kirograph 0.16.1 → 0.17.0

package/dist/compression/tracker.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/compression/tracker.ts"],
-  "sourcesContent": ["/**\n * KiroGraph Token Savings Tracker\n *\n * Records compression results to a local JSON file for analytics.\n * Uses a simple append-only JSON lines file to avoid SQLite dependency\n * in the compression module (keeps it lightweight and independent).\n */\n\nimport * as fs from 'fs';\nimport * as path from 'path';\nimport * as crypto from 'crypto';\nimport type { TokenSavingsRecord } from './types';\n\nconst TRACKER_DIR = '.kirograph';\nconst TRACKER_FILE = 'token-savings.jsonl';\nconst MAX_RECORDS = 5000; // Rotate after this many records\n\nexport interface GainStats {\n  totalCommands: number;\n  totalOriginal: number;\n  totalCompressed: number;\n  totalSaved: number;\n  savingsPercent: number;\n  byFamily: Record<string, { count: number; savings: number }>;\n  recentCommands: Array<{ command: string; savings: number; timestamp: number; source?: string }>;\n  /** Breakdown by source type */\n  bySource: {\n    exec: { count: number; saved: number };\n    graph: { count: number; saved: number };\n    memory: { count: number; saved: number };\n    docs: { count: number; saved: number };\n  };\n}\n\nexport class TokenTracker {\n  private filePath: string;\n  private sessionId: string;\n\n  constructor(projectRoot: string) {\n    const dir = path.join(projectRoot, TRACKER_DIR);\n    fs.mkdirSync(dir, { recursive: true });\n    this.filePath = path.join(dir, TRACKER_FILE);\n    this.sessionId = this.getOrCreateSessionId(dir);\n  }\n\n  private getOrCreateSessionId(dir: string): string {\n    const sessionFile = path.join(dir, '.session-id');\n    try {\n      const existing = fs.readFileSync(sessionFile, 'utf8').trim();\n      if (existing) return existing;\n    } catch { /* file doesn't exist */ }\n\n    const id = crypto.randomBytes(8).toString('hex');\n    try {\n      fs.writeFileSync(sessionFile, id, 'utf8');\n    } catch { /* ignore write errors */ }\n    return id;\n  }\n\n  /**\n   * Record a compression result.\n   */\n  record(command: string, originalTokens: number, compressedTokens: number, strategy: string, source: 'exec' | 'graph' | 'memory' | 'docs' = 'exec'): void {\n    const record: TokenSavingsRecord = {\n      timestamp: Date.now(),\n      command: command.slice(0, 200), // Truncate long commands\n      originalTokens,\n      compressedTokens,\n      strategy,\n      sessionId: this.sessionId,\n      source,\n    };\n\n    try {\n      fs.appendFileSync(this.filePath, JSON.stringify(record) + '\\n', 'utf8');\n      this.maybeRotate();\n    } catch {\n      // Non-critical \u2014 don't crash on tracking failure\n    }\n  }\n\n  /**\n   * Record a graph tool saving.\n   * @param toolName - The MCP tool that was called\n   * @param outputTokens - Actual tokens returned by the tool\n   * @param naiveCost - Estimated tokens the agent would have used without the tool\n   */\n  recordGraphSaving(toolName: string, outputTokens: number, naiveCost: number): void {\n    this.record(toolName, naiveCost, outputTokens, `graph:${toolName}`, 'graph');\n  }\n\n  /**\n   * Record a memory tool saving.\n   * @param toolName - The MCP tool that was called\n   * @param outputTokens - Actual tokens returned by the tool\n   * @param naiveCost - Estimated tokens the agent would have used without memory\n   */\n  recordMemorySaving(toolName: string, outputTokens: number, naiveCost: number): void {\n    this.record(toolName, naiveCost, outputTokens, `memory:${toolName}`, 'memory');\n  }\n\n  /**\n   * Record a docs tool saving.\n   * @param toolName - The MCP tool that was called\n   * @param outputTokens - Actual tokens returned by the tool\n   * @param naiveCost - Estimated tokens the agent would have used without docs indexing\n   */\n  recordDocsSaving(toolName: string, outputTokens: number, naiveCost: number): void {\n    this.record(toolName, naiveCost, outputTokens, `docs:${toolName}`, 'docs');\n  }\n\n  /**\n   * Get aggregated statistics for a time period.\n   */\n  getStats(period: 'session' | 'today' | 'week' | 'all'): GainStats {\n    const records = this.loadRecords(period);\n\n    if (records.length === 0) {\n      return {\n        totalCommands: 0,\n        totalOriginal: 0,\n        totalCompressed: 0,\n        totalSaved: 0,\n        savingsPercent: 0,\n        byFamily: {},\n        recentCommands: [],\n        bySource: { exec: { count: 0, saved: 0 }, graph: { count: 0, saved: 0 }, memory: { count: 0, saved: 0 }, docs: { count: 0, saved: 0 } },\n      };\n    }\n\n    let totalOriginal = 0;\n    let totalCompressed = 0;\n    const byFamily = new Map<string, { count: number; totalOriginal: number; totalCompressed: number }>();\n    const bySource = { exec: { count: 0, saved: 0 }, graph: { count: 0, saved: 0 }, memory: { count: 0, saved: 0 }, docs: { count: 0, saved: 0 } };\n\n    for (const r of records) {\n      totalOriginal += r.originalTokens;\n      totalCompressed += r.compressedTokens;\n\n      const family = this.extractFamily(r.strategy);\n      const existing = byFamily.get(family) || { count: 0, totalOriginal: 0, totalCompressed: 0 };\n      existing.count++;\n      existing.totalOriginal += r.originalTokens;\n      existing.totalCompressed += r.compressedTokens;\n      byFamily.set(family, existing);\n\n      const source = (r.source || 'exec') as 'exec' | 'graph' | 'memory' | 'docs';\n      if (bySource[source]) {\n        bySource[source].count++;\n        bySource[source].saved += r.originalTokens - r.compressedTokens;\n      } else {\n        bySource.exec.count++;\n        bySource.exec.saved += r.originalTokens - r.compressedTokens;\n      }\n    }\n\n    const totalSaved = totalOriginal - totalCompressed;\n    const savingsPercent = totalOriginal > 0 ? Math.round((totalSaved / totalOriginal) * 100) : 0;\n\n    // Convert byFamily map to sorted object\n    const byFamilyObj: Record<string, { count: number; savings: number }> = {};\n    const sortedFamilies = [...byFamily.entries()].sort((a, b) => b[1].count - a[1].count);\n    for (const [family, data] of sortedFamilies) {\n      const familySaved = data.totalOriginal - data.totalCompressed;\n      const familyPercent = data.totalOriginal > 0 ? Math.round((familySaved / data.totalOriginal) * 100) : 0;\n      byFamilyObj[family] = { count: data.count, savings: familyPercent };\n    }\n\n    // Recent commands (last 10)\n    const recentCommands = records.slice(-10).reverse().map(r => ({\n      command: r.command,\n      savings: r.originalTokens > 0\n        ? Math.round(((r.originalTokens - r.compressedTokens) / r.originalTokens) * 100)\n        : 0,\n      timestamp: r.timestamp,\n      source: r.source,\n    }));\n\n    return {\n      totalCommands: records.length,\n      totalOriginal,\n      totalCompressed,\n      totalSaved,\n      savingsPercent,\n      byFamily: byFamilyObj,\n      recentCommands,\n      bySource,\n    };\n  }\n\n  /**\n   * Get raw history for CLI display.\n   */\n  getHistory(limit: number = 20): TokenSavingsRecord[] {\n    const records = this.loadRecords('all');\n    return records.slice(-limit).reverse();\n  }\n\n  /**\n   * Get daily breakdown for graph display.\n   */\n  getDailyBreakdown(days: number = 30): Array<{ date: string; commands: number; saved: number }> {\n    const records = this.loadRecords('all');\n    const now = Date.now();\n    const cutoff = now - days * 24 * 60 * 60 * 1000;\n\n    const byDay = new Map<string, { commands: number; saved: number }>();\n\n    for (const r of records) {\n      if (r.timestamp < cutoff) continue;\n      const date = new Date(r.timestamp).toISOString().slice(0, 10);\n      const existing = byDay.get(date) || { commands: 0, saved: 0 };\n      existing.commands++;\n      existing.saved += r.originalTokens - r.compressedTokens;\n      byDay.set(date, existing);\n    }\n\n    return [...byDay.entries()]\n      .sort((a, b) => a[0].localeCompare(b[0]))\n      .map(([date, data]) => ({ date, ...data }));\n  }\n\n  // \u2500\u2500 Private \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  private loadRecords(period: 'session' | 'today' | 'week' | 'all'): TokenSavingsRecord[] {\n    if (!fs.existsSync(this.filePath)) return [];\n\n    let lines: string[];\n    try {\n      lines = fs.readFileSync(this.filePath, 'utf8').split('\\n').filter(l => l.trim());\n    } catch {\n      return [];\n    }\n\n    const records: TokenSavingsRecord[] = [];\n    for (const line of lines) {\n      try {\n        records.push(JSON.parse(line));\n      } catch {\n        // Skip malformed lines\n      }\n    }\n\n    // Filter by period\n    const now = Date.now();\n    switch (period) {\n      case 'session':\n        return records.filter(r => r.sessionId === this.sessionId);\n      case 'today': {\n        const startOfDay = new Date();\n        startOfDay.setHours(0, 0, 0, 0);\n        return records.filter(r => r.timestamp >= startOfDay.getTime());\n      }\n      case 'week':\n        return records.filter(r => r.timestamp >= now - 7 * 24 * 60 * 60 * 1000);\n      case 'all':\n        return records;\n    }\n  }\n\n  private extractFamily(strategy: string): string {\n    // \"git:status:ultra\" \u2192 \"git\"\n    // \"jest:failures\" \u2192 \"jest\"\n    const colon = strategy.indexOf(':');\n    return colon > 0 ? strategy.slice(0, colon) : strategy;\n  }\n\n  private maybeRotate(): void {\n    try {\n      const stat = fs.statSync(this.filePath);\n      // Rotate if file exceeds ~500KB\n      if (stat.size > 500 * 1024) {\n        const lines = fs.readFileSync(this.filePath, 'utf8').split('\\n').filter(l => l.trim());\n        if (lines.length > MAX_RECORDS) {\n          // Keep last half\n          const keep = lines.slice(-Math.floor(MAX_RECORDS / 2));\n          fs.writeFileSync(this.filePath, keep.join('\\n') + '\\n', 'utf8');\n        }\n      }\n    } catch {\n      // Non-critical\n    }\n  }\n}\n"],
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totalOriginal: number; totalCompressed: number }>();\n    const bySource = { exec: { count: 0, saved: 0 }, graph: { count: 0, saved: 0 }, memory: { count: 0, saved: 0 }, docs: { count: 0, saved: 0 }, data: { count: 0, saved: 0 } };\n\n    for (const r of records) {\n      totalOriginal += r.originalTokens;\n      totalCompressed += r.compressedTokens;\n\n      const family = this.extractFamily(r.strategy);\n      const existing = byFamily.get(family) || { count: 0, totalOriginal: 0, totalCompressed: 0 };\n      existing.count++;\n      existing.totalOriginal += r.originalTokens;\n      existing.totalCompressed += r.compressedTokens;\n      byFamily.set(family, existing);\n\n      const source = (r.source || 'exec') as 'exec' | 'graph' | 'memory' | 'docs' | 'data';\n      if (bySource[source]) {\n        bySource[source].count++;\n        bySource[source].saved += r.originalTokens - r.compressedTokens;\n      } else {\n        bySource.exec.count++;\n        bySource.exec.saved += r.originalTokens - r.compressedTokens;\n      }\n    }\n\n    const totalSaved = totalOriginal - totalCompressed;\n    const savingsPercent = totalOriginal > 0 ? 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package/dist/compression/types.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/compression/types.ts"],
-  "sourcesContent": ["/**\n * KiroGraph Shell Compression \u2014 Type Definitions\n */\n\nexport interface CompressionResult {\n  /** Compressed output text */\n  output: string;\n  /** Estimated original token count */\n  originalTokens: number;\n  /** Estimated compressed token count */\n  compressedTokens: number;\n  /** Percentage saved (0-100) */\n  savings: number;\n  /** Which strategy was applied */\n  strategy: string;\n  /** The detected command family */\n  commandFamily: string;\n}\n\nexport interface CompressorOptions {\n  /** Compression aggressiveness */\n  level: 'normal' | 'aggressive' | 'ultra';\n  /** Max output tokens (truncate beyond this) */\n  maxOutputTokens?: number;\n  /** Never compress error details (default: true) */\n  preserveErrors?: boolean;\n}\n\nexport interface FilterResult {\n  output: string;\n  strategy: string;\n}\n\nexport interface CommandFilter {\n  /** Name of this filter family */\n  name: string;\n  /** Test if this filter handles the given command */\n  matches(command: string): boolean;\n  /** Apply the filter to raw output */\n  filter(command: string, rawOutput: string, level: CompressorOptions['level']): FilterResult;\n}\n\nexport interface TokenSavingsRecord {\n  id?: number;\n  timestamp: number;\n  command: string;\n  originalTokens: number;\n  compressedTokens: number;\n  strategy: string;\n  sessionId: string;\n  /** Source of the saving: 'exec' for compression, 'graph' for MCP graph tools, 'memory' for memory tools, 'docs' for documentation tools */\n  source?: 'exec' | 'graph' | 'memory' | 'docs';\n}\n"],
+  "sourcesContent": ["/**\n * KiroGraph Shell Compression \u2014 Type Definitions\n */\n\nexport interface CompressionResult {\n  /** Compressed output text */\n  output: string;\n  /** Estimated original token count */\n  originalTokens: number;\n  /** Estimated compressed token count */\n  compressedTokens: number;\n  /** Percentage saved (0-100) */\n  savings: number;\n  /** Which strategy was applied */\n  strategy: string;\n  /** The detected command family */\n  commandFamily: string;\n}\n\nexport interface CompressorOptions {\n  /** Compression aggressiveness */\n  level: 'normal' | 'aggressive' | 'ultra';\n  /** Max output tokens (truncate beyond this) */\n  maxOutputTokens?: number;\n  /** Never compress error details (default: true) */\n  preserveErrors?: boolean;\n}\n\nexport interface FilterResult {\n  output: string;\n  strategy: string;\n}\n\nexport interface CommandFilter {\n  /** Name of this filter family */\n  name: string;\n  /** Test if this filter handles the given command */\n  matches(command: string): boolean;\n  /** Apply the filter to raw output */\n  filter(command: string, rawOutput: string, level: CompressorOptions['level']): FilterResult;\n}\n\nexport interface TokenSavingsRecord {\n  id?: number;\n  timestamp: number;\n  command: string;\n  originalTokens: number;\n  compressedTokens: number;\n  strategy: string;\n  sessionId: string;\n  /** Source of the saving: 'exec' for compression, 'graph' for MCP graph tools, 'memory' for memory tools, 'docs' for documentation tools, 'data' for data tools */\n  source?: 'exec' | 'graph' | 'memory' | 'docs' | 'data';\n}\n"],
   "mappings": ";;;;;;;;;;;;;;AAAA;AAAA;",
   "names": []
 }

package/dist/config.js

@@ -84,6 +84,15 @@ const KNOWN_FIELDS = /* @__PURE__ */ new Set([
   "docsContextThreshold",
   "docsMaxFileSize",
   "docsSummarization",
+  "enableData",
+  "dataInclude",
+  "dataExclude",
+  "dataLinkCode",
+  "dataContextLimit",
+  "dataMaxFileSize",
+  "dataMaxRows",
+  "dataQueryLimit",
+  "dataMaxResponseTokens",
   // Legacy aliases (still accepted, mapped during validation)
   "enableCompression",
   "compressionLevel"
@@ -133,7 +142,16 @@ function createDefaultConfig(_projectRoot) {
     docsContextLimit: 0,
     docsContextThreshold: 0.3,
     docsMaxFileSize: 1048576,
-    docsSummarization: "first-sentence"
+    docsSummarization: "first-sentence",
+    enableData: false,
+    dataInclude: ["**/*.csv", "**/*.tsv", "**/*.jsonl", "**/*.ndjson", "**/*.xlsx", "**/*.xls", "**/*.parquet", "data/**/*.json"],
+    dataExclude: ["node_modules/**", "dist/**", "build/**", ".git/**", "**/package-lock.json", "**/yarn.lock", "**/pnpm-lock.yaml", "**/tsconfig.json", "**/jsconfig.json", "coverage/**", "**/generated/**"],
+    dataLinkCode: true,
+    dataContextLimit: 0,
+    dataMaxFileSize: 52428800,
+    dataMaxRows: 1e6,
+    dataQueryLimit: 500,
+    dataMaxResponseTokens: 8e3
   };
 }
 function validateConfig(config) {
@@ -196,6 +214,15 @@ function validateConfig(config) {
   const docsMaxFileSize = typeof raw.docsMaxFileSize === "number" && raw.docsMaxFileSize > 0 ? raw.docsMaxFileSize : defaults.docsMaxFileSize;
   const DOCS_SUMMARIZATION_MODES = /* @__PURE__ */ new Set(["embedding", "first-sentence", "off"]);
   const docsSummarization = typeof raw.docsSummarization === "string" && DOCS_SUMMARIZATION_MODES.has(raw.docsSummarization) ? raw.docsSummarization : defaults.docsSummarization;
+  const enableData = typeof raw.enableData === "boolean" ? raw.enableData : defaults.enableData;
+  const dataInclude = Array.isArray(raw.dataInclude) && raw.dataInclude.every((p) => typeof p === "string") ? raw.dataInclude : defaults.dataInclude;
+  const dataExclude = Array.isArray(raw.dataExclude) && raw.dataExclude.every((p) => typeof p === "string") ? raw.dataExclude : defaults.dataExclude;
+  const dataLinkCode = typeof raw.dataLinkCode === "boolean" ? raw.dataLinkCode : defaults.dataLinkCode;
+  const dataContextLimit = typeof raw.dataContextLimit === "number" && raw.dataContextLimit >= 0 ? Math.round(raw.dataContextLimit) : defaults.dataContextLimit;
+  const dataMaxFileSize = typeof raw.dataMaxFileSize === "number" && raw.dataMaxFileSize > 0 ? raw.dataMaxFileSize : defaults.dataMaxFileSize;
+  const dataMaxRows = typeof raw.dataMaxRows === "number" && raw.dataMaxRows > 0 ? Math.round(raw.dataMaxRows) : defaults.dataMaxRows;
+  const dataQueryLimit = typeof raw.dataQueryLimit === "number" && raw.dataQueryLimit > 0 ? Math.min(Math.round(raw.dataQueryLimit), 500) : defaults.dataQueryLimit;
+  const dataMaxResponseTokens = typeof raw.dataMaxResponseTokens === "number" && raw.dataMaxResponseTokens > 0 ? Math.round(raw.dataMaxResponseTokens) : defaults.dataMaxResponseTokens;
   const include = _validatePatterns(raw.include, defaults.include);
   const exclude = _validatePatterns(raw.exclude, defaults.exclude);
   return {
@@ -236,6 +263,15 @@ function validateConfig(config) {
     docsContextThreshold,
     docsMaxFileSize,
     docsSummarization,
+    enableData,
+    dataInclude,
+    dataExclude,
+    dataLinkCode,
+    dataContextLimit,
+    dataMaxFileSize,
+    dataMaxRows,
+    dataQueryLimit,
+    dataMaxResponseTokens,
     ...architectureLayers !== void 0 ? { architectureLayers } : {}
   };
 }

package/dist/config.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../src/config.ts"],
-  "sourcesContent": ["/**\n * KiroGraph Config System\n *\n * Mirrors CodeGraph src/config.ts \u2014 load, save, validate, and provide defaults\n * for KiroGraph configuration.\n */\n\nimport * as fs from 'fs';\nimport * as path from 'path';\nimport picomatch from 'picomatch';\nimport { logWarn, logError } from './errors';\n\n// \u2500\u2500 Types \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport interface KiroGraphConfig {\n  version: number;\n  languages: string[];\n  include: string[];\n  exclude: string[];\n  maxFileSize: number;\n  extractDocstrings: boolean;\n  trackCallSites: boolean;\n  // Parity fields:\n  enableEmbeddings: boolean;\n  embeddingModel: string;\n  embeddingDim: number;\n  /** @deprecated Use semanticEngine instead. Kept for backwards compatibility. */\n  useVecIndex: boolean;\n  semanticEngine: 'cosine' | 'sqlite-vec' | 'orama' | 'pglite' | 'lancedb' | 'qdrant' | 'typesense';\n  typesenseDashboard: boolean;\n  qdrantDashboard: boolean;\n  minLogLevel: 'debug' | 'info' | 'warn' | 'error';\n  frameworkHints: string[];\n  fuzzyResolutionThreshold: number; // 0.0\u20131.0\n  /** Enable architecture analysis (package graph + layer detection). Default: false. */\n  enableArchitecture: boolean;\n  /**\n   * User-defined layer \u2192 glob pattern overrides.\n   * When set, config-defined layers win over auto-detected ones.\n   * Example: { \"api\": [\"src/routes/**\", \"src/controllers/**\"] }\n   */\n  architectureLayers?: Record<string, string[]>;\n  /** Agent communication style injected at agentSpawn. Default: 'off'. */\n  cavemanMode: 'off' | 'lite' | 'full' | 'ultra';\n  /** Shell compression level for kirograph_exec. 'off' disables the hook/steering. Default: 'normal'. */\n  shellCompressionLevel: 'off' | 'normal' | 'aggressive' | 'ultra';\n  /**\n   * Number of pending (unindexed) files above which kirograph_status warns the agent.\n   * Set to 0 to disable the warning. Default: 10.\n   */\n  syncWarningThreshold: number;\n  /** Enable persistent cross-session memory. Default: false. */\n  enableMemory: boolean;\n  /** FTS/vector blend for memory search: 0 = FTS only, 1 = vector only. Default: 0.5. */\n  memorySearchAlpha: number;\n  /** Store uncompressed originals when caveman is on. Default: false. */\n  memoryKeepRaw: boolean;\n  /** Auto-prune threshold (max observations). 0 = no limit. Default: 10000. */\n  memoryMaxObservations: number;\n  /** Seconds of inactivity before auto-closing a session. Default: 7200. */\n  memorySessionTimeout: number;\n  /** Max observations shown in kirograph_context. Default: 3. */\n  memoryContextLimit: number;\n  /** Min relevance score to include memory in context. Default: 0.3. */\n  memoryContextThreshold: number;\n  /** Glob patterns for paths to never capture in memory. Default: []. */\n  memoryExcludePatterns: string[];\n  /** Enable documentation indexing and navigation. Default: false. */\n  enableDocs: boolean;\n  /** Glob patterns for documentation files to include. */\n  docsInclude: string[];\n  /** Glob patterns for documentation files to exclude. */\n  docsExclude: string[];\n  /** Enable auto-linking of doc sections to code symbols. Default: true. */\n  docsLinkCode: boolean;\n  /** Max doc sections to include in kirograph_context. 0 = disabled. Default: 0. */\n  docsContextLimit: number;\n  /** Min relevance score to include a doc section in context. Default: 0.3. */\n  docsContextThreshold: number;\n  /** Max file size for doc files (bytes). Default: 1MB. */\n  docsMaxFileSize: number;\n  /** Summarization strategy. Default: 'first-sentence'. */\n  docsSummarization: 'embedding' | 'first-sentence' | 'off';\n}\n\n// \u2500\u2500 Constants \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nconst KIROGRAPH_DIR = '.kirograph';\nconst CONFIG_FILE = 'config.json';\n\nconst KNOWN_FIELDS = new Set<string>([\n  'version', 'languages', 'include', 'exclude', 'maxFileSize',\n  'extractDocstrings', 'trackCallSites', 'enableEmbeddings', 'embeddingModel', 'embeddingDim',\n  'useVecIndex', 'semanticEngine', 'typesenseDashboard', 'qdrantDashboard',\n  'minLogLevel', 'frameworkHints', 'fuzzyResolutionThreshold',\n  'enableArchitecture', 'architectureLayers', 'cavemanMode', 'shellCompressionLevel', 'syncWarningThreshold',\n  'enableMemory', 'memorySearchAlpha', 'memoryKeepRaw', 'memoryMaxObservations',\n  'memorySessionTimeout', 'memoryContextLimit', 'memoryContextThreshold', 'memoryExcludePatterns',\n  'enableDocs', 'docsInclude', 'docsExclude', 'docsLinkCode',\n  'docsContextLimit', 'docsContextThreshold', 'docsMaxFileSize', 'docsSummarization',\n  // Legacy aliases (still accepted, mapped during validation)\n  'enableCompression', 'compressionLevel',\n]);\n\nconst LOG_LEVELS = new Set(['debug', 'info', 'warn', 'error']);\n\n// \u2500\u2500 ReDoS-safe regex check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/**\n * Returns false if the pattern is potentially dangerous (ReDoS risk) or too long.\n * Checks for catastrophic backtracking patterns like (a+)+ or (a|a)+.\n */\nexport function isSafeRegex(pattern: string): boolean {\n  if (pattern.length > 100) return false;\n  // Detect nested quantifiers: (x+)+ or (x*)+ or (x+)* etc.\n  if (/\\([^)]*[+*][^)]*\\)[+*?]/.test(pattern)) return false;\n  // Detect alternation with overlap: (a|a)+ style\n  if (/\\([^)]*\\|[^)]*\\)[+*]/.test(pattern)) return false;\n  return true;\n}\n\n// \u2500\u2500 Default config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function createDefaultConfig(_projectRoot?: string): KiroGraphConfig {\n  return {\n    version: 2,\n    languages: [],\n    include: [],\n    exclude: ['**/node_modules/**', '**/dist/**', '**/build/**', '**/.git/**', '*.min.js', '**/.kirograph/**'],\n    maxFileSize: 1_048_576,\n    extractDocstrings: true,\n    trackCallSites: true,\n    enableEmbeddings: false,\n    embeddingModel: 'nomic-ai/nomic-embed-text-v1.5',\n    embeddingDim: 768,\n    useVecIndex: false,\n    semanticEngine: 'cosine',\n    typesenseDashboard: false,\n    qdrantDashboard: false,\n    minLogLevel: 'warn',\n    frameworkHints: [],\n    fuzzyResolutionThreshold: 0.5,\n    enableArchitecture: false,\n    cavemanMode: 'off',\n    shellCompressionLevel: 'normal',\n    syncWarningThreshold: 10,\n    enableMemory: false,\n    memorySearchAlpha: 0.5,\n    memoryKeepRaw: false,\n    memoryMaxObservations: 10000,\n    memorySessionTimeout: 7200,\n    memoryContextLimit: 3,\n    memoryContextThreshold: 0.3,\n    memoryExcludePatterns: [],\n    enableDocs: false,\n    docsInclude: ['**/*.md', '**/*.mdx', '**/*.rst', '**/*.adoc', '**/*.asciidoc', '**/*.rdoc', '**/*.org', '**/*.cheatmd', 'docs/**/*.txt', 'docs/**/*.html'],\n    docsExclude: ['node_modules/**', '**/CHANGELOG*', '**/LICENSE*', '**/CHANGES*', 'dist/**', 'build/**', 'coverage/**', '.git/**', '**/generated/**', '**/auto-generated/**', '**/vendor/**', '_build/**'],\n    docsLinkCode: true,\n    docsContextLimit: 0,\n    docsContextThreshold: 0.3,\n    docsMaxFileSize: 1_048_576,\n    docsSummarization: 'first-sentence',\n  };\n}\n\n// \u2500\u2500 Validation \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function validateConfig(config: unknown): KiroGraphConfig {\n  const defaults = createDefaultConfig();\n\n  if (typeof config !== 'object' || config === null) {\n    return defaults;\n  }\n\n  const raw = config as Record<string, unknown>;\n\n  // Warn about unknown fields\n  for (const key of Object.keys(raw)) {\n    if (!KNOWN_FIELDS.has(key)) {\n      logWarn(`Unknown config field: ${key}`);\n    }\n  }\n\n  // Validate and coerce each field\n  const version = typeof raw.version === 'number' ? raw.version : defaults.version;\n  const languages = Array.isArray(raw.languages) && raw.languages.every(l => typeof l === 'string')\n    ? (raw.languages as string[])\n    : defaults.languages;\n  const maxFileSize = typeof raw.maxFileSize === 'number' && raw.maxFileSize > 0\n    ? raw.maxFileSize\n    : defaults.maxFileSize;\n  const extractDocstrings = typeof raw.extractDocstrings === 'boolean'\n    ? raw.extractDocstrings\n    : defaults.extractDocstrings;\n  const trackCallSites = typeof raw.trackCallSites === 'boolean'\n    ? raw.trackCallSites\n    : defaults.trackCallSites;\n  const enableEmbeddings = typeof raw.enableEmbeddings === 'boolean'\n    ? raw.enableEmbeddings\n    : defaults.enableEmbeddings;\n  const embeddingModel = typeof raw.embeddingModel === 'string' && raw.embeddingModel.length > 0\n    ? raw.embeddingModel\n    : defaults.embeddingModel;\n  const embeddingDim = typeof raw.embeddingDim === 'number' && raw.embeddingDim > 0\n    ? raw.embeddingDim\n    : defaults.embeddingDim;\n  const useVecIndex = typeof raw.useVecIndex === 'boolean'\n    ? raw.useVecIndex\n    : defaults.useVecIndex;\n  const SEMANTIC_ENGINES = new Set(['cosine', 'sqlite-vec', 'orama', 'pglite', 'lancedb', 'qdrant', 'typesense']);\n  // useVecIndex is a legacy alias: if set and no explicit semanticEngine, map it\n  const semanticEngine = typeof raw.semanticEngine === 'string' && SEMANTIC_ENGINES.has(raw.semanticEngine)\n    ? (raw.semanticEngine as KiroGraphConfig['semanticEngine'])\n    : useVecIndex ? 'sqlite-vec' : defaults.semanticEngine;\n  const typesenseDashboard = typeof raw.typesenseDashboard === 'boolean'\n    ? raw.typesenseDashboard\n    : defaults.typesenseDashboard;\n  const qdrantDashboard = typeof raw.qdrantDashboard === 'boolean'\n    ? raw.qdrantDashboard\n    : defaults.qdrantDashboard;\n  const minLogLevel = typeof raw.minLogLevel === 'string' && LOG_LEVELS.has(raw.minLogLevel)\n    ? (raw.minLogLevel as KiroGraphConfig['minLogLevel'])\n    : defaults.minLogLevel;\n  const frameworkHints = Array.isArray(raw.frameworkHints) && raw.frameworkHints.every(h => typeof h === 'string')\n    ? (raw.frameworkHints as string[])\n    : defaults.frameworkHints;\n  const fuzzyResolutionThreshold = typeof raw.fuzzyResolutionThreshold === 'number'\n    && raw.fuzzyResolutionThreshold >= 0\n    && raw.fuzzyResolutionThreshold <= 1\n    ? raw.fuzzyResolutionThreshold\n    : defaults.fuzzyResolutionThreshold;\n  const enableArchitecture = typeof raw.enableArchitecture === 'boolean'\n    ? raw.enableArchitecture\n    : defaults.enableArchitecture;\n  const architectureLayers = _validateArchitectureLayers(raw.architectureLayers);\n  const CAVEMAN_MODES = new Set(['off', 'lite', 'full', 'ultra']);\n  const cavemanMode = typeof raw.cavemanMode === 'string' && CAVEMAN_MODES.has(raw.cavemanMode)\n    ? (raw.cavemanMode as KiroGraphConfig['cavemanMode'])\n    : defaults.cavemanMode;\n  const COMPRESSION_LEVELS = new Set(['off', 'normal', 'aggressive', 'ultra']);\n  // Support legacy field names: enableCompression (boolean) and compressionLevel (string)\n  let shellCompressionLevel: KiroGraphConfig['shellCompressionLevel'];\n  if (typeof raw.shellCompressionLevel === 'string' && COMPRESSION_LEVELS.has(raw.shellCompressionLevel)) {\n    shellCompressionLevel = raw.shellCompressionLevel as KiroGraphConfig['shellCompressionLevel'];\n  } else if (typeof raw.compressionLevel === 'string' && COMPRESSION_LEVELS.has(raw.compressionLevel)) {\n    shellCompressionLevel = raw.compressionLevel as KiroGraphConfig['shellCompressionLevel'];\n  } else if (typeof raw.enableCompression === 'boolean') {\n    shellCompressionLevel = raw.enableCompression ? 'normal' : 'off';\n  } else {\n    shellCompressionLevel = defaults.shellCompressionLevel;\n  }\n  const syncWarningThreshold = typeof raw.syncWarningThreshold === 'number' && raw.syncWarningThreshold >= 0\n    ? Math.round(raw.syncWarningThreshold)\n    : defaults.syncWarningThreshold;\n\n  // \u2500\u2500 Memory config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n  const enableMemory = typeof raw.enableMemory === 'boolean'\n    ? raw.enableMemory\n    : defaults.enableMemory;\n  const memorySearchAlpha = typeof raw.memorySearchAlpha === 'number'\n    && raw.memorySearchAlpha >= 0 && raw.memorySearchAlpha <= 1\n    ? raw.memorySearchAlpha\n    : defaults.memorySearchAlpha;\n  const memoryKeepRaw = typeof raw.memoryKeepRaw === 'boolean'\n    ? raw.memoryKeepRaw\n    : defaults.memoryKeepRaw;\n  const memoryMaxObservations = typeof raw.memoryMaxObservations === 'number' && raw.memoryMaxObservations >= 0\n    ? Math.round(raw.memoryMaxObservations)\n    : defaults.memoryMaxObservations;\n  const memorySessionTimeout = typeof raw.memorySessionTimeout === 'number' && raw.memorySessionTimeout > 0\n    ? Math.round(raw.memorySessionTimeout)\n    : defaults.memorySessionTimeout;\n  const memoryContextLimit = typeof raw.memoryContextLimit === 'number' && raw.memoryContextLimit >= 0\n    ? Math.round(raw.memoryContextLimit)\n    : defaults.memoryContextLimit;\n  const memoryContextThreshold = typeof raw.memoryContextThreshold === 'number'\n    && raw.memoryContextThreshold >= 0 && raw.memoryContextThreshold <= 1\n    ? raw.memoryContextThreshold\n    : defaults.memoryContextThreshold;\n  const memoryExcludePatterns = Array.isArray(raw.memoryExcludePatterns)\n    && raw.memoryExcludePatterns.every((p: unknown) => typeof p === 'string')\n    ? (raw.memoryExcludePatterns as string[])\n    : defaults.memoryExcludePatterns;\n\n  // \u2500\u2500 Docs config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n  const enableDocs = typeof raw.enableDocs === 'boolean'\n    ? raw.enableDocs\n    : defaults.enableDocs;\n  const docsInclude = Array.isArray(raw.docsInclude)\n    && raw.docsInclude.every((p: unknown) => typeof p === 'string')\n    ? (raw.docsInclude as string[])\n    : defaults.docsInclude;\n  const docsExclude = Array.isArray(raw.docsExclude)\n    && raw.docsExclude.every((p: unknown) => typeof p === 'string')\n    ? (raw.docsExclude as string[])\n    : defaults.docsExclude;\n  const docsLinkCode = typeof raw.docsLinkCode === 'boolean'\n    ? raw.docsLinkCode\n    : defaults.docsLinkCode;\n  const docsContextLimit = typeof raw.docsContextLimit === 'number' && raw.docsContextLimit >= 0\n    ? Math.round(raw.docsContextLimit)\n    : defaults.docsContextLimit;\n  const docsContextThreshold = typeof raw.docsContextThreshold === 'number'\n    && raw.docsContextThreshold >= 0 && raw.docsContextThreshold <= 1\n    ? raw.docsContextThreshold\n    : defaults.docsContextThreshold;\n  const docsMaxFileSize = typeof raw.docsMaxFileSize === 'number' && raw.docsMaxFileSize > 0\n    ? raw.docsMaxFileSize\n    : defaults.docsMaxFileSize;\n  const DOCS_SUMMARIZATION_MODES = new Set(['embedding', 'first-sentence', 'off']);\n  const docsSummarization = typeof raw.docsSummarization === 'string' && DOCS_SUMMARIZATION_MODES.has(raw.docsSummarization)\n    ? 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err.message : String(err) });\n    return createDefaultConfig(projectRoot);\n  }\n\n  const config = validateConfig(raw);\n\n  // Migrate v1 \u2192 v2: upgrade shallow exclude patterns to recursive\n  if (config.version < 2) {\n    config.version = 2;\n    config.exclude = migrateExcludePatterns(config.exclude);\n    await fs.promises.mkdir(dir, { recursive: true });\n    await _writeAtomic(cfgPath, config);\n  }\n\n  return config;\n}\n\nexport async function saveConfig(projectRoot: string, config: KiroGraphConfig): Promise<void> {\n  const dir = path.join(projectRoot, KIROGRAPH_DIR);\n  const cfgPath = path.join(dir, CONFIG_FILE);\n  await fs.promises.mkdir(dir, { recursive: true });\n  await _writeAtomic(cfgPath, config);\n}\n\nasync function _writeAtomic(cfgPath: string, config: KiroGraphConfig): Promise<void> {\n  const tmp = cfgPath + '.tmp';\n  await fs.promises.writeFile(tmp, JSON.stringify(config, null, 2), 'utf8');\n  await fs.promises.rename(tmp, cfgPath);\n}\n\n// \u2500\u2500 Update helpers \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport async function updateConfig(\n  projectRoot: string,\n  patch: Partial<KiroGraphConfig>\n): Promise<KiroGraphConfig> {\n  const current = await loadConfig(projectRoot);\n  const updated = validateConfig({ ...current, ...patch });\n  await saveConfig(projectRoot, updated);\n  return updated;\n}\n\nexport async function addIncludePatterns(projectRoot: string, patterns: string[]): Promise<void> {\n  const config = await loadConfig(projectRoot);\n  const existing = new Set(config.include);\n  const toAdd = patterns.filter(p => isSafeRegex(p) && !existing.has(p));\n  if (toAdd.length === 0) return;\n  await saveConfig(projectRoot, { ...config, include: [...config.include, ...toAdd] });\n}\n\nexport async function addExcludePatterns(projectRoot: string, patterns: string[]): Promise<void> {\n  const config = await loadConfig(projectRoot);\n  const existing = new Set(config.exclude);\n  const toAdd = patterns.filter(p => isSafeRegex(p) && !existing.has(p));\n  if (toAdd.length === 0) return;\n  await saveConfig(projectRoot, { ...config, exclude: [...config.exclude, ...toAdd] });\n}\n\n// \u2500\u2500 File inclusion check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function shouldIncludeFile(config: KiroGraphConfig, relPath: string): boolean {\n  // Check exclude patterns first\n  for (const pattern of config.exclude) {\n    if (picomatch(pattern)(relPath)) return false;\n  }\n  // If include patterns are specified, file must match at least one\n  if (config.include.length > 0) {\n    return config.include.some(pattern => picomatch(pattern)(relPath));\n  }\n  return true;\n}\n"],
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Kept for backwards compatibility. */\n  useVecIndex: boolean;\n  semanticEngine: 'cosine' | 'sqlite-vec' | 'orama' | 'pglite' | 'lancedb' | 'qdrant' | 'typesense';\n  typesenseDashboard: boolean;\n  qdrantDashboard: boolean;\n  minLogLevel: 'debug' | 'info' | 'warn' | 'error';\n  frameworkHints: string[];\n  fuzzyResolutionThreshold: number; // 0.0\u20131.0\n  /** Enable architecture analysis (package graph + layer detection). Default: false. */\n  enableArchitecture: boolean;\n  /**\n   * User-defined layer \u2192 glob pattern overrides.\n   * When set, config-defined layers win over auto-detected ones.\n   * Example: { \"api\": [\"src/routes/**\", \"src/controllers/**\"] }\n   */\n  architectureLayers?: Record<string, string[]>;\n  /** Agent communication style injected at agentSpawn. Default: 'off'. */\n  cavemanMode: 'off' | 'lite' | 'full' | 'ultra';\n  /** Shell compression level for kirograph_exec. 'off' disables the hook/steering. Default: 'normal'. */\n  shellCompressionLevel: 'off' | 'normal' | 'aggressive' | 'ultra';\n  /**\n   * Number of pending (unindexed) files above which kirograph_status warns the agent.\n   * Set to 0 to disable the warning. Default: 10.\n   */\n  syncWarningThreshold: number;\n  /** Enable persistent cross-session memory. Default: false. */\n  enableMemory: boolean;\n  /** FTS/vector blend for memory search: 0 = FTS only, 1 = vector only. Default: 0.5. */\n  memorySearchAlpha: number;\n  /** Store uncompressed originals when caveman is on. Default: false. */\n  memoryKeepRaw: boolean;\n  /** Auto-prune threshold (max observations). 0 = no limit. Default: 10000. */\n  memoryMaxObservations: number;\n  /** Seconds of inactivity before auto-closing a session. Default: 7200. */\n  memorySessionTimeout: number;\n  /** Max observations shown in kirograph_context. Default: 3. */\n  memoryContextLimit: number;\n  /** Min relevance score to include memory in context. Default: 0.3. */\n  memoryContextThreshold: number;\n  /** Glob patterns for paths to never capture in memory. Default: []. */\n  memoryExcludePatterns: string[];\n  /** Enable documentation indexing and navigation. Default: false. */\n  enableDocs: boolean;\n  /** Glob patterns for documentation files to include. */\n  docsInclude: string[];\n  /** Glob patterns for documentation files to exclude. */\n  docsExclude: string[];\n  /** Enable auto-linking of doc sections to code symbols. Default: true. */\n  docsLinkCode: boolean;\n  /** Max doc sections to include in kirograph_context. 0 = disabled. Default: 0. */\n  docsContextLimit: number;\n  /** Min relevance score to include a doc section in context. Default: 0.3. */\n  docsContextThreshold: number;\n  /** Max file size for doc files (bytes). Default: 1MB. */\n  docsMaxFileSize: number;\n  /** Summarization strategy. Default: 'first-sentence'. */\n  docsSummarization: 'embedding' | 'first-sentence' | 'off';\n  /** Enable tabular data indexing and querying. Default: false. */\n  enableData: boolean;\n  /** Glob patterns for data files to include. */\n  dataInclude: string[];\n  /** Glob patterns for data files to exclude. */\n  dataExclude: string[];\n  /** Enable auto-linking of data files to code symbols. Default: true. */\n  dataLinkCode: boolean;\n  /** Max datasets to include in kirograph_context. 0 = disabled. Default: 0. */\n  dataContextLimit: number;\n  /** Max file size for data files (bytes). Default: 50MB. */\n  dataMaxFileSize: number;\n  /** Max rows to index per file. Default: 1,000,000. */\n  dataMaxRows: number;\n  /** Max rows returned per query. Default: 500. */\n  dataQueryLimit: number;\n  /** Max token budget per response. Default: 8000. */\n  dataMaxResponseTokens: number;\n}\n\n// \u2500\u2500 Constants \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nconst KIROGRAPH_DIR = '.kirograph';\nconst CONFIG_FILE = 'config.json';\n\nconst KNOWN_FIELDS = new Set<string>([\n  'version', 'languages', 'include', 'exclude', 'maxFileSize',\n  'extractDocstrings', 'trackCallSites', 'enableEmbeddings', 'embeddingModel', 'embeddingDim',\n  'useVecIndex', 'semanticEngine', 'typesenseDashboard', 'qdrantDashboard',\n  'minLogLevel', 'frameworkHints', 'fuzzyResolutionThreshold',\n  'enableArchitecture', 'architectureLayers', 'cavemanMode', 'shellCompressionLevel', 'syncWarningThreshold',\n  'enableMemory', 'memorySearchAlpha', 'memoryKeepRaw', 'memoryMaxObservations',\n  'memorySessionTimeout', 'memoryContextLimit', 'memoryContextThreshold', 'memoryExcludePatterns',\n  'enableDocs', 'docsInclude', 'docsExclude', 'docsLinkCode',\n  'docsContextLimit', 'docsContextThreshold', 'docsMaxFileSize', 'docsSummarization',\n  'enableData', 'dataInclude', 'dataExclude', 'dataLinkCode',\n  'dataContextLimit', 'dataMaxFileSize', 'dataMaxRows', 'dataQueryLimit', 'dataMaxResponseTokens',\n  // Legacy aliases (still accepted, mapped during validation)\n  'enableCompression', 'compressionLevel',\n]);\n\nconst LOG_LEVELS = new Set(['debug', 'info', 'warn', 'error']);\n\n// \u2500\u2500 ReDoS-safe regex check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/**\n * Returns false if the pattern is potentially dangerous (ReDoS risk) or too long.\n * Checks for catastrophic backtracking patterns like (a+)+ or (a|a)+.\n */\nexport function isSafeRegex(pattern: string): boolean {\n  if (pattern.length > 100) return false;\n  // Detect nested quantifiers: (x+)+ or (x*)+ or (x+)* etc.\n  if (/\\([^)]*[+*][^)]*\\)[+*?]/.test(pattern)) return false;\n  // Detect alternation with overlap: (a|a)+ style\n  if (/\\([^)]*\\|[^)]*\\)[+*]/.test(pattern)) return false;\n  return true;\n}\n\n// \u2500\u2500 Default config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function createDefaultConfig(_projectRoot?: string): KiroGraphConfig {\n  return {\n    version: 2,\n    languages: [],\n    include: [],\n    exclude: ['**/node_modules/**', '**/dist/**', '**/build/**', '**/.git/**', '*.min.js', '**/.kirograph/**'],\n    maxFileSize: 1_048_576,\n    extractDocstrings: true,\n    trackCallSites: true,\n    enableEmbeddings: false,\n    embeddingModel: 'nomic-ai/nomic-embed-text-v1.5',\n    embeddingDim: 768,\n    useVecIndex: false,\n    semanticEngine: 'cosine',\n    typesenseDashboard: false,\n    qdrantDashboard: false,\n    minLogLevel: 'warn',\n    frameworkHints: [],\n    fuzzyResolutionThreshold: 0.5,\n    enableArchitecture: false,\n    cavemanMode: 'off',\n    shellCompressionLevel: 'normal',\n    syncWarningThreshold: 10,\n    enableMemory: false,\n    memorySearchAlpha: 0.5,\n    memoryKeepRaw: false,\n    memoryMaxObservations: 10000,\n    memorySessionTimeout: 7200,\n    memoryContextLimit: 3,\n    memoryContextThreshold: 0.3,\n    memoryExcludePatterns: [],\n    enableDocs: false,\n    docsInclude: ['**/*.md', '**/*.mdx', '**/*.rst', '**/*.adoc', '**/*.asciidoc', '**/*.rdoc', '**/*.org', '**/*.cheatmd', 'docs/**/*.txt', 'docs/**/*.html'],\n    docsExclude: ['node_modules/**', '**/CHANGELOG*', '**/LICENSE*', '**/CHANGES*', 'dist/**', 'build/**', 'coverage/**', '.git/**', '**/generated/**', '**/auto-generated/**', '**/vendor/**', '_build/**'],\n    docsLinkCode: true,\n    docsContextLimit: 0,\n    docsContextThreshold: 0.3,\n    docsMaxFileSize: 1_048_576,\n    docsSummarization: 'first-sentence',\n    enableData: false,\n    dataInclude: ['**/*.csv', '**/*.tsv', '**/*.jsonl', '**/*.ndjson', '**/*.xlsx', '**/*.xls', '**/*.parquet', 'data/**/*.json'],\n    dataExclude: ['node_modules/**', 'dist/**', 'build/**', '.git/**', '**/package-lock.json', '**/yarn.lock', '**/pnpm-lock.yaml', '**/tsconfig.json', '**/jsconfig.json', 'coverage/**', '**/generated/**'],\n    dataLinkCode: true,\n    dataContextLimit: 0,\n    dataMaxFileSize: 52_428_800,\n    dataMaxRows: 1_000_000,\n    dataQueryLimit: 500,\n    dataMaxResponseTokens: 8000,\n  };\n}\n\n// \u2500\u2500 Validation \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function validateConfig(config: unknown): KiroGraphConfig {\n  const defaults = createDefaultConfig();\n\n  if (typeof config !== 'object' || config === null) {\n    return defaults;\n  }\n\n  const raw = config as Record<string, unknown>;\n\n  // Warn about unknown fields\n  for (const key of Object.keys(raw)) {\n    if (!KNOWN_FIELDS.has(key)) {\n      logWarn(`Unknown config field: ${key}`);\n    }\n  }\n\n  // Validate and coerce each field\n  const version = typeof raw.version === 'number' ? raw.version : defaults.version;\n  const languages = Array.isArray(raw.languages) && raw.languages.every(l => typeof l === 'string')\n    ? (raw.languages as string[])\n    : defaults.languages;\n  const maxFileSize = typeof raw.maxFileSize === 'number' && raw.maxFileSize > 0\n    ? raw.maxFileSize\n    : defaults.maxFileSize;\n  const extractDocstrings = typeof raw.extractDocstrings === 'boolean'\n    ? raw.extractDocstrings\n    : defaults.extractDocstrings;\n  const trackCallSites = typeof raw.trackCallSites === 'boolean'\n    ? raw.trackCallSites\n    : defaults.trackCallSites;\n  const enableEmbeddings = typeof raw.enableEmbeddings === 'boolean'\n    ? raw.enableEmbeddings\n    : defaults.enableEmbeddings;\n  const embeddingModel = typeof raw.embeddingModel === 'string' && raw.embeddingModel.length > 0\n    ? raw.embeddingModel\n    : defaults.embeddingModel;\n  const embeddingDim = typeof raw.embeddingDim === 'number' && raw.embeddingDim > 0\n    ? raw.embeddingDim\n    : defaults.embeddingDim;\n  const useVecIndex = typeof raw.useVecIndex === 'boolean'\n    ? raw.useVecIndex\n    : defaults.useVecIndex;\n  const SEMANTIC_ENGINES = new Set(['cosine', 'sqlite-vec', 'orama', 'pglite', 'lancedb', 'qdrant', 'typesense']);\n  // useVecIndex is a legacy alias: if set and no explicit semanticEngine, map it\n  const semanticEngine = typeof raw.semanticEngine === 'string' && SEMANTIC_ENGINES.has(raw.semanticEngine)\n    ? (raw.semanticEngine as KiroGraphConfig['semanticEngine'])\n    : useVecIndex ? 'sqlite-vec' : defaults.semanticEngine;\n  const typesenseDashboard = typeof raw.typesenseDashboard === 'boolean'\n    ? raw.typesenseDashboard\n    : defaults.typesenseDashboard;\n  const qdrantDashboard = typeof raw.qdrantDashboard === 'boolean'\n    ? raw.qdrantDashboard\n    : defaults.qdrantDashboard;\n  const minLogLevel = typeof raw.minLogLevel === 'string' && LOG_LEVELS.has(raw.minLogLevel)\n    ? (raw.minLogLevel as KiroGraphConfig['minLogLevel'])\n    : defaults.minLogLevel;\n  const frameworkHints = Array.isArray(raw.frameworkHints) && raw.frameworkHints.every(h => typeof h === 'string')\n    ? (raw.frameworkHints as string[])\n    : defaults.frameworkHints;\n  const fuzzyResolutionThreshold = typeof raw.fuzzyResolutionThreshold === 'number'\n    && raw.fuzzyResolutionThreshold >= 0\n    && raw.fuzzyResolutionThreshold <= 1\n    ? raw.fuzzyResolutionThreshold\n    : defaults.fuzzyResolutionThreshold;\n  const enableArchitecture = typeof raw.enableArchitecture === 'boolean'\n    ? raw.enableArchitecture\n    : defaults.enableArchitecture;\n  const architectureLayers = _validateArchitectureLayers(raw.architectureLayers);\n  const CAVEMAN_MODES = new Set(['off', 'lite', 'full', 'ultra']);\n  const cavemanMode = typeof raw.cavemanMode === 'string' && CAVEMAN_MODES.has(raw.cavemanMode)\n    ? (raw.cavemanMode as KiroGraphConfig['cavemanMode'])\n    : defaults.cavemanMode;\n  const COMPRESSION_LEVELS = new Set(['off', 'normal', 'aggressive', 'ultra']);\n  // Support legacy field names: enableCompression (boolean) and compressionLevel (string)\n  let shellCompressionLevel: KiroGraphConfig['shellCompressionLevel'];\n  if (typeof raw.shellCompressionLevel === 'string' && COMPRESSION_LEVELS.has(raw.shellCompressionLevel)) {\n    shellCompressionLevel = raw.shellCompressionLevel as KiroGraphConfig['shellCompressionLevel'];\n  } else if (typeof raw.compressionLevel === 'string' && COMPRESSION_LEVELS.has(raw.compressionLevel)) {\n    shellCompressionLevel = raw.compressionLevel as KiroGraphConfig['shellCompressionLevel'];\n  } else if (typeof raw.enableCompression === 'boolean') {\n    shellCompressionLevel = raw.enableCompression ? 'normal' : 'off';\n  } else {\n    shellCompressionLevel = defaults.shellCompressionLevel;\n  }\n  const syncWarningThreshold = typeof raw.syncWarningThreshold === 'number' && raw.syncWarningThreshold >= 0\n    ? Math.round(raw.syncWarningThreshold)\n    : defaults.syncWarningThreshold;\n\n  // \u2500\u2500 Memory config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n  const enableMemory = typeof raw.enableMemory === 'boolean'\n    ? raw.enableMemory\n    : defaults.enableMemory;\n  const memorySearchAlpha = typeof raw.memorySearchAlpha === 'number'\n    && raw.memorySearchAlpha >= 0 && raw.memorySearchAlpha <= 1\n    ? raw.memorySearchAlpha\n    : defaults.memorySearchAlpha;\n  const memoryKeepRaw = typeof raw.memoryKeepRaw === 'boolean'\n    ? raw.memoryKeepRaw\n    : defaults.memoryKeepRaw;\n  const memoryMaxObservations = typeof raw.memoryMaxObservations === 'number' && raw.memoryMaxObservations >= 0\n    ? Math.round(raw.memoryMaxObservations)\n    : defaults.memoryMaxObservations;\n  const memorySessionTimeout = typeof raw.memorySessionTimeout === 'number' && raw.memorySessionTimeout > 0\n    ? Math.round(raw.memorySessionTimeout)\n    : defaults.memorySessionTimeout;\n  const memoryContextLimit = typeof raw.memoryContextLimit === 'number' && raw.memoryContextLimit >= 0\n    ? Math.round(raw.memoryContextLimit)\n    : defaults.memoryContextLimit;\n  const memoryContextThreshold = typeof raw.memoryContextThreshold === 'number'\n    && raw.memoryContextThreshold >= 0 && raw.memoryContextThreshold <= 1\n    ? raw.memoryContextThreshold\n    : defaults.memoryContextThreshold;\n  const memoryExcludePatterns = Array.isArray(raw.memoryExcludePatterns)\n    && raw.memoryExcludePatterns.every((p: unknown) => typeof p === 'string')\n    ? (raw.memoryExcludePatterns as string[])\n    : defaults.memoryExcludePatterns;\n\n  // \u2500\u2500 Docs config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n  const enableDocs = typeof raw.enableDocs === 'boolean'\n    ? raw.enableDocs\n    : defaults.enableDocs;\n  const docsInclude = Array.isArray(raw.docsInclude)\n    && raw.docsInclude.every((p: unknown) => typeof p === 'string')\n    ? (raw.docsInclude as string[])\n    : defaults.docsInclude;\n  const docsExclude = Array.isArray(raw.docsExclude)\n    && raw.docsExclude.every((p: unknown) => typeof p === 'string')\n    ? (raw.docsExclude as string[])\n    : defaults.docsExclude;\n  const docsLinkCode = typeof raw.docsLinkCode === 'boolean'\n    ? raw.docsLinkCode\n    : defaults.docsLinkCode;\n  const docsContextLimit = typeof raw.docsContextLimit === 'number' && raw.docsContextLimit >= 0\n    ? Math.round(raw.docsContextLimit)\n    : defaults.docsContextLimit;\n  const docsContextThreshold = typeof raw.docsContextThreshold === 'number'\n    && raw.docsContextThreshold >= 0 && raw.docsContextThreshold <= 1\n    ? raw.docsContextThreshold\n    : defaults.docsContextThreshold;\n  const docsMaxFileSize = typeof raw.docsMaxFileSize === 'number' && raw.docsMaxFileSize > 0\n    ? raw.docsMaxFileSize\n    : defaults.docsMaxFileSize;\n  const DOCS_SUMMARIZATION_MODES = new Set(['embedding', 'first-sentence', 'off']);\n  const docsSummarization = typeof raw.docsSummarization === 'string' && DOCS_SUMMARIZATION_MODES.has(raw.docsSummarization)\n    ? (raw.docsSummarization as KiroGraphConfig['docsSummarization'])\n    : defaults.docsSummarization;\n\n  // \u2500\u2500 Data config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n  const enableData = typeof raw.enableData === 'boolean' ? raw.enableData : defaults.enableData;\n  const dataInclude = Array.isArray(raw.dataInclude) && raw.dataInclude.every((p: unknown) => typeof p === 'string')\n    ? (raw.dataInclude as string[]) : defaults.dataInclude;\n  const dataExclude = Array.isArray(raw.dataExclude) && raw.dataExclude.every((p: unknown) => typeof p === 'string')\n    ? (raw.dataExclude as string[]) : defaults.dataExclude;\n  const dataLinkCode = typeof raw.dataLinkCode === 'boolean' ? raw.dataLinkCode : defaults.dataLinkCode;\n  const dataContextLimit = typeof raw.dataContextLimit === 'number' && raw.dataContextLimit >= 0\n    ? Math.round(raw.dataContextLimit) : defaults.dataContextLimit;\n  const dataMaxFileSize = typeof raw.dataMaxFileSize === 'number' && raw.dataMaxFileSize > 0\n    ? raw.dataMaxFileSize : defaults.dataMaxFileSize;\n  const dataMaxRows = typeof raw.dataMaxRows === 'number' && raw.dataMaxRows > 0\n    ? Math.round(raw.dataMaxRows) : defaults.dataMaxRows;\n  const dataQueryLimit = typeof raw.dataQueryLimit === 'number' && raw.dataQueryLimit > 0\n    ? Math.min(Math.round(raw.dataQueryLimit), 500) : defaults.dataQueryLimit;\n  const dataMaxResponseTokens = typeof raw.dataMaxResponseTokens === 'number' && raw.dataMaxResponseTokens > 0\n    ? Math.round(raw.dataMaxResponseTokens) : defaults.dataMaxResponseTokens;\n\n  // Validate glob patterns \u2014 exclude unsafe regex patterns\n  const include = _validatePatterns(raw.include, defaults.include);\n  const exclude = _validatePatterns(raw.exclude, defaults.exclude);\n\n  return {\n    version,\n    languages,\n    include,\n    exclude,\n    maxFileSize,\n    extractDocstrings,\n    trackCallSites,\n    enableEmbeddings,\n    embeddingModel,\n    embeddingDim,\n    useVecIndex,\n    semanticEngine,\n    typesenseDashboard,\n    qdrantDashboard,\n    minLogLevel,\n    frameworkHints,\n    fuzzyResolutionThreshold,\n    enableArchitecture,\n    cavemanMode,\n    shellCompressionLevel,\n    syncWarningThreshold,\n    enableMemory,\n    memorySearchAlpha,\n    memoryKeepRaw,\n    memoryMaxObservations,\n    memorySessionTimeout,\n    memoryContextLimit,\n    memoryContextThreshold,\n    memoryExcludePatterns,\n    enableDocs,\n    docsInclude,\n    docsExclude,\n    docsLinkCode,\n    docsContextLimit,\n    docsContextThreshold,\n    docsMaxFileSize,\n    docsSummarization,\n    enableData,\n    dataInclude,\n    dataExclude,\n    dataLinkCode,\n    dataContextLimit,\n    dataMaxFileSize,\n    dataMaxRows,\n    dataQueryLimit,\n    dataMaxResponseTokens,\n    ...(architectureLayers !== undefined ? { architectureLayers } : {}),\n  };\n}\n\nfunction _validateArchitectureLayers(raw: unknown): Record<string, string[]> | undefined {\n  if (raw === undefined || raw === null) return undefined;\n  if (typeof raw !== 'object' || Array.isArray(raw)) return undefined;\n  const result: Record<string, string[]> = {};\n  for (const [key, val] of Object.entries(raw as Record<string, unknown>)) {\n    if (typeof key !== 'string') continue;\n    if (!Array.isArray(val)) continue;\n    const patterns = val.filter((p): p is string => typeof p === 'string' && isSafeRegex(p));\n    if (patterns.length > 0) result[key] = patterns;\n  }\n  return Object.keys(result).length > 0 ? result : undefined;\n}\n\nfunction _validatePatterns(raw: unknown, fallback: string[]): string[] {\n  if (!Array.isArray(raw)) return fallback;\n  const valid: string[] = [];\n  for (const p of raw) {\n    if (typeof p !== 'string') continue;\n    if (!isSafeRegex(p)) {\n      logWarn(`Unsafe regex pattern skipped: ${p}`);\n      continue;\n    }\n    valid.push(p);\n  }\n  return valid;\n}\n\n// \u2500\u2500 Migration helpers \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/**\n * Upgrades shallow exclude patterns (e.g. \"node_modules/**\") to recursive ones\n * (e.g. \"** /node_modules/**\") so nested directories are excluded at any depth.\n */\nconst SHALLOW_TO_RECURSIVE: Record<string, string> = {\n  'node_modules/**': '**/node_modules/**',\n  'dist/**': '**/dist/**',\n  'build/**': '**/build/**',\n  '.git/**': '**/.git/**',\n  '.kirograph/**': '**/.kirograph/**',\n};\n\nfunction migrateExcludePatterns(patterns: string[]): string[] {\n  return patterns.map(p => SHALLOW_TO_RECURSIVE[p] ?? p);\n}\n\n// \u2500\u2500 Load / Save \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport async function loadConfig(projectRoot: string): Promise<KiroGraphConfig> {\n  const dir = path.join(projectRoot, KIROGRAPH_DIR);\n  const cfgPath = path.join(dir, CONFIG_FILE);\n\n  if (!fs.existsSync(cfgPath)) {\n    // Create default config file\n    const defaults = createDefaultConfig(projectRoot);\n    await fs.promises.mkdir(dir, { recursive: true });\n    await _writeAtomic(cfgPath, defaults);\n    return defaults;\n  }\n\n  let raw: unknown;\n  try {\n    const text = await fs.promises.readFile(cfgPath, 'utf8');\n    raw = JSON.parse(text);\n  } catch (err) {\n    logError('Config parse error', { path: cfgPath, error: err instanceof Error ? err.message : String(err) });\n    return createDefaultConfig(projectRoot);\n  }\n\n  const config = validateConfig(raw);\n\n  // Migrate v1 \u2192 v2: upgrade shallow exclude patterns to recursive\n  if (config.version < 2) {\n    config.version = 2;\n    config.exclude = migrateExcludePatterns(config.exclude);\n    await fs.promises.mkdir(dir, { recursive: true });\n    await _writeAtomic(cfgPath, config);\n  }\n\n  return config;\n}\n\nexport async function saveConfig(projectRoot: string, config: KiroGraphConfig): Promise<void> {\n  const dir = path.join(projectRoot, KIROGRAPH_DIR);\n  const cfgPath = path.join(dir, CONFIG_FILE);\n  await fs.promises.mkdir(dir, { recursive: true });\n  await _writeAtomic(cfgPath, config);\n}\n\nasync function _writeAtomic(cfgPath: string, config: KiroGraphConfig): Promise<void> {\n  const tmp = cfgPath + '.tmp';\n  await fs.promises.writeFile(tmp, JSON.stringify(config, null, 2), 'utf8');\n  await fs.promises.rename(tmp, cfgPath);\n}\n\n// \u2500\u2500 Update helpers \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport async function updateConfig(\n  projectRoot: string,\n  patch: Partial<KiroGraphConfig>\n): Promise<KiroGraphConfig> {\n  const current = await loadConfig(projectRoot);\n  const updated = validateConfig({ ...current, ...patch });\n  await saveConfig(projectRoot, updated);\n  return updated;\n}\n\nexport async function addIncludePatterns(projectRoot: string, patterns: string[]): Promise<void> {\n  const config = await loadConfig(projectRoot);\n  const existing = new Set(config.include);\n  const toAdd = patterns.filter(p => isSafeRegex(p) && !existing.has(p));\n  if (toAdd.length === 0) return;\n  await saveConfig(projectRoot, { ...config, include: [...config.include, ...toAdd] });\n}\n\nexport async function addExcludePatterns(projectRoot: string, patterns: string[]): Promise<void> {\n  const config = await loadConfig(projectRoot);\n  const existing = new Set(config.exclude);\n  const toAdd = patterns.filter(p => isSafeRegex(p) && !existing.has(p));\n  if (toAdd.length === 0) return;\n  await saveConfig(projectRoot, { ...config, exclude: [...config.exclude, ...toAdd] });\n}\n\n// \u2500\u2500 File inclusion check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function shouldIncludeFile(config: KiroGraphConfig, relPath: string): boolean {\n  // Check exclude patterns first\n  for (const pattern of config.exclude) {\n    if (picomatch(pattern)(relPath)) return false;\n  }\n  // If include patterns are specified, file must match at least one\n  if (config.include.length > 0) {\n    return config.include.some(pattern => picomatch(pattern)(relPath));\n  }\n  return true;\n}\n"],
+  "mappings": 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   "names": ["picomatch"]
 }

package/dist/core/pipeline.js

@@ -207,11 +207,38 @@ class IndexPipeline {
           const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);
           await docsIndexer.indexAll({
             force: opts?.force,
-            onProgress: (msg) => opts?.onProgress?.({ phase: "architecture", current: 0, total: 1, meta: { msg } })
+            onProgress: (msg) => opts?.onProgress?.({ phase: "docs", current: 0, total: 1, meta: { msg } })
           });
         } catch {
         }
       }
+      if (this.config.enableData) {
+        try {
+          const { DataIndexer } = await Promise.resolve().then(() => require("../data/indexer.js"));
+          this.db.applyDataSchema();
+          const dataIndexer = new DataIndexer(this.db.getRawDb(), this.config, this.projectRoot);
+          await dataIndexer.indexAll({
+            onProgress: (msg) => opts?.onProgress?.({ phase: "data", current: 0, total: 1, meta: { msg } })
+          });
+          if (this.config.enableArchitecture) {
+            try {
+              const rawDb = this.db.getRawDb();
+              const tableExists = rawDb.get("SELECT name FROM sqlite_master WHERE type='table' AND name='arch_file_layers'");
+              if (tableExists) {
+                const datasets = rawDb.all("SELECT file_path FROM data_datasets");
+                for (const ds of datasets) {
+                  rawDb.run(
+                    `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence) VALUES (?, ?, ?)`,
+                    [ds.file_path, "layer:data", 1]
+                  );
+                }
+              }
+            } catch {
+            }
+          }
+        } catch {
+        }
+      }
       this.lock.clearDirty();
       return { success: errors.length === 0, filesIndexed, nodesCreated, edgesCreated, errors, duration: Date.now() - start };
     } finally {
@@ -377,11 +404,38 @@ class IndexPipeline {
           this.db.applyDocsSchema();
           const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);
           await docsIndexer.indexAll({
-            onProgress: (msg) => onProgress?.({ phase: "architecture", current: 0, total: 1, meta: { msg } })
+            onProgress: (msg) => onProgress?.({ phase: "docs", current: 0, total: 1, meta: { msg } })
           });
         } catch {
         }
       }
+      if (this.config.enableData) {
+        try {
+          const { DataIndexer } = await Promise.resolve().then(() => require("../data/indexer.js"));
+          this.db.applyDataSchema();
+          const dataIndexer = new DataIndexer(this.db.getRawDb(), this.config, this.projectRoot);
+          await dataIndexer.indexAll({
+            onProgress: (msg) => onProgress?.({ phase: "data", current: 0, total: 1, meta: { msg } })
+          });
+          if (this.config.enableArchitecture) {
+            try {
+              const rawDb = this.db.getRawDb();
+              const tableExists = rawDb.get("SELECT name FROM sqlite_master WHERE type='table' AND name='arch_file_layers'");
+              if (tableExists) {
+                const datasets = rawDb.all("SELECT file_path FROM data_datasets");
+                for (const ds of datasets) {
+                  rawDb.run(
+                    `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence) VALUES (?, ?, ?)`,
+                    [ds.file_path, "layer:data", 1]
+                  );
+                }
+              }
+            } catch {
+            }
+          }
+        } catch {
+        }
+      }
       this.lock.clearDirty();
       result.duration = Date.now() - start;
       return result;

package/dist/core/pipeline.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/core/pipeline.ts"],
-  "sourcesContent": ["/**\n * IndexPipeline \u2014 full-index and incremental-sync pipelines.\n *\n * Owns the two heavy workflows:\n *   - indexAll(): scan all files, extract, store, resolve, detect frameworks,\n *                 generate embeddings, analyze architecture.\n *   - sync():     detect changed files via git (or full scan fallback),\n *                 re-extract only what changed, then run the same tail pipeline.\n *\n * Everything that touches the filesystem or sub-systems is injected via the\n * constructor, keeping this class testable and free of global state.\n */\n\nimport * as path from 'path';\nimport * as fs from 'fs';\nimport { GraphDatabase } from '../db/database';\nimport { scanDirectory, hashContent, getChangedFiles, shouldIncludeFile } from '../sync/index';\nimport { extractFile } from '../extraction/extractor';\nimport { clearParserCache, initGrammars, hasWasmGrammar } from '../extraction/grammars';\nimport { detectFrameworks } from '../frameworks/index';\nimport { ReferenceResolver } from '../resolution/index';\nimport { VectorManager } from '../vectors/index';\nimport { ArchitectureAnalyzer } from '../architecture/index';\nimport type { KiroGraphConfig } from '../config';\nimport type { IndexResult, IndexProgress, SyncResult } from '../types';\nimport { LockManager } from './lock-manager';\nimport { Mutex } from '../utils';\n\nconst FILE_IO_BATCH_SIZE = 10;\n\nexport class IndexPipeline {\n  private readonly mutex = new Mutex();\n\n  constructor(\n    private readonly db: GraphDatabase,\n    private readonly vectors: VectorManager,\n    private readonly resolver: ReferenceResolver,\n    private readonly arch: ArchitectureAnalyzer,\n    private readonly lock: LockManager,\n    private readonly config: KiroGraphConfig,\n    private readonly projectRoot: string,\n  ) {}\n\n  async indexAll(opts?: {\n    onProgress?: (p: IndexProgress) => void;\n    force?: boolean;\n    signal?: AbortSignal;\n  }): Promise<IndexResult> {\n    const release = await this.mutex.acquire();\n    this.lock.acquire();\n    const start = Date.now();\n    const errors: string[] = [];\n    let filesIndexed = 0;\n    let nodesCreated = 0;\n    let edgesCreated = 0;\n\n    // Track languages whose WASM parser is currently poisoned (ABORT=true on the module).\n    // Once a language's parser aborts, every subsequent parse call for that language\n    // fails instantly. We skip those files until clearParserCache + initGrammars succeeds.\n    const poisonedLanguages = new Set<string>();\n\n    try {\n      const files = await scanDirectory(this.projectRoot, this.config, opts?.signal);\n      opts?.onProgress?.({ phase: 'scanning', current: files.length, total: files.length });\n\n      // Batch-read files in parallel\n      const contentMap = new Map<string, Buffer>();\n      for (let b = 0; b < files.length; b += FILE_IO_BATCH_SIZE) {\n        const batch = files.slice(b, b + FILE_IO_BATCH_SIZE);\n        const results = await Promise.all(batch.map(f => fs.promises.readFile(f).catch(() => null)));\n        for (let i = 0; i < batch.length; i++) {\n          if (results[i]) contentMap.set(batch[i], results[i]!);\n        }\n      }\n\n      for (let i = 0; i < files.length; i++) {\n        const file = files[i];\n        opts?.onProgress?.({ phase: 'parsing', current: i + 1, total: files.length, currentFile: file });\n\n        try {\n          const content = contentMap.get(file);\n          if (!content) continue;\n          if (content.length > this.config.maxFileSize) continue;\n\n          const relPath = path.relative(this.projectRoot, file).replace(/\\\\/g, '/');\n\n          if (!opts?.force) {\n            const existing = this.db.getFile(relPath);\n            if (existing && hashContent(content) === existing.contentHash) continue;\n          }\n\n          // Skip files whose language parser is currently poisoned\n          const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n          const lang = detectLanguage(file);\n          if (poisonedLanguages.has(lang)) continue;\n\n          const extracted = await extractFile(file, this.projectRoot, content);\n          if (!extracted) continue;\n\n          const oldNodes = this.db.getNodesByFile(extracted.filePath);\n          if (oldNodes.length > 0) await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n          this.db.transaction(() => {\n            this.db.deleteNodesByFile(extracted.filePath);\n            this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n            this.db.upsertFile({\n              path: extracted.filePath,\n              contentHash: extracted.contentHash,\n              language: extracted.language,\n              fileSize: extracted.fileSize,\n              symbolCount: extracted.nodes.length,\n              indexedAt: Date.now(),\n            });\n            for (const node of extracted.nodes) { this.db.upsertNode(node); nodesCreated++; }\n            for (const edge of extracted.edges) { this.db.insertEdge(edge); edgesCreated++; }\n            for (const ref of extracted.unresolvedRefs) {\n              this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n            }\n          });\n\n          filesIndexed++;\n        } catch (err) {\n          const msg = err instanceof Error ? err.message : String(err);\n          errors.push(`${file}: ${msg}`);\n\n          // Detect WASM runtime abort and attempt recovery\n          const isWasmCrash = (err as any)?.constructor?.name === 'RuntimeError'\n            || msg.includes('Aborted(') \n            || msg.includes('RuntimeError')\n            || msg.includes('WASM grammar exists but failed to load');\n          if (isWasmCrash) {\n            // Mark the language as poisoned so we skip remaining files of this language\n            const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n            const lang = detectLanguage(file);\n            poisonedLanguages.add(lang);\n\n            clearParserCache();\n            try {\n              await initGrammars();\n              // Recovery succeeded \u2014 un-poison all languages\n              poisonedLanguages.clear();\n            } catch {\n              errors.push('WASM runtime unrecoverable after crash \u2014 aborting batch');\n              break;\n            }\n          }\n        }\n      }\n\n      // Re-process files that have symbolCount=0 but should have symbols (WASM recovery)\n      const emptyFiles = this.db.getAllFiles().filter(\n        (f: any) => f.symbolCount === 0 && hasWasmGrammar(f.language)\n      );\n      if (emptyFiles.length > 0) {\n        opts?.onProgress?.({ phase: 'retrying', current: 0, total: emptyFiles.length });\n        for (let i = 0; i < emptyFiles.length; i++) {\n          const ef = emptyFiles[i];\n          const absPath = path.join(this.projectRoot, ef.path);\n          opts?.onProgress?.({ phase: 'retrying', current: i + 1, total: emptyFiles.length, currentFile: absPath });\n          try {\n            const extracted = await extractFile(absPath, this.projectRoot);\n            if (!extracted || extracted.nodes.length === 0) continue;\n\n            const oldNodes = this.db.getNodesByFile(extracted.filePath);\n            if (oldNodes.length > 0) await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n            this.db.transaction(() => {\n              this.db.deleteNodesByFile(extracted.filePath);\n              this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n              this.db.upsertFile({\n                path: extracted.filePath,\n                contentHash: extracted.contentHash,\n                language: extracted.language,\n                fileSize: extracted.fileSize,\n                symbolCount: extracted.nodes.length,\n                indexedAt: Date.now(),\n              });\n              for (const node of extracted.nodes) { this.db.upsertNode(node); nodesCreated++; }\n              for (const edge of extracted.edges) { this.db.insertEdge(edge); edgesCreated++; }\n              for (const ref of extracted.unresolvedRefs) {\n                this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n              }\n            });\n            filesIndexed++;\n          } catch {\n            // Already logged in first pass or genuinely broken \u2014 skip\n          }\n        }\n      }\n\n      // Resolve cross-file references\n      opts?.onProgress?.({ phase: 'resolving', current: 0, total: 1 });\n      await this.resolver.resolveAll((current, total) => {\n        opts?.onProgress?.({ phase: 'resolving', current, total });\n      });\n\n      // Detect frameworks\n      opts?.onProgress?.({ phase: 'detecting frameworks', current: 0, total: 1 });\n      const detectedFrameworks = await detectFrameworks(this.projectRoot, this.db);\n      const languages = [...new Set(this.db.getAllFiles().map(f => (f as any).language).filter(Boolean))];\n      opts?.onProgress?.({\n        phase: 'detecting frameworks', current: 1, total: 1,\n        meta: { frameworks: detectedFrameworks.map(f => f.name), languages },\n      });\n\n      // Generate embeddings (if enabled)\n      if (this.vectors.isInitialized()) {\n        opts?.onProgress?.({ phase: 'embeddings', current: 0, total: 1 });\n        await this.vectors.embedAll((current, total) =>\n          opts?.onProgress?.({ phase: 'embeddings', current, total })\n        );\n      }\n\n      // Analyze architecture (if enabled)\n      if (this.config.enableArchitecture) {\n        opts?.onProgress?.({ phase: 'architecture', current: 0, total: 1 });\n        await this.arch.analyze(msg =>\n          opts?.onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } })\n        );\n        opts?.onProgress?.({ phase: 'architecture', current: 1, total: 1 });\n      }\n\n      // Index documentation (if enabled)\n      if (this.config.enableDocs) {\n        try {\n          const { DocsIndexer } = await Promise.resolve().then(() => require('../docs/indexer.js'));\n          this.db.applyDocsSchema();\n          const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await docsIndexer.indexAll({\n            force: opts?.force,\n            onProgress: msg => opts?.onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } }),\n          });\n        } catch { /* docs indexing is non-critical */ }\n      }\n\n      this.lock.clearDirty();\n      return { success: errors.length === 0, filesIndexed, nodesCreated, edgesCreated, errors, duration: Date.now() - start };\n    } finally {\n      this.lock.release();\n      release();\n    }\n  }\n\n  async sync(opts?: {\n    changedFiles?: string[];\n    onProgress?: (p: IndexProgress) => void;\n  }): Promise<SyncResult> {\n    const release = await this.mutex.acquire();\n    this.lock.acquire();\n    const start = Date.now();\n    const changedFiles = opts?.changedFiles;\n    const onProgress = opts?.onProgress;\n    const result: SyncResult = {\n      added: [], modified: [], removed: [],\n      nodesCreated: 0, nodesUpdated: 0, nodesRemoved: 0,\n      edgesCreated: 0, edgesRemoved: 0,\n      filesScanned: 0, errors: [], duration: 0,\n    };\n\n    try {\n      const removeFile = async (rel: string) => {\n        const oldNodes = this.db.getNodesByFile(rel);\n        const oldEdgeCount = this.db.getEdgesForNodes(oldNodes.map(n => n.id)).length;\n        result.nodesRemoved += oldNodes.length;\n        result.edgesRemoved += oldEdgeCount;\n        await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n        this.db.deleteFile(rel);\n        this.db.deleteUnresolvedRefsByFile(rel);\n        result.removed.push(rel);\n      };\n\n      // \u2500\u2500 Exclude-rule cleanup \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n      // Remove any indexed files that now match the current exclude patterns.\n      // This handles the case where a user adds a new exclude pattern (e.g.\n      // \"**/.vite/**\") and expects those files to disappear from the index on\n      // the next sync without needing a full --force re-index.\n      const allIndexed = this.db.getAllFiles();\n      for (const f of allIndexed) {\n        if (!shouldIncludeFile(f.path, this.config)) {\n          onProgress?.({ phase: 'scanning', current: 0, total: 0, meta: { excludeCleanup: true, file: f.path } });\n          await removeFile(f.path);\n        }\n      }\n\n      let filesToProcess: string[];\n\n      onProgress?.({ phase: 'scanning', current: 0, total: 0 });\n\n      if (changedFiles) {\n        filesToProcess = changedFiles.map(f => path.resolve(this.projectRoot, f));\n      } else {\n        const gitChanged = await getChangedFiles(this.projectRoot, this.config);\n        const hasChanges = gitChanged.added.length > 0 || gitChanged.modified.length > 0 || gitChanged.removed.length > 0;\n\n        if (hasChanges) {\n          for (const p of gitChanged.removed) {\n            await removeFile(path.relative(this.projectRoot, p).replace(/\\\\/g, '/'));\n          }\n          filesToProcess = [...gitChanged.added, ...gitChanged.modified];\n        } else {\n          // Fallback: full scan + detect removed files\n          const indexed = new Set(this.db.getAllFiles().map(f => f.path));\n          const current = new Set(\n            (await scanDirectory(this.projectRoot, this.config))\n              .map(f => path.relative(this.projectRoot, f).replace(/\\\\/g, '/'))\n          );\n          result.filesScanned = current.size;\n          for (const p of indexed) {\n            if (!current.has(p)) await removeFile(p);\n          }\n          filesToProcess = await scanDirectory(this.projectRoot, this.config);\n        }\n      }\n\n      result.filesScanned = result.filesScanned || filesToProcess.length;\n      onProgress?.({ phase: 'scanning', current: result.filesScanned, total: result.filesScanned });\n\n      const poisonedLanguages = new Set<string>();\n\n      for (let i = 0; i < filesToProcess.length; i++) {\n        const file = filesToProcess[i];\n        onProgress?.({ phase: 'parsing', current: i + 1, total: filesToProcess.length, currentFile: file });\n\n        if (!fs.existsSync(file)) {\n          const rel = path.relative(this.projectRoot, file).replace(/\\\\/g, '/');\n          await removeFile(rel);\n          continue;\n        }\n\n        try {\n          // Skip files whose language parser is currently poisoned\n          const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n          const lang = detectLanguage(file);\n          if (poisonedLanguages.has(lang)) continue;\n\n          const extracted = await extractFile(file, this.projectRoot);\n          if (!extracted) continue;\n\n          const existing = this.db.getFile(extracted.filePath);\n          const isNew = !existing;\n          if (!isNew && existing!.contentHash === extracted.contentHash) continue;\n\n          const oldNodes = this.db.getNodesByFile(extracted.filePath);\n          const oldEdgeCount = this.db.getEdgesForNodes(oldNodes.map(n => n.id)).length;\n          await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n          this.db.transaction(() => {\n            result.nodesRemoved += oldNodes.length;\n            result.edgesRemoved += oldEdgeCount;\n            this.db.deleteNodesByFile(extracted.filePath);\n            this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n            this.db.upsertFile({\n              path: extracted.filePath,\n              contentHash: extracted.contentHash,\n              language: extracted.language,\n              fileSize: extracted.fileSize,\n              symbolCount: extracted.nodes.length,\n              indexedAt: Date.now(),\n            });\n            for (const node of extracted.nodes) { this.db.upsertNode(node); result.nodesCreated++; }\n            for (const edge of extracted.edges) { this.db.insertEdge(edge); result.edgesCreated++; }\n            for (const ref of extracted.unresolvedRefs) {\n              this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n            }\n          });\n\n          this.resolver.invalidateFile(extracted.filePath);\n          if (isNew) result.added.push(extracted.filePath);\n          else { result.modified.push(extracted.filePath); result.nodesUpdated += extracted.nodes.length; }\n        } catch (err) {\n          const msg = err instanceof Error ? err.message : String(err);\n          result.errors.push(`${file}: ${msg}`);\n\n          // Detect WASM runtime abort and attempt recovery\n          const isWasmCrash = (err as any)?.constructor?.name === 'RuntimeError'\n            || msg.includes('Aborted(') \n            || msg.includes('RuntimeError')\n            || msg.includes('WASM grammar exists but failed to load');\n          if (isWasmCrash) {\n            const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n            const lang = detectLanguage(file);\n            poisonedLanguages.add(lang);\n\n            clearParserCache();\n            try {\n              await initGrammars();\n              poisonedLanguages.clear();\n            } catch {\n              result.errors.push('WASM runtime unrecoverable after crash \u2014 aborting sync');\n              break;\n            }\n          }\n        }\n      }\n\n      // Resolve cross-file references\n      onProgress?.({ phase: 'resolving', current: 0, total: 1 });\n      await this.resolver.resolveAll((current, total) => {\n        onProgress?.({ phase: 'resolving', current, total });\n      });\n\n      await detectFrameworks(this.projectRoot);\n\n      // Generate embeddings (if enabled)\n      if (this.vectors.isInitialized()) {\n        onProgress?.({ phase: 'embeddings', current: 0, total: 1 });\n        await this.vectors.embedAll((current, total) =>\n          onProgress?.({ phase: 'embeddings', current, total })\n        );\n      }\n\n      // Analyze architecture (if enabled)\n      if (this.config.enableArchitecture) {\n        onProgress?.({ phase: 'architecture', current: 0, total: 1 });\n        await this.arch.analyze(msg =>\n          onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } })\n        );\n        onProgress?.({ phase: 'architecture', current: 1, total: 1 });\n      }\n\n      // Re-index documentation (if enabled)\n      if (this.config.enableDocs) {\n        try {\n          const { DocsIndexer } = await Promise.resolve().then(() => require('../docs/indexer.js'));\n          this.db.applyDocsSchema();\n          const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await docsIndexer.indexAll({\n            onProgress: msg => onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } }),\n          });\n        } catch { /* docs indexing is non-critical */ }\n      }\n\n      this.lock.clearDirty();\n      result.duration = Date.now() - start;\n      return result;\n    } finally {\n      this.lock.release();\n      release();\n    }\n  }\n}\n"],
-  "mappings": 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+  "sourcesContent": ["/**\n * IndexPipeline \u2014 full-index and incremental-sync pipelines.\n *\n * Owns the two heavy workflows:\n *   - indexAll(): scan all files, extract, store, resolve, detect frameworks,\n *                 generate embeddings, analyze architecture.\n *   - sync():     detect changed files via git (or full scan fallback),\n *                 re-extract only what changed, then run the same tail pipeline.\n *\n * Everything that touches the filesystem or sub-systems is injected via the\n * constructor, keeping this class testable and free of global state.\n */\n\nimport * as path from 'path';\nimport * as fs from 'fs';\nimport { GraphDatabase } from '../db/database';\nimport { scanDirectory, hashContent, getChangedFiles, shouldIncludeFile } from '../sync/index';\nimport { extractFile } from '../extraction/extractor';\nimport { clearParserCache, initGrammars, hasWasmGrammar } from '../extraction/grammars';\nimport { detectFrameworks } from '../frameworks/index';\nimport { ReferenceResolver } from '../resolution/index';\nimport { VectorManager } from '../vectors/index';\nimport { ArchitectureAnalyzer } from '../architecture/index';\nimport type { KiroGraphConfig } from '../config';\nimport type { IndexResult, IndexProgress, SyncResult } from '../types';\nimport { LockManager } from './lock-manager';\nimport { Mutex } from '../utils';\n\nconst FILE_IO_BATCH_SIZE = 10;\n\nexport class IndexPipeline {\n  private readonly mutex = new Mutex();\n\n  constructor(\n    private readonly db: GraphDatabase,\n    private readonly vectors: VectorManager,\n    private readonly resolver: ReferenceResolver,\n    private readonly arch: ArchitectureAnalyzer,\n    private readonly lock: LockManager,\n    private readonly config: KiroGraphConfig,\n    private readonly projectRoot: string,\n  ) {}\n\n  async indexAll(opts?: {\n    onProgress?: (p: IndexProgress) => void;\n    force?: boolean;\n    signal?: AbortSignal;\n  }): Promise<IndexResult> {\n    const release = await this.mutex.acquire();\n    this.lock.acquire();\n    const start = Date.now();\n    const errors: string[] = [];\n    let filesIndexed = 0;\n    let nodesCreated = 0;\n    let edgesCreated = 0;\n\n    // Track languages whose WASM parser is currently poisoned (ABORT=true on the module).\n    // Once a language's parser aborts, every subsequent parse call for that language\n    // fails instantly. We skip those files until clearParserCache + initGrammars succeeds.\n    const poisonedLanguages = new Set<string>();\n\n    try {\n      const files = await scanDirectory(this.projectRoot, this.config, opts?.signal);\n      opts?.onProgress?.({ phase: 'scanning', current: files.length, total: files.length });\n\n      // Batch-read files in parallel\n      const contentMap = new Map<string, Buffer>();\n      for (let b = 0; b < files.length; b += FILE_IO_BATCH_SIZE) {\n        const batch = files.slice(b, b + FILE_IO_BATCH_SIZE);\n        const results = await Promise.all(batch.map(f => fs.promises.readFile(f).catch(() => null)));\n        for (let i = 0; i < batch.length; i++) {\n          if (results[i]) contentMap.set(batch[i], results[i]!);\n        }\n      }\n\n      for (let i = 0; i < files.length; i++) {\n        const file = files[i];\n        opts?.onProgress?.({ phase: 'parsing', current: i + 1, total: files.length, currentFile: file });\n\n        try {\n          const content = contentMap.get(file);\n          if (!content) continue;\n          if (content.length > this.config.maxFileSize) continue;\n\n          const relPath = path.relative(this.projectRoot, file).replace(/\\\\/g, '/');\n\n          if (!opts?.force) {\n            const existing = this.db.getFile(relPath);\n            if (existing && hashContent(content) === existing.contentHash) continue;\n          }\n\n          // Skip files whose language parser is currently poisoned\n          const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n          const lang = detectLanguage(file);\n          if (poisonedLanguages.has(lang)) continue;\n\n          const extracted = await extractFile(file, this.projectRoot, content);\n          if (!extracted) continue;\n\n          const oldNodes = this.db.getNodesByFile(extracted.filePath);\n          if (oldNodes.length > 0) await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n          this.db.transaction(() => {\n            this.db.deleteNodesByFile(extracted.filePath);\n            this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n            this.db.upsertFile({\n              path: extracted.filePath,\n              contentHash: extracted.contentHash,\n              language: extracted.language,\n              fileSize: extracted.fileSize,\n              symbolCount: extracted.nodes.length,\n              indexedAt: Date.now(),\n            });\n            for (const node of extracted.nodes) { this.db.upsertNode(node); nodesCreated++; }\n            for (const edge of extracted.edges) { this.db.insertEdge(edge); edgesCreated++; }\n            for (const ref of extracted.unresolvedRefs) {\n              this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n            }\n          });\n\n          filesIndexed++;\n        } catch (err) {\n          const msg = err instanceof Error ? err.message : String(err);\n          errors.push(`${file}: ${msg}`);\n\n          // Detect WASM runtime abort and attempt recovery\n          const isWasmCrash = (err as any)?.constructor?.name === 'RuntimeError'\n            || msg.includes('Aborted(') \n            || msg.includes('RuntimeError')\n            || msg.includes('WASM grammar exists but failed to load');\n          if (isWasmCrash) {\n            // Mark the language as poisoned so we skip remaining files of this language\n            const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n            const lang = detectLanguage(file);\n            poisonedLanguages.add(lang);\n\n            clearParserCache();\n            try {\n              await initGrammars();\n              // Recovery succeeded \u2014 un-poison all languages\n              poisonedLanguages.clear();\n            } catch {\n              errors.push('WASM runtime unrecoverable after crash \u2014 aborting batch');\n              break;\n            }\n          }\n        }\n      }\n\n      // Re-process files that have symbolCount=0 but should have symbols (WASM recovery)\n      const emptyFiles = this.db.getAllFiles().filter(\n        (f: any) => f.symbolCount === 0 && hasWasmGrammar(f.language)\n      );\n      if (emptyFiles.length > 0) {\n        opts?.onProgress?.({ phase: 'retrying', current: 0, total: emptyFiles.length });\n        for (let i = 0; i < emptyFiles.length; i++) {\n          const ef = emptyFiles[i];\n          const absPath = path.join(this.projectRoot, ef.path);\n          opts?.onProgress?.({ phase: 'retrying', current: i + 1, total: emptyFiles.length, currentFile: absPath });\n          try {\n            const extracted = await extractFile(absPath, this.projectRoot);\n            if (!extracted || extracted.nodes.length === 0) continue;\n\n            const oldNodes = this.db.getNodesByFile(extracted.filePath);\n            if (oldNodes.length > 0) await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n            this.db.transaction(() => {\n              this.db.deleteNodesByFile(extracted.filePath);\n              this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n              this.db.upsertFile({\n                path: extracted.filePath,\n                contentHash: extracted.contentHash,\n                language: extracted.language,\n                fileSize: extracted.fileSize,\n                symbolCount: extracted.nodes.length,\n                indexedAt: Date.now(),\n              });\n              for (const node of extracted.nodes) { this.db.upsertNode(node); nodesCreated++; }\n              for (const edge of extracted.edges) { this.db.insertEdge(edge); edgesCreated++; }\n              for (const ref of extracted.unresolvedRefs) {\n                this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n              }\n            });\n            filesIndexed++;\n          } catch {\n            // Already logged in first pass or genuinely broken \u2014 skip\n          }\n        }\n      }\n\n      // Resolve cross-file references\n      opts?.onProgress?.({ phase: 'resolving', current: 0, total: 1 });\n      await this.resolver.resolveAll((current, total) => {\n        opts?.onProgress?.({ phase: 'resolving', current, total });\n      });\n\n      // Detect frameworks\n      opts?.onProgress?.({ phase: 'detecting frameworks', current: 0, total: 1 });\n      const detectedFrameworks = await detectFrameworks(this.projectRoot, this.db);\n      const languages = [...new Set(this.db.getAllFiles().map(f => (f as any).language).filter(Boolean))];\n      opts?.onProgress?.({\n        phase: 'detecting frameworks', current: 1, total: 1,\n        meta: { frameworks: detectedFrameworks.map(f => f.name), languages },\n      });\n\n      // Generate embeddings (if enabled)\n      if (this.vectors.isInitialized()) {\n        opts?.onProgress?.({ phase: 'embeddings', current: 0, total: 1 });\n        await this.vectors.embedAll((current, total) =>\n          opts?.onProgress?.({ phase: 'embeddings', current, total })\n        );\n      }\n\n      // Analyze architecture (if enabled)\n      if (this.config.enableArchitecture) {\n        opts?.onProgress?.({ phase: 'architecture', current: 0, total: 1 });\n        await this.arch.analyze(msg =>\n          opts?.onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } })\n        );\n        opts?.onProgress?.({ phase: 'architecture', current: 1, total: 1 });\n      }\n\n      // Index documentation (if enabled)\n      if (this.config.enableDocs) {\n        try {\n          const { DocsIndexer } = await Promise.resolve().then(() => require('../docs/indexer.js'));\n          this.db.applyDocsSchema();\n          const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await docsIndexer.indexAll({\n      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const tableExists = rawDb.get(\"SELECT name FROM sqlite_master WHERE type='table' AND name='arch_file_layers'\");\n              if (tableExists) {\n                const datasets = rawDb.all('SELECT file_path FROM data_datasets') as Array<{ file_path: string }>;\n                for (const ds of datasets) {\n                  rawDb.run(\n                    `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence) VALUES (?, ?, ?)`,\n                    [ds.file_path, 'layer:data', 1.0],\n                  );\n                }\n              }\n            } catch { /* non-critical */ }\n          }\n        } catch { /* data indexing is non-critical */ }\n      }\n\n      this.lock.clearDirty();\n      return { success: errors.length === 0, filesIndexed, nodesCreated, edgesCreated, errors, duration: Date.now() - start };\n    } finally {\n      this.lock.release();\n      release();\n    }\n  }\n\n  async sync(opts?: {\n    changedFiles?: string[];\n    onProgress?: (p: IndexProgress) => void;\n  }): Promise<SyncResult> {\n    const release = await this.mutex.acquire();\n    this.lock.acquire();\n    const start = Date.now();\n    const changedFiles = opts?.changedFiles;\n    const onProgress = opts?.onProgress;\n    const result: SyncResult = {\n      added: [], modified: [], removed: [],\n      nodesCreated: 0, nodesUpdated: 0, nodesRemoved: 0,\n      edgesCreated: 0, edgesRemoved: 0,\n      filesScanned: 0, errors: [], duration: 0,\n    };\n\n    try {\n      const removeFile = async (rel: string) => {\n        const oldNodes = this.db.getNodesByFile(rel);\n        const oldEdgeCount = this.db.getEdgesForNodes(oldNodes.map(n => n.id)).length;\n        result.nodesRemoved += oldNodes.length;\n        result.edgesRemoved += oldEdgeCount;\n        await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n        this.db.deleteFile(rel);\n        this.db.deleteUnresolvedRefsByFile(rel);\n        result.removed.push(rel);\n      };\n\n      // \u2500\u2500 Exclude-rule cleanup \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n      // Remove any indexed files that now match the current exclude patterns.\n      // This handles the case where a user adds a new exclude pattern (e.g.\n      // \"**/.vite/**\") and expects those files to disappear from the index on\n      // the next sync without needing a full --force re-index.\n      const allIndexed = this.db.getAllFiles();\n      for (const f of allIndexed) {\n        if (!shouldIncludeFile(f.path, this.config)) {\n          onProgress?.({ phase: 'scanning', current: 0, total: 0, meta: { excludeCleanup: true, file: f.path } });\n          await removeFile(f.path);\n        }\n      }\n\n      let filesToProcess: string[];\n\n      onProgress?.({ phase: 'scanning', current: 0, total: 0 });\n\n      if (changedFiles) {\n        filesToProcess = changedFiles.map(f => path.resolve(this.projectRoot, f));\n      } else {\n        const gitChanged = await getChangedFiles(this.projectRoot, this.config);\n        const hasChanges = gitChanged.added.length > 0 || gitChanged.modified.length > 0 || gitChanged.removed.length > 0;\n\n        if (hasChanges) {\n          for (const p of gitChanged.removed) {\n            await removeFile(path.relative(this.projectRoot, p).replace(/\\\\/g, '/'));\n          }\n          filesToProcess = [...gitChanged.added, ...gitChanged.modified];\n        } else {\n          // Fallback: full scan + detect removed files\n          const indexed = new Set(this.db.getAllFiles().map(f => f.path));\n          const current = new Set(\n            (await scanDirectory(this.projectRoot, this.config))\n              .map(f => path.relative(this.projectRoot, f).replace(/\\\\/g, '/'))\n          );\n          result.filesScanned = current.size;\n          for (const p of indexed) {\n            if (!current.has(p)) await removeFile(p);\n          }\n          filesToProcess = await scanDirectory(this.projectRoot, this.config);\n        }\n      }\n\n      result.filesScanned = result.filesScanned || filesToProcess.length;\n      onProgress?.({ phase: 'scanning', current: result.filesScanned, total: result.filesScanned });\n\n      const poisonedLanguages = new Set<string>();\n\n      for (let i = 0; i < filesToProcess.length; i++) {\n        const file = filesToProcess[i];\n        onProgress?.({ phase: 'parsing', current: i + 1, total: filesToProcess.length, currentFile: file });\n\n        if (!fs.existsSync(file)) {\n          const rel = path.relative(this.projectRoot, file).replace(/\\\\/g, '/');\n          await removeFile(rel);\n          continue;\n        }\n\n        try {\n          // Skip files whose language parser is currently poisoned\n          const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n          const lang = detectLanguage(file);\n          if (poisonedLanguages.has(lang)) continue;\n\n          const extracted = await extractFile(file, this.projectRoot);\n          if (!extracted) continue;\n\n          const existing = this.db.getFile(extracted.filePath);\n          const isNew = !existing;\n          if (!isNew && existing!.contentHash === extracted.contentHash) continue;\n\n          const oldNodes = this.db.getNodesByFile(extracted.filePath);\n          const oldEdgeCount = this.db.getEdgesForNodes(oldNodes.map(n => n.id)).length;\n          await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n          this.db.transaction(() => {\n            result.nodesRemoved += oldNodes.length;\n            result.edgesRemoved += oldEdgeCount;\n            this.db.deleteNodesByFile(extracted.filePath);\n            this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n            this.db.upsertFile({\n              path: extracted.filePath,\n              contentHash: extracted.contentHash,\n              language: extracted.language,\n              fileSize: extracted.fileSize,\n              symbolCount: extracted.nodes.length,\n              indexedAt: Date.now(),\n            });\n            for (const node of extracted.nodes) { this.db.upsertNode(node); result.nodesCreated++; }\n            for (const edge of extracted.edges) { this.db.insertEdge(edge); result.edgesCreated++; }\n            for (const ref of extracted.unresolvedRefs) {\n              this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n            }\n          });\n\n          this.resolver.invalidateFile(extracted.filePath);\n          if (isNew) result.added.push(extracted.filePath);\n          else { result.modified.push(extracted.filePath); result.nodesUpdated += extracted.nodes.length; }\n        } catch (err) {\n          const msg = err instanceof Error ? err.message : String(err);\n          result.errors.push(`${file}: ${msg}`);\n\n          // Detect WASM runtime abort and attempt recovery\n          const isWasmCrash = (err as any)?.constructor?.name === 'RuntimeError'\n            || msg.includes('Aborted(') \n            || msg.includes('RuntimeError')\n            || msg.includes('WASM grammar exists but failed to load');\n          if (isWasmCrash) {\n            const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n            const lang = detectLanguage(file);\n            poisonedLanguages.add(lang);\n\n            clearParserCache();\n            try {\n              await initGrammars();\n              poisonedLanguages.clear();\n            } catch {\n              result.errors.push('WASM runtime unrecoverable after crash \u2014 aborting sync');\n              break;\n            }\n          }\n        }\n      }\n\n      // Resolve cross-file references\n      onProgress?.({ phase: 'resolving', current: 0, total: 1 });\n      await this.resolver.resolveAll((current, total) => {\n        onProgress?.({ phase: 'resolving', current, total });\n      });\n\n      await detectFrameworks(this.projectRoot);\n\n      // Generate embeddings (if enabled)\n      if (this.vectors.isInitialized()) {\n        onProgress?.({ phase: 'embeddings', current: 0, total: 1 });\n        await this.vectors.embedAll((current, total) =>\n          onProgress?.({ phase: 'embeddings', current, total })\n        );\n      }\n\n      // Analyze architecture (if enabled)\n      if (this.config.enableArchitecture) {\n        onProgress?.({ phase: 'architecture', current: 0, total: 1 });\n        await this.arch.analyze(msg =>\n          onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } })\n        );\n        onProgress?.({ phase: 'architecture', current: 1, total: 1 });\n      }\n\n      // Re-index documentation (if enabled)\n      if (this.config.enableDocs) {\n        try {\n          const { DocsIndexer } = await Promise.resolve().then(() => require('../docs/indexer.js'));\n          this.db.applyDocsSchema();\n          const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await docsIndexer.indexAll({\n            onProgress: msg => onProgress?.({ phase: 'docs', current: 0, total: 1, meta: { msg } }),\n          });\n        } catch { /* docs indexing is non-critical */ }\n      }\n\n      // Re-index data files (if enabled)\n      if ((this.config as any).enableData) {\n        try {\n          const { DataIndexer } = await Promise.resolve().then(() => require('../data/indexer.js'));\n          this.db.applyDataSchema();\n          const dataIndexer = new DataIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await dataIndexer.indexAll({\n            onProgress: msg => onProgress?.({ phase: 'data', current: 0, total: 1, meta: { msg } }),\n          });\n\n          // Assign data files to 'data' architecture layer if architecture is enabled\n          if (this.config.enableArchitecture) {\n            try {\n              const rawDb = this.db.getRawDb();\n              const tableExists = rawDb.get(\"SELECT name FROM sqlite_master WHERE type='table' AND name='arch_file_layers'\");\n              if (tableExists) {\n                const datasets = rawDb.all('SELECT file_path FROM data_datasets') as Array<{ file_path: string }>;\n                for (const ds of datasets) {\n                  rawDb.run(\n                    `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence) VALUES (?, ?, ?)`,\n                    [ds.file_path, 'layer:data', 1.0],\n                  );\n                }\n              }\n            } catch { /* non-critical */ }\n          }\n        } catch { /* data indexing is non-critical */ }\n      }\n\n      this.lock.clearDirty();\n      result.duration = Date.now() - start;\n      return result;\n    } finally {\n      this.lock.release();\n      release();\n    }\n  }\n}\n"],
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