kirograph 0.20.1 → 0.22.0

package/dist/vectors/index.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/vectors/index.ts"],
-  "sourcesContent": ["/**\n * KiroGraph Vector Manager\n *\n * Semantic search via configurable local embedding models using @huggingface/transformers v3.\n * Mirrors CodeGraph src/vectors/ (embedder.ts + manager.ts) adapted for KiroGraph:\n *   - Cache dir: ~/.kirograph/models/ (not ~/.codegraph/models/)\n *   - Embeddings stored in the `vectors` SQLite table\n *   - Cosine similarity search done in-process by default (no extra deps)\n *   - ANN search via sqlite-vec opt-in: set config.useVecIndex = true\n *     (requires `npm install better-sqlite3 sqlite-vec`)\n *   - Disabled by default; opt-in via config.enableEmbeddings = true\n */\n\nimport * as path from 'path';\nimport * as fs from 'fs';\nimport { homedir } from 'os';\nimport { logDebug, logWarn, logError } from '../errors';\nimport type { KiroGraphConfig } from '../config';\nimport type { Node } from '../types';\nimport type { GraphDatabase } from '../db/database';\nimport { VecIndex } from './vec-index';\nimport { OramaIndex } from './orama-index';\nimport { PGliteIndex } from './pglite-index';\nimport { LanceDBIndex } from './lancedb-index';\nimport { QdrantIndex } from './qdrant-index';\nimport { TypesenseIndex } from './typesense-index';\n\n// \u2500\u2500 Constants \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nconst DEFAULT_MODEL = 'nomic-ai/nomic-embed-text-v1.5';\nconst DEFAULT_EMBEDDING_DIM = 768;\nconst GLOBAL_MODELS_DIR = path.join(homedir(), '.kirograph', 'models');\nconst BATCH_SIZE = 32;\nconst MIN_BATCH_SIZE = 4;\nconst MAX_TOKEN_CHARS = 2000;\n\n/** Node kinds worth embedding \u2014 high information density */\nconst EMBEDDABLE_KINDS = new Set<Node['kind']>([\n  'function', 'method', 'class', 'interface', 'type_alias', 'component', 'module',\n]);\n\n// \u2500\u2500 Embedder \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\ntype Pipeline = any;\nlet transformers: typeof import('@huggingface/transformers') | null = null;\n\nasync function getTransformers() {\n  if (!transformers) {\n    transformers = await import('@huggingface/transformers');\n  }\n  return transformers;\n}\n\n/**\n * Build a searchable text representation of a node.\n * Mirrors CodeGraph TextEmbedder.createNodeText().\n * Truncated to MAX_TOKEN_CHARS to stay within the model's memory-safe token limit.\n * Priority: kind + name > qualified name > file path > signature > docstring.\n * This ensures the most important search signal is always preserved.\n */\nfunction nodeToText(node: Node): string {\n  const parts = [`${node.kind}: ${node.name}`];\n  if (node.qualifiedName && node.qualifiedName !== node.name) {\n    parts.push(`path: ${node.qualifiedName}`);\n  }\n  parts.push(`file: ${node.filePath}`);\n  if (node.signature) parts.push(`signature: ${node.signature}`);\n  if (node.docstring) parts.push(`documentation: ${node.docstring}`);\n  const text = parts.join('\\n');\n  if (text.length > MAX_TOKEN_CHARS) {\n    logDebug(`nodeToText: truncated ${node.id} from ${text.length} to ${MAX_TOKEN_CHARS} chars`);\n    return text.slice(0, MAX_TOKEN_CHARS);\n  }\n  return text;\n}\n\n/** Cosine similarity between two equal-length Float32Arrays. */\nfunction cosine(a: Float32Array, b: Float32Array): number {\n  let dot = 0, na = 0, nb = 0;\n  for (let i = 0; i < a.length; i++) {\n    dot += a[i]! * b[i]!;\n    na += a[i]! * a[i]!;\n    nb += b[i]! * b[i]!;\n  }\n  const denom = Math.sqrt(na) * Math.sqrt(nb);\n  return denom === 0 ? 0 : dot / denom;\n}\n\n/** Extract a flat Float32Array from the transformer pipeline output. */\nfunction toFloat32Array(data: unknown): Float32Array {\n  if (data instanceof Float32Array) return data;\n  if (Array.isArray(data)) return new Float32Array(data);\n  if (data && typeof data === 'object' && 'length' in data) {\n    return Float32Array.from(Array.from(data as ArrayLike<number>));\n  }\n  throw new Error('Unsupported embedding data format');\n}\n\n// \u2500\u2500 VectorManager \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport class VectorManager {\n  private pipeline: Pipeline | null = null;\n  private _initialized = false;\n  private vecIndex: VecIndex | null = null;\n  private oramaIndex: OramaIndex | null = null;\n  private pgliteIndex: PGliteIndex | null = null;\n  private lancedbIndex: LanceDBIndex | null = null;\n  private qdrantIndex: QdrantIndex | null = null;\n  private typesenseIndex: TypesenseIndex | null = null;\n  private _engineFallback: string | null = null;\n\n  constructor(\n    private readonly db: GraphDatabase,\n    private readonly config: KiroGraphConfig,\n    private readonly projectRoot?: string,\n  ) {}\n\n  isInitialized(): boolean {\n    return this.config.enableEmbeddings === true && this._initialized;\n  }\n\n  /** Non-null when the configured engine failed to load and cosine is being used instead. */\n  getEngineFallback(): string | null {\n    return this._engineFallback;\n  }\n\n  /**\n   * Load the embedding model. No-op when embeddings are disabled.\n   * Fails silently so callers can continue without semantic search.\n   * When config.useVecIndex is true, also initializes the sqlite-vec ANN index.\n   */\n  async initialize(onProgress?: (file: string, loaded: number, total: number, done: boolean) => void): Promise<void> {\n    if (!this.config.enableEmbeddings) {\n      logDebug('VectorManager: embeddings disabled');\n      return;\n    }\n    if (this._initialized) return;\n\n    const rawModel = this.config.embeddingModel || DEFAULT_MODEL;\n    // Guard against an invalid model ID (e.g. 'y' typed by mistake in the installer)\n    const modelId = rawModel.includes('/') ? rawModel : DEFAULT_MODEL;\n    if (rawModel !== modelId) {\n      logWarn(`VectorManager: invalid embeddingModel \"${rawModel}\", using default instead`, { default: DEFAULT_MODEL });\n    }\n    const cacheDir = GLOBAL_MODELS_DIR;\n\n    try {\n      const { pipeline, env } = await getTransformers();\n      env.cacheDir = cacheDir;\n\n      if (!fs.existsSync(cacheDir)) {\n        fs.mkdirSync(cacheDir, { recursive: true });\n      }\n\n      // Skip remote check if model already cached (HuggingFace uses '--' as path separator)\n      // HuggingFace transformers v3 stores models as <org>/<model>/ (v2 used <org>--<model>)\n      const cached = fs.existsSync(path.join(cacheDir, modelId));\n      if (cached) env.allowRemoteModels = false;\n\n      let lastFile = '';\n      this.pipeline = await pipeline('feature-extraction', modelId, {\n        dtype: 'auto',\n        ...(!cached && onProgress ? {\n          progress_callback: (p: { status: string; file?: string; loaded?: number; total?: number }) => {\n            if (p.status === 'progress' && p.file) {\n              lastFile = p.file;\n              onProgress(p.file, p.loaded ?? 0, p.total ?? 0, false);\n            } else if (p.status === 'done' && lastFile) {\n              onProgress(lastFile, 1, 1, true);\n              lastFile = '';\n            }\n          },\n        } : {}),\n      });\n\n      // Validate embeddingDim against the model's actual output shape.\n      // Run a single test embedding and compare dims[1] to config.embeddingDim.\n      // If they differ, warn and update the runtime dim so downstream engines\n      // are initialised with the correct size (config.json is not rewritten here).\n      try {\n        const testOut = await this.pipeline('test', { pooling: 'mean', normalize: true });\n        const actualDim: number = testOut.dims?.[1] ?? (testOut.data?.length as number);\n        const configuredDim = this.config.embeddingDim ?? DEFAULT_EMBEDDING_DIM;\n        if (actualDim && actualDim !== configuredDim) {\n          logWarn(\n            `VectorManager: embeddingDim mismatch \u2014 config says ${configuredDim} but model outputs ${actualDim}. Using actual dim.`,\n            { model: modelId, configuredDim, actualDim },\n          );\n          // Patch the runtime config so all engine constructors below use the correct dim\n          (this.config as unknown as Record<string, unknown>).embeddingDim = actualDim;\n        }\n      } catch { /* test embedding failed \u2014 proceed with configured dim */ }\n\n      this._initialized = true;\n      logDebug('VectorManager: model loaded', { modelId, embeddingDim: this.config.embeddingDim ?? DEFAULT_EMBEDDING_DIM });\n    } catch (err) {\n      logError('VectorManager: failed to load embedding model', {\n        model: modelId,\n        error: String(err),\n      });\n      this._initialized = false;\n      return;\n    }\n\n    // Initialize the selected search engine\n    const engine = this.config.semanticEngine ?? (this.config.useVecIndex ? 'sqlite-vec' : 'cosine');\n\n    if (this.projectRoot && engine !== 'cosine') {\n      const kirographDir = path.join(this.projectRoot, '.kirograph');\n\n      const embeddingDim = this.config.embeddingDim ?? DEFAULT_EMBEDDING_DIM;\n\n    if (engine === 'sqlite-vec') {\n        this.vecIndex = new VecIndex(kirographDir, embeddingDim);\n        await this.vecIndex.initialize();\n        if (this.vecIndex.isAvailable()) {\n          logDebug('VectorManager: sqlite-vec ANN index ready');\n        } else {\n          this._engineFallback = 'sqlite-vec unavailable \u2014 run: npm install better-sqlite3 sqlite-vec';\n          logDebug('VectorManager: sqlite-vec unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'orama') {\n        this.oramaIndex = new OramaIndex(kirographDir, embeddingDim);\n        await this.oramaIndex.initialize();\n        if (this.oramaIndex.isAvailable()) {\n          logDebug('VectorManager: Orama hybrid index ready');\n        } else {\n          this._engineFallback = 'orama unavailable \u2014 run: npm install @orama/orama @orama/plugin-data-persistence';\n          logDebug('VectorManager: Orama unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'pglite') {\n        this.pgliteIndex = new PGliteIndex(kirographDir, embeddingDim);\n        await this.pgliteIndex.initialize();\n        if (this.pgliteIndex.isAvailable()) {\n          logDebug('VectorManager: PGlite+pgvector hybrid index ready');\n        } else {\n          this._engineFallback = 'pglite unavailable \u2014 run: npm install @electric-sql/pglite';\n          logDebug('VectorManager: PGlite unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'lancedb') {\n        this.lancedbIndex = new LanceDBIndex(kirographDir, embeddingDim);\n        await this.lancedbIndex.initialize();\n        if (this.lancedbIndex.isAvailable()) {\n          logDebug('VectorManager: LanceDB ANN index ready');\n        } else {\n          this._engineFallback = 'lancedb unavailable \u2014 run: npm install @lancedb/lancedb';\n          logDebug('VectorManager: LanceDB unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'qdrant') {\n        this.qdrantIndex = new QdrantIndex(kirographDir, embeddingDim);\n        await this.qdrantIndex.initialize();\n        if (this.qdrantIndex.isAvailable()) {\n          logDebug('VectorManager: Qdrant ANN index ready');\n        } else {\n          this._engineFallback = 'qdrant unavailable \u2014 run: npm install qdrant-local';\n          logDebug('VectorManager: Qdrant unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'typesense') {\n        this.typesenseIndex = new TypesenseIndex(kirographDir, embeddingDim);\n        await this.typesenseIndex.initialize();\n        if (this.typesenseIndex.isAvailable()) {\n          logDebug('VectorManager: Typesense ANN index ready');\n        } else {\n          const reason = this.typesenseIndex.getFailReason();\n          this._engineFallback = reason\n            ? `typesense initialization failed: ${reason}`\n            : 'typesense unavailable \u2014 run: npm install typesense';\n          logDebug('VectorManager: Typesense unavailable, falling back to in-process cosine');\n        }\n      }\n    }\n  }\n\n  /**\n   * Embed a single node and persist to the vectors table.\n   * Skips silently when disabled; logs on failure without throwing.\n   */\n  async embedNode(node: Node): Promise<void> {\n    if (!this.config.enableEmbeddings) return;\n    if (!this._initialized || !this.pipeline) {\n      logError('Embedding model unavailable', { model: this.config.embeddingModel });\n      return;\n    }\n    if (!EMBEDDABLE_KINDS.has(node.kind)) return;\n\n    try {\n      const text = `search_document: ${nodeToText(node)}`;\n      const output = await this.pipeline(text, { pooling: 'mean', normalize: true });\n      const embedding = toFloat32Array(output.data);\n      // non-cosine engines are sole stores of record when active \u2014 skip the SQLite vectors table\n      if (!this.vecIndex?.isAvailable() && !this.oramaIndex?.isAvailable() && !this.pgliteIndex?.isAvailable() && !this.lancedbIndex?.isAvailable() && !this.qdrantIndex?.isAvailable() && !this.typesenseIndex?.isAvailable()) {\n        this.db.storeEmbedding(node.id, embedding, this.config.embeddingModel || DEFAULT_MODEL);\n      }\n      this.vecIndex?.upsert(node.id, embedding);\n      if (this.oramaIndex?.isAvailable()) await this.oramaIndex.upsert(node, embedding);\n      if (this.pgliteIndex?.isAvailable()) await this.pgliteIndex.upsert(node, embedding);\n      if (this.lancedbIndex?.isAvailable()) await this.lancedbIndex.upsert(node, embedding);\n      if (this.qdrantIndex?.isAvailable()) await this.qdrantIndex.upsert(node, embedding);\n      if (this.typesenseIndex?.isAvailable()) await this.typesenseIndex.upsert(node, embedding);\n    } catch (err) {\n      logWarn('Failed to embed node', { nodeId: node.id, error: String(err) });\n    }\n  }\n\n  /** Number of entries currently in the active ANN/hybrid index (0 when not in use). */\n  async vecIndexCount(): Promise<number> {\n    if (this.vecIndex?.isAvailable()) return this.vecIndex.count();\n    if (this.oramaIndex?.isAvailable()) return this.oramaIndex.count();\n    if (this.pgliteIndex?.isAvailable()) return this.pgliteIndex.count();\n    if (this.lancedbIndex?.isAvailable()) return this.lancedbIndex.count();\n    if (this.qdrantIndex?.isAvailable()) return this.qdrantIndex.count();\n    if (this.typesenseIndex?.isAvailable()) return this.typesenseIndex.count();\n    return 0;\n  }\n\n  /**\n   * Remove embeddings for the given node IDs from the active index.\n   * For cosine the `vectors` SQLite table is cleaned up automatically via FK cascade\n   * when nodes are deleted. For sqlite-vec, orama, and pglite the engine itself is\n   * the sole store of record, so we delete from it explicitly here.\n   */\n  async deleteEmbeddings(nodeIds: string[]): Promise<void> {\n    for (const id of nodeIds) {\n      this.vecIndex?.delete(id);\n      if (this.oramaIndex?.isAvailable()) await this.oramaIndex.delete(id);\n      if (this.pgliteIndex?.isAvailable()) await this.pgliteIndex.delete(id);\n      if (this.lancedbIndex?.isAvailable()) await this.lancedbIndex.delete(id);\n      if (this.qdrantIndex?.isAvailable()) await this.qdrantIndex.delete(id);\n      if (this.typesenseIndex?.isAvailable()) await this.typesenseIndex.delete(id);\n    }\n  }\n\n  /**\n   * Embed all eligible nodes in the database that don't yet have embeddings.\n   * Streams nodes in pages to avoid loading the entire node set into memory \u2014\n   * critical for large codebases (100K+ symbols) where a single getAllNodes()\n   * call can exhaust the Node.js heap or the WASM linear memory.\n   *\n   * Uses dynamic batch sizing: starts at BATCH_SIZE, halves on OOM errors,\n   * and recovers back to full size after successful batches.\n   *\n   * Emits a pre-flight warning via onProgress when the embeddable node count\n   * exceeds LARGE_CODEBASE_THRESHOLD so the CLI can surface it to the user.\n   */\n  async embedAll(onProgress?: (current: number, total: number) => void): Promise<number> {\n    if (!this.isInitialized() || !this.pipeline) return 0;\n\n    const modelId = this.config.embeddingModel || DEFAULT_MODEL;\n    const EMBEDDABLE_KINDS_ARRAY = [...EMBEDDABLE_KINDS] as string[];\n\n    // Pre-flight: count embeddable nodes without loading them\n    const totalEmbeddable = this.db.countEmbeddableNodes(EMBEDDABLE_KINDS_ARRAY);\n    const LARGE_CODEBASE_THRESHOLD = 100_000;\n    if (totalEmbeddable > LARGE_CODEBASE_THRESHOLD) {\n      // Signal the large-codebase warning via a special progress event.\n      // current=-1 is the sentinel; the CLI renderer checks for it.\n      onProgress?.(-1, totalEmbeddable);\n    }\n\n    // Collect already-embedded IDs (needed to skip nodes already in the index)\n    const existingIds = new Set(\n      this.typesenseIndex?.isAvailable()\n        ? await this.typesenseIndex.getEmbeddedNodeIds()\n        : this.qdrantIndex?.isAvailable()\n        ? await this.qdrantIndex.getEmbeddedNodeIds()\n        : this.lancedbIndex?.isAvailable()\n        ? await this.lancedbIndex.getEmbeddedNodeIds()\n        : this.pgliteIndex?.isAvailable()\n          ? await this.pgliteIndex.getEmbeddedNodeIds()\n          : this.oramaIndex?.isAvailable()\n            ? await this.oramaIndex.getEmbeddedNodeIds()\n            : this.vecIndex?.isAvailable()\n              ? this.vecIndex.getEmbeddedNodeIds()\n              : this.db.getEmbeddedNodeIds()\n    );\n\n    // Stream nodes in pages \u2014 never hold more than PAGE_SIZE nodes in memory at once\n    const PAGE_SIZE = 2000;\n    let pageOffset = 0;\n    let processed = 0;\n    let currentBatchSize = BATCH_SIZE;\n    let consecutiveSuccesses = 0;\n\n    // We need to know the total pending count for progress reporting.\n    // Approximate: totalEmbeddable - existingIds.size (may be slightly off if\n    // existingIds contains IDs for non-embeddable kinds, but close enough).\n    const totalPending = Math.max(0, totalEmbeddable - existingIds.size);\n    if (totalPending === 0) {\n      if (this.oramaIndex?.isAvailable()) await this.oramaIndex.save();\n      return 0;\n    }\n\n    logDebug(`VectorManager: embedding ~${totalPending} nodes (${existingIds.size} already embedded, streaming in pages of ${PAGE_SIZE})`);\n\n    // Buffer of pending nodes from the current page\n    let pageBuffer: Node[] = [];\n    let pageBufferOffset = 0; // index within pageBuffer\n    let pageExhausted = false;\n\n    const fetchNextPage = () => {\n      const page = this.db.getEmbeddableNodesPaged(EMBEDDABLE_KINDS_ARRAY, PAGE_SIZE, pageOffset);\n      pageOffset += page.length;\n      pageBuffer = page.filter(n => !existingIds.has(n.id));\n      pageBufferOffset = 0;\n      if (page.length < PAGE_SIZE) pageExhausted = true;\n    };\n\n    fetchNextPage();\n\n    while (pageBuffer.length > 0 || (!pageExhausted && pageBufferOffset >= pageBuffer.length)) {\n      // Refill page buffer when exhausted\n      if (pageBufferOffset >= pageBuffer.length) {\n        if (pageExhausted) break;\n        fetchNextPage();\n        if (pageBuffer.length === 0) break;\n      }\n\n      // Slice a batch from the current page buffer\n      const batch = pageBuffer.slice(pageBufferOffset, pageBufferOffset + currentBatchSize);\n      if (batch.length === 0) break;\n\n      const texts = batch.map(n => `search_document: ${nodeToText(n)}`);\n\n      try {\n        const outputs = await this.pipeline(texts, { pooling: 'mean', normalize: true });\n        const dims: number[] = outputs.dims;\n        const dim = dims[1] ?? (this.config.embeddingDim ?? DEFAULT_EMBEDDING_DIM);\n        const flat = toFloat32Array(outputs.data);\n\n        const tsNodes: Node[] = [];\n        const tsEmbeddings: Float32Array[] = [];\n        const qdNodes: Node[] = [];\n        const qdEmbeddings: Float32Array[] = [];\n\n        for (let j = 0; j < batch.length; j++) {\n          const node = batch[j]!;\n          const embedding = flat.slice(j * dim, (j + 1) * dim);\n          if (!this.vecIndex?.isAvailable() && !this.oramaIndex?.isAvailable() && !this.pgliteIndex?.isAvailable() && !this.lancedbIndex?.isAvailable() && !this.qdrantIndex?.isAvailable() && !this.typesenseIndex?.isAvailable()) {\n            this.db.storeEmbedding(node.id, embedding, modelId);\n          }\n          this.vecIndex?.upsert(node.id, embedding);\n          if (this.oramaIndex?.isAvailable()) await this.oramaIndex.upsert(node, embedding);\n          if (this.pgliteIndex?.isAvailable()) await this.pgliteIndex.upsert(node, embedding);\n          if (this.lancedbIndex?.isAvailable()) await this.lancedbIndex.upsert(node, embedding);\n          if (this.qdrantIndex?.isAvailable()) { qdNodes.push(node); qdEmbeddings.push(embedding); }\n          if (this.typesenseIndex?.isAvailable()) { tsNodes.push(node); tsEmbeddings.push(embedding); }\n        }\n\n        if (qdNodes.length > 0) await this.qdrantIndex!.bulkUpsert(qdNodes, qdEmbeddings);\n        if (tsNodes.length > 0) await this.typesenseIndex!.bulkUpsert(tsNodes, tsEmbeddings);\n\n        pageBufferOffset += batch.length;\n        processed += batch.length;\n        consecutiveSuccesses++;\n\n        if (currentBatchSize < BATCH_SIZE && consecutiveSuccesses >= 5) {\n          currentBatchSize = Math.min(currentBatchSize * 2, BATCH_SIZE);\n          logDebug(`VectorManager: batch size recovered to ${currentBatchSize}`);\n          consecutiveSuccesses = 0;\n        }\n      } catch (err) {\n        const errMsg = String(err);\n        const isOOM = errMsg.includes('bad allocation') || errMsg.includes('OOM') || errMsg.includes('out of memory');\n\n        if (isOOM && currentBatchSize > MIN_BATCH_SIZE) {\n          currentBatchSize = Math.max(Math.floor(currentBatchSize / 2), MIN_BATCH_SIZE);\n          consecutiveSuccesses = 0;\n          logWarn(`VectorManager: OOM at batch offset ${pageBufferOffset} \u2014 reducing batch size to ${currentBatchSize} and retrying`, {\n            batchSize: currentBatchSize,\n            nodeIds: batch.slice(0, 3).map(n => n.id),\n          });\n          // Don't advance pageBufferOffset \u2014 retry the same batch\n        } else if (isOOM && currentBatchSize <= MIN_BATCH_SIZE) {\n          logError(`VectorManager: OOM even at minimum batch size ${MIN_BATCH_SIZE} \u2014 skipping ${batch.length} nodes`, {\n            batchStart: pageBufferOffset,\n            skippedNodes: batch.map(n => `${n.kind}:${n.name} (${n.filePath})`).slice(0, 5),\n          });\n          pageBufferOffset += batch.length;\n          processed += batch.length;\n          consecutiveSuccesses = 0;\n        } else {\n          logWarn(`VectorManager: batch embedding failed at offset ${pageBufferOffset}`, {\n            batchSize: currentBatchSize,\n            error: errMsg,\n          });\n          pageBufferOffset += batch.length;\n          processed += batch.length;\n          consecutiveSuccesses = 0;\n        }\n      }\n\n      onProgress?.(processed, totalPending);\n    }\n\n    if (this.oramaIndex?.isAvailable()) await this.oramaIndex.save();\n\n    logDebug(`VectorManager: embedding complete \u2014 ${processed} processed, final batch size: ${currentBatchSize}`);\n\n    return processed;\n  }\n\n  /**\n   * Semantic search: embed the query and return top-N nodes by similarity.\n   *\n   * When sqlite-vec is available (useVecIndex: true), delegates ANN search to\n   * VecIndex (fast, sub-linear). Otherwise falls back to in-process cosine\n   * similarity over all stored embeddings (linear scan, no extra deps).\n   *\n   * Returns empty array when not initialized.\n   */\n  async search(query: string, topN = 10): Promise<Node[]> {\n    if (!this.isInitialized() || !this.pipeline) return [];\n\n    try {\n      const text = `search_query: ${query}`;\n      const output = await this.pipeline(text, { pooling: 'mean', normalize: true });\n      const queryVec = toFloat32Array(output.data);\n\n      let nodeIds: string[];\n\n      if (this.pgliteIndex?.isAvailable()) {\n        // Hybrid search via PGlite+pgvector \u2014 exact vector + full-text in one SQL query\n        nodeIds = await this.pgliteIndex.search(query, queryVec, topN);\n      } else if (this.oramaIndex?.isAvailable()) {\n        // Hybrid search via Orama \u2014 full-text + vector combined\n        nodeIds = await this.oramaIndex.search(query, queryVec, topN);\n      } else if (this.lancedbIndex?.isAvailable()) {\n        // ANN search via LanceDB \u2014 columnar Lance format, cosine metric\n        nodeIds = await this.lancedbIndex.search(queryVec, topN);\n      } else if (this.qdrantIndex?.isAvailable()) {\n        // ANN search via Qdrant \u2014 HNSW index, cosine metric\n        nodeIds = await this.qdrantIndex.search(queryVec, topN);\n      } else if (this.typesenseIndex?.isAvailable()) {\n        // ANN search via Typesense \u2014 HNSW index, cosine metric\n        nodeIds = await this.typesenseIndex.search(queryVec, topN);\n      } else if (this.vecIndex?.isAvailable()) {\n        // ANN search via sqlite-vec \u2014 fast, sub-linear\n        nodeIds = this.vecIndex.search(queryVec, topN);\n      } else {\n        // In-process cosine similarity \u2014 linear scan over all stored embeddings\n        const allEmbeddings = this.db.getAllEmbeddings();\n        nodeIds = allEmbeddings\n          .map(({ nodeId, embedding }) => ({ nodeId, score: cosine(queryVec, embedding) }))\n          .filter(r => r.score >= 0.3)\n          .sort((a, b) => b.score - a.score)\n          .slice(0, topN)\n          .map(r => r.nodeId);\n      }\n\n      const results: Node[] = [];\n      for (const nodeId of nodeIds) {\n        const node = this.db.getNode(nodeId);\n        if (node) results.push(node);\n      }\n      return results;\n    } catch (err) {\n      logWarn('VectorManager: search failed', { error: String(err) });\n      return [];\n    }\n  }\n\n  /** Release engine resources (e.g. kill Qdrant child process). */\n  close(): void {\n    this.qdrantIndex?.close();\n    this.typesenseIndex?.close();\n  }\n}\n"],
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No-op when embeddings are disabled.\n   * Fails silently so callers can continue without semantic search.\n   * When config.useVecIndex is true, also initializes the sqlite-vec ANN index.\n   */\n  async initialize(onProgress?: (file: string, loaded: number, total: number, done: boolean) => void): Promise<void> {\n    if (!this.config.enableEmbeddings) {\n      logDebug('VectorManager: embeddings disabled');\n      return;\n    }\n    if (this._initialized) return;\n\n    const rawModel = this.config.embeddingModel || DEFAULT_MODEL;\n    // Guard against an invalid model ID (e.g. 'y' typed by mistake in the installer)\n    const modelId = rawModel.includes('/') ? rawModel : DEFAULT_MODEL;\n    if (rawModel !== modelId) {\n      logWarn(`VectorManager: invalid embeddingModel \"${rawModel}\", using default instead`, { default: DEFAULT_MODEL });\n    }\n    const cacheDir = GLOBAL_MODELS_DIR;\n\n    try {\n      const { pipeline, env } = await getTransformers();\n      env.cacheDir = cacheDir;\n\n      if (!fs.existsSync(cacheDir)) {\n        fs.mkdirSync(cacheDir, { recursive: true });\n      }\n\n      // Skip remote check if model already cached (HuggingFace uses '--' as path separator)\n      // HuggingFace transformers v3 stores models as <org>/<model>/ (v2 used <org>--<model>)\n      const cached = fs.existsSync(path.join(cacheDir, modelId));\n      if (cached) env.allowRemoteModels = false;\n\n      let lastFile = '';\n      this.pipeline = await pipeline('feature-extraction', modelId, {\n        dtype: 'auto',\n        ...(!cached && onProgress ? {\n          progress_callback: (p: { status: string; file?: string; loaded?: number; total?: number }) => {\n            if (p.status === 'progress' && p.file) {\n              lastFile = p.file;\n              onProgress(p.file, p.loaded ?? 0, p.total ?? 0, false);\n            } else if (p.status === 'done' && lastFile) {\n              onProgress(lastFile, 1, 1, true);\n              lastFile = '';\n            }\n          },\n        } : {}),\n      });\n\n      // Validate embeddingDim against the model's actual output shape.\n      // Run a single test embedding and compare dims[1] to config.embeddingDim.\n      // If they differ, warn and update the runtime dim so downstream engines\n      // are initialised with the correct size (config.json is not rewritten here).\n      try {\n        const testOut = await this.pipeline('test', { pooling: 'mean', normalize: true });\n        const actualDim: number = testOut.dims?.[1] ?? (testOut.data?.length as number);\n        const configuredDim = this.config.embeddingDim ?? DEFAULT_EMBEDDING_DIM;\n        if (actualDim && actualDim !== configuredDim) {\n          logWarn(\n            `VectorManager: embeddingDim mismatch \u2014 config says ${configuredDim} but model outputs ${actualDim}. Using actual dim.`,\n            { model: modelId, configuredDim, actualDim },\n          );\n          // Patch the runtime config so all engine constructors below use the correct dim\n          (this.config as unknown as Record<string, unknown>).embeddingDim = actualDim;\n        }\n      } catch { /* test embedding failed \u2014 proceed with configured dim */ }\n\n      this._initialized = true;\n      logDebug('VectorManager: model loaded', { modelId, embeddingDim: this.config.embeddingDim ?? DEFAULT_EMBEDDING_DIM });\n    } catch (err) {\n      logError('VectorManager: failed to load embedding model', {\n        model: modelId,\n        error: String(err),\n      });\n      this._initialized = false;\n      return;\n    }\n\n    // Initialize the selected search engine\n    const engine = this.config.semanticEngine ?? (this.config.useVecIndex ? 'sqlite-vec' : 'cosine');\n\n    if (this.projectRoot && engine !== 'cosine') {\n      const kirographDir = path.join(this.projectRoot, '.kirograph');\n\n      const embeddingDim = this.config.embeddingDim ?? DEFAULT_EMBEDDING_DIM;\n\n    if (engine === 'sqlite-vec') {\n        this.vecIndex = new VecIndex(kirographDir, embeddingDim);\n        await this.vecIndex.initialize();\n        if (this.vecIndex.isAvailable()) {\n          logDebug('VectorManager: sqlite-vec ANN index ready');\n        } else {\n          this._engineFallback = 'sqlite-vec unavailable \u2014 run: npm install better-sqlite3 sqlite-vec';\n          logDebug('VectorManager: sqlite-vec unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'orama') {\n        this.oramaIndex = new OramaIndex(kirographDir, embeddingDim);\n        await this.oramaIndex.initialize();\n        if (this.oramaIndex.isAvailable()) {\n          logDebug('VectorManager: Orama hybrid index ready');\n        } else {\n          this._engineFallback = 'orama unavailable \u2014 run: npm install @orama/orama @orama/plugin-data-persistence';\n          logDebug('VectorManager: Orama unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'pglite') {\n        this.pgliteIndex = new PGliteIndex(kirographDir, embeddingDim);\n        await this.pgliteIndex.initialize();\n        if (this.pgliteIndex.isAvailable()) {\n          logDebug('VectorManager: PGlite+pgvector hybrid index ready');\n        } else {\n          this._engineFallback = 'pglite unavailable \u2014 run: npm install @electric-sql/pglite';\n          logDebug('VectorManager: PGlite unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'lancedb') {\n        this.lancedbIndex = new LanceDBIndex(kirographDir, embeddingDim);\n        await this.lancedbIndex.initialize();\n        if (this.lancedbIndex.isAvailable()) {\n          logDebug('VectorManager: LanceDB ANN index ready');\n        } else {\n          this._engineFallback = 'lancedb unavailable \u2014 run: npm install @lancedb/lancedb';\n          logDebug('VectorManager: LanceDB unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'qdrant') {\n        this.qdrantIndex = new QdrantIndex(kirographDir, embeddingDim);\n        await this.qdrantIndex.initialize();\n        if (this.qdrantIndex.isAvailable()) {\n          logDebug('VectorManager: Qdrant ANN index ready');\n        } else {\n          this._engineFallback = 'qdrant unavailable \u2014 run: npm install qdrant-local';\n          logDebug('VectorManager: Qdrant unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'typesense') {\n        this.typesenseIndex = new TypesenseIndex(kirographDir, embeddingDim);\n        await this.typesenseIndex.initialize();\n        if (this.typesenseIndex.isAvailable()) {\n          logDebug('VectorManager: Typesense ANN index ready');\n        } else {\n          const reason = this.typesenseIndex.getFailReason();\n          this._engineFallback = reason\n            ? `typesense initialization failed: ${reason}`\n            : 'typesense unavailable \u2014 run: npm install typesense';\n          logDebug('VectorManager: Typesense unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'turboquant') {\n        const bits = this.config.turboquantBits ?? 3;\n        this.turboquantIndex = new TurboQuantIndex(kirographDir, 'turboquant.bin', embeddingDim, bits);\n        await this.turboquantIndex.initialize();\n        if (this.turboquantIndex.isAvailable()) {\n          logDebug('VectorManager: TurboQuant ANN index ready', { bits });\n        } else {\n          this._engineFallback = 'turboquant unavailable \u2014 run: npm install turboquant-js';\n          logDebug('VectorManager: TurboQuant unavailable, falling back to in-process cosine');\n        }\n      } else if (engine === 'turbovec') {\n        const bits = this.config.turbovecBits ?? 4;\n        this.turbovecIndex = new TurboVecIndex(kirographDir, 'turbovec.tvim', embeddingDim, bits);\n        await this.turbovecIndex.initialize();\n        if (this.turbovecIndex.isAvailable()) {\n          logDebug('VectorManager: TurboVec ANN index ready', { bits });\n        } else {\n          this._engineFallback = 'turbovec unavailable \u2014 build it: cd native/turbovec-node && npm install && npm run build';\n          logDebug('VectorManager: TurboVec unavailable, falling back to in-process cosine');\n        }\n      }\n    }\n  }\n\n  /**\n   * Embed a single node and persist to the vectors table.\n   * Skips silently when disabled; logs on failure without throwing.\n   */\n  async embedNode(node: Node): Promise<void> {\n    if (!this.config.enableEmbeddings) return;\n    if (!this._initialized || !this.pipeline) {\n      logError('Embedding model unavailable', { model: this.config.embeddingModel });\n      return;\n    }\n    if (!EMBEDDABLE_KINDS.has(node.kind)) return;\n\n    try {\n      const text = `search_document: ${nodeToText(node)}`;\n      const output = await this.pipeline(text, { pooling: 'mean', normalize: true });\n      const embedding = toFloat32Array(output.data);\n      // non-cosine engines are sole stores of record when active \u2014 skip the SQLite vectors table\n      if (!this.vecIndex?.isAvailable() && !this.oramaIndex?.isAvailable() && !this.pgliteIndex?.isAvailable() && !this.lancedbIndex?.isAvailable() && !this.qdrantIndex?.isAvailable() && !this.typesenseIndex?.isAvailable() && !this.turboquantIndex?.isAvailable() && !this.turbovecIndex?.isAvailable()) {\n        this.db.storeEmbedding(node.id, embedding, this.config.embeddingModel || DEFAULT_MODEL);\n      }\n      this.vecIndex?.upsert(node.id, embedding);\n      if (this.oramaIndex?.isAvailable()) await this.oramaIndex.upsert(node, embedding);\n      if (this.pgliteIndex?.isAvailable()) await this.pgliteIndex.upsert(node, embedding);\n      if (this.lancedbIndex?.isAvailable()) await this.lancedbIndex.upsert(node, embedding);\n      if (this.qdrantIndex?.isAvailable()) await this.qdrantIndex.upsert(node, embedding);\n      if (this.typesenseIndex?.isAvailable()) await this.typesenseIndex.upsert(node, embedding);\n      this.turboquantIndex?.upsert(node.id, embedding);\n      this.turbovecIndex?.upsert(node.id, embedding);\n    } catch (err) {\n      logWarn('Failed to embed node', { nodeId: node.id, error: String(err) });\n    }\n  }\n\n  /** Number of entries currently in the active ANN/hybrid index (0 when not in use). */\n  async vecIndexCount(): Promise<number> {\n    if (this.turbovecIndex?.isAvailable()) return this.turbovecIndex.count();\n    if (this.turboquantIndex?.isAvailable()) return this.turboquantIndex.count();\n    if (this.vecIndex?.isAvailable()) return this.vecIndex.count();\n    if (this.oramaIndex?.isAvailable()) return this.oramaIndex.count();\n    if (this.pgliteIndex?.isAvailable()) return this.pgliteIndex.count();\n    if (this.lancedbIndex?.isAvailable()) return this.lancedbIndex.count();\n    if (this.qdrantIndex?.isAvailable()) return this.qdrantIndex.count();\n    if (this.typesenseIndex?.isAvailable()) return this.typesenseIndex.count();\n    return 0;\n  }\n\n  /**\n   * Remove embeddings for the given node IDs from the active index.\n   * For cosine the `vectors` SQLite table is cleaned up automatically via FK cascade\n   * when nodes are deleted. For sqlite-vec, orama, and pglite the engine itself is\n   * the sole store of record, so we delete from it explicitly here.\n   */\n  async deleteEmbeddings(nodeIds: string[]): Promise<void> {\n    for (const id of nodeIds) {\n      this.vecIndex?.delete(id);\n      if (this.oramaIndex?.isAvailable()) await this.oramaIndex.delete(id);\n      if (this.pgliteIndex?.isAvailable()) await this.pgliteIndex.delete(id);\n      if (this.lancedbIndex?.isAvailable()) await this.lancedbIndex.delete(id);\n      if (this.qdrantIndex?.isAvailable()) await this.qdrantIndex.delete(id);\n      if (this.typesenseIndex?.isAvailable()) await this.typesenseIndex.delete(id);\n      this.turboquantIndex?.delete(id);\n      this.turbovecIndex?.delete(id);\n    }\n  }\n\n  /**\n   * Embed all eligible nodes in the database that don't yet have embeddings.\n   * Streams nodes in pages to avoid loading the entire node set into memory \u2014\n   * critical for large codebases (100K+ symbols) where a single getAllNodes()\n   * call can exhaust the Node.js heap or the WASM linear memory.\n   *\n   * Uses dynamic batch sizing: starts at BATCH_SIZE, halves on OOM errors,\n   * and recovers back to full size after successful batches.\n   *\n   * Emits a pre-flight warning via onProgress when the embeddable node count\n   * exceeds LARGE_CODEBASE_THRESHOLD so the CLI can surface it to the user.\n   */\n  async embedAll(onProgress?: (current: number, total: number) => void): Promise<number> {\n    if (!this.isInitialized() || !this.pipeline) return 0;\n\n    const modelId = this.config.embeddingModel || DEFAULT_MODEL;\n    const EMBEDDABLE_KINDS_ARRAY = [...EMBEDDABLE_KINDS] as string[];\n\n    // Pre-flight: count embeddable nodes without loading them\n    const totalEmbeddable = this.db.countEmbeddableNodes(EMBEDDABLE_KINDS_ARRAY);\n    const LARGE_CODEBASE_THRESHOLD = 100_000;\n    if (totalEmbeddable > LARGE_CODEBASE_THRESHOLD) {\n      // Signal the large-codebase warning via a special progress event.\n      // current=-1 is the sentinel; the CLI renderer checks for it.\n      onProgress?.(-1, totalEmbeddable);\n    }\n\n    // Collect already-embedded IDs (needed to skip nodes already in the index)\n    const existingIds = new Set(\n      this.typesenseIndex?.isAvailable()\n        ? await this.typesenseIndex.getEmbeddedNodeIds()\n        : this.qdrantIndex?.isAvailable()\n        ? await this.qdrantIndex.getEmbeddedNodeIds()\n        : this.lancedbIndex?.isAvailable()\n        ? await this.lancedbIndex.getEmbeddedNodeIds()\n        : this.pgliteIndex?.isAvailable()\n          ? await this.pgliteIndex.getEmbeddedNodeIds()\n          : this.oramaIndex?.isAvailable()\n            ? await this.oramaIndex.getEmbeddedNodeIds()\n            : this.turbovecIndex?.isAvailable()\n              ? this.turbovecIndex.getEmbeddedIds()\n              : this.turboquantIndex?.isAvailable()\n              ? this.turboquantIndex.getEmbeddedIds()\n              : this.vecIndex?.isAvailable()\n                ? this.vecIndex.getEmbeddedNodeIds()\n                : this.db.getEmbeddedNodeIds()\n    );\n\n    // Stream nodes in pages \u2014 never hold more than PAGE_SIZE nodes in memory at once\n    const PAGE_SIZE = 2000;\n    let pageOffset = 0;\n    let processed = 0;\n    let currentBatchSize = BATCH_SIZE;\n    let consecutiveSuccesses = 0;\n\n    // We need to know the total pending count for progress reporting.\n    // Approximate: totalEmbeddable - existingIds.size (may be slightly off if\n    // existingIds contains IDs for non-embeddable kinds, but close enough).\n    const totalPending = Math.max(0, totalEmbeddable - existingIds.size);\n    if (totalPending === 0) {\n      if (this.oramaIndex?.isAvailable()) await this.oramaIndex.save();\n      return 0;\n    }\n\n    logDebug(`VectorManager: embedding ~${totalPending} nodes (${existingIds.size} already embedded, streaming in pages of ${PAGE_SIZE})`);\n\n    // Buffer of pending nodes from the current page\n    let pageBuffer: Node[] = [];\n    let pageBufferOffset = 0; // index within pageBuffer\n    let pageExhausted = false;\n\n    const fetchNextPage = () => {\n      const page = this.db.getEmbeddableNodesPaged(EMBEDDABLE_KINDS_ARRAY, PAGE_SIZE, pageOffset);\n      pageOffset += page.length;\n      pageBuffer = page.filter(n => !existingIds.has(n.id));\n      pageBufferOffset = 0;\n      if (page.length < PAGE_SIZE) pageExhausted = true;\n    };\n\n    fetchNextPage();\n\n    while (pageBuffer.length > 0 || (!pageExhausted && pageBufferOffset >= pageBuffer.length)) {\n      // Refill page buffer when exhausted\n      if (pageBufferOffset >= pageBuffer.length) {\n        if (pageExhausted) break;\n        fetchNextPage();\n        if (pageBuffer.length === 0) break;\n      }\n\n      // Slice a batch from the current page buffer\n      const batch = pageBuffer.slice(pageBufferOffset, pageBufferOffset + currentBatchSize);\n      if (batch.length === 0) break;\n\n      const texts = batch.map(n => `search_document: ${nodeToText(n)}`);\n\n      try {\n        const outputs = await this.pipeline(texts, { pooling: 'mean', normalize: true });\n        const dims: number[] = outputs.dims;\n        const dim = dims[1] ?? (this.config.embeddingDim ?? DEFAULT_EMBEDDING_DIM);\n        const flat = toFloat32Array(outputs.data);\n\n        const tsNodes: Node[] = [];\n        const tsEmbeddings: Float32Array[] = [];\n        const qdNodes: Node[] = [];\n        const qdEmbeddings: Float32Array[] = [];\n\n        for (let j = 0; j < batch.length; j++) {\n          const node = batch[j]!;\n          const embedding = flat.slice(j * dim, (j + 1) * dim);\n          if (!this.vecIndex?.isAvailable() && !this.oramaIndex?.isAvailable() && !this.pgliteIndex?.isAvailable() && !this.lancedbIndex?.isAvailable() && !this.qdrantIndex?.isAvailable() && !this.typesenseIndex?.isAvailable() && !this.turboquantIndex?.isAvailable() && !this.turbovecIndex?.isAvailable()) {\n            this.db.storeEmbedding(node.id, embedding, modelId);\n          }\n          this.vecIndex?.upsert(node.id, embedding);\n          if (this.oramaIndex?.isAvailable()) await this.oramaIndex.upsert(node, embedding);\n          if (this.pgliteIndex?.isAvailable()) await this.pgliteIndex.upsert(node, embedding);\n          if (this.lancedbIndex?.isAvailable()) await this.lancedbIndex.upsert(node, embedding);\n          if (this.qdrantIndex?.isAvailable()) { qdNodes.push(node); qdEmbeddings.push(embedding); }\n          if (this.typesenseIndex?.isAvailable()) { tsNodes.push(node); tsEmbeddings.push(embedding); }\n          this.turboquantIndex?.upsert(node.id, embedding);\n          this.turbovecIndex?.upsert(node.id, embedding);\n        }\n\n        if (qdNodes.length > 0) await this.qdrantIndex!.bulkUpsert(qdNodes, qdEmbeddings);\n        if (tsNodes.length > 0) await this.typesenseIndex!.bulkUpsert(tsNodes, tsEmbeddings);\n\n        pageBufferOffset += batch.length;\n        processed += batch.length;\n        consecutiveSuccesses++;\n\n        if (currentBatchSize < BATCH_SIZE && consecutiveSuccesses >= 5) {\n          currentBatchSize = Math.min(currentBatchSize * 2, BATCH_SIZE);\n          logDebug(`VectorManager: batch size recovered to ${currentBatchSize}`);\n          consecutiveSuccesses = 0;\n        }\n      } catch (err) {\n        const errMsg = String(err);\n        const isOOM = errMsg.includes('bad allocation') || errMsg.includes('OOM') || errMsg.includes('out of memory');\n\n        if (isOOM && currentBatchSize > MIN_BATCH_SIZE) {\n          currentBatchSize = Math.max(Math.floor(currentBatchSize / 2), MIN_BATCH_SIZE);\n          consecutiveSuccesses = 0;\n          logWarn(`VectorManager: OOM at batch offset ${pageBufferOffset} \u2014 reducing batch size to ${currentBatchSize} and retrying`, {\n            batchSize: currentBatchSize,\n            nodeIds: batch.slice(0, 3).map(n => n.id),\n          });\n          // Don't advance pageBufferOffset \u2014 retry the same batch\n        } else if (isOOM && currentBatchSize <= MIN_BATCH_SIZE) {\n          logError(`VectorManager: OOM even at minimum batch size ${MIN_BATCH_SIZE} \u2014 skipping ${batch.length} nodes`, {\n            batchStart: pageBufferOffset,\n            skippedNodes: batch.map(n => `${n.kind}:${n.name} (${n.filePath})`).slice(0, 5),\n          });\n          pageBufferOffset += batch.length;\n          processed += batch.length;\n          consecutiveSuccesses = 0;\n        } else {\n          logWarn(`VectorManager: batch embedding failed at offset ${pageBufferOffset}`, {\n            batchSize: currentBatchSize,\n            error: errMsg,\n          });\n          pageBufferOffset += batch.length;\n          processed += batch.length;\n          consecutiveSuccesses = 0;\n        }\n      }\n\n      onProgress?.(processed, totalPending);\n    }\n\n    if (this.oramaIndex?.isAvailable()) await this.oramaIndex.save();\n\n    if (this.turboquantIndex?.isAvailable()) {\n      await this.turboquantIndex.save();\n      if (this.projectRoot) {\n        const kirographDir = path.join(this.projectRoot, '.kirograph');\n        const stats = this.turboquantIndex.memoryStats();\n        const count = this.turboquantIndex.count();\n        const dim = this.config.embeddingDim ?? DEFAULT_EMBEDDING_DIM;\n        const rawBytes = count * dim * 4;\n        writeTurboQuantStats(kirographDir, {\n          count,\n          dim,\n          bits: this.config.turboquantBits ?? 3,\n          compressionRatio: stats.compressionRatio,\n          actualBytes: stats.actualBytes,\n          rawBytes,\n          savedBytes: rawBytes - stats.actualBytes,\n        });\n      }\n    }\n\n    if (this.turbovecIndex?.isAvailable()) {\n      await this.turbovecIndex.save();\n      logDebug('VectorManager: TurboVec index saved', {\n        count: this.turbovecIndex.count(),\n        bits: this.config.turbovecBits ?? 4,\n      });\n    }\n\n    logDebug(`VectorManager: embedding complete \u2014 ${processed} processed, final batch size: ${currentBatchSize}`);\n\n    return processed;\n  }\n\n  /**\n   * Semantic search: embed the query and return top-N nodes by similarity.\n   *\n   * When sqlite-vec is available (useVecIndex: true), delegates ANN search to\n   * VecIndex (fast, sub-linear). Otherwise falls back to in-process cosine\n   * similarity over all stored embeddings (linear scan, no extra deps).\n   *\n   * Returns empty array when not initialized.\n   */\n  async search(query: string, topN = 10): Promise<Node[]> {\n    if (!this.isInitialized() || !this.pipeline) return [];\n\n    try {\n      const text = `search_query: ${query}`;\n      const output = await this.pipeline(text, { pooling: 'mean', normalize: true });\n      const queryVec = toFloat32Array(output.data);\n\n      let nodeIds: string[];\n\n      if (this.pgliteIndex?.isAvailable()) {\n        // Hybrid search via PGlite+pgvector \u2014 exact vector + full-text in one SQL query\n        nodeIds = await this.pgliteIndex.search(query, queryVec, topN);\n      } else if (this.oramaIndex?.isAvailable()) {\n        // Hybrid search via Orama \u2014 full-text + vector combined\n        nodeIds = await this.oramaIndex.search(query, queryVec, topN);\n      } else if (this.lancedbIndex?.isAvailable()) {\n        // ANN search via LanceDB \u2014 columnar Lance format, cosine metric\n        nodeIds = await this.lancedbIndex.search(queryVec, topN);\n      } else if (this.qdrantIndex?.isAvailable()) {\n        // ANN search via Qdrant \u2014 HNSW index, cosine metric\n        nodeIds = await this.qdrantIndex.search(queryVec, topN);\n      } else if (this.typesenseIndex?.isAvailable()) {\n        // ANN search via Typesense \u2014 HNSW index, cosine metric\n        nodeIds = await this.typesenseIndex.search(queryVec, topN);\n      } else if (this.turbovecIndex?.isAvailable()) {\n        // ANN search via TurboVec \u2014 Rust/SIMD NEON+AVX-512 quantized index\n        nodeIds = this.turbovecIndex.search(queryVec, topN);\n      } else if (this.turboquantIndex?.isAvailable()) {\n        // ANN search via TurboQuant \u2014 compressed in-memory index, zero native deps\n        nodeIds = this.turboquantIndex.search(queryVec, topN);\n      } else if (this.vecIndex?.isAvailable()) {\n        // ANN search via sqlite-vec \u2014 fast, sub-linear\n        nodeIds = this.vecIndex.search(queryVec, topN);\n      } else {\n        // In-process cosine similarity \u2014 linear scan over all stored embeddings\n        const allEmbeddings = this.db.getAllEmbeddings();\n        nodeIds = allEmbeddings\n          .map(({ nodeId, embedding }) => ({ nodeId, score: cosine(queryVec, embedding) }))\n          .filter(r => r.score >= 0.3)\n          .sort((a, b) => b.score - a.score)\n          .slice(0, topN)\n          .map(r => r.nodeId);\n      }\n\n      const results: Node[] = [];\n      for (const nodeId of nodeIds) {\n        const node = this.db.getNode(nodeId);\n        if (node) results.push(node);\n      }\n      return results;\n    } catch (err) {\n      logWarn('VectorManager: search failed', { error: String(err) });\n      return [];\n    }\n  }\n\n  /** Release engine resources (e.g. kill Qdrant child process). */\n  close(): void {\n    this.qdrantIndex?.close();\n    this.typesenseIndex?.close();\n    this.turbovecIndex?.close();\n  }\n}\n"],
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   "names": []
 }

package/dist/vectors/turbovec-index.js

@@ -0,0 +1,189 @@
+"use strict";
+var __create = Object.create;
+var __defProp = Object.defineProperty;
+var __getOwnPropDesc = Object.getOwnPropertyDescriptor;
+var __getOwnPropNames = Object.getOwnPropertyNames;
+var __getProtoOf = Object.getPrototypeOf;
+var __hasOwnProp = Object.prototype.hasOwnProperty;
+var __export = (target, all) => {
+  for (var name in all)
+    __defProp(target, name, { get: all[name], enumerable: true });
+};
+var __copyProps = (to, from, except, desc) => {
+  if (from && typeof from === "object" || typeof from === "function") {
+    for (let key of __getOwnPropNames(from))
+      if (!__hasOwnProp.call(to, key) && key !== except)
+        __defProp(to, key, { get: () => from[key], enumerable: !(desc = __getOwnPropDesc(from, key)) || desc.enumerable });
+  }
+  return to;
+};
+var __toESM = (mod, isNodeMode, target) => (target = mod != null ? __create(__getProtoOf(mod)) : {}, __copyProps(
+  // If the importer is in node compatibility mode or this is not an ESM
+  // file that has been converted to a CommonJS file using a Babel-
+  // compatible transform (i.e. "__esModule" has not been set), then set
+  // "default" to the CommonJS "module.exports" for node compatibility.
+  isNodeMode || !mod || !mod.__esModule ? __defProp(target, "default", { value: mod, enumerable: true }) : target,
+  mod
+));
+var __toCommonJS = (mod) => __copyProps(__defProp({}, "__esModule", { value: true }), mod);
+var turbovec_index_exports = {};
+__export(turbovec_index_exports, {
+  TurboVecIndex: () => TurboVecIndex
+});
+module.exports = __toCommonJS(turbovec_index_exports);
+var path = __toESM(require("path"));
+var fs = __toESM(require("fs"));
+var import_errors = require("../errors");
+class TurboVecIndex {
+  constructor(kirographDir, binName, dim, bits = 4) {
+    this.kirographDir = kirographDir;
+    this.binName = binName;
+    this.dim = dim;
+    this.bits = bits;
+    this.index = null;
+    this._available = false;
+  }
+  isAvailable() {
+    return this._available;
+  }
+  /**
+   * Load the native addon and restore the index from disk if the bin file
+   * exists.  Silent no-op when the addon is not built.
+   */
+  async initialize() {
+    if (this._available) return;
+    let TVModule;
+    try {
+      TVModule = require("turbovec-node");
+    } catch {
+      (0, import_errors.logDebug)("TurboVecIndex: turbovec-node not found \u2014 run: cd native/turbovec-node && npm install && npm run build");
+      return;
+    }
+    const TurboVecIndexClass = TVModule?.TurboVecIndex ?? TVModule?.default?.TurboVecIndex ?? null;
+    if (!TurboVecIndexClass || typeof TurboVecIndexClass !== "function") {
+      (0, import_errors.logWarn)("TurboVecIndex: unrecognised turbovec-node module shape \u2014 turbovec engine unavailable");
+      return;
+    }
+    if (this.dim <= 0 || this.dim % 8 !== 0) {
+      (0, import_errors.logWarn)("TurboVecIndex: dim must be a positive multiple of 8", { dim: this.dim });
+      return;
+    }
+    const binPath = path.join(this.kirographDir, this.binName);
+    try {
+      if (fs.existsSync(binPath) && typeof TurboVecIndexClass.load === "function") {
+        this.index = TurboVecIndexClass.load(binPath);
+        (0, import_errors.logDebug)("TurboVecIndex: restored from disk", { binPath });
+      } else {
+        this.index = new TurboVecIndexClass(this.dim, this.bits);
+        (0, import_errors.logDebug)("TurboVecIndex: new index", { dim: this.dim, bits: this.bits });
+      }
+      this._available = true;
+    } catch (err) {
+      (0, import_errors.logError)("TurboVecIndex: initialization failed", { error: String(err) });
+      this._available = false;
+      this.index = null;
+    }
+  }
+  /** Insert or update a vector. */
+  upsert(id, vec) {
+    if (!this._available || !this.index) return;
+    try {
+      this.index.add(id, vec);
+    } catch (err) {
+      (0, import_errors.logWarn)("TurboVecIndex: upsert failed", { id, error: String(err) });
+    }
+  }
+  /** Remove a vector from the index. */
+  delete(id) {
+    if (!this._available || !this.index) return;
+    try {
+      this.index.remove(id);
+    } catch (err) {
+      (0, import_errors.logWarn)("TurboVecIndex: delete failed", { id, error: String(err) });
+    }
+  }
+  /** ANN search — returns IDs sorted by descending similarity. */
+  search(queryVec, topN = 10) {
+    return this.searchWithScores(queryVec, topN).map((r) => r.id);
+  }
+  /** ANN search — returns [{id, score}] sorted by descending similarity. */
+  searchWithScores(queryVec, topN = 10) {
+    if (!this._available || !this.index) return [];
+    try {
+      const results = this.index.search(queryVec, topN);
+      return results.slice(0, topN);
+    } catch (err) {
+      (0, import_errors.logWarn)("TurboVecIndex: search failed", { error: String(err) });
+      return [];
+    }
+  }
+  /**
+   * Persist the index to disk atomically.
+   * Saves `<binName>` (turbovec binary) and `<binName>.ids` (JSON string-ID sidecar).
+   */
+  async save() {
+    if (!this._available || !this.index) return;
+    const binPath = path.join(this.kirographDir, this.binName);
+    const tmpBin = binPath + ".tmp";
+    try {
+      this.index.save(tmpBin);
+      if (fs.existsSync(tmpBin)) {
+        fs.renameSync(tmpBin, binPath);
+      }
+      const tmpIds = tmpBin + ".ids";
+      if (fs.existsSync(tmpIds)) {
+        fs.renameSync(tmpIds, binPath + ".ids");
+      }
+      (0, import_errors.logDebug)("TurboVecIndex: saved", { binPath });
+    } catch (err) {
+      (0, import_errors.logWarn)("TurboVecIndex: save failed", { error: String(err) });
+      for (const f of [tmpBin, tmpBin + ".ids"]) {
+        try {
+          fs.unlinkSync(f);
+        } catch {
+        }
+      }
+    }
+  }
+  /** Compression stats (formula-based, mirrors turboquant-index.ts). */
+  memoryStats() {
+    const n = this.count();
+    const rawBytes = n * this.dim * 4;
+    const actualBytes = Math.ceil(n * this.dim * this.bits / 8);
+    return {
+      totalBits: actualBytes * 8,
+      bitsPerVector: this.bits * this.dim,
+      compressionRatio: actualBytes > 0 ? rawBytes / actualBytes : 1,
+      actualBytes
+    };
+  }
+  count() {
+    if (!this._available || !this.index) return 0;
+    try {
+      return typeof this.index.len === "function" ? this.index.len() : 0;
+    } catch {
+      return 0;
+    }
+  }
+  getEmbeddedIds() {
+    if (!this._available || !this.index) return [];
+    try {
+      return typeof this.index.getIds === "function" ? this.index.getIds() : [];
+    } catch {
+      return [];
+    }
+  }
+  close() {
+    try {
+      this.index?.close();
+    } catch {
+    }
+    this.index = null;
+    this._available = false;
+  }
+}
+// Annotate the CommonJS export names for ESM import in node:
+0 && (module.exports = {
+  TurboVecIndex
+});
+//# sourceMappingURL=turbovec-index.js.map

package/dist/vectors/turbovec-index.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../../src/vectors/turbovec-index.ts"],
+  "sourcesContent": ["/**\n * KiroGraph TurboVec ANN Index\n *\n * Wraps turbovec-node (napi-rs bindings for RyanCodrai/turbovec) as a\n * drop-in ANN index.  Uses the same TurboQuant algorithm as turboquant-js\n * but backed by a Rust/SIMD implementation \u2014 NEON on ARM, AVX-512BW on\n * x86 \u2014 and supports 2, 3, or 4 bits per coordinate.\n *\n * Build the native addon once before use:\n *   cd native/turbovec-node && npm install && npm run build\n *\n * Requires: Rust toolchain (rustup), plus openblas on Linux.\n * On macOS the Accelerate framework is used automatically (no extra dep).\n *\n * Falls back silently to cosine if turbovec-node is not built/installed.\n *\n * dim constraint: must be a positive multiple of 8 (768 \u2713, 384 \u2713).\n * bit_width: 2 (highest compression), 3 (balanced), 4 (highest quality).\n *\n * Upstream: https://github.com/RyanCodrai/turbovec\n */\n\nimport * as path from 'path';\nimport * as fs from 'fs';\nimport { logDebug, logWarn, logError } from '../errors';\n\n// \u2500\u2500 TurboVecIndex \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport class TurboVecIndex {\n  private index: any = null;\n  private _available = false;\n\n  constructor(\n    private readonly kirographDir: string,\n    private readonly binName: string,\n    private readonly dim: number,\n    private readonly bits: number = 4,\n  ) {}\n\n  isAvailable(): boolean {\n    return this._available;\n  }\n\n  /**\n   * Load the native addon and restore the index from disk if the bin file\n   * exists.  Silent no-op when the addon is not built.\n   */\n  async initialize(): Promise<void> {\n    if (this._available) return;\n\n    let TVModule: any;\n    try {\n      // eslint-disable-next-line @typescript-eslint/no-require-imports\n      TVModule = require('turbovec-node');\n    } catch {\n      logDebug('TurboVecIndex: turbovec-node not found \u2014 run: cd native/turbovec-node && npm install && npm run build');\n      return;\n    }\n\n    const TurboVecIndexClass =\n      TVModule?.TurboVecIndex ??\n      TVModule?.default?.TurboVecIndex ??\n      null;\n\n    if (!TurboVecIndexClass || typeof TurboVecIndexClass !== 'function') {\n      logWarn('TurboVecIndex: unrecognised turbovec-node module shape \u2014 turbovec engine unavailable');\n      return;\n    }\n\n    // turbovec requires dim to be a positive multiple of 8\n    if (this.dim <= 0 || this.dim % 8 !== 0) {\n      logWarn('TurboVecIndex: dim must be a positive multiple of 8', { dim: this.dim });\n      return;\n    }\n\n    const binPath = path.join(this.kirographDir, this.binName);\n\n    try {\n      if (fs.existsSync(binPath) && typeof TurboVecIndexClass.load === 'function') {\n        this.index = TurboVecIndexClass.load(binPath);\n        logDebug('TurboVecIndex: restored from disk', { binPath });\n      } else {\n        this.index = new TurboVecIndexClass(this.dim, this.bits);\n        logDebug('TurboVecIndex: new index', { dim: this.dim, bits: this.bits });\n      }\n      this._available = true;\n    } catch (err) {\n      logError('TurboVecIndex: initialization failed', { error: String(err) });\n      this._available = false;\n      this.index = null;\n    }\n  }\n\n  /** Insert or update a vector. */\n  upsert(id: string, vec: Float32Array): void {\n    if (!this._available || !this.index) return;\n    try {\n      this.index.add(id, vec);\n    } catch (err) {\n      logWarn('TurboVecIndex: upsert failed', { id, error: String(err) });\n    }\n  }\n\n  /** Remove a vector from the index. */\n  delete(id: string): void {\n    if (!this._available || !this.index) return;\n    try {\n      this.index.remove(id);\n    } catch (err) {\n      logWarn('TurboVecIndex: delete failed', { id, error: String(err) });\n    }\n  }\n\n  /** ANN search \u2014 returns IDs sorted by descending similarity. */\n  search(queryVec: Float32Array, topN = 10): string[] {\n    return this.searchWithScores(queryVec, topN).map(r => r.id);\n  }\n\n  /** ANN search \u2014 returns [{id, score}] sorted by descending similarity. */\n  searchWithScores(queryVec: Float32Array, topN = 10): Array<{ id: string; score: number }> {\n    if (!this._available || !this.index) return [];\n    try {\n      const results: Array<{ id: string; score: number }> = this.index.search(queryVec, topN);\n      return results.slice(0, topN);\n    } catch (err) {\n      logWarn('TurboVecIndex: search failed', { error: String(err) });\n      return [];\n    }\n  }\n\n  /**\n   * Persist the index to disk atomically.\n   * Saves `<binName>` (turbovec binary) and `<binName>.ids` (JSON string-ID sidecar).\n   */\n  async save(): Promise<void> {\n    if (!this._available || !this.index) return;\n\n    const binPath = path.join(this.kirographDir, this.binName);\n    const tmpBin = binPath + '.tmp';\n\n    try {\n      this.index.save(tmpBin);\n      // Rust saves to `tmpBin` and `tmpBin + \".ids\"` \u2014 atomically rename both\n      if (fs.existsSync(tmpBin)) {\n        fs.renameSync(tmpBin, binPath);\n      }\n      const tmpIds = tmpBin + '.ids';\n      if (fs.existsSync(tmpIds)) {\n        fs.renameSync(tmpIds, binPath + '.ids');\n      }\n      logDebug('TurboVecIndex: saved', { binPath });\n    } catch (err) {\n      logWarn('TurboVecIndex: save failed', { error: String(err) });\n      for (const f of [tmpBin, tmpBin + '.ids']) {\n        try { fs.unlinkSync(f); } catch { /* ignore */ }\n      }\n    }\n  }\n\n  /** Compression stats (formula-based, mirrors turboquant-index.ts). */\n  memoryStats(): { totalBits: number; bitsPerVector: number; compressionRatio: number; actualBytes: number } {\n    const n = this.count();\n    const rawBytes = n * this.dim * 4;\n    const actualBytes = Math.ceil(n * this.dim * this.bits / 8);\n    return {\n      totalBits: actualBytes * 8,\n      bitsPerVector: this.bits * this.dim,\n      compressionRatio: actualBytes > 0 ? rawBytes / actualBytes : 1,\n      actualBytes,\n    };\n  }\n\n  count(): number {\n    if (!this._available || !this.index) return 0;\n    try {\n      return typeof this.index.len === 'function' ? (this.index.len() as number) : 0;\n    } catch { return 0; }\n  }\n\n  getEmbeddedIds(): string[] {\n    if (!this._available || !this.index) return [];\n    try {\n      return typeof this.index.getIds === 'function' ? (this.index.getIds() as string[]) : [];\n    } catch { return []; }\n  }\n\n  close(): void {\n    try { this.index?.close(); } catch { /* ignore */ }\n    this.index = null;\n    this._available = false;\n  }\n}\n"],
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+  "names": []
+}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "kirograph",
-  "version": "0.20.1",
+  "version": "0.22.0",
   "description": "Semantic code knowledge graph for Kiro: fewer tool calls, instant symbol lookups, 100% local.",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
@@ -21,6 +21,9 @@
     "test:watchmen:skip-llm": "bash scripts/watchmen/test.sh --skip-llm",
     "test:patterns": "bash scripts/patterns/test.sh",
     "test:sec": "bash scripts/sec/test.sh",
+    "test:turboquant": "bash scripts/turboquant/test.sh",
+    "test:turbovec": "bash scripts/turbovec/test.sh",
+    "test:data": "bash scripts/data/test.sh",
     "clean": "node -e \"require('fs').rmSync('dist',{recursive:true,force:true})\"",
     "release": "./scripts/release.sh",
     "docs": "npx serve docs"
@@ -64,6 +67,7 @@
     "@ast-grep/lang-swift": "^0.0.8",
     "@ast-grep/napi": "^0.43.0",
     "@electric-sql/pglite": "^0.2.17",
+    "@firecrawl/pdf-inspector": "^1.9.5",
     "@lancedb/lancedb": "^0.27.2",
     "@orama/orama": "^3.1.18",
     "@orama/plugin-data-persistence": "^3.1.18",
@@ -71,6 +75,8 @@
     "better-sqlite3": "^11.10.0",
     "qdrant-local": "^0.0.0-alpha.10",
     "sqlite-vec": "^0.1.9",
+    "turboquant-js": "^0.2.0",
+    "turbovec-node": "file:native/turbovec-node",
     "typesense": "^3.0.6"
   },
   "devDependencies": {