kirograph 0.23.0 → 0.26.0

package/dist/bin/commands/wiki.js

@@ -0,0 +1,307 @@
+"use strict";
+var __create = Object.create;
+var __defProp = Object.defineProperty;
+var __getOwnPropDesc = Object.getOwnPropertyDescriptor;
+var __getOwnPropNames = Object.getOwnPropertyNames;
+var __getProtoOf = Object.getPrototypeOf;
+var __hasOwnProp = Object.prototype.hasOwnProperty;
+var __export = (target, all) => {
+  for (var name in all)
+    __defProp(target, name, { get: all[name], enumerable: true });
+};
+var __copyProps = (to, from, except, desc) => {
+  if (from && typeof from === "object" || typeof from === "function") {
+    for (let key of __getOwnPropNames(from))
+      if (!__hasOwnProp.call(to, key) && key !== except)
+        __defProp(to, key, { get: () => from[key], enumerable: !(desc = __getOwnPropDesc(from, key)) || desc.enumerable });
+  }
+  return to;
+};
+var __toESM = (mod, isNodeMode, target) => (target = mod != null ? __create(__getProtoOf(mod)) : {}, __copyProps(
+  // If the importer is in node compatibility mode or this is not an ESM
+  // file that has been converted to a CommonJS file using a Babel-
+  // compatible transform (i.e. "__esModule" has not been set), then set
+  // "default" to the CommonJS "module.exports" for node compatibility.
+  isNodeMode || !mod || !mod.__esModule ? __defProp(target, "default", { value: mod, enumerable: true }) : target,
+  mod
+));
+var __toCommonJS = (mod) => __copyProps(__defProp({}, "__esModule", { value: true }), mod);
+var wiki_exports = {};
+__export(wiki_exports, {
+  register: () => register
+});
+module.exports = __toCommonJS(wiki_exports);
+var fs = __toESM(require("fs"));
+var import_ui = require("../ui");
+const yellow = "\x1B[33m";
+async function getWiki(cwd) {
+  const { KiroGraphWiki } = await Promise.resolve().then(() => require("../../wiki/index.js"));
+  const { loadConfig } = await Promise.resolve().then(() => require("../../config.js"));
+  const KiroGraph = (await Promise.resolve().then(() => require("../../index.js"))).default;
+  if (!KiroGraph.isInitialized(cwd)) {
+    console.error("  \u2716 KiroGraph is not initialized. Run `kirograph init` first.");
+    process.exit(1);
+  }
+  const config = await loadConfig(cwd);
+  if (!config.enableWiki) {
+    console.error("  \u2716 Wiki is not enabled. Set enableWiki: true in .kirograph/config.json");
+    process.exit(1);
+  }
+  const cg = await KiroGraph.open(cwd);
+  const db = cg.getDatabase();
+  db.applyWikiSchema();
+  const kirographDir = `${cwd}/.kirograph`;
+  const wiki = new KiroGraphWiki(db.getRawDb(), kirographDir, {
+    autoResolveConflicts: config.wikiAutoResolveConflicts
+  });
+  wiki.initialize();
+  return wiki;
+}
+function readStdinSync() {
+  return fs.readFileSync("/dev/stdin", "utf8");
+}
+function register(program) {
+  const wiki = program.command("wiki").description("LLM-maintained structured wiki (requires enableWiki: true)");
+  wiki.command("init").description("Initialize wiki: create SCHEMA.md and MANIFEST.md in .kirograph/wiki/").action(async () => {
+    const { KiroGraphWiki } = await Promise.resolve().then(() => require("../../wiki/index.js"));
+    const KiroGraph = (await Promise.resolve().then(() => require("../../index.js"))).default;
+    const cwd = process.cwd();
+    if (!KiroGraph.isInitialized(cwd)) {
+      console.error("  \u2716 KiroGraph is not initialized. Run `kirograph init` first.");
+      process.exit(1);
+    }
+    const { loadConfig } = await Promise.resolve().then(() => require("../../config.js"));
+    const config = await loadConfig(cwd);
+    const cg = await KiroGraph.open(cwd);
+    const db = cg.getDatabase();
+    db.applyWikiSchema();
+    const w = new KiroGraphWiki(db.getRawDb(), `${cwd}/.kirograph`, {
+      autoResolveConflicts: config.wikiAutoResolveConflicts
+    });
+    w.initWiki();
+    console.log(`
+  ${import_ui.green}\u2713${import_ui.reset}  Wiki initialized in ${import_ui.dim}.kirograph/wiki/${import_ui.reset}`);
+    console.log(`  ${import_ui.dim}Edit .kirograph/wiki/SCHEMA.md to customize naming and page structure.${import_ui.reset}
+`);
+  });
+  wiki.command("ingest [source]").description("Print the ingest prompt for the LLM (reads file or stdin)").option("--name <name>", "Source name to include in the prompt").action(async (source, opts) => {
+    const cwd = process.cwd();
+    const w = await getWiki(cwd);
+    let content;
+    let sourceName = opts.name ?? source ?? "source";
+    if (source && fs.existsSync(source)) {
+      content = fs.readFileSync(source, "utf8");
+      sourceName = opts.name ?? source;
+    } else if (source) {
+      content = source;
+    } else {
+      content = readStdinSync();
+    }
+    const prompt = w.getIngestPrompt(content, sourceName);
+    console.log(`
+  ${(0, import_ui.section)("Wiki Ingest Prompt")} ${import_ui.dim}(pass to LLM, then run wiki apply-diff)${import_ui.reset}
+`);
+    console.log(prompt);
+    console.log();
+  });
+  wiki.command("apply-diff [diff]").description("Apply a WIKI_DIFF string to the wiki (reads file or stdin)").action(async (diff) => {
+    const cwd = process.cwd();
+    const w = await getWiki(cwd);
+    let rawDiff;
+    if (diff && fs.existsSync(diff)) {
+      rawDiff = fs.readFileSync(diff, "utf8");
+    } else if (diff) {
+      rawDiff = diff;
+    } else {
+      rawDiff = readStdinSync();
+    }
+    const result = w.applyDiff(rawDiff);
+    console.log(`
+  ${import_ui.green}\u2713${import_ui.reset}  Wiki diff applied
+`);
+    if (result.created.length) {
+      console.log(`  ${import_ui.violet}Created:${import_ui.reset}  ${result.created.join(", ")}`);
+    }
+    if (result.updated.length) {
+      console.log(`  ${import_ui.violet}Updated:${import_ui.reset}  ${result.updated.join(", ")}`);
+    }
+    if (result.conflictsResolved.length) {
+      console.log(`  ${import_ui.green}Conflicts resolved:${import_ui.reset}  ${result.conflictsResolved.join(", ")}`);
+    }
+    if (result.conflictsPending.length) {
+      console.log(`
+  ${yellow}\u26A1 Conflicts pending (${result.conflictsPending.length}):${import_ui.reset}`);
+      for (const c of result.conflictsPending) {
+        console.log(`  ${import_ui.dim}  ${c.page} \xA7${c.section}${import_ui.reset}`);
+        console.log(`    existing: "${c.existing}"`);
+        console.log(`    incoming: "${c.incoming}" (source: ${c.source})`);
+      }
+    }
+    console.log();
+  });
+  wiki.command("search <query>").description("Full-text search over wiki pages").option("--limit <n>", "Max results", "5").option("--format <fmt>", "Output format: text, json", "text").action(async (query, opts) => {
+    const cwd = process.cwd();
+    const w = await getWiki(cwd);
+    const results = w.search(query, parseInt(opts.limit));
+    if (opts.format === "json") {
+      console.log(JSON.stringify(results.map((r) => ({
+        slug: r.page.slug,
+        title: r.page.title,
+        score: r.score,
+        updatedAt: r.page.updatedAt
+      })), null, 2));
+      return;
+    }
+    if (results.length === 0) {
+      console.log(`
+  ${import_ui.dim}No wiki pages found for "${query}"${import_ui.reset}
+`);
+      return;
+    }
+    console.log(`
+  ${(0, import_ui.section)("Wiki Search:")} ${import_ui.violet}${import_ui.bold}${query}${import_ui.reset}
+`);
+    for (const { page, score } of results) {
+      console.log(`  ${import_ui.violet}[${page.slug}]${import_ui.reset} ${import_ui.bold}${page.title}${import_ui.reset}  ${import_ui.dim}score: ${score.toFixed(3)}${import_ui.reset}`);
+      const preview = page.content.split("\n").find((l) => l.trim() && !l.startsWith("#"));
+      if (preview) console.log(`  ${import_ui.dim}${preview.trim().slice(0, 120)}${import_ui.reset}`);
+      console.log();
+    }
+  });
+  wiki.command("page <slug>").description("Print the full content of a wiki page").action(async (slug) => {
+    const cwd = process.cwd();
+    const w = await getWiki(cwd);
+    const page = w.getPage(slug);
+    if (!page) {
+      console.error(`  \u2716 Wiki page "${slug}" not found. Run \`kirograph wiki list\` to see available pages.`);
+      process.exit(1);
+    }
+    console.log();
+    console.log(page.content);
+  });
+  wiki.command("list").description("List all wiki pages").option("--format <fmt>", "Output format: text, json", "text").action(async (opts) => {
+    const cwd = process.cwd();
+    const w = await getWiki(cwd);
+    const pages = w.listPages();
+    if (opts.format === "json") {
+      console.log(JSON.stringify(pages.map((p) => ({
+        slug: p.slug,
+        title: p.title,
+        sourceCount: p.sourceCount,
+        updatedAt: p.updatedAt
+      })), null, 2));
+      return;
+    }
+    const stats = w.getStats();
+    console.log(`
+  ${(0, import_ui.section)("Wiki")} ${import_ui.dim}${stats.pageCount} page(s)${import_ui.reset}
+`);
+    if (pages.length === 0) {
+      console.log(`  ${import_ui.dim}No pages yet. Run \`kirograph wiki ingest\` to add pages.${import_ui.reset}
+`);
+      return;
+    }
+    for (const p of pages) {
+      const date = new Date(p.updatedAt).toISOString().slice(0, 10);
+      console.log(`  ${import_ui.violet}${p.slug.padEnd(32)}${import_ui.reset} ${p.title}  ${import_ui.dim}(${p.sourceCount} src, ${date})${import_ui.reset}`);
+    }
+    console.log();
+  });
+  wiki.command("lint").description("Health check the wiki for issues").action(async () => {
+    const cwd = process.cwd();
+    const w = await getWiki(cwd);
+    const issues = w.lint();
+    if (issues.length === 0) {
+      console.log(`
+  ${import_ui.green}\u2713${import_ui.reset}  Wiki lint passed \u2014 no issues found.
+`);
+      return;
+    }
+    console.log(`
+  ${(0, import_ui.section)("Wiki Lint")} ${yellow}${issues.length} issue(s)${import_ui.reset}
+`);
+    for (const issue of issues) {
+      const icon = issue.kind === "contradiction" ? "\u26A1" : issue.kind === "orphan" ? "\u25CB" : issue.kind === "broken_link" ? "\u{1F517}" : "\u26A0";
+      console.log(`  ${icon} ${import_ui.dim}[${issue.kind}]${import_ui.reset} ${import_ui.violet}${issue.slug}${import_ui.reset}`);
+      console.log(`    ${issue.detail}`);
+      console.log();
+    }
+  });
+  wiki.command("reindex").description("Rebuild SQLite index from .kirograph/wiki/*.md files").action(async () => {
+    const cwd = process.cwd();
+    const w = await getWiki(cwd);
+    const count = w.reindex();
+    console.log(`
+  ${import_ui.green}\u2713${import_ui.reset}  Reindexed ${import_ui.bold}${count}${import_ui.reset} wiki page(s)
+`);
+  });
+  wiki.command("status").description("Wiki subsystem stats").action(async () => {
+    const cwd = process.cwd();
+    const w = await getWiki(cwd);
+    const stats = w.getStats();
+    const oldest = stats.oldestPage ? new Date(stats.oldestPage).toISOString().slice(0, 10) : "n/a";
+    const newest = stats.newestPage ? new Date(stats.newestPage).toISOString().slice(0, 10) : "n/a";
+    console.log(`
+  ${(0, import_ui.section)("Wiki Status")}
+`);
+    console.log(`  Pages:          ${import_ui.bold}${stats.pageCount}${import_ui.reset}`);
+    console.log(`  Total sources:  ${import_ui.bold}${stats.totalSources}${import_ui.reset}`);
+    console.log(`  Oldest page:    ${import_ui.dim}${oldest}${import_ui.reset}`);
+    console.log(`  Newest page:    ${import_ui.dim}${newest}${import_ui.reset}`);
+    console.log(`  Wiki dir:       ${import_ui.dim}.kirograph/wiki/${import_ui.reset}
+`);
+  });
+  wiki.command("synthesize").description("Run local-model wiki synthesis: process the pending source queue (wikiSynthesisMode: local)").option("--quiet", "suppress progress output").action(async (opts) => {
+    const { KiroGraphWiki } = await Promise.resolve().then(() => require("../../wiki/index.js"));
+    const { loadConfig } = await Promise.resolve().then(() => require("../../config.js"));
+    const KiroGraph = (await Promise.resolve().then(() => require("../../index.js"))).default;
+    const cwd = process.cwd();
+    if (!KiroGraph.isInitialized(cwd)) {
+      console.error("  \u2716 KiroGraph is not initialized. Run `kirograph init` first.");
+      process.exit(1);
+    }
+    const config = await loadConfig(cwd);
+    if (!config.enableWiki) {
+      console.error("  \u2716 Wiki is not enabled.");
+      process.exit(1);
+    }
+    if (config.wikiSynthesisMode !== "local") {
+      console.error('  \u2716 wikiSynthesisMode is not "local". This command is for local-model synthesis only.');
+      process.exit(1);
+    }
+    const cg = await KiroGraph.open(cwd);
+    const db = cg.getDatabase();
+    db.applyWikiSchema();
+    const w = new KiroGraphWiki(db.getRawDb(), `${cwd}/.kirograph`, {
+      autoResolveConflicts: config.wikiAutoResolveConflicts
+    });
+    w.initialize();
+    const queueCount = w.getQueueCount();
+    if (queueCount === 0) {
+      if (!opts.quiet) console.log(`
+  ${import_ui.dim}Wiki queue is empty \u2014 nothing to synthesize.${import_ui.reset}
+`);
+      process.exit(0);
+    }
+    if (!opts.quiet) console.log(`
+  ${yellow}\u27F3${import_ui.reset}  Synthesizing ${import_ui.bold}${queueCount}${import_ui.reset} queued source(s) with local model...
+`);
+    const result = await w.synthesize(config.wikiLocalModel, !!opts.quiet);
+    if (!opts.quiet) {
+      if (result.processed > 0) {
+        console.log(`  ${import_ui.green}\u2713${import_ui.reset}  Processed: ${import_ui.bold}${result.processed}${import_ui.reset} source(s)`);
+        if (result.created.length) console.log(`  ${import_ui.green}\u2713${import_ui.reset}  Created:   ${result.created.join(", ")}`);
+        if (result.updated.length) console.log(`  ${import_ui.green}\u2713${import_ui.reset}  Updated:   ${result.updated.join(", ")}`);
+      }
+      if (result.errors.length) {
+        for (const e of result.errors) console.error(`  ${yellow}\u26A0${import_ui.reset}  ${e}`);
+      }
+      console.log("");
+    }
+  });
+}
+// Annotate the CommonJS export names for ESM import in node:
+0 && (module.exports = {
+  register
+});
+//# sourceMappingURL=wiki.js.map

package/dist/bin/commands/wiki.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../../../src/bin/commands/wiki.ts"],
+  "sourcesContent": ["/**\n * KiroGraph Wiki CLI\n *\n * kirograph wiki init\n * kirograph wiki ingest [source-file]\n * kirograph wiki apply-diff [diff-file]\n * kirograph wiki search <query>\n * kirograph wiki page <slug>\n * kirograph wiki list\n * kirograph wiki lint\n * kirograph wiki reindex\n * kirograph wiki status\n */\n\nimport { Command } from 'commander';\nimport * as fs from 'fs';\nimport { dim, reset, violet, bold, section, green } from '../ui';\n\nconst yellow = '\\x1b[33m';\n\nasync function getWiki(cwd: string) {\n  const { KiroGraphWiki } = await Promise.resolve().then(() => require('../../wiki/index.js'));\n  const { loadConfig } = await Promise.resolve().then(() => require('../../config.js'));\n  const KiroGraph = (await Promise.resolve().then(() => require('../../index.js'))).default;\n\n  if (!KiroGraph.isInitialized(cwd)) {\n    console.error('  \u2716 KiroGraph is not initialized. Run `kirograph init` first.');\n    process.exit(1);\n  }\n  const config = await loadConfig(cwd);\n  if (!config.enableWiki) {\n    console.error('  \u2716 Wiki is not enabled. Set enableWiki: true in .kirograph/config.json');\n    process.exit(1);\n  }\n\n  const cg = await KiroGraph.open(cwd);\n  const db = cg.getDatabase();\n  db.applyWikiSchema();\n\n  const kirographDir = `${cwd}/.kirograph`;\n  const wiki = new KiroGraphWiki(db.getRawDb(), kirographDir, {\n    autoResolveConflicts: config.wikiAutoResolveConflicts,\n  });\n  wiki.initialize();\n  return wiki;\n}\n\nfunction readStdinSync(): string {\n  return fs.readFileSync('/dev/stdin', 'utf8');\n}\n\nexport function register(program: Command): void {\n  const wiki = program\n    .command('wiki')\n    .description('LLM-maintained structured wiki (requires enableWiki: true)');\n\n  // \u2500\u2500 init \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('init')\n    .description('Initialize wiki: create SCHEMA.md and MANIFEST.md in .kirograph/wiki/')\n    .action(async () => {\n      const { KiroGraphWiki } = await Promise.resolve().then(() => require('../../wiki/index.js'));\n      const KiroGraph = (await Promise.resolve().then(() => require('../../index.js'))).default;\n      const cwd = process.cwd();\n      if (!KiroGraph.isInitialized(cwd)) {\n        console.error('  \u2716 KiroGraph is not initialized. Run `kirograph init` first.');\n        process.exit(1);\n      }\n      const { loadConfig } = await Promise.resolve().then(() => require('../../config.js'));\n      const config = await loadConfig(cwd);\n      const cg = await KiroGraph.open(cwd);\n      const db = cg.getDatabase();\n      db.applyWikiSchema();\n      const w = new KiroGraphWiki(db.getRawDb(), `${cwd}/.kirograph`, {\n        autoResolveConflicts: config.wikiAutoResolveConflicts,\n      });\n      w.initWiki();\n      console.log(`\\n  ${green}\u2713${reset}  Wiki initialized in ${dim}.kirograph/wiki/${reset}`);\n      console.log(`  ${dim}Edit .kirograph/wiki/SCHEMA.md to customize naming and page structure.${reset}\\n`);\n    });\n\n  // \u2500\u2500 ingest \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('ingest [source]')\n    .description('Print the ingest prompt for the LLM (reads file or stdin)')\n    .option('--name <name>', 'Source name to include in the prompt')\n    .action(async (source: string | undefined, opts: { name?: string }) => {\n      const cwd = process.cwd();\n      const w = await getWiki(cwd);\n\n      let content: string;\n      let sourceName = opts.name ?? source ?? 'source';\n\n      if (source && fs.existsSync(source)) {\n        content = fs.readFileSync(source, 'utf8');\n        sourceName = opts.name ?? source;\n      } else if (source) {\n        content = source;\n      } else {\n        content = readStdinSync();\n      }\n\n      const prompt = w.getIngestPrompt(content, sourceName);\n      console.log(`\\n  ${section('Wiki Ingest Prompt')} ${dim}(pass to LLM, then run wiki apply-diff)${reset}\\n`);\n      console.log(prompt);\n      console.log();\n    });\n\n  // \u2500\u2500 apply-diff \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('apply-diff [diff]')\n    .description('Apply a WIKI_DIFF string to the wiki (reads file or stdin)')\n    .action(async (diff: string | undefined) => {\n      const cwd = process.cwd();\n      const w = await getWiki(cwd);\n\n      let rawDiff: string;\n      if (diff && fs.existsSync(diff)) {\n        rawDiff = fs.readFileSync(diff, 'utf8');\n      } else if (diff) {\n        rawDiff = diff;\n      } else {\n        rawDiff = readStdinSync();\n      }\n\n      const result = w.applyDiff(rawDiff);\n\n      console.log(`\\n  ${green}\u2713${reset}  Wiki diff applied\\n`);\n      if (result.created.length) {\n        console.log(`  ${violet}Created:${reset}  ${result.created.join(', ')}`);\n      }\n      if (result.updated.length) {\n        console.log(`  ${violet}Updated:${reset}  ${result.updated.join(', ')}`);\n      }\n      if (result.conflictsResolved.length) {\n        console.log(`  ${green}Conflicts resolved:${reset}  ${result.conflictsResolved.join(', ')}`);\n      }\n      if (result.conflictsPending.length) {\n        console.log(`\\n  ${yellow}\u26A1 Conflicts pending (${result.conflictsPending.length}):${reset}`);\n        for (const c of result.conflictsPending) {\n          console.log(`  ${dim}  ${c.page} \u00A7${c.section}${reset}`);\n          console.log(`    existing: \"${c.existing}\"`);\n          console.log(`    incoming: \"${c.incoming}\" (source: ${c.source})`);\n        }\n      }\n      console.log();\n    });\n\n  // \u2500\u2500 search \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('search <query>')\n    .description('Full-text search over wiki pages')\n    .option('--limit <n>', 'Max results', '5')\n    .option('--format <fmt>', 'Output format: text, json', 'text')\n    .action(async (query: string, opts: { limit: string; format: string }) => {\n      const cwd = process.cwd();\n      const w = await getWiki(cwd);\n      const results = w.search(query, parseInt(opts.limit));\n\n      if (opts.format === 'json') {\n        console.log(JSON.stringify(results.map(r => ({\n          slug: r.page.slug,\n          title: r.page.title,\n          score: r.score,\n          updatedAt: r.page.updatedAt,\n        })), null, 2));\n        return;\n      }\n\n      if (results.length === 0) {\n        console.log(`\\n  ${dim}No wiki pages found for \"${query}\"${reset}\\n`);\n        return;\n      }\n\n      console.log(`\\n  ${section('Wiki Search:')} ${violet}${bold}${query}${reset}\\n`);\n      for (const { page, score } of results) {\n        console.log(`  ${violet}[${page.slug}]${reset} ${bold}${page.title}${reset}  ${dim}score: ${score.toFixed(3)}${reset}`);\n        const preview = page.content.split('\\n').find(l => l.trim() && !l.startsWith('#'));\n        if (preview) console.log(`  ${dim}${preview.trim().slice(0, 120)}${reset}`);\n        console.log();\n      }\n    });\n\n  // \u2500\u2500 page \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('page <slug>')\n    .description('Print the full content of a wiki page')\n    .action(async (slug: string) => {\n      const cwd = process.cwd();\n      const w = await getWiki(cwd);\n      const page = w.getPage(slug);\n      if (!page) {\n        console.error(`  \u2716 Wiki page \"${slug}\" not found. Run \\`kirograph wiki list\\` to see available pages.`);\n        process.exit(1);\n      }\n      console.log();\n      console.log(page.content);\n    });\n\n  // \u2500\u2500 list \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('list')\n    .description('List all wiki pages')\n    .option('--format <fmt>', 'Output format: text, json', 'text')\n    .action(async (opts: { format: string }) => {\n      const cwd = process.cwd();\n      const w = await getWiki(cwd);\n      const pages = w.listPages();\n\n      if (opts.format === 'json') {\n        console.log(JSON.stringify(pages.map(p => ({\n          slug: p.slug,\n          title: p.title,\n          sourceCount: p.sourceCount,\n          updatedAt: p.updatedAt,\n        })), null, 2));\n        return;\n      }\n\n      const stats = w.getStats();\n      console.log(`\\n  ${section('Wiki')} ${dim}${stats.pageCount} page(s)${reset}\\n`);\n      if (pages.length === 0) {\n        console.log(`  ${dim}No pages yet. Run \\`kirograph wiki ingest\\` to add pages.${reset}\\n`);\n        return;\n      }\n      for (const p of pages) {\n        const date = new Date(p.updatedAt).toISOString().slice(0, 10);\n        console.log(`  ${violet}${p.slug.padEnd(32)}${reset} ${p.title}  ${dim}(${p.sourceCount} src, ${date})${reset}`);\n      }\n      console.log();\n    });\n\n  // \u2500\u2500 lint \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('lint')\n    .description('Health check the wiki for issues')\n    .action(async () => {\n      const cwd = process.cwd();\n      const w = await getWiki(cwd);\n      const issues = w.lint();\n\n      if (issues.length === 0) {\n        console.log(`\\n  ${green}\u2713${reset}  Wiki lint passed \u2014 no issues found.\\n`);\n        return;\n      }\n\n      console.log(`\\n  ${section('Wiki Lint')} ${yellow}${issues.length} issue(s)${reset}\\n`);\n      for (const issue of issues) {\n        const icon = issue.kind === 'contradiction' ? '\u26A1' : issue.kind === 'orphan' ? '\u25CB' : issue.kind === 'broken_link' ? '\uD83D\uDD17' : '\u26A0';\n        console.log(`  ${icon} ${dim}[${issue.kind}]${reset} ${violet}${issue.slug}${reset}`);\n        console.log(`    ${issue.detail}`);\n        console.log();\n      }\n    });\n\n  // \u2500\u2500 reindex \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('reindex')\n    .description('Rebuild SQLite index from .kirograph/wiki/*.md files')\n    .action(async () => {\n      const cwd = process.cwd();\n      const w = await getWiki(cwd);\n      const count = w.reindex();\n      console.log(`\\n  ${green}\u2713${reset}  Reindexed ${bold}${count}${reset} wiki page(s)\\n`);\n    });\n\n  // \u2500\u2500 status \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('status')\n    .description('Wiki subsystem stats')\n    .action(async () => {\n      const cwd = process.cwd();\n      const w = await getWiki(cwd);\n      const stats = w.getStats();\n      const oldest = stats.oldestPage ? new Date(stats.oldestPage).toISOString().slice(0, 10) : 'n/a';\n      const newest = stats.newestPage ? new Date(stats.newestPage).toISOString().slice(0, 10) : 'n/a';\n      console.log(`\\n  ${section('Wiki Status')}\\n`);\n      console.log(`  Pages:          ${bold}${stats.pageCount}${reset}`);\n      console.log(`  Total sources:  ${bold}${stats.totalSources}${reset}`);\n      console.log(`  Oldest page:    ${dim}${oldest}${reset}`);\n      console.log(`  Newest page:    ${dim}${newest}${reset}`);\n      console.log(`  Wiki dir:       ${dim}.kirograph/wiki/${reset}\\n`);\n    });\n\n  // \u2500\u2500 synthesize (local model) \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  wiki\n    .command('synthesize')\n    .description('Run local-model wiki synthesis: process the pending source queue (wikiSynthesisMode: local)')\n    .option('--quiet', 'suppress progress output')\n    .action(async (opts) => {\n      const { KiroGraphWiki } = await Promise.resolve().then(() => require('../../wiki/index.js'));\n      const { loadConfig } = await Promise.resolve().then(() => require('../../config.js'));\n      const KiroGraph = (await Promise.resolve().then(() => require('../../index.js'))).default;\n      const cwd = process.cwd();\n\n      if (!KiroGraph.isInitialized(cwd)) {\n        console.error('  \u2716 KiroGraph is not initialized. Run `kirograph init` first.');\n        process.exit(1);\n      }\n      const config = await loadConfig(cwd);\n      if (!config.enableWiki) {\n        console.error('  \u2716 Wiki is not enabled.');\n        process.exit(1);\n      }\n      if (config.wikiSynthesisMode !== 'local') {\n        console.error('  \u2716 wikiSynthesisMode is not \"local\". This command is for local-model synthesis only.');\n        process.exit(1);\n      }\n\n      const cg = await KiroGraph.open(cwd);\n      const db = cg.getDatabase();\n      db.applyWikiSchema();\n      const w = new KiroGraphWiki(db.getRawDb(), `${cwd}/.kirograph`, {\n        autoResolveConflicts: config.wikiAutoResolveConflicts,\n      });\n      w.initialize();\n\n      const queueCount = w.getQueueCount();\n      if (queueCount === 0) {\n        if (!opts.quiet) console.log(`\\n  ${dim}Wiki queue is empty \u2014 nothing to synthesize.${reset}\\n`);\n        process.exit(0);\n      }\n\n      if (!opts.quiet) console.log(`\\n  ${yellow}\u27F3${reset}  Synthesizing ${bold}${queueCount}${reset} queued source(s) with local model...\\n`);\n\n      const result = await w.synthesize(config.wikiLocalModel, !!opts.quiet);\n\n      if (!opts.quiet) {\n        if (result.processed > 0) {\n          console.log(`  ${green}\u2713${reset}  Processed: ${bold}${result.processed}${reset} source(s)`);\n          if (result.created.length) console.log(`  ${green}\u2713${reset}  Created:   ${result.created.join(', ')}`);\n          if (result.updated.length) console.log(`  ${green}\u2713${reset}  Updated:   ${result.updated.join(', ')}`);\n        }\n        if (result.errors.length) {\n          for (const e of result.errors) console.error(`  ${yellow}\u26A0${reset}  ${e}`);\n        }\n        console.log('');\n      }\n    });\n}\n"],
+  "mappings": 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+  "names": []
+}

package/dist/bin/installer/common.js

@@ -37,6 +37,7 @@ __export(common_exports, {
   appendImportLine: () => appendImportLine,
   buildInstructionOpts: () => buildInstructionOpts,
   ensureDir: () => ensureDir,
+  overwriteMcpServersConfig: () => overwriteMcpServersConfig,
   printMcpCommand: () => printMcpCommand,
   printMcpSetup: () => printMcpSetup,
   readJson: () => readJson,
@@ -81,6 +82,13 @@ function writeMcpServersConfig(configPath, serverConfig) {
   writeJson(configPath, existing);
   return true;
 }
+function overwriteMcpServersConfig(configPath, serverConfig) {
+  ensureDir(path.dirname(configPath));
+  const existing = readJson(configPath);
+  existing.mcpServers = existing.mcpServers ?? {};
+  existing.mcpServers[KIROGRAPH_SERVER_NAME] = serverConfig;
+  writeJson(configPath, existing);
+}
 function removeMcpServersConfig(configPath) {
   if (!fs.existsSync(configPath)) return false;
   const existing = readJson(configPath);
@@ -189,6 +197,7 @@ function printMcpCommand(command) {
   appendImportLine,
   buildInstructionOpts,
   ensureDir,
+  overwriteMcpServersConfig,
   printMcpCommand,
   printMcpSetup,
   readJson,

package/dist/bin/installer/common.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../../src/bin/installer/common.ts"],
-  "sourcesContent": ["import * as fs from 'fs';\nimport * as path from 'path';\nimport { KIROGRAPH_TOOL_NAMES } from '../../mcp/tool-names';\nimport type { InstructionOptions } from './instructions';\nimport type { CavemanMode } from './caveman';\n\nexport type InstallTarget = 'kiro' | 'claude' | 'codex' | 'cursor' | 'antigravity' | 'opencode' | 'windsurf' | 'cline' | 'copilot' | 'copilot-cli' | 'junie' | 'gemini-cli' | 'continue' | 'roo' | 'warp' | 'aider' | 'trae' | 'augment' | 'kilo' | 'amp' | 'devin' | 'replit' | 'goose' | 'openhands' | 'tabnine' | 'mistral-vibe' | 'ibm-bob' | 'crush' | 'droid-factory' | 'forgecode' | 'iflow' | 'qwen' | 'rovo' | 'qoder';\n\nexport const KIROGRAPH_SERVER_NAME = 'kirograph';\nexport const KIROGRAPH_COMMAND = 'kirograph';\nexport const KIROGRAPH_MCP_ARGS = ['serve', '--mcp'];\nexport const KIROGRAPH_SYNC_CMD = 'kirograph sync-if-dirty --quiet 2>/dev/null || true';\nexport const KIROGRAPH_TOOLS = KIROGRAPH_TOOL_NAMES;\nexport const KIROGRAPH_SCOPED_TOOLS = KIROGRAPH_TOOL_NAMES.map(name => `@kirograph/${name}`);\n\nexport function ensureDir(p: string): void {\n  fs.mkdirSync(p, { recursive: true });\n}\n\nexport function readJson(p: string): any {\n  try { return JSON.parse(fs.readFileSync(p, 'utf8')); } catch { return {}; }\n}\n\nexport function writeJson(p: string, data: unknown): void {\n  fs.writeFileSync(p, JSON.stringify(data, null, 2) + '\\n');\n}\n\n/**\n * Write MCP server config to a JSON file under the mcpServers key.\n * Returns true if the config was written, false if already configured (idempotent).\n */\nexport function writeMcpServersConfig(configPath: string, serverConfig: object): boolean {\n  ensureDir(path.dirname(configPath));\n  const existing = readJson(configPath);\n  existing.mcpServers = existing.mcpServers ?? {};\n  if (existing.mcpServers[KIROGRAPH_SERVER_NAME]) {\n    return false; // Already configured\n  }\n  existing.mcpServers[KIROGRAPH_SERVER_NAME] = serverConfig;\n  writeJson(configPath, existing);\n  return true;\n}\n\nexport function removeMcpServersConfig(configPath: string): boolean {\n  if (!fs.existsSync(configPath)) return false;\n  const existing = readJson(configPath);\n  if (!existing.mcpServers?.[KIROGRAPH_SERVER_NAME]) return false;\n  delete existing.mcpServers[KIROGRAPH_SERVER_NAME];\n  writeJson(configPath, existing);\n  return true;\n}\n\nexport function appendImportLine(filePath: string, line: string, heading: string): boolean {\n  const existing = fs.existsSync(filePath) ? fs.readFileSync(filePath, 'utf8') : '';\n  if (existing.includes(line)) return false;\n\n  const prefix = existing.length > 0 && !existing.endsWith('\\n') ? '\\n' : '';\n  const separator = existing.trim().length > 0 ? 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'\\n' : '';\n  const separator = existing.trim().length > 0 ? '\\n' : '';\n  fs.writeFileSync(filePath, existing + prefix + separator + block + '\\n');\n  return true;\n}\n\nexport function removeGeneratedBlock(filePath: string, blockId: string): boolean {\n  if (!fs.existsSync(filePath)) return false;\n  const start = `<!-- kirograph:${blockId}:start -->`;\n  const end = `<!-- kirograph:${blockId}:end -->`;\n  const original = fs.readFileSync(filePath, 'utf8');\n  const pattern = new RegExp(`\\\\n?${escapeRegExp(start)}[\\\\s\\\\S]*?${escapeRegExp(end)}\\\\n?`);\n  const next = original.replace(pattern, '\\n').replace(/\\n{3,}/g, '\\n\\n');\n  if (next === original) return false;\n  fs.writeFileSync(filePath, next.endsWith('\\n') ? next : next + '\\n');\n  return true;\n}\n\nfunction escapeRegExp(s: string): string {\n  return s.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&');\n}\n\n/**\n * Build InstructionOptions from the installLate parameters.\n * Used by all targets to pass full feature config to buildAgentInstructions.\n */\nexport function buildInstructionOpts(\n  cavemanMode?: CavemanMode | 'off',\n  shellCompressionLevel?: string,\n  enableMemory?: boolean,\n  hasHooks?: boolean,\n  enableDocs?: boolean,\n  enableData?: boolean,\n  enableSecurity?: boolean,\n  enableArchitecture?: boolean,\n  enablePatterns?: boolean,\n): InstructionOptions {\n  return {\n    cavemanMode,\n    shellCompressionLevel: (shellCompressionLevel as InstructionOptions['shellCompressionLevel']) ?? undefined,\n    enableArchitecture: enableArchitecture ?? false,\n    enableMemory: enableMemory ?? false,\n    enableDocs: enableDocs ?? false,\n    enableData: enableData ?? false,\n    enableSecurity: enableSecurity ?? false,\n    enablePatterns: enablePatterns ?? false,\n    hasHooks: hasHooks ?? false,\n  };\n}\n\nconst violet = '\\x1b[38;5;99m';\nconst resetAnsi = '\\x1b[0m';\nconst dimAnsi = '\\x1b[2m';\nconst boldAnsi = '\\x1b[1m';\n\n/**\n * Print a highlighted MCP config JSON block for targets that need user-scoped setup.\n */\nexport function printMcpSetup(configPath: string, projectRoot: string): void {\n  const escapedPath = projectRoot.replace(/\\\\/g, '\\\\\\\\').replace(/\"/g, '\\\\\"');\n  console.log(`\\n  ${dimAnsi}Add the MCP server manually:${resetAnsi}`);\n  console.log(`  ${dimAnsi}Edit${resetAnsi} ${violet}${boldAnsi}${configPath}${resetAnsi} ${dimAnsi}and add:${resetAnsi}`);\n  console.log(`  ${violet}{${resetAnsi}`);\n  console.log(`  ${violet}  \"mcpServers\": {${resetAnsi}`);\n  console.log(`  ${violet}    \"kirograph\": {${resetAnsi}`);\n  console.log(`  ${violet}      \"command\": \"kirograph\",${resetAnsi}`);\n  console.log(`  ${violet}      \"args\": [\"serve\", \"--mcp\", \"--path\", \"${escapedPath}\"]${resetAnsi}`);\n  console.log(`  ${violet}    }${resetAnsi}`);\n  console.log(`  ${violet}  }${resetAnsi}`);\n  console.log(`  ${violet}}${resetAnsi}\\n`);\n}\n\n/**\n * Print a highlighted CLI command for MCP registration.\n */\nexport function printMcpCommand(command: string): void {\n  console.log(`\\n  ${dimAnsi}Add the MCP server with:${resetAnsi}`);\n  console.log(`  ${violet}${boldAnsi}${command}${resetAnsi}\\n`);\n}\n"],
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+  "sourcesContent": ["import * as fs from 'fs';\nimport * as path from 'path';\nimport { KIROGRAPH_TOOL_NAMES } from '../../mcp/tool-names';\nimport type { InstructionOptions } from './instructions';\nimport type { CavemanMode } from './caveman';\n\nexport type InstallTarget = 'kiro' | 'claude' | 'codex' | 'cursor' | 'antigravity' | 'opencode' | 'windsurf' | 'cline' | 'copilot' | 'copilot-cli' | 'junie' | 'gemini-cli' | 'continue' | 'roo' | 'warp' | 'aider' | 'trae' | 'augment' | 'kilo' | 'amp' | 'devin' | 'replit' | 'goose' | 'openhands' | 'tabnine' | 'mistral-vibe' | 'ibm-bob' | 'crush' | 'droid-factory' | 'forgecode' | 'iflow' | 'qwen' | 'rovo' | 'qoder';\n\nexport const KIROGRAPH_SERVER_NAME = 'kirograph';\nexport const KIROGRAPH_COMMAND = 'kirograph';\nexport const KIROGRAPH_MCP_ARGS = ['serve', '--mcp'];\nexport const KIROGRAPH_SYNC_CMD = 'kirograph sync-if-dirty --quiet 2>/dev/null || true';\nexport const KIROGRAPH_TOOLS = KIROGRAPH_TOOL_NAMES;\nexport const KIROGRAPH_SCOPED_TOOLS = KIROGRAPH_TOOL_NAMES.map(name => `@kirograph/${name}`);\n\nexport function ensureDir(p: string): void {\n  fs.mkdirSync(p, { recursive: true });\n}\n\nexport function readJson(p: string): any {\n  try { return JSON.parse(fs.readFileSync(p, 'utf8')); } catch { return {}; }\n}\n\nexport function writeJson(p: string, data: unknown): void {\n  fs.writeFileSync(p, JSON.stringify(data, null, 2) + '\\n');\n}\n\n/**\n * Write MCP server config to a JSON file under the mcpServers key.\n * Returns true if the config was written, false if already configured (idempotent).\n */\nexport function writeMcpServersConfig(configPath: string, serverConfig: object): boolean {\n  ensureDir(path.dirname(configPath));\n  const existing = readJson(configPath);\n  existing.mcpServers = existing.mcpServers ?? {};\n  if (existing.mcpServers[KIROGRAPH_SERVER_NAME]) {\n    return false; // Already configured\n  }\n  existing.mcpServers[KIROGRAPH_SERVER_NAME] = serverConfig;\n  writeJson(configPath, existing);\n  return true;\n}\n\n/**\n * Always write (overwrite) the MCP server config entry, regardless of whether it already exists.\n * Used when the final state is known upfront and idempotency would cause stale data.\n */\nexport function overwriteMcpServersConfig(configPath: string, serverConfig: object): void {\n  ensureDir(path.dirname(configPath));\n  const existing = readJson(configPath);\n  existing.mcpServers = existing.mcpServers ?? {};\n  existing.mcpServers[KIROGRAPH_SERVER_NAME] = serverConfig;\n  writeJson(configPath, existing);\n}\n\nexport function removeMcpServersConfig(configPath: string): boolean {\n  if (!fs.existsSync(configPath)) return false;\n  const existing = readJson(configPath);\n  if (!existing.mcpServers?.[KIROGRAPH_SERVER_NAME]) return false;\n  delete existing.mcpServers[KIROGRAPH_SERVER_NAME];\n  writeJson(configPath, existing);\n  return true;\n}\n\nexport function appendImportLine(filePath: string, line: string, heading: string): boolean {\n  const existing = fs.existsSync(filePath) ? fs.readFileSync(filePath, 'utf8') : '';\n  if (existing.includes(line)) return false;\n\n  const prefix = existing.length > 0 && !existing.endsWith('\\n') ? '\\n' : '';\n  const separator = existing.trim().length > 0 ? '\\n' : '';\n  fs.writeFileSync(filePath, existing + prefix + separator + heading + '\\n' + line + '\\n');\n  return true;\n}\n\nexport function removeImportLine(filePath: string, line: string): boolean {\n  if (!fs.existsSync(filePath)) return false;\n  const original = fs.readFileSync(filePath, 'utf8');\n  const next = original\n    .split('\\n')\n    .filter(l => l.trim() !== line)\n    .join('\\n')\n    .replace(/\\n{3,}/g, '\\n\\n');\n  if (next === original) return false;\n  fs.writeFileSync(filePath, next.endsWith('\\n') ? next : next + '\\n');\n  return true;\n}\n\nexport function upsertGeneratedBlock(filePath: string, blockId: string, heading: string, content: string): boolean {\n  const start = `<!-- kirograph:${blockId}:start -->`;\n  const end = `<!-- kirograph:${blockId}:end -->`;\n  const block = `${start}\\n${heading}\\n\\n${content.trim()}\\n${end}`;\n  const existing = fs.existsSync(filePath) ? fs.readFileSync(filePath, 'utf8') : '';\n  const pattern = new RegExp(`${escapeRegExp(start)}[\\\\s\\\\S]*?${escapeRegExp(end)}`);\n\n  if (pattern.test(existing)) {\n    const next = existing.replace(pattern, block);\n    if (next === existing) return false;\n    fs.writeFileSync(filePath, next.endsWith('\\n') ? next : next + '\\n');\n    return true;\n  }\n\n  const prefix = existing.length > 0 && !existing.endsWith('\\n') ? '\\n' : '';\n  const separator = existing.trim().length > 0 ? '\\n' : '';\n  fs.writeFileSync(filePath, existing + prefix + separator + block + '\\n');\n  return true;\n}\n\nexport function removeGeneratedBlock(filePath: string, blockId: string): boolean {\n  if (!fs.existsSync(filePath)) return false;\n  const start = `<!-- kirograph:${blockId}:start -->`;\n  const end = `<!-- kirograph:${blockId}:end -->`;\n  const original = fs.readFileSync(filePath, 'utf8');\n  const pattern = new RegExp(`\\\\n?${escapeRegExp(start)}[\\\\s\\\\S]*?${escapeRegExp(end)}\\\\n?`);\n  const next = original.replace(pattern, '\\n').replace(/\\n{3,}/g, '\\n\\n');\n  if (next === original) return false;\n  fs.writeFileSync(filePath, next.endsWith('\\n') ? next : next + '\\n');\n  return true;\n}\n\nfunction escapeRegExp(s: string): string {\n  return s.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&');\n}\n\n/**\n * Build InstructionOptions from the installLate parameters.\n * Used by all targets to pass full feature config to buildAgentInstructions.\n */\nexport function buildInstructionOpts(\n  cavemanMode?: CavemanMode | 'off',\n  shellCompressionLevel?: string,\n  enableMemory?: boolean,\n  hasHooks?: boolean,\n  enableDocs?: boolean,\n  enableData?: boolean,\n  enableSecurity?: boolean,\n  enableArchitecture?: boolean,\n  enablePatterns?: boolean,\n): InstructionOptions {\n  return {\n    cavemanMode,\n    shellCompressionLevel: (shellCompressionLevel as InstructionOptions['shellCompressionLevel']) ?? undefined,\n    enableArchitecture: enableArchitecture ?? false,\n    enableMemory: enableMemory ?? false,\n    enableDocs: enableDocs ?? false,\n    enableData: enableData ?? false,\n    enableSecurity: enableSecurity ?? false,\n    enablePatterns: enablePatterns ?? false,\n    hasHooks: hasHooks ?? false,\n  };\n}\n\nconst violet = '\\x1b[38;5;99m';\nconst resetAnsi = '\\x1b[0m';\nconst dimAnsi = '\\x1b[2m';\nconst boldAnsi = '\\x1b[1m';\n\n/**\n * Print a highlighted MCP config JSON block for targets that need user-scoped setup.\n */\nexport function printMcpSetup(configPath: string, projectRoot: string): void {\n  const escapedPath = projectRoot.replace(/\\\\/g, '\\\\\\\\').replace(/\"/g, '\\\\\"');\n  console.log(`\\n  ${dimAnsi}Add the MCP server manually:${resetAnsi}`);\n  console.log(`  ${dimAnsi}Edit${resetAnsi} ${violet}${boldAnsi}${configPath}${resetAnsi} ${dimAnsi}and add:${resetAnsi}`);\n  console.log(`  ${violet}{${resetAnsi}`);\n  console.log(`  ${violet}  \"mcpServers\": {${resetAnsi}`);\n  console.log(`  ${violet}    \"kirograph\": {${resetAnsi}`);\n  console.log(`  ${violet}      \"command\": \"kirograph\",${resetAnsi}`);\n  console.log(`  ${violet}      \"args\": [\"serve\", \"--mcp\", \"--path\", \"${escapedPath}\"]${resetAnsi}`);\n  console.log(`  ${violet}    }${resetAnsi}`);\n  console.log(`  ${violet}  }${resetAnsi}`);\n  console.log(`  ${violet}}${resetAnsi}\\n`);\n}\n\n/**\n * Print a highlighted CLI command for MCP registration.\n */\nexport function printMcpCommand(command: string): void {\n  console.log(`\\n  ${dimAnsi}Add the MCP server with:${resetAnsi}`);\n  console.log(`  ${violet}${boldAnsi}${command}${resetAnsi}\\n`);\n}\n"],
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   "names": []
 }

package/dist/bin/installer/config-prompt.js

@@ -63,7 +63,7 @@ async function promptConfigOptions(rl) {
     "Semantic embeddings (similarity search):",
     "Enables natural-language code search via vector embeddings. A local model (~130MB) is downloaded on first use."
   );
-  const patch = { enableEmbeddings, useVecIndex: false, semanticEngine: "cosine", turboquantMemDocs: false, turboquantBits: 3, turbovecMemDocs: false, turbovecBits: 4, typesenseDashboard: false, qdrantDashboard: false, extractDocstrings: true, trackCallSites: true, enableArchitecture: false, cavemanMode: "off", shellCompressionLevel: "normal", enableMemory: false, enableWatchmen: false, watchmenThreshold: 5, watchmenSynthesisMode: "local", watchmenLocalModel: "onnx-community/gemma-4-E4B-it-ONNX", enableDocs: false, docsContextLimit: 0, enableData: false, dataContextLimit: 0, enableSecurity: false, enablePatterns: false };
+  const patch = { enableEmbeddings, useVecIndex: false, semanticEngine: "cosine", turboquantMemDocs: false, turboquantBits: 3, turbovecMemDocs: false, turbovecBits: 4, typesenseDashboard: false, qdrantDashboard: false, extractDocstrings: false, trackCallSites: false, enableArchitecture: false, cavemanMode: "off", shellCompressionLevel: "normal", enableMemory: false, enableWatchmen: false, watchmenThreshold: 5, watchmenSynthesisMode: "local", watchmenLocalModel: "onnx-community/gemma-4-E4B-it-ONNX", enableDocs: false, docsContextLimit: 0, enableData: false, dataContextLimit: 0, enableSecurity: false, enablePatterns: false, enableWiki: false, wikiSynthesisMode: "agent", wikiLocalModel: "onnx-community/gemma-4-E4B-it-ONNX", enableCodeHealth: false, enableAdvancedAnalysis: false, enableAgentUtils: false };
   if (enableEmbeddings) {
     const modelChoice = await (0, import_prompts.arrowSelect)(
       rl,
@@ -156,12 +156,14 @@ async function promptConfigOptions(rl) {
   patch.extractDocstrings = await (0, import_prompts.askToggle)(
     rl,
     "Docstring extraction:",
-    "Enriches symbol metadata and improves context quality. Slightly increases indexing time."
+    "Enriches symbol metadata and improves context quality. Slightly increases indexing time.",
+    false
   );
   patch.trackCallSites = await (0, import_prompts.askToggle)(
     rl,
     "Call site tracking (caller/callee graph):",
-    "Enables kirograph_callers and kirograph_callees MCP tools. Increases index size."
+    "Enables kirograph_callers and kirograph_callees MCP tools. Increases index size.",
+    false
   );
   patch.enableArchitecture = await (0, import_prompts.askToggle)(
     rl,
@@ -169,6 +171,27 @@ async function promptConfigOptions(rl) {
     "Detects packages from manifests and architectural layers. Enables kirograph_architecture, kirograph_coupling, kirograph_package.",
     false
   );
+  if (patch.enableArchitecture) {
+    patch.enableAdvancedAnalysis = await (0, import_prompts.askToggle)(
+      rl,
+      "Advanced graph analysis (type hierarchies, flows, communities, refactor):",
+      "Enables kirograph_type_hierarchy, kirograph_flows, kirograph_communities, kirograph_refactor. Most useful alongside architecture analysis.",
+      false
+    );
+  }
+  (0, import_prompts.printSection)("\u{1F4CA}", "Graph Tools");
+  patch.enableCodeHealth = await (0, import_prompts.askToggle)(
+    rl,
+    "Code health tools (hotspots, dead code, change tracking):",
+    "Enables kirograph_hotspots, kirograph_surprising, kirograph_diff, kirograph_dead_code, kirograph_circular_deps.",
+    false
+  );
+  patch.enableAgentUtils = await (0, import_prompts.askToggle)(
+    rl,
+    "Agent utilities (file caching, budget tracking):",
+    "Enables kirograph_read, kirograph_gain, kirograph_budget.",
+    false
+  );
   (0, import_prompts.printSection)("\u{1F512}", "Security");
   patch.enableSecurity = await (0, import_prompts.askToggle)(
     rl,
@@ -244,13 +267,16 @@ async function promptConfigOptions(rl) {
     { value: "ultra", label: "ultra", description: "Max compression, abbreviations, \u2192 for causality" }
   ]);
   patch.cavemanMode = cavemanChoice;
-  const compressionChoice = await (0, import_prompts.arrowSelect)(rl, "Shell compression (kirograph_exec default level):", [
-    { value: "off", label: "off", description: "No compression hook or steering (tool still available)" },
+  const compressionChoice = await (0, import_prompts.arrowSelect)(rl, "Shell compression (kirograph_exec):", [
+    { value: "off", label: "off", description: "Disables kirograph_exec entirely" },
     { value: "normal", label: "normal", description: "Balanced: removes noise, keeps structure (recommended)" },
     { value: "aggressive", label: "aggressive", description: "More compact: groups by category, limits output" },
     { value: "ultra", label: "ultra", description: "Maximum compression: counts and summaries only" }
   ]);
   patch.shellCompressionLevel = compressionChoice;
+  if (compressionChoice === "off") {
+    console.log("  \u2139  kirograph_exec disabled (shell compression is off)");
+  }
   (0, import_prompts.printSection)("\u{1F9E0}", "Memory");
   patch.enableMemory = await (0, import_prompts.askToggle)(
     rl,
@@ -324,6 +350,71 @@ async function promptConfigOptions(rl) {
       }
     }
   }
+  (0, import_prompts.printSection)("\u{1F4D6}", "Wiki");
+  patch.enableWiki = await (0, import_prompts.askToggle)(
+    rl,
+    "LLM Wiki (Karpathy-style structured knowledge base):",
+    "Maintains a set of markdown pages that compound knowledge across sessions. Supports search, ingest (two-tool flow), conflict resolution, and health checks via kirograph_wiki_* tools.",
+    false
+  );
+  if (patch.enableWiki) {
+    const wikiMode = await (0, import_prompts.arrowSelect)(
+      rl,
+      "Wiki synthesis mode:",
+      [
+        {
+          value: "agent",
+          label: "Active agent (recommended)",
+          description: "Uses the active LLM agent to generate WIKI_DIFF blocks. Works with any AI tool. Consumes API tokens on ingest."
+        },
+        {
+          value: "local",
+          label: "Local model",
+          description: "Runs a local HuggingFace model to generate diffs. Zero API cost, no data leaves your machine. Same infra as Watchmen."
+        }
+      ]
+    );
+    patch.wikiSynthesisMode = wikiMode;
+    if (wikiMode === "local") {
+      const WIKI_LOCAL_MODELS = [
+        {
+          value: "onnx-community/gemma-4-E4B-it-ONNX",
+          label: "Gemma 4 E4B (recommended)",
+          description: "~3\u20134 GB \xB7 Google DeepMind Gemma 4 \xB7 4.5B params \xB7 128K context \xB7 Best quality \xB7 Apache 2.0"
+        },
+        {
+          value: "onnx-community/Qwen2.5-1.5B-Instruct",
+          label: "Qwen2.5-1.5B",
+          description: "~1.5 GB \xB7 Lighter option if RAM is limited \xB7 Acceptable quality"
+        },
+        {
+          value: "HuggingFaceTB/SmolLM2-1.7B-Instruct",
+          label: "SmolLM2-1.7B",
+          description: "~1.7 GB \xB7 HuggingFace compact model \xB7 Good at following structured formats"
+        },
+        {
+          value: "__other__",
+          label: "Other",
+          description: "Enter a custom HuggingFace model ID (must have ONNX weights on onnx-community)"
+        }
+      ];
+      const wikiModelChoice = await (0, import_prompts.arrowSelect)(rl, "Local wiki synthesis model:", WIKI_LOCAL_MODELS.map((m) => ({ value: m.value, label: m.label, description: m.description })));
+      if (wikiModelChoice === "__other__") {
+        console.log(`
+  ${import_prompts.dim}Enter a HuggingFace model ID (e.g. onnx-community/gemma-4-E4B-it-ONNX).${import_prompts.reset}`);
+        while (true) {
+          const raw = (await (0, import_prompts.ask)(rl, `  ${import_prompts.violet}Model identifier:${import_prompts.reset} `)).trim();
+          if (raw.includes("/")) {
+            patch.wikiLocalModel = raw;
+            break;
+          }
+          console.log(`  Expected a HuggingFace model ID in the format org/model-name.`);
+        }
+      } else {
+        patch.wikiLocalModel = wikiModelChoice;
+      }
+    }
+  }
   return patch;
 }
 // Annotate the CommonJS export names for ESM import in node: