kirograph 0.27.2 → 0.28.1

package/dist/bin/commands/help.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../../src/bin/commands/help.ts"],
-  "sourcesContent": ["import { Command } from 'commander';\nimport { printBanner } from '../banner';\n\ntype CommandEntry = { name: string; args?: string; desc: string; opts?: string[] };\ntype Group = { icon: string; title: string; commands: CommandEntry[]; examples: [string, string][] };\n\nconst c = {\n  reset:        '\\x1b[0m',\n  bold:         '\\x1b[1m',\n  dim:          '\\x1b[2m',\n  violet:       '\\x1b[38;5;99m',\n  purple:       '\\x1b[38;5;135m',\n  lavender:     '\\x1b[38;5;141m',\n  paleLavender: '\\x1b[38;5;183m',\n  gray:         '\\x1b[90m',\n  brown:        '\\x1b[38;5;130m',\n  green:        '\\x1b[32m',\n  cyan:         '\\x1b[36m',\n  underline:    '\\x1b[4m',\n};\n\nconst GROUPS: Group[] = [\n  {\n    icon: '\uD83D\uDD27', title: 'Setup',\n    commands: [\n      { name: 'install',       desc: 'Wire up MCP/instructions for an agent workspace', opts: ['--target <t>  kiro | cursor | claude | windsurf | ...', 'Kiro install: prompts to import global hooks'] },\n      { name: 'init',          args: '[path]', desc: 'Initialize KiroGraph in a project', opts: ['-i, --index  Index immediately after init'] },\n      { name: 'uninit',        args: '[path]', desc: 'Remove KiroGraph from a project',   opts: ['--force      Skip confirmation', '--target <t>  Target to clean up (or \"all\")'] },\n      { name: 'hook',          desc: 'Manage global Kiro hooks in ~/.kirograph/hooks/', opts: ['save [path]    Save workspace hooks to global store', 'import [path]  Import global hooks into workspace', 'list           List saved global hooks', '--all          Save or import all without prompting (save/import)'] },\n    ],\n    examples: [\n      ['kirograph install', 'Wire up Kiro MCP + hooks + steering'],\n      ['kirograph install --target cursor', 'Wire up Cursor MCP + rules + hooks'],\n      ['kirograph init --index', 'Init and immediately index'],\n      ['kirograph hook save', 'Save workspace hooks to your global library'],\n      ['kirograph hook import', 'Import global hooks into this project'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDCE6', title: 'Indexing',\n    commands: [\n      { name: 'index',         args: '[path]', desc: 'Full re-index of a project',             opts: ['--force     Force re-index all files'] },\n      { name: 'sync',          args: '[path]', desc: 'Incremental sync of changed files',       opts: ['--files <f> Specific files to sync'] },\n      { name: 'sync-if-dirty', args: '[path]', desc: 'Sync only if a dirty marker is present', opts: ['-q, --quiet  Suppress output'] },\n      { name: 'mark-dirty',    args: '[path]', desc: 'Write a dirty marker for deferred sync' },\n      { name: 'unlock',        args: '[path]', desc: 'Force-release a stale lock file' },\n    ],\n    examples: [\n      ['kirograph sync', 'Incremental sync of changed files'],\n      ['kirograph index --force', 'Force full re-index'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDD0D', title: 'Search',\n    commands: [\n      { name: 'status',   args: '[path]',    desc: 'Show index statistics and health' },\n      { name: 'query',    args: '<search>',  desc: 'Search for symbols by name',          opts: ['--kind <k>   Filter by kind', '--limit <n>  Max results'] },\n      { name: 'context',  args: '<task>',    desc: 'Build relevant code context for a task', opts: ['--max-nodes <n>  Max symbols', '--no-code  Exclude code', '--format <f>  markdown | json'] },\n      { name: 'files',    args: '[path]',    desc: 'Show project file structure',          opts: ['--format <f>  tree | flat | grouped | compact', '--filter <p>  Directory prefix', '--pattern <g>  Glob'] },\n      { name: 'path',     args: '<from> <to>', desc: 'Shortest path between two symbols' },\n      { name: 'affected', args: '[files...]', desc: 'Find test files affected by changes', opts: ['--stdin  Read from stdin', '-d <n>  Depth', '-q  Quiet'] },\n    ],\n    examples: [\n      ['kirograph query useState', 'Find symbols named useState'],\n      ['kirograph context \"add dark mode\"', 'Get context for a task'],\n      ['kirograph path LoginController Pool', 'How are these connected?'],\n      ['git diff --name-only | kirograph affected --stdin', 'Affected tests from git diff'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDCCA', title: 'Insights',\n    commands: [\n      { name: 'hotspots',   args: '[path]', desc: 'Most-connected symbols by edge degree',   opts: ['--limit <n>  Max results', '--format <f>  table | json'] },\n      { name: 'surprising', args: '[path]', desc: 'Non-obvious cross-file connections',      opts: ['--limit <n>  Max results'] },\n      { name: 'dead-code',  args: '[path]', desc: 'Unreferenced unexported symbols',         opts: ['--limit <n>  Max results'] },\n      { name: 'snapshot',   desc: 'Save/list/diff graph snapshots',                          opts: ['save [label]', 'list', 'diff [label]  --format summary|full|json'] },\n      { name: 'export',     desc: 'Interactive graph dashboard',                             opts: ['build [path]  Generate HTML', 'start [path]  Generate and open'] },\n    ],\n    examples: [\n      ['kirograph hotspots --limit 10', 'Top 10 most-connected symbols'],\n      ['kirograph snapshot save pre-refactor', 'Save before a refactor'],\n      ['kirograph snapshot diff pre-refactor', 'See what changed'],\n      ['kirograph export start', 'Open the graph dashboard'],\n    ],\n  },\n  {\n    icon: '\uD83C\uDFDB\uFE0F', title: 'Architecture',\n    commands: [\n      { name: 'architecture', args: '[path]', desc: 'Package graph and layer map',     opts: ['--packages  Packages only', '--layers  Layers only'] },\n      { name: 'coupling',     args: '[path]', desc: 'Coupling metrics per package',    opts: ['--sort <s>  instability | ca | ce | name', '--package <n>  Detail view'] },\n      { name: 'package',      args: '<name>', desc: 'Inspect a package',               opts: ['--no-files  Omit file list'] },\n    ],\n    examples: [\n      ['kirograph architecture --packages', 'List all detected packages'],\n      ['kirograph coupling --sort instability', 'Packages ranked by instability'],\n      ['kirograph package src/auth', 'Inspect the auth package'],\n    ],\n  },\n  {\n    icon: '\uD83E\uDDE0', title: 'Memory',\n    commands: [\n      { name: 'mem search',   args: '<query>', desc: 'Search past observations',       opts: ['--kind <k>  Filter by kind', '--limit <n>  Max results'] },\n      { name: 'mem store',    args: '<text>',  desc: 'Store an observation',           opts: ['--kind <k>  decision | error | pattern | architecture | note'] },\n      { name: 'mem timeline', desc: 'List recent sessions and observations' },\n      { name: 'mem status',   desc: 'Memory health dashboard' },\n      { name: 'mem prune',    desc: 'Remove old observations',                         opts: ['--older-than <d>  Duration (e.g. 90d)'] },\n      { name: 'mem export',   desc: 'Export observations',                             opts: ['--format <f>  jsonl | md'] },\n      { name: 'mem reembed',  desc: 'Re-embed after model change' },\n      { name: 'mem lint',     desc: 'Health check and auto-repair',                    opts: ['--fix  Auto-fix issues'] },\n    ],\n    examples: [\n      ['kirograph mem search \"auth decision\"', 'Search for past decisions'],\n      ['kirograph mem store \"use idempotency keys\" --kind decision', 'Store a decision'],\n      ['kirograph mem timeline', 'See recent sessions'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDD12', title: 'Security',\n    commands: [\n      { name: 'security', args: '[path]', desc: 'Security overview: vulnerabilities, verdicts, stale-data warnings' },\n      { name: 'vulns',    args: '[path]', desc: 'List vulnerabilities with reachability verdicts and severity',\n        opts: [\n          '--severity <level>  Filter by severity: critical, high, medium, low',\n          '--verdict <verdict>  Filter by verdict: affected, not_affected, under_investigation',\n          '--refresh  Trigger fresh vulnerability enrichment before listing',\n          '--add <cveId>  Manually register a CVE (requires --package and --version)',\n        ],\n      },\n      { name: 'reachability', args: '<target>', desc: 'Check reachability for a CVE or dependency: verdict, call paths, impact' },\n      { name: 'vuln suppress',   args: '<cveId>', desc: 'Mark a CVE as suppressed (false positive or accepted risk)',\n        opts: [\n          '--reason <text>   Reason for suppression',\n          '--expires <date>  Expiry date (e.g. 2026-12-31)',\n        ],\n      },\n      { name: 'vuln unsuppress', args: '<cveId>', desc: 'Remove a suppression' },\n      { name: 'vuln suppressions', desc: 'List all active suppressions', opts: ['--format json  JSON output'] },\n      { name: 'licenses', args: '[path]', desc: 'Show dependency licenses and check against policy (deny/warn lists)',\n        opts: [\n          '--policy             Show only policy violations',\n          '--deny <patterns>    Override deny list (comma-separated SPDX patterns)',\n          '--warn <patterns>    Override warn list (comma-separated SPDX patterns)',\n          '--format json        JSON output',\n        ],\n      },\n      { name: 'vex',       args: '[path]', desc: 'Export a VEX document (Vulnerability Exploitability eXchange)', opts: ['--output <file>  Write to file instead of stdout'] },\n      { name: 'sbom',      args: '[path]', desc: 'Export a Software Bill of Materials',                           opts: ['--output <file>  Write to file instead of stdout'] },\n      { name: 'staleness', args: '[path]', desc: 'Check dependency freshness \u2014 packages behind their latest version',\n        opts: [\n          '--threshold <n>  Show only packages with staleness_score >= n (default: 0.3)',\n          '--refresh        Fetch latest version info from registries before listing',\n          '--format <fmt>   table | json',\n        ],\n      },\n      { name: 'security export',     args: '[path]', desc: 'Generate HTML security dashboard', opts: ['--output <file>  Output path', '--open  Open in browser'] },\n      { name: 'security secrets',    args: '[path]', desc: 'Scan for hardcoded secrets with call-graph blast radius', opts: ['--include-tests  Include test files', '--severity <s>  Filter level', '--format json'] },\n      { name: 'security flows',      args: '[path]', desc: 'SAST-lite: detect dangerous data flows (SQL injection, eval, path traversal, etc.)', opts: ['--type sql|eval|deserialize|path|all', '--format json'] },\n      { name: 'security ci-report',  args: '[path]', desc: 'Generate CI/CD security report (JSON, SARIF for GitHub, or text)', opts: ['--format json|sarif|text', '--fail-on affected|any|critical', '--output <file>'] },\n      { name: 'attack-surface',      args: '[path]', desc: 'Map attack surface: routes \u2192 vulnerable deps with hop count and auth status', opts: ['--limit <n>', '--public-only', '--format json'] },\n      { name: 'supply-chain',        args: '[path]', desc: 'Supply chain health: OpenSSF Scorecard, maintainer count, abandoned packages', opts: ['--threshold critical|high|medium', '--refresh', '--format json'] },\n      { name: 'dep-confusion',       args: '[path]', desc: 'Detect dependency confusion: internal packages that exist in public registries', opts: ['--format json'] },\n      { name: 'remediation',         args: '[path]', desc: 'Remediation SLA tracking: days open, fix available since, overdue alerts', opts: ['--overdue-only', '--format json'] },\n      { name: 'pattern', args: '[pattern]', desc: 'AST structural search: live pattern search or library rule runner',\n        opts: [\n          '--list             Show all bundled SAST rules',\n          '--library <id>    Run a specific library rule',\n          '--lang <l>        Language filter (js, ts, python, go, ...)',\n          '--format json     JSON output',\n        ],\n      },\n    ],\n    examples: [\n      ['kirograph security', 'Overview: dep count, vuln count, verdict breakdown'],\n      ['kirograph security --refresh-staleness', 'Overview including stale dependency count'],\n      ['kirograph vulns', 'List all vulnerabilities with severity and verdict'],\n      ['kirograph vulns --stale', 'Show staleness score alongside each CVE'],\n      ['kirograph vulns --verdict under_investigation', 'Show only vulnerabilities still being investigated'],\n      ['kirograph vulns --severity critical --verdict affected', 'Critical confirmed vulnerabilities'],\n      ['kirograph vulns --refresh', 'Re-query OSV before listing'],\n      ['kirograph staleness', 'Show packages with staleness_score >= 0.3'],\n      ['kirograph staleness --refresh --threshold 0.5', 'Fetch latest versions and show very stale packages'],\n      ['kirograph reachability CVE-2023-12345', 'Check reachability for a specific CVE'],\n      ['kirograph reachability lodash', 'Check reachability for a dependency by package name'],\n      ['kirograph licenses', 'Show all dependency licenses'],\n      ['kirograph licenses --policy', 'Show only license policy violations'],\n      ['kirograph licenses --deny \"GPL-*,AGPL-*\"', 'Block all GPL/AGPL licenses'],\n      ['kirograph vex --output vex.json', 'Export CycloneDX VEX document'],\n      ['kirograph sbom --output sbom.json', 'Export SPDX SBOM'],\n      ['kirograph security export --open', 'Generate and open HTML security dashboard'],\n      ['kirograph security secrets', 'Scan for hardcoded secrets with call-graph blast radius'],\n      ['kirograph security flows', 'Detect dangerous data flows (SQL injection, eval, etc.)'],\n      ['kirograph security ci-report --format sarif --output results.sarif', 'SARIF report for GitHub Security tab'],\n      ['kirograph attack-surface --public-only', 'Show public routes reaching vulnerable deps'],\n      ['kirograph supply-chain --threshold high', 'Show high-risk supply chain findings'],\n      ['kirograph dep-confusion', 'Detect dependency confusion attack vectors'],\n      ['kirograph remediation --overdue-only', 'Show CVEs past their remediation SLA'],\n      ['kirograph vuln suppress CVE-2024-1234 --reason \"not in code path\"', 'Suppress a false positive CVE'],\n      ['kirograph vuln unsuppress CVE-2024-1234', 'Remove a suppression'],\n      ['kirograph vuln suppressions', 'List all active suppressions'],\n      ['kirograph pattern \"eval($X)\"', 'Find all eval() calls'],\n      ['kirograph pattern --list', 'Show all bundled SAST rules'],\n      ['kirograph pattern --library dangerous-eval-js', 'Run the dangerous-eval library rule'],\n    ],\n  },\n  {\n    icon: '\u2699\uFE0F', title: 'Agent',\n    commands: [\n      { name: 'caveman',     args: '[mode]',  desc: 'Communication style (off | lite | full | ultra)' },\n      { name: 'compression', args: '[level]', desc: 'Shell compression level (off | normal | aggressive | ultra)' },\n      { name: 'exec',        args: '<cmd>',   desc: 'Run command with token-optimized output', opts: ['-l <level>  Compression level', '-t <sec>  Timeout'] },\n      { name: 'gain',        desc: 'Token savings statistics',                                 opts: ['--graph  ASCII chart', '--history  Recent commands', '--daily  Day breakdown'] },\n      { name: 'serve',       desc: 'Start the MCP server',                                    opts: ['--mcp  Run as stdio MCP', '--path <p>  Project path'] },\n    ],\n    examples: [\n      ['kirograph caveman lite', 'Enable lite caveman mode'],\n      ['kirograph exec git status', 'Run git status with compression'],\n      ['kirograph gain --graph', 'Show token savings graph'],\n    ],\n  },\n];\n\nfunction renderGroup(group: Group, highlightIdx: number): string[] {\n  const lines: string[] = [];\n  const nameWidth = Math.max(...group.commands.map(cmd => (cmd.name + (cmd.args ? ' ' + cmd.args : '')).length)) + 2;\n\n  lines.push('');\n  lines.push(`  ${c.bold}${c.paleLavender}COMMANDS${c.reset}  ${c.dim}\u2191\u2193 select \u00B7 enter to copy \u00B7 q quit${c.reset}`);\n  lines.push('');\n\n  for (let i = 0; i < group.commands.length; i++) {\n    const cmd = group.commands[i]!;\n    const signature = cmd.name + (cmd.args ? ' ' + cmd.args : '');\n    const isHighlighted = i === highlightIdx;\n    const prefix = isHighlighted ? `${c.green}${c.bold}\u276F${c.reset} ` : '  ';\n    const namePart = isHighlighted\n      ? `${c.bold}${c.lavender}${cmd.name}${c.reset}${cmd.args ? ' ' + c.bold + cmd.args + c.reset : ''}`\n      : `${c.lavender}${cmd.name}${c.reset}${cmd.args ? ' ' + c.dim + cmd.args + c.reset : ''}`;\n    const pad = ' '.repeat(Math.max(0, nameWidth - signature.length));\n    lines.push(`${prefix}${namePart}${pad}${c.gray}${cmd.desc}${c.reset}`);\n    if (cmd.opts) {\n      for (const opt of cmd.opts) {\n        const [flag, ...rest] = opt.split(/  +/);\n        lines.push(`    ${c.purple}${flag}${c.reset}${rest.length ? '  ' + c.dim + rest.join('  ') + c.reset : ''}`);\n      }\n    }\n  }\n\n  if (group.examples.length > 0) {\n    lines.push('');\n    lines.push(`  ${c.bold}${c.paleLavender}EXAMPLES${c.reset}`);\n    lines.push('');\n    for (const [ex, desc] of group.examples) {\n      lines.push(`  ${c.violet}$${c.reset} ${c.lavender}${ex}${c.reset}`);\n      lines.push(`    ${c.dim}${desc}${c.reset}`);\n    }\n  }\n\n  return lines;\n}\n\nfunction renderTabs(selectedIdx: number): string {\n  return GROUPS.map((g, i) => {\n    if (i === selectedIdx) {\n      return `${c.bold}${c.violet}${c.underline}${g.icon} ${g.title}${c.reset}`;\n    }\n    return `${c.dim}${g.icon} ${g.title}${c.reset}`;\n  }).join('  ');\n}\n\n/**\n * Interactive tabbed help \u2014 left/right for tabs, up/down for commands, enter to copy.\n */\nexport function printInteractiveHelp(): void {\n  const CLEAR_LINE = '\\x1b[2K\\x1b[G';\n  let selectedTab = 0;\n  let selectedCmd = 0;\n  let prevLineCount = 0;\n\n  function render(first: boolean) {\n    if (!first && prevLineCount > 0) {\n      process.stdout.write(`\\x1b[${prevLineCount}A`);\n      for (let i = 0; i < prevLineCount; i++) {\n        process.stdout.write(`${CLEAR_LINE}\\n`);\n      }\n      process.stdout.write(`\\x1b[${prevLineCount}A`);\n    }\n\n    const lines: string[] = [];\n    lines.push('');\n    lines.push(`  ${renderTabs(selectedTab)}`);\n    lines.push(`  ${c.dim}\u2190 \u2192 tabs \u00B7 \u2191 \u2193 commands \u00B7 enter to use \u00B7 q quit${c.reset}`);\n    lines.push(...renderGroup(GROUPS[selectedTab]!, selectedCmd));\n    lines.push('');\n\n    for (const line of lines) {\n      process.stdout.write(`${CLEAR_LINE}${line}\\n`);\n    }\n    prevLineCount = lines.length;\n  }\n\n  printBanner();\n  console.log(`\\n${c.bold}${c.paleLavender}USAGE${c.reset}  ${c.lavender}kirograph${c.reset} ${c.gray}<command>${c.reset} ${c.dim}[options]${c.reset}`);\n\n  render(true);\n\n  // Enter raw mode for interactive navigation\n  const stdin = process.stdin;\n  if (!stdin.isTTY) {\n    // Non-interactive: just print all groups\n    for (let i = 1; i < GROUPS.length; i++) {\n      const lines = renderGroup(GROUPS[i]!, -1);\n      for (const line of lines) console.log(line);\n    }\n    return;\n  }\n\n  stdin.setRawMode(true);\n  stdin.resume();\n  stdin.setEncoding('utf8');\n\n  function cleanup() {\n    stdin.removeListener('data', onData);\n    stdin.setRawMode(false);\n    stdin.pause();\n  }\n\n  function onData(key: string) {\n    // Arrow keys and other escape sequences start with \\x1b[\n    if (key.startsWith('\\x1b[')) {\n      if (key === '\\x1b[C') { // right arrow \u2014 next tab\n        selectedTab = (selectedTab + 1) % GROUPS.length;\n        selectedCmd = 0;\n        render(false);\n      } else if (key === '\\x1b[D') { // left arrow \u2014 prev tab\n        selectedTab = (selectedTab - 1 + GROUPS.length) % GROUPS.length;\n        selectedCmd = 0;\n        render(false);\n      } else if (key === '\\x1b[B') { // down arrow \u2014 next command\n        const maxCmd = GROUPS[selectedTab]!.commands.length - 1;\n        selectedCmd = Math.min(selectedCmd + 1, maxCmd);\n        render(false);\n      } else if (key === '\\x1b[A') { // up arrow \u2014 prev command\n        selectedCmd = Math.max(selectedCmd - 1, 0);\n        render(false);\n      }\n      // Ignore other escape sequences\n      return;\n    }\n\n    if (key === '\\r' || key === '\\n') { // enter \u2014 copy command to terminal\n      cleanup();\n      const cmd = GROUPS[selectedTab]!.commands[selectedCmd]!;\n      const fullCmd = `kirograph ${cmd.name}${cmd.args ? ' ' + cmd.args : ''}`;\n      // Clear the interactive UI and print the command\n      process.stdout.write(`\\x1b[${prevLineCount}A`);\n      for (let i = 0; i < prevLineCount; i++) {\n        process.stdout.write(`${CLEAR_LINE}\\n`);\n      }\n      process.stdout.write(`\\x1b[${prevLineCount}A`);\n      console.log(`\\n  ${c.green}${c.bold}$${c.reset} ${fullCmd}\\n`);\n      process.exit(0);\n    } else if (key === 'q' || key === '\\x03') { // q, ctrl+c\n      cleanup();\n      console.log();\n      process.exit(0);\n    }\n  }\n\n  stdin.on('data', onData);\n}\n\n/**\n * Non-interactive full help (for piping, --help flag).\n */\nexport function printColoredHelp(): void {\n\n  console.log(`\\n${c.bold}${c.paleLavender}USAGE${c.reset}`);\n  console.log(`  ${c.lavender}kirograph${c.reset} ${c.gray}<command>${c.reset} ${c.dim}[options]${c.reset}\\n`);\n\n  for (const group of GROUPS) {\n    console.log(`${c.bold}${c.paleLavender}${group.icon} ${group.title.toUpperCase()}${c.reset}\\n`);\n    const nameWidth = Math.max(...group.commands.map(cmd => (cmd.name + (cmd.args ? ' ' + cmd.args : '')).length)) + 2;\n    for (const cmd of group.commands) {\n      const signature = cmd.name + (cmd.args ? ' ' + cmd.args : '');\n      const namePart = `${c.lavender}${cmd.name}${c.reset}${cmd.args ? ' ' + c.dim + cmd.args + c.reset : ''}`;\n      const pad = ' '.repeat(Math.max(0, nameWidth - signature.length));\n      console.log(`  ${namePart}${pad}${c.gray}${cmd.desc}${c.reset}`);\n      if (cmd.opts) {\n        for (const opt of cmd.opts) {\n          const [flag, ...rest] = opt.split(/  +/);\n          console.log(`    ${c.purple}${flag}${c.reset}${rest.length ? '  ' + c.dim + rest.join('  ') + c.reset : ''}`);\n        }\n      }\n    }\n    console.log();\n  }\n\n  console.log(`${c.bold}${c.paleLavender}GLOBAL FLAGS${c.reset}\\n`);\n  console.log(`  ${c.purple}-h, --help${c.reset}     ${c.gray}Show this help${c.reset}`);\n  console.log(`  ${c.purple}-V, --version${c.reset}  ${c.gray}Show version number${c.reset}\\n`);\n\n\n  console.log(`${c.bold}${c.paleLavender}EXAMPLES${c.reset}\\n`);\n\n  const exampleGroups: Array<{ title: string; examples: [string, string][] }> = [\n    {\n      title: '\uD83D\uDD27 Setup & indexing',\n      examples: [\n        ['kirograph install',                              'Wire up Kiro MCP + hooks + steering for the current workspace'],\n        ['kirograph install --target claude',              'Wire up Claude Code MCP + project memory'],\n        ['kirograph install --target codex',               'Install Codex project instructions and print MCP config'],\n        ['kirograph init --index',                         'Init and immediately index the project'],\n        ['kirograph hook save',                            'Save workspace hooks to ~/.kirograph/hooks/'],\n        ['kirograph hook import',                          'Import global hooks into .kiro/hooks/'],\n        ['kirograph sync',                                 'Incremental sync of changed files'],\n      ],\n    },\n    {\n      title: '\uD83D\uDD0D Search & exploration',\n      examples: [\n        ['kirograph query useState',                       'Find all symbols named useState'],\n        ['kirograph context \"add dark mode\"',              'Get relevant code context for a task'],\n        ['kirograph files --format grouped',               'Show files grouped by directory'],\n        ['kirograph path LoginController DatabasePool',     'Find how two symbols are connected'],\n        ['kirograph affected src/auth.ts',                 'Find tests affected by a change'],\n        ['git diff --name-only | kirograph affected --stdin', 'Affected tests from a git diff'],\n        ['kirograph export start',                         'Open the interactive graph dashboard in the browser'],\n        ['kirograph export build -o /tmp/graph',           'Export the dashboard to a custom directory'],\n      ],\n    },\n    {\n      title: '\uD83D\uDCCA Graph insights',\n      examples: [\n        ['kirograph hotspots --limit 10',                  'Top 10 most-connected symbols'],\n        ['kirograph surprising',                           'Find unexpected cross-module connections'],\n        ['kirograph dead-code',                            'Find unreferenced unexported symbols'],\n        ['kirograph snapshot save pre-refactor',           'Save a named snapshot before a refactor'],\n        ['kirograph snapshot diff pre-refactor',           'Diff current graph vs the named snapshot'],\n      ],\n    },\n    {\n      title: '\uD83C\uDFDB\uFE0F Architecture',\n      examples: [\n        ['kirograph architecture --packages',              'List all detected packages'],\n        ['kirograph coupling --sort instability',          'Show packages ranked by instability'],\n        ['kirograph package src/auth',                     'Inspect the auth package'],\n      ],\n    },\n    {\n      title: '\uD83D\uDD12 Security',\n      examples: [\n        ['kirograph security',                                        'Overview: dep count, vuln count, verdict breakdown'],\n        ['kirograph security --refresh-staleness',                   'Overview including stale dependency count'],\n        ['kirograph vulns',                                           'List all vulnerabilities'],\n        ['kirograph vulns --stale',                                   'Show staleness score alongside each CVE'],\n        ['kirograph vulns --verdict under_investigation',             'Vulnerabilities still being investigated'],\n        ['kirograph vulns --severity critical --verdict affected',    'Critical confirmed vulnerabilities'],\n        ['kirograph vulns --refresh',                                 'Re-query OSV then list'],\n        ['kirograph staleness',                                       'Show packages with staleness_score >= 0.3'],\n        ['kirograph staleness --refresh --threshold 0.5',            'Fetch latest versions and show very stale packages'],\n        ['kirograph reachability CVE-2023-12345',                     'Check reachability for a specific CVE'],\n        ['kirograph reachability lodash',                             'Check reachability for a dependency by package name'],\n        ['kirograph licenses',                                        'Show all dependency licenses'],\n        ['kirograph licenses --policy',                              'Show only license policy violations'],\n        ['kirograph licenses --deny \"GPL-*,AGPL-*\"',                 'Block all GPL/AGPL licenses'],\n        ['kirograph vex --output vex.json',                          'Export CycloneDX VEX document'],\n        ['kirograph sbom --output sbom.json',                        'Export SPDX SBOM'],\n        ['kirograph vuln suppress CVE-2024-1234 --reason \"not in code path\"', 'Suppress a false positive CVE'],\n        ['kirograph vuln suppress CVE-2024-1234 --expires 2026-12-31', 'Suppress with expiry date'],\n        ['kirograph vuln unsuppress CVE-2024-1234',                  'Remove a suppression'],\n        ['kirograph vuln suppressions',                              'List all active suppressions'],\n        ['kirograph pattern \"eval($X)\"',                             'Find all eval() calls (requires enablePatterns: true)'],\n        ['kirograph pattern --list',                                 'Show all bundled SAST pattern rules'],\n        ['kirograph pattern --library dangerous-eval-js',            'Run a specific library rule'],\n      ],\n    },\n    {\n      title: '\u2699\uFE0F Agent',\n      examples: [\n        ['kirograph caveman full',                         'Enable full caveman mode for the agent'],\n        ['kirograph caveman off',                          'Disable caveman mode'],\n        ['kirograph compression aggressive',              'Set compression to aggressive level'],\n        ['kirograph compression off',                      'Disable compression hook (tool still available)'],\n        ['kirograph exec git status',                      'Run git status with compression'],\n        ['kirograph exec --level ultra npm test',          'Run tests with ultra compression'],\n        ['kirograph exec --raw cargo build',               'Show raw vs compressed comparison'],\n        ['kirograph gain --graph',                         'Show token savings graph'],\n        ['kirograph mem search \"auth decision\"',            'Search memory for past decisions'],\n        ['kirograph mem store \"use idempotency keys\" --kind decision', 'Store a decision'],\n        ['kirograph data list',                             'List all indexed datasets'],\n        ['kirograph data describe tests-fixtures-users',    'Show schema and column profiles'],\n        ['kirograph data query orders --filter status:eq:shipped --limit 10', 'Query rows with filters'],\n        ['kirograph data aggregate orders --group-by region --metric sum:amount', 'Server-side aggregation'],\n        ['kirograph serve --mcp',                          'Start the MCP server'],\n      ],\n    },\n  ];\n\n  for (const eg of exampleGroups) {\n    console.log(`  ${c.dim}${eg.title}${c.reset}`);\n    for (const [ex, desc] of eg.examples) {\n      console.log(`  ${c.violet}$${c.reset} ${c.lavender}${ex}${c.reset}`);\n      console.log(`    ${c.dim}${desc}${c.reset}`);\n    }\n    console.log();\n  }\n}\n\nexport function register(program: Command): void {\n  program.configureHelp({ formatHelp: () => '' });\n  program.addHelpText('afterAll', '');\n  // Disable Commander's built-in --help to prevent process.exit\n  program.helpOption(false);\n}\n"],
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+  "sourcesContent": ["import { Command } from 'commander';\nimport { printBanner } from '../banner';\n\ntype CommandEntry = { name: string; args?: string; desc: string; opts?: string[] };\ntype Group = { icon: string; title: string; commands: CommandEntry[]; examples: [string, string][] };\n\nconst c = {\n  reset:        '\\x1b[0m',\n  bold:         '\\x1b[1m',\n  dim:          '\\x1b[2m',\n  violet:       '\\x1b[38;5;99m',\n  purple:       '\\x1b[38;5;135m',\n  lavender:     '\\x1b[38;5;141m',\n  paleLavender: '\\x1b[38;5;183m',\n  gray:         '\\x1b[90m',\n  brown:        '\\x1b[38;5;130m',\n  green:        '\\x1b[32m',\n  cyan:         '\\x1b[36m',\n  underline:    '\\x1b[4m',\n};\n\nconst GROUPS: Group[] = [\n  {\n    icon: '\uD83D\uDD27', title: 'Setup',\n    commands: [\n      { name: 'install',       desc: 'Wire up MCP/instructions for an agent workspace', opts: ['--target <t>  kiro | cursor | claude | windsurf | ...', 'Kiro install: prompts to import global hooks'] },\n      { name: 'init',          args: '[path]', desc: 'Initialize KiroGraph in a project', opts: ['-i, --index  Index immediately after init'] },\n      { name: 'uninit',        args: '[path]', desc: 'Remove KiroGraph from a project',   opts: ['--force      Skip confirmation', '--target <t>  Target to clean up (or \"all\")'] },\n      { name: 'hook',          desc: 'Manage global Kiro hooks in ~/.kirograph/hooks/', opts: ['save [path]    Save workspace hooks to global store', 'import [path]  Import global hooks into workspace', 'list           List saved global hooks', '--all          Save or import all without prompting (save/import)'] },\n      { name: 'doctor',        args: '[path]', desc: 'Health check: index, config, hooks, and permissions', opts: ['--fix  Auto-repair fixable issues'] },\n    ],\n    examples: [\n      ['kirograph install', 'Wire up Kiro MCP + hooks + steering'],\n      ['kirograph install --target claude', 'Wire up Claude Code MCP + project memory'],\n      ['kirograph init --index', 'Init and immediately index'],\n      ['kirograph hook save', 'Save workspace hooks to your global library'],\n      ['kirograph hook import', 'Import global hooks into this project'],\n      ['kirograph doctor --fix', 'Check and auto-repair installation issues'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDCE6', title: 'Indexing',\n    commands: [\n      { name: 'index',         args: '[path]', desc: 'Full re-index of a project',             opts: ['--force     Force re-index all files'] },\n      { name: 'sync',          args: '[path]', desc: 'Incremental sync of changed files',       opts: ['--files <f> Specific files to sync'] },\n      { name: 'sync-if-dirty', args: '[path]', desc: 'Sync only if a dirty marker is present', opts: ['-q, --quiet  Suppress output'] },\n      { name: 'mark-dirty',    args: '[path]', desc: 'Write a dirty marker for deferred sync' },\n      { name: 'unlock',        args: '[path]', desc: 'Force-release a stale lock file' },\n    ],\n    examples: [\n      ['kirograph sync', 'Incremental sync of changed files'],\n      ['kirograph index --force', 'Force full re-index'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDD0D', title: 'Search',\n    commands: [\n      { name: 'status',   args: '[path]',    desc: 'Show index statistics and health' },\n      { name: 'query',    args: '<search>',  desc: 'Search for symbols by name',                        opts: ['--kind <k>   Filter by kind', '--limit <n>  Max results'] },\n      { name: 'context',  args: '<task>',    desc: 'Build relevant code context for a task',            opts: ['--max-nodes <n>  Max symbols', '--no-code  Exclude code', '--format <f>  markdown | json'] },\n      { name: 'files',    args: '[path]',    desc: 'Show project file structure',                        opts: ['--format <f>  tree | flat | grouped | compact', '--filter <p>  Directory prefix', '--pattern <g>  Glob'] },\n      { name: 'path',     args: '<from> <to>', desc: 'Shortest dependency path between two symbols' },\n      { name: 'affected', args: '[files...]', desc: 'Find test files affected by changed source files', opts: ['--stdin  Read from stdin', '-d <n>  Depth', '-q  Quiet'] },\n      { name: 'callers',  args: '<symbol>',  desc: 'List symbols that call a given function or method', opts: ['--limit <n>  Max results'] },\n      { name: 'callees',  args: '<symbol>',  desc: 'List symbols called by a given function or method', opts: ['--limit <n>  Max results'] },\n      { name: 'impact',   args: '<symbol>',  desc: 'Show symbols affected by changing a given symbol',  opts: ['-d, --depth <n>  Max traversal depth'] },\n    ],\n    examples: [\n      ['kirograph query useState', 'Find symbols named useState'],\n      ['kirograph context \"add dark mode\"', 'Get context for a task'],\n      ['kirograph callers parseToken', 'Who calls parseToken?'],\n      ['kirograph callees handleRequest', 'What does handleRequest call?'],\n      ['kirograph impact UserService', 'What breaks if UserService changes?'],\n      ['git diff --name-only | kirograph affected --stdin', 'Affected tests from git diff'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDCCA', title: 'Insights',\n    commands: [\n      { name: 'hotspots',          args: '[path]', desc: 'Most-connected symbols by edge degree',           opts: ['--limit <n>  Max results', '--format <f>  table | json'] },\n      { name: 'surprising',        args: '[path]', desc: 'Non-obvious cross-file connections',              opts: ['--limit <n>  Max results'] },\n      { name: 'dead-code',         args: '[path]', desc: 'Unreferenced unexported symbols',                 opts: ['--limit <n>  Max results'] },\n      { name: 'circular-deps',     args: '[path]', desc: 'Find circular dependency cycles',                 opts: ['-j, --json  JSON output'] },\n      { name: 'largest',           args: '[path]', desc: 'Symbols ranked by lines of code',                 opts: ['--limit <n>  Max results'] },\n      { name: 'rank',              args: '[path]', desc: 'Symbols ranked by fan-in or fan-out edge count',  opts: ['--by <by>  fan-in | fan-out'] },\n      { name: 'distribution',      args: '[dir]',  desc: 'Symbol-kind breakdown per file or directory',     opts: ['--limit <n>  Max results'] },\n      { name: 'god-class',         args: '[path]', desc: 'Classes ranked by member count (god-class risk)', opts: ['--limit <n>  Max results'] },\n      { name: 'gini',              args: '[path]', desc: 'Gini inequality coefficient of a metric',         opts: ['--metric <m>  loc | fan-in | fan-out'] },\n      { name: 'snapshot',          desc: 'Save/list/diff graph snapshots',                                  opts: ['save [label]', 'list', 'diff [label]  --format summary|full|json'] },\n      { name: 'export',            desc: 'Interactive graph dashboard',                                     opts: ['build [path]  Generate HTML', 'start [path]  Generate and open'] },\n    ],\n    examples: [\n      ['kirograph hotspots --limit 10', 'Top 10 most-connected symbols'],\n      ['kirograph circular-deps', 'Find all circular dependency cycles'],\n      ['kirograph largest --limit 20', 'Biggest functions by LOC'],\n      ['kirograph god-class', 'Find potential god classes'],\n      ['kirograph snapshot save pre-refactor', 'Save before a refactor'],\n      ['kirograph export start', 'Open the graph dashboard'],\n    ],\n  },\n  {\n    icon: '\uD83C\uDFDB\uFE0F', title: 'Architecture',\n    commands: [\n      { name: 'architecture',    args: '[path]',   desc: 'Package graph and layer map',                                opts: ['--packages  Packages only', '--layers  Layers only'] },\n      { name: 'coupling',        args: '[path]',   desc: 'Coupling metrics per package',                              opts: ['--sort <s>  instability | ca | ce | name', '--package <n>  Detail view'] },\n      { name: 'package',         args: '<name>',   desc: 'Inspect a package',                                         opts: ['--no-files  Omit file list'] },\n      { name: 'type-hierarchy',  args: '<symbol>', desc: 'Traverse base/derived types of a class or interface',       opts: ['--direction <dir>  up | down | both'] },\n      { name: 'communities',     args: '[path]',   desc: 'Detect code communities (clusters of related symbols)' },\n      { name: 'manifest',        args: '[path]',   desc: 'Workspace manifest: packages, versions, licenses, version drift' },\n    ],\n    examples: [\n      ['kirograph architecture --packages', 'List all detected packages'],\n      ['kirograph coupling --sort instability', 'Packages ranked by instability'],\n      ['kirograph type-hierarchy UserRepository --direction up', 'What interfaces does this implement?'],\n      ['kirograph communities', 'Find tightly coupled clusters'],\n      ['kirograph manifest', 'Show all dependency versions and drift'],\n    ],\n  },\n  {\n    icon: '\uD83C\uDFE5', title: 'Code Health',\n    commands: [\n      { name: 'module-api',         args: '[path]',          desc: 'List all exported symbols in a file or directory',                  opts: ['--limit <n>  Max results'] },\n      { name: 'rename-preview',     args: '<symbol>',        desc: 'Show all reference sites for a symbol before renaming',            opts: ['--limit <n>  Max results'] },\n      { name: 'doc-coverage',       args: '[path]',          desc: 'Find exported symbols missing docstrings',                         opts: ['--limit <n>  Max results'] },\n      { name: 'inheritance-depth',  args: '[path]',          desc: 'Find deepest inheritance chains',                                  opts: ['--limit <n>  Max results'] },\n      { name: 'recursion',          args: '[path]',          desc: 'Find recursive and mutually-recursive functions',                  opts: ['--limit <n>  Max results'] },\n      { name: 'annotations',        args: '[path]',          desc: 'Decorator/attribute histogram across the codebase',               opts: ['--decorator <name>  Filter by name'] },\n      { name: 'unused-imports',     args: '[path]',          desc: 'Find import nodes with zero resolved downstream edges',           opts: ['--limit <n>  Max results'] },\n      { name: 'dependency-depth',   args: '[path]',          desc: 'Topological depth of each file in the import graph',             opts: ['--limit <n>  Max files'] },\n      { name: 'session',            desc: 'Save or compare session baselines for tracking changes',                                   opts: ['start  Start a session baseline', 'end    Compare current state to baseline'] },\n      { name: 'refactor',           desc: 'Refactoring tools: rename preview and community-driven suggestions',                       opts: ['rename <symbol>  Preview rename locations', 'suggest  Get refactoring suggestions'] },\n    ],\n    examples: [\n      ['kirograph module-api src/auth', 'List public API of the auth module'],\n      ['kirograph rename-preview handleLogin', 'Find all sites before renaming'],\n      ['kirograph doc-coverage', 'Find undocumented exports'],\n      ['kirograph unused-imports', 'Find dead import statements'],\n      ['kirograph session start && <edit> && kirograph session end', 'Diff graph before and after a change'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDD2C', title: 'Analysis',\n    commands: [\n      { name: 'complexity',      args: '[path]', desc: 'Rank functions by cyclomatic, cognitive, and maintainability score', opts: ['--limit <n>  Max results'] },\n      { name: 'simplify-scan',   args: '[path]', desc: 'Find candidates for simplification by complexity and dead code',    opts: ['--limit <n>  Max results'] },\n      { name: 'health',          args: '[path]', desc: 'Composite codebase health score (0-10000) with grade' },\n      { name: 'dsm',             args: '[path]', desc: 'Design Structure Matrix \u2014 detect strongly coupled module groups',   opts: ['--limit <n>  Max groups'] },\n      { name: 'test-risk',       args: '[path]', desc: 'Rank untested code by risk score (complexity \u00D7 fan-in)',           opts: ['--limit <n>  Max results'] },\n      { name: 'test-coverage',   args: '[path]', desc: 'Show test coverage gaps from lcov/Istanbul reports',              opts: ['--sort <order>  asc (worst first) | desc'] },\n    ],\n    examples: [\n      ['kirograph health', 'Get overall health score and grade'],\n      ['kirograph complexity --limit 10', 'Top 10 most complex functions'],\n      ['kirograph test-risk', 'Which untested code is highest risk?'],\n      ['kirograph test-coverage', 'Show worst-covered files first'],\n      ['kirograph dsm', 'Find tightly coupled module groups'],\n    ],\n  },\n  {\n    icon: '\uD83C\uDF3F', title: 'Git',\n    commands: [\n      { name: 'diff-context',    args: '[path]',           desc: 'Changed symbols, their callers/callees, and affected tests', opts: ['--staged  Use staged changes only'] },\n      { name: 'commit-context',  args: '[path]',           desc: 'Structured summary of staged changes for a commit message' },\n      { name: 'pr-context',      args: '<base> [head]',    desc: 'Semantic diff between two git refs for PR descriptions',    opts: ['--format <fmt>  text | json'] },\n      { name: 'changelog',       args: '<ref1> <ref2>',    desc: 'Human-readable semantic diff between two git refs' },\n      { name: 'test-map',        args: '[symbol]',         desc: 'Map symbols to test files; show uncovered symbols',         opts: ['--limit <n>  Max results'] },\n    ],\n    examples: [\n      ['kirograph diff-context --staged', 'What does my staged diff actually change?'],\n      ['kirograph commit-context', 'Generate a structured commit message draft'],\n      ['kirograph pr-context main', 'Semantic PR description vs main'],\n      ['kirograph changelog v1.0 v1.1', 'What changed between two tags?'],\n      ['kirograph test-map', 'Which symbols have no test coverage?'],\n    ],\n  },\n  {\n    icon: '\u270F\uFE0F', title: 'Edit',\n    commands: [\n      { name: 'str-replace',   args: '<file> <old> <new>', desc: 'Replace unique string anchor in a file; fails on 0 or >1 matches' },\n      { name: 'multi-replace', args: '<file> <pairs-json>', desc: 'Multiple string replacements as an all-or-nothing transaction' },\n      { name: 'insert-at',     args: '<file> <anchor> <content>', desc: 'Insert content before or after an anchor or line number', opts: ['--after  Insert after anchor', '--line  Treat anchor as line number'] },\n      { name: 'ast-rewrite',   args: '<file> <pattern> <rewrite>', desc: 'Structural rewrite via ast-grep (requires ast-grep on PATH)' },\n    ],\n    examples: [\n      ['kirograph str-replace auth.ts \"return null\" \"return undefined\"', 'Safe replace a unique string'],\n      ['kirograph insert-at server.ts \"app.listen\" \"app.use(logger());\" --before', 'Insert before a line'],\n      ['kirograph ast-rewrite src/api.ts \"console.log($MSG)\" \"logger.debug($MSG)\"', 'Structural rewrite'],\n    ],\n  },\n  {\n    icon: '\uD83C\uDF32', title: 'Branch',\n    commands: [\n      { name: 'branch list',          desc: 'List tracked branches with size and last-sync time' },\n      { name: 'branch add',           args: '[name]', desc: 'Start tracking a branch (copies current index)' },\n      { name: 'branch remove',        args: '<name>', desc: 'Stop tracking a branch and delete its DB' },\n      { name: 'branch gc',            desc: 'Remove DBs for branches that no longer exist in git' },\n      { name: 'branch diff',          args: '<a> <b>', desc: 'Symbol diff between two tracked branch DBs' },\n      { name: 'branch search',        args: '<name> <query>', desc: 'Search symbols in a branch DB without switching' },\n    ],\n    examples: [\n      ['kirograph branch list', 'See all tracked branches'],\n      ['kirograph branch add feature/auth', 'Track the auth branch'],\n      ['kirograph branch diff main feature/auth', 'What symbols changed?'],\n      ['kirograph branch search feature/auth \"handleLogin\"', 'Search in branch without switching'],\n      ['kirograph branch gc', 'Clean up deleted branches'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDCDA', title: 'Docs',\n    commands: [\n      { name: 'docs toc',      args: '[file]',  desc: 'Table of contents for a file or the whole project' },\n      { name: 'docs search',   args: '<query>', desc: 'Full-text search over documentation sections',        opts: ['--limit <n>  Max results', '--section <id>  Restrict to section'] },\n      { name: 'docs section',  args: '<id>',    desc: 'Print the full content of a section by ID' },\n      { name: 'docs outline',  args: '<file>',  desc: 'Print heading hierarchy for a document' },\n      { name: 'docs refs',     args: '<id>',    desc: 'Show code-to-doc and doc-to-code cross-references' },\n      { name: 'docs reindex',  desc: 'Force re-index all documentation files' },\n      { name: 'docs lint',     desc: 'Find broken refs, stale sections, FTS desync' },\n    ],\n    examples: [\n      ['kirograph docs toc', 'Table of contents for the project'],\n      ['kirograph docs search \"authentication\"', 'Find docs about auth'],\n      ['kirograph docs section api.auth.login', 'Read a specific section'],\n      ['kirograph docs refs api.auth.login', 'Which code references this doc section?'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDDC4\uFE0F', title: 'Data',\n    commands: [\n      { name: 'data list',           desc: 'List all indexed datasets' },\n      { name: 'data describe',       args: '<dataset>', desc: 'Show schema and column profiles',                     opts: ['--format <f>  table | json'] },\n      { name: 'data query',          args: '<dataset>', desc: 'Query rows with filters',                             opts: ['--filter <f>  col:op:val', '--limit <n>  Max rows', '--format <f>  table | json | csv'] },\n      { name: 'data aggregate',      args: '<dataset>', desc: 'Server-side GROUP BY aggregation',                   opts: ['--group-by <col>', '--metric <agg:col>  sum|avg|count|min|max'] },\n      { name: 'data search',         args: '<dataset> <q>', desc: 'Search column names and sample values' },\n      { name: 'data join',           args: '<left> <right>', desc: 'SQL JOIN across two indexed datasets',          opts: ['--left-col <c>  Join key', '--right-col <c>  Join key', '--type inner|left|right'] },\n      { name: 'data correlations',   args: '<dataset>', desc: 'Pairwise Pearson correlations between numeric columns' },\n      { name: 'data quality',        args: '<dataset>', desc: 'Data quality triage: rank columns by risk' },\n      { name: 'data drift',          args: '<dataset>', desc: 'Show schema drift between last two indexes' },\n      { name: 'data history',        args: '<dataset>', desc: 'Show history of schema changes for a dataset' },\n    ],\n    examples: [\n      ['kirograph data list', 'List all indexed datasets'],\n      ['kirograph data describe orders', 'Schema and column profiles for orders'],\n      ['kirograph data query orders --filter status:eq:shipped', 'Filter rows'],\n      ['kirograph data aggregate orders --group-by region --metric sum:amount', 'Aggregate by region'],\n      ['kirograph data join users orders --left-col id --right-col user_id', 'Join datasets'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDCD6', title: 'Wiki',\n    commands: [\n      { name: 'wiki init',       desc: 'Initialize wiki: create SCHEMA.md and MANIFEST.md' },\n      { name: 'wiki ingest',     args: '[source]', desc: 'Print the ingest prompt for the LLM (reads file or stdin)' },\n      { name: 'wiki search',     args: '<query>',  desc: 'Full-text search over wiki pages',                           opts: ['--limit <n>  Max results'] },\n      { name: 'wiki page',       args: '<slug>',   desc: 'Print the full content of a wiki page' },\n      { name: 'wiki list',       desc: 'List all wiki pages' },\n      { name: 'wiki lint',       desc: 'Health check the wiki for broken links, orphans, contradictions' },\n      { name: 'wiki reindex',    desc: 'Rebuild SQLite index from .kirograph/wiki/*.md files' },\n      { name: 'wiki status',     desc: 'Wiki subsystem stats: page count, source count, oldest/newest page' },\n      { name: 'wiki synthesize', desc: 'Run local-model wiki synthesis over the pending source queue' },\n      { name: 'wiki apply-diff', args: '[diff]',   desc: 'Apply a WIKI_DIFF string to the wiki' },\n    ],\n    examples: [\n      ['kirograph wiki init', 'Initialize the wiki in this project'],\n      ['kirograph wiki search \"authentication flow\"', 'Find wiki pages about auth'],\n      ['kirograph wiki page arch-overview', 'Read a specific wiki page'],\n      ['kirograph wiki lint', 'Check wiki health'],\n      ['kirograph wiki status', 'How many pages and sources?'],\n    ],\n  },\n  {\n    icon: '\uD83E\uDDE0', title: 'Memory',\n    commands: [\n      { name: 'mem search',   args: '<query>', desc: 'Search past observations',                  opts: ['--kind <k>  Filter by kind', '--limit <n>  Max results'] },\n      { name: 'mem store',    args: '<text>',  desc: 'Store an observation',                      opts: ['--kind <k>  decision | error | pattern | architecture | note'] },\n      { name: 'mem capture',  args: '<text>',  desc: 'Passively extract multiple observations from free-form text' },\n      { name: 'mem timeline', desc: 'List recent sessions and observations' },\n      { name: 'mem status',   desc: 'Memory health dashboard' },\n      { name: 'mem prune',    desc: 'Remove old observations',                                    opts: ['--older-than <d>  Duration (e.g. 90d)'] },\n      { name: 'mem export',   desc: 'Export observations',                                        opts: ['--format <f>  jsonl | md'] },\n      { name: 'mem lint',     desc: 'Health check and auto-repair',                               opts: ['--fix  Auto-fix issues'] },\n      { name: 'mem reembed',  desc: 'Re-embed all observations after model change' },\n      { name: 'mem conflicts list',   desc: 'List pending conflict relations' },\n      { name: 'mem conflicts ignore', args: '<id>', desc: 'Dismiss a pending conflict relation' },\n      { name: 'mem watchmen status',    desc: 'Show watchmen observation counter and last synthesis time' },\n      { name: 'mem watchmen synthesize', desc: 'Run watchmen synthesis: produce brief and/or skill files' },\n      { name: 'mem watchmen reset',     desc: 'Reset the watchmen observation counter to zero' },\n    ],\n    examples: [\n      ['kirograph mem search \"auth decision\"', 'Search for past decisions'],\n      ['kirograph mem store \"use idempotency keys\" --kind decision', 'Store a decision'],\n      ['kirograph mem prune --older-than 90d', 'Remove observations older than 90 days'],\n      ['kirograph mem conflicts list', 'See pending conflict relations'],\n      ['kirograph mem watchmen status', 'Check watchmen counter and last synthesis'],\n      ['kirograph mem watchmen synthesize', 'Trigger watchmen synthesis manually'],\n    ],\n  },\n  {\n    icon: '\uD83D\uDD12', title: 'Security',\n    commands: [\n      { name: 'security', args: '[path]', desc: 'Security overview: vulnerabilities, verdicts, stale-data warnings' },\n      { name: 'vulns',    args: '[path]', desc: 'List vulnerabilities with reachability verdicts and severity',\n        opts: [\n          '--severity <level>  Filter by severity: critical, high, medium, low',\n          '--verdict <verdict>  Filter by verdict: affected, not_affected, under_investigation',\n          '--refresh  Trigger fresh vulnerability enrichment before listing',\n          '--add <cveId>  Manually register a CVE (requires --package and --version)',\n        ],\n      },\n      { name: 'reachability', args: '<target>', desc: 'Check reachability for a CVE or dependency: verdict, call paths, impact' },\n      { name: 'vuln suppress',   args: '<cveId>', desc: 'Mark a CVE as suppressed (false positive or accepted risk)',\n        opts: [\n          '--reason <text>   Reason for suppression',\n          '--expires <date>  Expiry date (e.g. 2026-12-31)',\n        ],\n      },\n      { name: 'vuln unsuppress', args: '<cveId>', desc: 'Remove a suppression' },\n      { name: 'vuln suppressions', desc: 'List all active suppressions', opts: ['--format json  JSON output'] },\n      { name: 'licenses', args: '[path]', desc: 'Show dependency licenses and check against policy (deny/warn lists)',\n        opts: [\n          '--policy             Show only policy violations',\n          '--deny <patterns>    Override deny list (comma-separated SPDX patterns)',\n          '--warn <patterns>    Override warn list (comma-separated SPDX patterns)',\n          '--format json        JSON output',\n        ],\n      },\n      { name: 'vex',       args: '[path]', desc: 'Export a VEX document (Vulnerability Exploitability eXchange)', opts: ['--output <file>  Write to file instead of stdout'] },\n      { name: 'sbom',      args: '[path]', desc: 'Export a Software Bill of Materials',                           opts: ['--output <file>  Write to file instead of stdout'] },\n      { name: 'staleness', args: '[path]', desc: 'Check dependency freshness \u2014 packages behind their latest version',\n        opts: [\n          '--threshold <n>  Show only packages with staleness_score >= n (default: 0.3)',\n          '--refresh        Fetch latest version info from registries before listing',\n          '--format <fmt>   table | json',\n        ],\n      },\n      { name: 'security export',     args: '[path]', desc: 'Generate HTML security dashboard', opts: ['--output <file>  Output path', '--open  Open in browser'] },\n      { name: 'security secrets',    args: '[path]', desc: 'Scan for hardcoded secrets with call-graph blast radius', opts: ['--include-tests  Include test files', '--severity <s>  Filter level', '--format json'] },\n      { name: 'security flows',      args: '[path]', desc: 'SAST-lite: detect dangerous data flows (SQL injection, eval, path traversal, etc.)', opts: ['--type sql|eval|deserialize|path|all', '--format json'] },\n      { name: 'security ci-report',  args: '[path]', desc: 'Generate CI/CD security report (JSON, SARIF for GitHub, or text)', opts: ['--format json|sarif|text', '--fail-on affected|any|critical', '--output <file>'] },\n      { name: 'attack-surface',      args: '[path]', desc: 'Map attack surface: routes \u2192 vulnerable deps with hop count and auth status', opts: ['--limit <n>', '--public-only', '--format json'] },\n      { name: 'supply-chain',        args: '[path]', desc: 'Supply chain health: OpenSSF Scorecard, maintainer count, abandoned packages', opts: ['--threshold critical|high|medium', '--refresh', '--format json'] },\n      { name: 'dep-confusion',       args: '[path]', desc: 'Detect dependency confusion: internal packages that exist in public registries', opts: ['--format json'] },\n      { name: 'remediation',         args: '[path]', desc: 'Remediation SLA tracking: days open, fix available since, overdue alerts', opts: ['--overdue-only', '--format json'] },\n      { name: 'pattern', args: '[pattern]', desc: 'AST structural search: live pattern search or library rule runner',\n        opts: [\n          '--list             Show all bundled SAST rules',\n          '--library <id>    Run a specific library rule',\n          '--lang <l>        Language filter (js, ts, python, go, ...)',\n          '--format json     JSON output',\n        ],\n      },\n    ],\n    examples: [\n      ['kirograph security', 'Overview: dep count, vuln count, verdict breakdown'],\n      ['kirograph security --refresh-staleness', 'Overview including stale dependency count'],\n      ['kirograph vulns', 'List all vulnerabilities with severity and verdict'],\n      ['kirograph vulns --stale', 'Show staleness score alongside each CVE'],\n      ['kirograph vulns --verdict under_investigation', 'Show only vulnerabilities still being investigated'],\n      ['kirograph vulns --severity critical --verdict affected', 'Critical confirmed vulnerabilities'],\n      ['kirograph vulns --refresh', 'Re-query OSV before listing'],\n      ['kirograph staleness', 'Show packages with staleness_score >= 0.3'],\n      ['kirograph staleness --refresh --threshold 0.5', 'Fetch latest versions and show very stale packages'],\n      ['kirograph reachability CVE-2023-12345', 'Check reachability for a specific CVE'],\n      ['kirograph reachability lodash', 'Check reachability for a dependency by package name'],\n      ['kirograph licenses', 'Show all dependency licenses'],\n      ['kirograph licenses --policy', 'Show only license policy violations'],\n      ['kirograph licenses --deny \"GPL-*,AGPL-*\"', 'Block all GPL/AGPL licenses'],\n      ['kirograph vex --output vex.json', 'Export CycloneDX VEX document'],\n      ['kirograph sbom --output sbom.json', 'Export SPDX SBOM'],\n      ['kirograph security export --open', 'Generate and open HTML security dashboard'],\n      ['kirograph security secrets', 'Scan for hardcoded secrets with call-graph blast radius'],\n      ['kirograph security flows', 'Detect dangerous data flows (SQL injection, eval, etc.)'],\n      ['kirograph security ci-report --format sarif --output results.sarif', 'SARIF report for GitHub Security tab'],\n      ['kirograph attack-surface --public-only', 'Show public routes reaching vulnerable deps'],\n      ['kirograph supply-chain --threshold high', 'Show high-risk supply chain findings'],\n      ['kirograph dep-confusion', 'Detect dependency confusion attack vectors'],\n      ['kirograph remediation --overdue-only', 'Show CVEs past their remediation SLA'],\n      ['kirograph vuln suppress CVE-2024-1234 --reason \"not in code path\"', 'Suppress a false positive CVE'],\n      ['kirograph vuln unsuppress CVE-2024-1234', 'Remove a suppression'],\n      ['kirograph vuln suppressions', 'List all active suppressions'],\n      ['kirograph pattern \"eval($X)\"', 'Find all eval() calls'],\n      ['kirograph pattern --list', 'Show all bundled SAST rules'],\n      ['kirograph pattern --library dangerous-eval-js', 'Run the dangerous-eval library rule'],\n    ],\n  },\n  {\n    icon: '\u2699\uFE0F', title: 'Agent',\n    commands: [\n      { name: 'caveman',     args: '[mode]',  desc: 'Communication style (off | lite | full | ultra)' },\n      { name: 'compression', args: '[level]', desc: 'Shell compression level (off | normal | aggressive | ultra)' },\n      { name: 'exec',        args: '<cmd>',   desc: 'Run command with token-optimized output',              opts: ['-l <level>  Compression level', '-t <sec>  Timeout'] },\n      { name: 'gain',        desc: 'Token savings statistics',                                              opts: ['--graph  ASCII chart', '--history  Recent commands', '--daily  Day breakdown'] },\n      { name: 'bench',       desc: 'Run local token-efficiency benchmark across KiroGraph tools',           opts: ['--quiet  Suppress per-tool output'] },\n      { name: 'monitor',     desc: 'Live tail of mcp-calls.jsonl \u2014 watch MCP tool usage in real time',     opts: ['--lines <n>  Initial lines to show'] },\n      { name: 'upgrade',     desc: 'Update KiroGraph to the latest version',                               opts: ['--dry-run  Show what would change without installing'] },\n      { name: 'cost',        args: '[sessionDir]', desc: 'Analyze MCP tool usage and token cost from Claude session transcripts', opts: ['--last <n>  Last N sessions', '--category  Group by tool category'] },\n      { name: 'serve',       desc: 'Start the MCP server',                                                 opts: ['--mcp  Run as stdio MCP', '--path <p>  Project path'] },\n    ],\n    examples: [\n      ['kirograph caveman lite', 'Enable lite caveman mode'],\n      ['kirograph exec git status', 'Run git status with compression'],\n      ['kirograph gain --graph', 'Show token savings graph'],\n      ['kirograph bench', 'Run token-efficiency benchmark'],\n      ['kirograph monitor', 'Watch MCP tool calls live'],\n      ['kirograph cost --last 5', 'Cost breakdown for the last 5 sessions'],\n      ['kirograph upgrade --dry-run', 'Preview available KiroGraph update'],\n    ],\n  },\n];\n\nfunction renderGroup(group: Group, highlightIdx: number, interactive = false): string[] {\n  const lines: string[] = [];\n  const nameWidth = Math.max(...group.commands.map(cmd => (cmd.name + (cmd.args ? ' ' + cmd.args : '')).length)) + 2;\n\n  lines.push('');\n  lines.push(`  ${c.bold}${c.paleLavender}COMMANDS${c.reset}  ${c.dim}\u2191\u2193 select \u00B7 enter to copy \u00B7 q quit${c.reset}`);\n  lines.push('');\n\n  for (let i = 0; i < group.commands.length; i++) {\n    const cmd = group.commands[i]!;\n    const signature = cmd.name + (cmd.args ? ' ' + cmd.args : '');\n    const isHighlighted = i === highlightIdx;\n    const prefix = isHighlighted ? `${c.green}${c.bold}\u276F${c.reset} ` : '  ';\n    const namePart = isHighlighted\n      ? `${c.bold}${c.lavender}${cmd.name}${c.reset}${cmd.args ? ' ' + c.bold + cmd.args + c.reset : ''}`\n      : `${c.lavender}${cmd.name}${c.reset}${cmd.args ? ' ' + c.dim + cmd.args + c.reset : ''}`;\n    const pad = ' '.repeat(Math.max(0, nameWidth - signature.length));\n    lines.push(`${prefix}${namePart}${pad}${c.gray}${cmd.desc}${c.reset}`);\n    // In interactive mode show only the highlighted command's opts\n    if (cmd.opts && (!interactive || isHighlighted)) {\n      for (const opt of cmd.opts) {\n        const [flag, ...rest] = opt.split(/  +/);\n        lines.push(`    ${c.purple}${flag}${c.reset}${rest.length ? '  ' + c.dim + rest.join('  ') + c.reset : ''}`);\n      }\n    }\n  }\n\n  if (!interactive && group.examples.length > 0) {\n    lines.push('');\n    lines.push(`  ${c.bold}${c.paleLavender}EXAMPLES${c.reset}`);\n    lines.push('');\n    for (const [ex, desc] of group.examples) {\n      lines.push(`  ${c.violet}$${c.reset} ${c.lavender}${ex}${c.reset}`);\n      lines.push(`    ${c.dim}${desc}${c.reset}`);\n    }\n  }\n\n  return lines;\n}\n\n\nfunction renderTabs(selectedIdx: number): string {\n  return GROUPS.map((g, i) => {\n    if (i === selectedIdx) {\n      return `${c.bold}${c.violet}${c.underline}${g.icon} ${g.title}${c.reset}`;\n    }\n    return `${c.dim}${g.icon} ${g.title}${c.reset}`;\n  }).join('  ');\n}\n\n/**\n * Interactive tabbed help \u2014 left/right for tabs, up/down for commands, enter to copy.\n */\nexport function printInteractiveHelp(): void {\n  let selectedTab = 0;\n  let selectedCmd = 0;\n\n  function render() {\n    // Move to top-left and clear from cursor to end of screen\n    process.stdout.write('\\x1b[H\\x1b[J');\n\n    const lines: string[] = [];\n    lines.push('');\n    lines.push(`  ${renderTabs(selectedTab)}`);\n    lines.push(`  ${c.dim}\u2190 \u2192 tabs \u00B7 \u2191 \u2193 commands \u00B7 enter to use \u00B7 q quit${c.reset}`);\n    lines.push(...renderGroup(GROUPS[selectedTab]!, selectedCmd, true));\n\n    process.stdout.write(lines.join('\\n') + '\\n');\n  }\n\n  // Enter alternate screen + hide cursor so rendering never scrolls or flickers\n  process.stdout.write('\\x1b[?1049h\\x1b[?25l');\n\n  printBanner();\n  console.log(`\\n${c.bold}${c.paleLavender}USAGE${c.reset}  ${c.lavender}kirograph${c.reset} ${c.gray}<command>${c.reset} ${c.dim}[options]${c.reset}`);\n\n  render();\n\n  // Enter raw mode for interactive navigation\n  const stdin = process.stdin;\n  if (!stdin.isTTY) {\n    // Non-interactive: leave alternate screen and print all groups normally\n    process.stdout.write('\\x1b[?25h\\x1b[?1049l');\n    for (let i = 1; i < GROUPS.length; i++) {\n      const lines = renderGroup(GROUPS[i]!, -1);\n      for (const line of lines) console.log(line);\n    }\n    return;\n  }\n\n  stdin.setRawMode(true);\n  stdin.resume();\n  stdin.setEncoding('utf8');\n\n  function cleanup() {\n    stdin.removeListener('data', onData);\n    stdin.setRawMode(false);\n    stdin.pause();\n    // Leave alternate screen and restore cursor\n    process.stdout.write('\\x1b[?25h\\x1b[?1049l');\n  }\n\n  function onData(key: string) {\n    // Arrow keys and other escape sequences start with \\x1b[\n    if (key.startsWith('\\x1b[')) {\n      if (key === '\\x1b[C') { // right arrow \u2014 next tab\n        selectedTab = (selectedTab + 1) % GROUPS.length;\n        selectedCmd = 0;\n        render();\n      } else if (key === '\\x1b[D') { // left arrow \u2014 prev tab\n        selectedTab = (selectedTab - 1 + GROUPS.length) % GROUPS.length;\n        selectedCmd = 0;\n        render();\n      } else if (key === '\\x1b[B') { // down arrow \u2014 next command\n        const maxCmd = GROUPS[selectedTab]!.commands.length - 1;\n        selectedCmd = Math.min(selectedCmd + 1, maxCmd);\n        render();\n      } else if (key === '\\x1b[A') { // up arrow \u2014 prev command\n        selectedCmd = Math.max(selectedCmd - 1, 0);\n        render();\n      }\n      // Ignore other escape sequences\n      return;\n    }\n\n    if (key === '\\r' || key === '\\n') { // enter \u2014 copy command to terminal\n      cleanup();\n      const cmd = GROUPS[selectedTab]!.commands[selectedCmd]!;\n      const fullCmd = `kirograph ${cmd.name}${cmd.args ? ' ' + cmd.args : ''}`;\n      console.log(`\\n  ${c.green}${c.bold}$${c.reset} ${fullCmd}\\n`);\n      process.exit(0);\n    } else if (key === 'q' || key === '\\x03') { // q, ctrl+c\n      cleanup();\n      console.log();\n      process.exit(0);\n    }\n  }\n\n  stdin.on('data', onData);\n}\n\n/**\n * Non-interactive full help (for piping, --help flag).\n */\nexport function printColoredHelp(): void {\n\n  console.log(`\\n${c.bold}${c.paleLavender}USAGE${c.reset}`);\n  console.log(`  ${c.lavender}kirograph${c.reset} ${c.gray}<command>${c.reset} ${c.dim}[options]${c.reset}\\n`);\n\n  for (const group of GROUPS) {\n    console.log(`${c.bold}${c.paleLavender}${group.icon} ${group.title.toUpperCase()}${c.reset}\\n`);\n    const nameWidth = Math.max(...group.commands.map(cmd => (cmd.name + (cmd.args ? ' ' + cmd.args : '')).length)) + 2;\n    for (const cmd of group.commands) {\n      const signature = cmd.name + (cmd.args ? ' ' + cmd.args : '');\n      const namePart = `${c.lavender}${cmd.name}${c.reset}${cmd.args ? ' ' + c.dim + cmd.args + c.reset : ''}`;\n      const pad = ' '.repeat(Math.max(0, nameWidth - signature.length));\n      console.log(`  ${namePart}${pad}${c.gray}${cmd.desc}${c.reset}`);\n      if (cmd.opts) {\n        for (const opt of cmd.opts) {\n          const [flag, ...rest] = opt.split(/  +/);\n          console.log(`    ${c.purple}${flag}${c.reset}${rest.length ? '  ' + c.dim + rest.join('  ') + c.reset : ''}`);\n        }\n      }\n    }\n    console.log();\n  }\n\n  console.log(`${c.bold}${c.paleLavender}GLOBAL FLAGS${c.reset}\\n`);\n  console.log(`  ${c.purple}-h, --help${c.reset}     ${c.gray}Show this help${c.reset}`);\n  console.log(`  ${c.purple}-V, --version${c.reset}  ${c.gray}Show version number${c.reset}\\n`);\n\n\n  console.log(`${c.bold}${c.paleLavender}EXAMPLES${c.reset}\\n`);\n\n  const exampleGroups: Array<{ title: string; examples: [string, string][] }> = [\n    {\n      title: '\uD83D\uDD27 Setup & indexing',\n      examples: [\n        ['kirograph install',                              'Wire up Kiro MCP + hooks + steering for the current workspace'],\n        ['kirograph install --target claude',              'Wire up Claude Code MCP + project memory'],\n        ['kirograph install --target codex',               'Install Codex project instructions and print MCP config'],\n        ['kirograph init --index',                         'Init and immediately index the project'],\n        ['kirograph hook save',                            'Save workspace hooks to ~/.kirograph/hooks/'],\n        ['kirograph hook import',                          'Import global hooks into .kiro/hooks/'],\n        ['kirograph sync',                                 'Incremental sync of changed files'],\n      ],\n    },\n    {\n      title: '\uD83D\uDD0D Search & exploration',\n      examples: [\n        ['kirograph query useState',                       'Find all symbols named useState'],\n        ['kirograph context \"add dark mode\"',              'Get relevant code context for a task'],\n        ['kirograph files --format grouped',               'Show files grouped by directory'],\n        ['kirograph path LoginController DatabasePool',     'Find how two symbols are connected'],\n        ['kirograph affected src/auth.ts',                 'Find tests affected by a change'],\n        ['git diff --name-only | kirograph affected --stdin', 'Affected tests from a git diff'],\n        ['kirograph export start',                         'Open the interactive graph dashboard in the browser'],\n        ['kirograph export build -o /tmp/graph',           'Export the dashboard to a custom directory'],\n      ],\n    },\n    {\n      title: '\uD83D\uDCCA Graph insights',\n      examples: [\n        ['kirograph hotspots --limit 10',                  'Top 10 most-connected symbols'],\n        ['kirograph surprising',                           'Find unexpected cross-module connections'],\n        ['kirograph dead-code',                            'Find unreferenced unexported symbols'],\n        ['kirograph snapshot save pre-refactor',           'Save a named snapshot before a refactor'],\n        ['kirograph snapshot diff pre-refactor',           'Diff current graph vs the named snapshot'],\n      ],\n    },\n    {\n      title: '\uD83C\uDFDB\uFE0F Architecture',\n      examples: [\n        ['kirograph architecture --packages',              'List all detected packages'],\n        ['kirograph coupling --sort instability',          'Show packages ranked by instability'],\n        ['kirograph package src/auth',                     'Inspect the auth package'],\n      ],\n    },\n    {\n      title: '\uD83D\uDD12 Security',\n      examples: [\n        ['kirograph security',                                        'Overview: dep count, vuln count, verdict breakdown'],\n        ['kirograph security --refresh-staleness',                   'Overview including stale dependency count'],\n        ['kirograph vulns',                                           'List all vulnerabilities'],\n        ['kirograph vulns --stale',                                   'Show staleness score alongside each CVE'],\n        ['kirograph vulns --verdict under_investigation',             'Vulnerabilities still being investigated'],\n        ['kirograph vulns --severity critical --verdict affected',    'Critical confirmed vulnerabilities'],\n        ['kirograph vulns --refresh',                                 'Re-query OSV then list'],\n        ['kirograph staleness',                                       'Show packages with staleness_score >= 0.3'],\n        ['kirograph staleness --refresh --threshold 0.5',            'Fetch latest versions and show very stale packages'],\n        ['kirograph reachability CVE-2023-12345',                     'Check reachability for a specific CVE'],\n        ['kirograph reachability lodash',                             'Check reachability for a dependency by package name'],\n        ['kirograph licenses',                                        'Show all dependency licenses'],\n        ['kirograph licenses --policy',                              'Show only license policy violations'],\n        ['kirograph licenses --deny \"GPL-*,AGPL-*\"',                 'Block all GPL/AGPL licenses'],\n        ['kirograph vex --output vex.json',                          'Export CycloneDX VEX document'],\n        ['kirograph sbom --output sbom.json',                        'Export SPDX SBOM'],\n        ['kirograph vuln suppress CVE-2024-1234 --reason \"not in code path\"', 'Suppress a false positive CVE'],\n        ['kirograph vuln suppress CVE-2024-1234 --expires 2026-12-31', 'Suppress with expiry date'],\n        ['kirograph vuln unsuppress CVE-2024-1234',                  'Remove a suppression'],\n        ['kirograph vuln suppressions',                              'List all active suppressions'],\n        ['kirograph pattern \"eval($X)\"',                             'Find all eval() calls (requires enablePatterns: true)'],\n        ['kirograph pattern --list',                                 'Show all bundled SAST pattern rules'],\n        ['kirograph pattern --library dangerous-eval-js',            'Run a specific library rule'],\n      ],\n    },\n    {\n      title: '\u2699\uFE0F Agent',\n      examples: [\n        ['kirograph caveman full',                         'Enable full caveman mode for the agent'],\n        ['kirograph caveman off',                          'Disable caveman mode'],\n        ['kirograph compression aggressive',              'Set compression to aggressive level'],\n        ['kirograph compression off',                      'Disable compression hook (tool still available)'],\n        ['kirograph exec git status',                      'Run git status with compression'],\n        ['kirograph exec --level ultra npm test',          'Run tests with ultra compression'],\n        ['kirograph exec --raw cargo build',               'Show raw vs compressed comparison'],\n        ['kirograph gain --graph',                         'Show token savings graph'],\n        ['kirograph mem search \"auth decision\"',            'Search memory for past decisions'],\n        ['kirograph mem store \"use idempotency keys\" --kind decision', 'Store a decision'],\n        ['kirograph data list',                             'List all indexed datasets'],\n        ['kirograph data describe tests-fixtures-users',    'Show schema and column profiles'],\n        ['kirograph data query orders --filter status:eq:shipped --limit 10', 'Query rows with filters'],\n        ['kirograph data aggregate orders --group-by region --metric sum:amount', 'Server-side aggregation'],\n        ['kirograph serve --mcp',                          'Start the MCP server'],\n      ],\n    },\n  ];\n\n  for (const eg of exampleGroups) {\n    console.log(`  ${c.dim}${eg.title}${c.reset}`);\n    for (const [ex, desc] of eg.examples) {\n      console.log(`  ${c.violet}$${c.reset} ${c.lavender}${ex}${c.reset}`);\n      console.log(`    ${c.dim}${desc}${c.reset}`);\n    }\n    console.log();\n  }\n}\n\nexport function register(program: Command): void {\n  program.configureHelp({ formatHelp: () => '' });\n  program.addHelpText('afterAll', '');\n  // Disable Commander's built-in --help to prevent process.exit\n  program.helpOption(false);\n}\n"],
+  "mappings": 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   "names": []
 }

package/dist/bin/commands/inheritance-depth.js

@@ -0,0 +1,56 @@
+"use strict";
+var __create = Object.create;
+var __defProp = Object.defineProperty;
+var __getOwnPropDesc = Object.getOwnPropertyDescriptor;
+var __getOwnPropNames = Object.getOwnPropertyNames;
+var __getProtoOf = Object.getPrototypeOf;
+var __hasOwnProp = Object.prototype.hasOwnProperty;
+var __export = (target, all) => {
+  for (var name in all)
+    __defProp(target, name, { get: all[name], enumerable: true });
+};
+var __copyProps = (to, from, except, desc) => {
+  if (from && typeof from === "object" || typeof from === "function") {
+    for (let key of __getOwnPropNames(from))
+      if (!__hasOwnProp.call(to, key) && key !== except)
+        __defProp(to, key, { get: () => from[key], enumerable: !(desc = __getOwnPropDesc(from, key)) || desc.enumerable });
+  }
+  return to;
+};
+var __toESM = (mod, isNodeMode, target) => (target = mod != null ? __create(__getProtoOf(mod)) : {}, __copyProps(
+  // If the importer is in node compatibility mode or this is not an ESM
+  // file that has been converted to a CommonJS file using a Babel-
+  // compatible transform (i.e. "__esModule" has not been set), then set
+  // "default" to the CommonJS "module.exports" for node compatibility.
+  isNodeMode || !mod || !mod.__esModule ? __defProp(target, "default", { value: mod, enumerable: true }) : target,
+  mod
+));
+var __toCommonJS = (mod) => __copyProps(__defProp({}, "__esModule", { value: true }), mod);
+var inheritance_depth_exports = {};
+__export(inheritance_depth_exports, {
+  register: () => register
+});
+module.exports = __toCommonJS(inheritance_depth_exports);
+var path = __toESM(require("path"));
+async function runTool(target, toolName, args) {
+  const KiroGraph = (await Promise.resolve().then(() => require("../../index.js"))).default;
+  const { ToolHandler } = await Promise.resolve().then(() => require("../../mcp/handler.js"));
+  const cg = await KiroGraph.open(target);
+  const handler = new ToolHandler(cg);
+  const result = await handler.handle(toolName, { ...args, projectPath: target });
+  cg.close();
+  const text = result.content.map((c) => c.text).join("");
+  console.log(text);
+}
+function register(program) {
+  program.command("inheritance-depth [projectPath]").description("Find deepest inheritance chains").option("--limit <n>", "Max results", "20").action(async (projectPath, opts) => {
+    const target = path.resolve(projectPath ?? process.cwd());
+    const limit = parseInt(opts.limit) || 20;
+    await runTool(target, "kirograph_inheritance_depth", { limit });
+  });
+}
+// Annotate the CommonJS export names for ESM import in node:
+0 && (module.exports = {
+  register
+});
+//# sourceMappingURL=inheritance-depth.js.map

package/dist/bin/commands/inheritance-depth.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../../../src/bin/commands/inheritance-depth.ts"],
+  "sourcesContent": ["import * as path from 'path';\nimport { Command } from 'commander';\nimport { dim, reset, violet, bold } from '../ui';\n\nasync function runTool(target: string, toolName: string, args: Record<string, unknown>): Promise<void> {\n  const KiroGraph = (await Promise.resolve().then(() => require('../../index.js'))).default;\n  const { ToolHandler } = (await Promise.resolve().then(() => require('../../mcp/handler.js'))) as any;\n  const cg = await KiroGraph.open(target);\n  const handler = new ToolHandler(cg);\n  const result = await handler.handle(toolName, { ...args, projectPath: target });\n  cg.close();\n  const text: string = result.content.map((c: any) => c.text).join('');\n  console.log(text);\n}\n\nexport function register(program: Command): void {\n  program\n    .command('inheritance-depth [projectPath]')\n    .description('Find deepest inheritance chains')\n    .option('--limit <n>', 'Max results', '20')\n    .action(async (projectPath: string | undefined, opts: { limit: string }) => {\n      const target = path.resolve(projectPath ?? process.cwd());\n      const limit = parseInt(opts.limit) || 20;\n      await runTool(target, 'kirograph_inheritance_depth', { limit });\n    });\n}\n"],
+  "mappings": ";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,WAAsB;AAItB,eAAe,QAAQ,QAAgB,UAAkB,MAA8C;AACrG,QAAM,aAAa,MAAM,QAAQ,QAAQ,EAAE,KAAK,MAAM,QAAQ,gBAAgB,CAAC,GAAG;AAClF,QAAM,EAAE,YAAY,IAAK,MAAM,QAAQ,QAAQ,EAAE,KAAK,MAAM,QAAQ,sBAAsB,CAAC;AAC3F,QAAM,KAAK,MAAM,UAAU,KAAK,MAAM;AACtC,QAAM,UAAU,IAAI,YAAY,EAAE;AAClC,QAAM,SAAS,MAAM,QAAQ,OAAO,UAAU,EAAE,GAAG,MAAM,aAAa,OAAO,CAAC;AAC9E,KAAG,MAAM;AACT,QAAM,OAAe,OAAO,QAAQ,IAAI,CAAC,MAAW,EAAE,IAAI,EAAE,KAAK,EAAE;AACnE,UAAQ,IAAI,IAAI;AAClB;AAEO,SAAS,SAAS,SAAwB;AAC/C,UACG,QAAQ,iCAAiC,EACzC,YAAY,iCAAiC,EAC7C,OAAO,eAAe,eAAe,IAAI,EACzC,OAAO,OAAO,aAAiC,SAA4B;AAC1E,UAAM,SAAS,KAAK,QAAQ,eAAe,QAAQ,IAAI,CAAC;AACxD,UAAM,QAAQ,SAAS,KAAK,KAAK,KAAK;AACtC,UAAM,QAAQ,QAAQ,+BAA+B,EAAE,MAAM,CAAC;AAAA,EAChE,CAAC;AACL;",
+  "names": []
+}

package/dist/bin/commands/insert-at.js

@@ -0,0 +1,55 @@
+"use strict";
+var __create = Object.create;
+var __defProp = Object.defineProperty;
+var __getOwnPropDesc = Object.getOwnPropertyDescriptor;
+var __getOwnPropNames = Object.getOwnPropertyNames;
+var __getProtoOf = Object.getPrototypeOf;
+var __hasOwnProp = Object.prototype.hasOwnProperty;
+var __export = (target, all) => {
+  for (var name in all)
+    __defProp(target, name, { get: all[name], enumerable: true });
+};
+var __copyProps = (to, from, except, desc) => {
+  if (from && typeof from === "object" || typeof from === "function") {
+    for (let key of __getOwnPropNames(from))
+      if (!__hasOwnProp.call(to, key) && key !== except)
+        __defProp(to, key, { get: () => from[key], enumerable: !(desc = __getOwnPropDesc(from, key)) || desc.enumerable });
+  }
+  return to;
+};
+var __toESM = (mod, isNodeMode, target) => (target = mod != null ? __create(__getProtoOf(mod)) : {}, __copyProps(
+  // If the importer is in node compatibility mode or this is not an ESM
+  // file that has been converted to a CommonJS file using a Babel-
+  // compatible transform (i.e. "__esModule" has not been set), then set
+  // "default" to the CommonJS "module.exports" for node compatibility.
+  isNodeMode || !mod || !mod.__esModule ? __defProp(target, "default", { value: mod, enumerable: true }) : target,
+  mod
+));
+var __toCommonJS = (mod) => __copyProps(__defProp({}, "__esModule", { value: true }), mod);
+var insert_at_exports = {};
+__export(insert_at_exports, {
+  register: () => register
+});
+module.exports = __toCommonJS(insert_at_exports);
+var path = __toESM(require("path"));
+async function runTool(target, toolName, args) {
+  const KiroGraph = (await Promise.resolve().then(() => require("../../index.js"))).default;
+  const { ToolHandler } = await Promise.resolve().then(() => require("../../mcp/handler.js"));
+  const cg = await KiroGraph.open(target);
+  const handler = new ToolHandler(cg);
+  const result = await handler.handle(toolName, { ...args, projectPath: target });
+  cg.close();
+  const text = result.content.map((c) => c.text).join("");
+  console.log(text);
+}
+function register(program) {
+  program.command("insert-at <file> <anchor> <content> [projectPath]").description("Insert content before or after an anchor string or line number in a file").option("--after", "Insert after anchor instead of before").option("--line", "Treat anchor as line number").action(async (file, anchor, content, projectPath, opts) => {
+    const target = path.resolve(projectPath ?? process.cwd());
+    await runTool(target, "kirograph_insert_at", { file, anchor, content, after: opts.after, line: opts.line });
+  });
+}
+// Annotate the CommonJS export names for ESM import in node:
+0 && (module.exports = {
+  register
+});
+//# sourceMappingURL=insert-at.js.map

package/dist/bin/commands/insert-at.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../../../src/bin/commands/insert-at.ts"],
+  "sourcesContent": ["import * as path from 'path';\nimport { Command } from 'commander';\nimport { dim, reset, violet, bold } from '../ui';\n\nasync function runTool(target: string, toolName: string, args: Record<string, unknown>): Promise<void> {\n  const KiroGraph = (await Promise.resolve().then(() => require('../../index.js'))).default;\n  const { ToolHandler } = (await Promise.resolve().then(() => require('../../mcp/handler.js'))) as any;\n  const cg = await KiroGraph.open(target);\n  const handler = new ToolHandler(cg);\n  const result = await handler.handle(toolName, { ...args, projectPath: target });\n  cg.close();\n  const text: string = result.content.map((c: any) => c.text).join('');\n  console.log(text);\n}\n\nexport function register(program: Command): void {\n  program\n    .command('insert-at <file> <anchor> <content> [projectPath]')\n    .description('Insert content before or after an anchor string or line number in a file')\n    .option('--after', 'Insert after anchor instead of before')\n    .option('--line', 'Treat anchor as line number')\n    .action(async (\n      file: string,\n      anchor: string,\n      content: string,\n      projectPath: string | undefined,\n      opts: { after?: boolean; line?: boolean },\n    ) => {\n      const target = path.resolve(projectPath ?? process.cwd());\n      await runTool(target, 'kirograph_insert_at', { file, anchor, content, after: opts.after, line: opts.line });\n    });\n}\n"],
+  "mappings": ";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,WAAsB;AAItB,eAAe,QAAQ,QAAgB,UAAkB,MAA8C;AACrG,QAAM,aAAa,MAAM,QAAQ,QAAQ,EAAE,KAAK,MAAM,QAAQ,gBAAgB,CAAC,GAAG;AAClF,QAAM,EAAE,YAAY,IAAK,MAAM,QAAQ,QAAQ,EAAE,KAAK,MAAM,QAAQ,sBAAsB,CAAC;AAC3F,QAAM,KAAK,MAAM,UAAU,KAAK,MAAM;AACtC,QAAM,UAAU,IAAI,YAAY,EAAE;AAClC,QAAM,SAAS,MAAM,QAAQ,OAAO,UAAU,EAAE,GAAG,MAAM,aAAa,OAAO,CAAC;AAC9E,KAAG,MAAM;AACT,QAAM,OAAe,OAAO,QAAQ,IAAI,CAAC,MAAW,EAAE,IAAI,EAAE,KAAK,EAAE;AACnE,UAAQ,IAAI,IAAI;AAClB;AAEO,SAAS,SAAS,SAAwB;AAC/C,UACG,QAAQ,mDAAmD,EAC3D,YAAY,0EAA0E,EACtF,OAAO,WAAW,uCAAuC,EACzD,OAAO,UAAU,6BAA6B,EAC9C,OAAO,OACN,MACA,QACA,SACA,aACA,SACG;AACH,UAAM,SAAS,KAAK,QAAQ,eAAe,QAAQ,IAAI,CAAC;AACxD,UAAM,QAAQ,QAAQ,uBAAuB,EAAE,MAAM,QAAQ,SAAS,OAAO,KAAK,OAAO,MAAM,KAAK,KAAK,CAAC;AAAA,EAC5G,CAAC;AACL;",
+  "names": []
+}

package/dist/bin/commands/largest.js

@@ -0,0 +1,56 @@
+"use strict";
+var __create = Object.create;
+var __defProp = Object.defineProperty;
+var __getOwnPropDesc = Object.getOwnPropertyDescriptor;
+var __getOwnPropNames = Object.getOwnPropertyNames;
+var __getProtoOf = Object.getPrototypeOf;
+var __hasOwnProp = Object.prototype.hasOwnProperty;
+var __export = (target, all) => {
+  for (var name in all)
+    __defProp(target, name, { get: all[name], enumerable: true });
+};
+var __copyProps = (to, from, except, desc) => {
+  if (from && typeof from === "object" || typeof from === "function") {
+    for (let key of __getOwnPropNames(from))
+      if (!__hasOwnProp.call(to, key) && key !== except)
+        __defProp(to, key, { get: () => from[key], enumerable: !(desc = __getOwnPropDesc(from, key)) || desc.enumerable });
+  }
+  return to;
+};
+var __toESM = (mod, isNodeMode, target) => (target = mod != null ? __create(__getProtoOf(mod)) : {}, __copyProps(
+  // If the importer is in node compatibility mode or this is not an ESM
+  // file that has been converted to a CommonJS file using a Babel-
+  // compatible transform (i.e. "__esModule" has not been set), then set
+  // "default" to the CommonJS "module.exports" for node compatibility.
+  isNodeMode || !mod || !mod.__esModule ? __defProp(target, "default", { value: mod, enumerable: true }) : target,
+  mod
+));
+var __toCommonJS = (mod) => __copyProps(__defProp({}, "__esModule", { value: true }), mod);
+var largest_exports = {};
+__export(largest_exports, {
+  register: () => register
+});
+module.exports = __toCommonJS(largest_exports);
+var path = __toESM(require("path"));
+async function runTool(target, toolName, args) {
+  const KiroGraph = (await Promise.resolve().then(() => require("../../index.js"))).default;
+  const { ToolHandler } = await Promise.resolve().then(() => require("../../mcp/handler.js"));
+  const cg = await KiroGraph.open(target);
+  const handler = new ToolHandler(cg);
+  const result = await handler.handle(toolName, { ...args, projectPath: target });
+  cg.close();
+  const text = result.content.map((c) => c.text).join("");
+  console.log(text);
+}
+function register(program) {
+  program.command("largest [projectPath]").description("Symbols ranked by lines of code").option("--limit <n>", "Max results", "20").option("--kind <kind>", "Symbol kind filter (function|class|method|etc.)").action(async (projectPath, opts) => {
+    const target = path.resolve(projectPath ?? process.cwd());
+    const limit = parseInt(opts.limit) || 20;
+    await runTool(target, "kirograph_largest", { limit, kind: opts.kind });
+  });
+}
+// Annotate the CommonJS export names for ESM import in node:
+0 && (module.exports = {
+  register
+});
+//# sourceMappingURL=largest.js.map

package/dist/bin/commands/largest.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../../../src/bin/commands/largest.ts"],
+  "sourcesContent": ["import * as path from 'path';\nimport { Command } from 'commander';\nimport { dim, reset, violet, bold } from '../ui';\n\nasync function runTool(target: string, toolName: string, args: Record<string, unknown>): Promise<void> {\n  const KiroGraph = (await Promise.resolve().then(() => require('../../index.js'))).default;\n  const { ToolHandler } = (await Promise.resolve().then(() => require('../../mcp/handler.js'))) as any;\n  const cg = await KiroGraph.open(target);\n  const handler = new ToolHandler(cg);\n  const result = await handler.handle(toolName, { ...args, projectPath: target });\n  cg.close();\n  const text: string = result.content.map((c: any) => c.text).join('');\n  console.log(text);\n}\n\nexport function register(program: Command): void {\n  program\n    .command('largest [projectPath]')\n    .description('Symbols ranked by lines of code')\n    .option('--limit <n>', 'Max results', '20')\n    .option('--kind <kind>', 'Symbol kind filter (function|class|method|etc.)')\n    .action(async (projectPath: string | undefined, opts: { limit: string; kind?: string }) => {\n      const target = path.resolve(projectPath ?? process.cwd());\n      const limit = parseInt(opts.limit) || 20;\n      await runTool(target, 'kirograph_largest', { limit, kind: opts.kind });\n    });\n}\n"],
+  "mappings": ";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,WAAsB;AAItB,eAAe,QAAQ,QAAgB,UAAkB,MAA8C;AACrG,QAAM,aAAa,MAAM,QAAQ,QAAQ,EAAE,KAAK,MAAM,QAAQ,gBAAgB,CAAC,GAAG;AAClF,QAAM,EAAE,YAAY,IAAK,MAAM,QAAQ,QAAQ,EAAE,KAAK,MAAM,QAAQ,sBAAsB,CAAC;AAC3F,QAAM,KAAK,MAAM,UAAU,KAAK,MAAM;AACtC,QAAM,UAAU,IAAI,YAAY,EAAE;AAClC,QAAM,SAAS,MAAM,QAAQ,OAAO,UAAU,EAAE,GAAG,MAAM,aAAa,OAAO,CAAC;AAC9E,KAAG,MAAM;AACT,QAAM,OAAe,OAAO,QAAQ,IAAI,CAAC,MAAW,EAAE,IAAI,EAAE,KAAK,EAAE;AACnE,UAAQ,IAAI,IAAI;AAClB;AAEO,SAAS,SAAS,SAAwB;AAC/C,UACG,QAAQ,uBAAuB,EAC/B,YAAY,iCAAiC,EAC7C,OAAO,eAAe,eAAe,IAAI,EACzC,OAAO,iBAAiB,iDAAiD,EACzE,OAAO,OAAO,aAAiC,SAA2C;AACzF,UAAM,SAAS,KAAK,QAAQ,eAAe,QAAQ,IAAI,CAAC;AACxD,UAAM,QAAQ,SAAS,KAAK,KAAK,KAAK;AACtC,UAAM,QAAQ,QAAQ,qBAAqB,EAAE,OAAO,MAAM,KAAK,KAAK,CAAC;AAAA,EACvE,CAAC;AACL;",
+  "names": []
+}