x faster reranking
+through parallel GPU contexts. GPU auto-detection replaces the unreliable
+`gpu: "auto"` with explicit CUDA/Metal/Vulkan probing.
+
+### Changes
+
+- Runtime: support Node.js (>=22) alongside Bun via a cross-runtime SQLite
+  abstraction layer (`src/db.ts`). `bun:sqlite` on Bun, `better-sqlite3` on
+  Node. The `qmd` wrapper auto-detects a suitable Node.js install via PATH,
+  then falls back to mise, asdf, nvm, and Homebrew locations.
+- Performance: parallel embedding & reranking via multiple LlamaContext
+  instances — up to 2.7x faster on multi-core machines.
+- Performance: flash attention for ~20% less VRAM per reranking context,
+  enabling more parallel contexts on GPU.
+- Performance: right-sized reranker context (40960 → 2048 tokens, 17x less
+  memory) since chunks are capped at ~900 tokens.
+- Performance: adaptive parallelism — context count computed from available
+  VRAM (GPU) or CPU math cores rather than hardcoded.
+- GPU: probe for CUDA, Metal, Vulkan explicitly at startup instead of
+  relying on node-llama-cpp's `gpu: "auto"`. `qmd status` shows device info.
+- Tests: reorganized into flat `test/` directory with vitest for Node.js and
+  bun test for Bun. New `eval-bm25` and `store.helpers.unit` suites.
+
+### Fixes
+
+- Prevent VRAM waste from duplicate context creation during concurrent
+  `embedBatch` calls — initialization lock now covers the full path.
+- Collection-aware FTS filtering so scoped keyword search actually restricts
+  results to the requested collection.
+
+## [0.9.0] - 2026-02-15
+
+First published release on npm as `@tobilu/qmd`. MCP HTTP transport with
+daemon mode cuts warm query latency from ~16s to ~10s by keeping models
+loaded between requests.
+
+### Changes
+
+- MCP: HTTP transport with daemon lifecycle — `qmd mcp --http --daemon`
+  starts a background server, `qmd mcp stop` shuts it down. Models stay warm
+  in VRAM between queries. #149 (thanks @igrigorik)
+- Search: type-routed query expansion preserves lex/vec/hyde type info and
+  routes to the appropriate backend. Eliminates ~4 wasted backend calls per
+  query (10.0 → 6.0 calls, 1278ms → 549ms). #149 (thanks @igrigorik)
+- Search: unified pipeline — extracted `hybridQuery()` and
+  `vectorSearchQuery()` to `store.ts` so CLI and MCP share identical logic.
+  Fixes a class of bugs where results differed between the two. #149 (thanks
+  @igrigorik)
+- MCP: dynamic instructions generated at startup from actual index state —
+  LLMs see collection names, doc counts, and content descriptions. #149
+  (thanks @igrigorik)
+- MCP: tool renames (vsearch → vector_search, query → deep_search) with
+  rewritten descriptions for better tool selection. #149 (thanks @igrigorik)
+- Integration: Claude Code plugin with inline status checks and MCP
+  integration. #99 (thanks @galligan)
+
+### Fixes
+
+- BM25 score normalization — formula was inverted (`1/(1+|x|)` instead of
+  `|x|/(1+|x|)`), so strong matches scored *lowest*. Broke `--min-score`
+  filtering and made the "strong signal" short-circuit dead code. #76 (thanks
+  @dgilperez)
+- Normalize Unicode paths to NFC for macOS compatibility. #82 (thanks
+  @c-stoeckl)
+- Handle dense content (code) that tokenizes beyond expected chunk size.
+- Proper cleanup of Metal GPU resources on process exit.
+- SQLite-vec readiness verification after extension load.
+- Reactivate deactivated documents on re-index instead of creating duplicates.
+- Bun UTF-8 path corruption workaround for non-ASCII filenames.
+- Disable following symlinks in glob.scan to avoid infinite loops.
+
+## [0.8.0] - 2026-01-28
+
+Fine-tuned query expansion model trained with GRPO replaces the stock Qwen3
+0.6B. The training pipeline scores expansions on named entity preservation,
+format compliance, and diversity — producing noticeably better lexical
+variations and HyDE documents.
+
+### Changes
+
+- LLM: deploy GRPO-trained (Group Relative Policy Optimization) query
+  expansion model, hosted on HuggingFace and auto-downloaded on first use.
+  Better preservation of proper nouns and technical terms in expansions.
+- LLM: `/only:lex` mode for single-type expansions — useful when you know
+  which search backend will help.
+- LLM: HyDE output moved to first position so vector search can start
+  embedding while other expansions generate.
+- LLM: session lifecycle management via `withLLMSession()` pattern — ensures
+  cleanup even on failure, similar to database transactions.
+- Integration: org-mode title extraction support. #50 (thanks @sh54)
+- Integration: SQLite extension loading in Nix devshell. #48 (thanks @sh54)
+- Integration: AI agent discovery via skills.sh. #64 (thanks @Algiras)
+
+### Fixes
+
+- Use sequential embedding on CPU-only systems — parallel contexts caused a
+  race condition where contexts competed for CPU cores, making things slower.
+  #54 (thanks @freeman-jiang)
+- Fix `collectionName` column in vector search SQL (was still using old
+  `collectionId` from before YAML migration). #61 (thanks @jdvmi00)
+- Fix Qwen3 sampling params to prevent repetition loops — stock
+  temperature/top-p caused occasional infinite repeat patterns.
+- Add `--index` option to CLI argument parser (was documented but not wired
+  up). #84 (thanks @Tritlo)
+- Fix DisposedError during slow batch embedding. #41 (thanks @wuhup)
+
+## [0.7.0] - 2026-01-09
+
+First community contributions. The project gained external contributors,
+surfacing bugs that only appear in diverse environments — Homebrew sqlite-vec
+paths, case-sensitive model filenames, and sqlite-vec JOIN incompatibilities.
+
+### Changes
+
+- Indexing: native `realpathSync()` replaces `readlink -f` subprocess spawn
+  per file. On a 5000-file collection this eliminates 5000 shell spawns,
+  ~15% faster. #8 (thanks @burke)
+- Indexing: single-pass tokenization — chunking algorithm tokenized each
+  document twice (count then split); now tokenizes once and reuses. #9
+  (thanks @burke)
+
+### Fixes
+
+- Fix `vsearch` and `query` hanging — sqlite-vec's virtual table doesn't
+  support the JOIN pattern used; rewrote to subquery. #23 (thanks @mbrendan)
+- Fix MCP server exiting immediately after startup — process had no active
+  handles keeping the event loop alive. #29 (thanks @mostlydev)
+- Fix collection filter SQL to properly restrict vector search results.
+- Support non-ASCII filenames in collection filter.
+- Skip empty files during indexing instead of crashing on zero-length content.
+- Fix case sensitivity in Qwen3 model filename resolution. #15 (thanks
+  @gavrix)
+- Fix sqlite-vec loading on macOS with Homebrew (`BREW_PREFIX` detection).
+  #42 (thanks @komsit37)
+- Fix Nix flake to use correct `src/qmd.ts` path. #7 (thanks @burke)
+- Fix docid lookup with quotes support in get command. #36 (thanks
+  @JoshuaLelon)
+- Fix query expansion model size in documentation. #38 (thanks @odysseus0)
+
+## [0.6.0] - 2025-12-28
+
+Replaced Ollama HTTP API with node-llama-cpp for all LLM operations. Ollama
+adds convenience but also a running server dependency. node-llama-cpp loads
+GGUF models directly in-process — zero external dependencies. Models
+auto-download from HuggingFace on first use.
+
+### Changes
+
+- LLM: structured query expansion via JSON schema grammar constraints.
+  Model produces typed expansions — **lexical** (BM25 keywords), **vector**
+  (semantic rephrasings), **HyDE** (hypothetical document excerpts) — so each
+  routes to the right backend instead of sending everything everywhere.
+- LLM: lazy model loading with 2-minute inactivity auto-unload. Keeps memory
+  low when idle while avoiding ~3s model load on every query.
+- Search: conditional query expansion — when BM25 returns strong results, the
+  expensive LLM expansion is skipped entirely.
+- Search: multi-chunk reranking — documents with multiple relevant chunks
+  scored by aggregating across all chunks rather than best single chunk.
+- Search: cosine distance for vector search (was L2).
+- Search: embeddinggemma nomic-style prompt formatting.
+- Testing: evaluation harness with synthetic test documents and Hit@K metrics
+  for BM25, vector, and hybrid RRF.
+
+## [0.5.0] - 2025-12-13
+
+Collections and contexts moved from SQLite tables to YAML at
+`~/.config/qmd/index.yml`. SQLite was overkill for config — you can't share
+it, and it's opaque. YAML is human-readable and version-controllable. The
+migration was extensive (35+ commits) because every part of the system that
+touched collections or contexts had to be updated.
+
+### Changes
+
+- Config: YAML-based collections and contexts replace SQLite tables.
+  `collections` and `path_contexts` tables dropped from schema. Collections
+  support an optional `update:` command (e.g., `git pull`) before re-index.
+- CLI: `qmd collection add/list/remove/rename` commands with `--name` and
+  `--mask` glob pattern support.
+- CLI: `qmd ls` virtual file tree — list collections, files in a collection,
+  or files under a path prefix.
+- CLI: `qmd context add/list/check/rm` with hierarchical context inheritance.
+  A query to `qmd://notes/2024/jan/` inherits context from `notes/`,
+  `notes/2024/`, and `notes/2024/jan/`.
+- CLI: `qmd context add / "text"` for global context across all collections.
+- CLI: `qmd context check` audit command to find paths without context.
+- Paths: `qmd://` virtual URI scheme for portable document references.
+  `qmd://notes/ideas.md` works regardless of where the collection lives on
+  disk. Works in `get`, `multi-get`, `ls`, and context commands.
+- CLI: document IDs (docid) — first 6 chars of content hash for stable
+  references. Shown as `#abc123` in search results, usable with `get` and
+  `multi-get`.
+- CLI: `--line-numbers` flag for get command output.
+
+## [0.4.0] - 2025-12-10
+
+MCP server for AI agent integration. Without it, agents had to shell out to
+`qmd search` and parse CLI output. The monolithic `qmd.ts` (1840 lines) was
+split into focused modules with the project's first test suite (215 tests).
+
+### Changes
+
+- MCP: stdio server with tools for search, vector search, hybrid query,
+  document retrieval, and status. Runs over stdio transport for Claude
+  Desktop and MCP clients.
+- MCP: spec-compliant with June 2025 MCP specification — removed non-spec
+  `mimeType`, added `isError: true` to errors, `structuredContent` for
+  machine-readable results, proper URI encoding.
+- MCP: simplified tool naming (`qmd_search` → `search`) since MCP already
+  namespaces by server.
+- Architecture: extract `store.ts` (1221 LOC), `llm.ts` (539 LOC),
+  `formatter.ts` (359 LOC), `mcp.ts` (503 LOC) from monolithic `qmd.ts`.
+- Testing: 215 tests (store: 96, llm: 60, mcp: 59) with mocked Ollama for
+  fast, deterministic runs. Before this: zero tests.
+
+## [0.3.0] - 2025-12-08
+
+Document chunking for vector search. A 5000-word document about many topics
+gets a single embedding that averages everything together, matching poorly for
+specific queries. Chunking produces one embedding per ~900-token section with
+focused semantic signal.
+
+### Changes
+
+- Search: markdown-aware chunking — prefers heading boundaries, then paragraph
+  breaks, then sentence boundaries. 15% overlap between chunks ensures
+  cross-boundary queries still match.
+- Search: multi-chunk scoring bonus (+0.02 per additional chunk, capped at
+  +0.1 for 5+ chunks). Documents relevant in multiple sections rank higher.
+- CLI: display paths show collection-relative paths and extracted titles
+  (from H1 headings or YAML frontmatter) instead of raw filesystem paths.
+- CLI: `--all` flag returns all matches (use with `--min-score` to filter).
+- CLI: byte-based progress bar with ETA for `embed` command.
+- CLI: human-readable time formatting ("15m 4s" instead of "904.2s").
+- CLI: documents >64KB truncated with warning during embedding.
+
+## [0.2.0] - 2025-12-08
+
+### Changes
+
+- CLI: `--json`, `--csv`, `--files`, `--md`, `--xml` output format flags.
+  `--json` for programmatic access, `--files` for piping, `--md`/`--xml` for
+  LLM consumption, `--csv` for spreadsheets.
+- CLI: `qmd status` shows index health — document count, size, embedding
+  coverage, time since last update.
+- Search: weighted RRF — original query gets 2x weight relative to expanded
+  queries since the user's actual words are a more reliable signal.
+
+## [0.1.0] - 2025-12-07
+
+Initial implementation. Built in a single day for searching personal markdown
+notes, journals, and meeting transcripts.
+
+### Changes
+
+- Search: SQLite FTS5 with BM25 ranking. Chose SQLite over Elasticsearch
+  because QMD is a personal tool — single binary, no server dependencies.
+- Search: sqlite-vec for vector similarity. Same rationale: in-process, no
+  external vector database.
+- Search: Reciprocal Rank Fusion to combine BM25 and vector results. RRF is
+  parameter-free and handles missing signals gracefully.
+- LLM: Ollama for embeddings, reranking, and query expansion. Later replaced
+  with node-llama-cpp in 0.6.0.
+- CLI: `qmd add`, `qmd embed`, `qmd search`, `qmd vsearch`, `qmd query`,
+  `qmd get`. ~1800 lines of TypeScript in a single `qmd.ts` file.
+
+[Unreleased]: https://github.com/tobi/qmd/compare/v1.0.0...HEAD
+[1.0.0]: https://github.com/tobi/qmd/releases/tag/v1.0.0
+[0.9.0]: https://github.com/tobi/qmd/compare/v0.8.0...v0.9.0