kirograph 0.14.0 → 0.15.0

package/dist/config.js

@@ -68,6 +68,14 @@ const KNOWN_FIELDS = /* @__PURE__ */ new Set([
   "cavemanMode",
   "shellCompressionLevel",
   "syncWarningThreshold",
+  "enableMemory",
+  "memorySearchAlpha",
+  "memoryKeepRaw",
+  "memoryMaxObservations",
+  "memorySessionTimeout",
+  "memoryContextLimit",
+  "memoryContextThreshold",
+  "memoryExcludePatterns",
   // Legacy aliases (still accepted, mapped during validation)
   "enableCompression",
   "compressionLevel"
@@ -101,7 +109,15 @@ function createDefaultConfig(_projectRoot) {
     enableArchitecture: false,
     cavemanMode: "off",
     shellCompressionLevel: "normal",
-    syncWarningThreshold: 10
+    syncWarningThreshold: 10,
+    enableMemory: false,
+    memorySearchAlpha: 0.5,
+    memoryKeepRaw: false,
+    memoryMaxObservations: 1e4,
+    memorySessionTimeout: 7200,
+    memoryContextLimit: 3,
+    memoryContextThreshold: 0.3,
+    memoryExcludePatterns: []
   };
 }
 function validateConfig(config) {
@@ -147,6 +163,14 @@ function validateConfig(config) {
     shellCompressionLevel = defaults.shellCompressionLevel;
   }
   const syncWarningThreshold = typeof raw.syncWarningThreshold === "number" && raw.syncWarningThreshold >= 0 ? Math.round(raw.syncWarningThreshold) : defaults.syncWarningThreshold;
+  const enableMemory = typeof raw.enableMemory === "boolean" ? raw.enableMemory : defaults.enableMemory;
+  const memorySearchAlpha = typeof raw.memorySearchAlpha === "number" && raw.memorySearchAlpha >= 0 && raw.memorySearchAlpha <= 1 ? raw.memorySearchAlpha : defaults.memorySearchAlpha;
+  const memoryKeepRaw = typeof raw.memoryKeepRaw === "boolean" ? raw.memoryKeepRaw : defaults.memoryKeepRaw;
+  const memoryMaxObservations = typeof raw.memoryMaxObservations === "number" && raw.memoryMaxObservations >= 0 ? Math.round(raw.memoryMaxObservations) : defaults.memoryMaxObservations;
+  const memorySessionTimeout = typeof raw.memorySessionTimeout === "number" && raw.memorySessionTimeout > 0 ? Math.round(raw.memorySessionTimeout) : defaults.memorySessionTimeout;
+  const memoryContextLimit = typeof raw.memoryContextLimit === "number" && raw.memoryContextLimit >= 0 ? Math.round(raw.memoryContextLimit) : defaults.memoryContextLimit;
+  const memoryContextThreshold = typeof raw.memoryContextThreshold === "number" && raw.memoryContextThreshold >= 0 && raw.memoryContextThreshold <= 1 ? raw.memoryContextThreshold : defaults.memoryContextThreshold;
+  const memoryExcludePatterns = Array.isArray(raw.memoryExcludePatterns) && raw.memoryExcludePatterns.every((p) => typeof p === "string") ? raw.memoryExcludePatterns : defaults.memoryExcludePatterns;
   const include = _validatePatterns(raw.include, defaults.include);
   const exclude = _validatePatterns(raw.exclude, defaults.exclude);
   return {
@@ -171,6 +195,14 @@ function validateConfig(config) {
     cavemanMode,
     shellCompressionLevel,
     syncWarningThreshold,
+    enableMemory,
+    memorySearchAlpha,
+    memoryKeepRaw,
+    memoryMaxObservations,
+    memorySessionTimeout,
+    memoryContextLimit,
+    memoryContextThreshold,
+    memoryExcludePatterns,
     ...architectureLayers !== void 0 ? { architectureLayers } : {}
   };
 }

package/dist/config.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../src/config.ts"],
-  "sourcesContent": ["/**\n * KiroGraph Config System\n *\n * Mirrors CodeGraph src/config.ts \u2014 load, save, validate, and provide defaults\n * for KiroGraph configuration.\n */\n\nimport * as fs from 'fs';\nimport * as path from 'path';\nimport picomatch from 'picomatch';\nimport { logWarn, logError } from './errors';\n\n// \u2500\u2500 Types \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport interface KiroGraphConfig {\n  version: number;\n  languages: string[];\n  include: string[];\n  exclude: string[];\n  maxFileSize: number;\n  extractDocstrings: boolean;\n  trackCallSites: boolean;\n  // Parity fields:\n  enableEmbeddings: boolean;\n  embeddingModel: string;\n  embeddingDim: number;\n  /** @deprecated Use semanticEngine instead. Kept for backwards compatibility. */\n  useVecIndex: boolean;\n  semanticEngine: 'cosine' | 'sqlite-vec' | 'orama' | 'pglite' | 'lancedb' | 'qdrant' | 'typesense';\n  typesenseDashboard: boolean;\n  qdrantDashboard: boolean;\n  minLogLevel: 'debug' | 'info' | 'warn' | 'error';\n  frameworkHints: string[];\n  fuzzyResolutionThreshold: number; // 0.0\u20131.0\n  /** Enable architecture analysis (package graph + layer detection). Default: false. */\n  enableArchitecture: boolean;\n  /**\n   * User-defined layer \u2192 glob pattern overrides.\n   * When set, config-defined layers win over auto-detected ones.\n   * Example: { \"api\": [\"src/routes/**\", \"src/controllers/**\"] }\n   */\n  architectureLayers?: Record<string, string[]>;\n  /** Agent communication style injected at agentSpawn. Default: 'off'. */\n  cavemanMode: 'off' | 'lite' | 'full' | 'ultra';\n  /** Shell compression level for kirograph_exec. 'off' disables the hook/steering. Default: 'normal'. */\n  shellCompressionLevel: 'off' | 'normal' | 'aggressive' | 'ultra';\n  /**\n   * Number of pending (unindexed) files above which kirograph_status warns the agent.\n   * Set to 0 to disable the warning. Default: 10.\n   */\n  syncWarningThreshold: number;\n}\n\n// \u2500\u2500 Constants \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nconst KIROGRAPH_DIR = '.kirograph';\nconst CONFIG_FILE = 'config.json';\n\nconst KNOWN_FIELDS = new Set<string>([\n  'version', 'languages', 'include', 'exclude', 'maxFileSize',\n  'extractDocstrings', 'trackCallSites', 'enableEmbeddings', 'embeddingModel', 'embeddingDim',\n  'useVecIndex', 'semanticEngine', 'typesenseDashboard', 'qdrantDashboard',\n  'minLogLevel', 'frameworkHints', 'fuzzyResolutionThreshold',\n  'enableArchitecture', 'architectureLayers', 'cavemanMode', 'shellCompressionLevel', 'syncWarningThreshold',\n  // Legacy aliases (still accepted, mapped during validation)\n  'enableCompression', 'compressionLevel',\n]);\n\nconst LOG_LEVELS = new Set(['debug', 'info', 'warn', 'error']);\n\n// \u2500\u2500 ReDoS-safe regex check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/**\n * Returns false if the pattern is potentially dangerous (ReDoS risk) or too long.\n * Checks for catastrophic backtracking patterns like (a+)+ or (a|a)+.\n */\nexport function isSafeRegex(pattern: string): boolean {\n  if (pattern.length > 100) return false;\n  // Detect nested quantifiers: (x+)+ or (x*)+ or (x+)* etc.\n  if (/\\([^)]*[+*][^)]*\\)[+*?]/.test(pattern)) return false;\n  // Detect alternation with overlap: (a|a)+ style\n  if (/\\([^)]*\\|[^)]*\\)[+*]/.test(pattern)) return false;\n  return true;\n}\n\n// \u2500\u2500 Default config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function createDefaultConfig(_projectRoot?: string): KiroGraphConfig {\n  return {\n    version: 2,\n    languages: [],\n    include: [],\n    exclude: ['**/node_modules/**', '**/dist/**', '**/build/**', '**/.git/**', '*.min.js', '**/.kirograph/**'],\n    maxFileSize: 1_048_576,\n    extractDocstrings: true,\n    trackCallSites: true,\n    enableEmbeddings: false,\n    embeddingModel: 'nomic-ai/nomic-embed-text-v1.5',\n    embeddingDim: 768,\n    useVecIndex: false,\n    semanticEngine: 'cosine',\n    typesenseDashboard: false,\n    qdrantDashboard: false,\n    minLogLevel: 'warn',\n    frameworkHints: [],\n    fuzzyResolutionThreshold: 0.5,\n    enableArchitecture: false,\n    cavemanMode: 'off',\n    shellCompressionLevel: 'normal',\n    syncWarningThreshold: 10,\n  };\n}\n\n// \u2500\u2500 Validation \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function validateConfig(config: unknown): KiroGraphConfig {\n  const defaults = createDefaultConfig();\n\n  if (typeof config !== 'object' || config === null) {\n    return defaults;\n  }\n\n  const raw = config as Record<string, unknown>;\n\n  // Warn about unknown fields\n  for (const key of Object.keys(raw)) {\n    if (!KNOWN_FIELDS.has(key)) {\n      logWarn(`Unknown config field: ${key}`);\n    }\n  }\n\n  // Validate and coerce each field\n  const version = typeof raw.version === 'number' ? raw.version : defaults.version;\n  const languages = Array.isArray(raw.languages) && raw.languages.every(l => typeof l === 'string')\n    ? (raw.languages as string[])\n    : defaults.languages;\n  const maxFileSize = typeof raw.maxFileSize === 'number' && raw.maxFileSize > 0\n    ? raw.maxFileSize\n    : defaults.maxFileSize;\n  const extractDocstrings = typeof raw.extractDocstrings === 'boolean'\n    ? raw.extractDocstrings\n    : defaults.extractDocstrings;\n  const trackCallSites = typeof raw.trackCallSites === 'boolean'\n    ? raw.trackCallSites\n    : defaults.trackCallSites;\n  const enableEmbeddings = typeof raw.enableEmbeddings === 'boolean'\n    ? raw.enableEmbeddings\n    : defaults.enableEmbeddings;\n  const embeddingModel = typeof raw.embeddingModel === 'string' && raw.embeddingModel.length > 0\n    ? raw.embeddingModel\n    : defaults.embeddingModel;\n  const embeddingDim = typeof raw.embeddingDim === 'number' && raw.embeddingDim > 0\n    ? raw.embeddingDim\n    : defaults.embeddingDim;\n  const useVecIndex = typeof raw.useVecIndex === 'boolean'\n    ? raw.useVecIndex\n    : defaults.useVecIndex;\n  const SEMANTIC_ENGINES = new Set(['cosine', 'sqlite-vec', 'orama', 'pglite', 'lancedb', 'qdrant', 'typesense']);\n  // useVecIndex is a legacy alias: if set and no explicit semanticEngine, map it\n  const semanticEngine = typeof raw.semanticEngine === 'string' && SEMANTIC_ENGINES.has(raw.semanticEngine)\n    ? (raw.semanticEngine as KiroGraphConfig['semanticEngine'])\n    : useVecIndex ? 'sqlite-vec' : defaults.semanticEngine;\n  const typesenseDashboard = typeof raw.typesenseDashboard === 'boolean'\n    ? raw.typesenseDashboard\n    : defaults.typesenseDashboard;\n  const qdrantDashboard = typeof raw.qdrantDashboard === 'boolean'\n    ? raw.qdrantDashboard\n    : defaults.qdrantDashboard;\n  const minLogLevel = typeof raw.minLogLevel === 'string' && LOG_LEVELS.has(raw.minLogLevel)\n    ? (raw.minLogLevel as KiroGraphConfig['minLogLevel'])\n    : defaults.minLogLevel;\n  const frameworkHints = Array.isArray(raw.frameworkHints) && raw.frameworkHints.every(h => typeof h === 'string')\n    ? (raw.frameworkHints as string[])\n    : defaults.frameworkHints;\n  const fuzzyResolutionThreshold = typeof raw.fuzzyResolutionThreshold === 'number'\n    && raw.fuzzyResolutionThreshold >= 0\n    && raw.fuzzyResolutionThreshold <= 1\n    ? raw.fuzzyResolutionThreshold\n    : defaults.fuzzyResolutionThreshold;\n  const enableArchitecture = typeof raw.enableArchitecture === 'boolean'\n    ? raw.enableArchitecture\n    : defaults.enableArchitecture;\n  const architectureLayers = _validateArchitectureLayers(raw.architectureLayers);\n  const CAVEMAN_MODES = new Set(['off', 'lite', 'full', 'ultra']);\n  const cavemanMode = typeof raw.cavemanMode === 'string' && CAVEMAN_MODES.has(raw.cavemanMode)\n    ? (raw.cavemanMode as KiroGraphConfig['cavemanMode'])\n    : defaults.cavemanMode;\n  const COMPRESSION_LEVELS = new Set(['off', 'normal', 'aggressive', 'ultra']);\n  // Support legacy field names: enableCompression (boolean) and compressionLevel (string)\n  let shellCompressionLevel: KiroGraphConfig['shellCompressionLevel'];\n  if (typeof raw.shellCompressionLevel === 'string' && COMPRESSION_LEVELS.has(raw.shellCompressionLevel)) {\n    shellCompressionLevel = raw.shellCompressionLevel as KiroGraphConfig['shellCompressionLevel'];\n  } else if (typeof raw.compressionLevel === 'string' && COMPRESSION_LEVELS.has(raw.compressionLevel)) {\n    shellCompressionLevel = raw.compressionLevel as KiroGraphConfig['shellCompressionLevel'];\n  } else if (typeof raw.enableCompression === 'boolean') {\n    shellCompressionLevel = raw.enableCompression ? 'normal' : 'off';\n  } else {\n    shellCompressionLevel = defaults.shellCompressionLevel;\n  }\n  const syncWarningThreshold = typeof raw.syncWarningThreshold === 'number' && raw.syncWarningThreshold >= 0\n    ? Math.round(raw.syncWarningThreshold)\n    : defaults.syncWarningThreshold;\n\n  // Validate glob patterns \u2014 exclude unsafe regex patterns\n  const include = _validatePatterns(raw.include, defaults.include);\n  const exclude = _validatePatterns(raw.exclude, defaults.exclude);\n\n  return {\n    version,\n    languages,\n    include,\n    exclude,\n    maxFileSize,\n    extractDocstrings,\n    trackCallSites,\n    enableEmbeddings,\n    embeddingModel,\n    embeddingDim,\n    useVecIndex,\n    semanticEngine,\n    typesenseDashboard,\n    qdrantDashboard,\n    minLogLevel,\n    frameworkHints,\n    fuzzyResolutionThreshold,\n    enableArchitecture,\n    cavemanMode,\n    shellCompressionLevel,\n    syncWarningThreshold,\n    ...(architectureLayers !== undefined ? { architectureLayers } : {}),\n  };\n}\n\nfunction _validateArchitectureLayers(raw: unknown): Record<string, string[]> | undefined {\n  if (raw === undefined || raw === null) return undefined;\n  if (typeof raw !== 'object' || Array.isArray(raw)) return undefined;\n  const result: Record<string, string[]> = {};\n  for (const [key, val] of Object.entries(raw as Record<string, unknown>)) {\n    if (typeof key !== 'string') continue;\n    if (!Array.isArray(val)) continue;\n    const patterns = val.filter((p): p is string => typeof p === 'string' && isSafeRegex(p));\n    if (patterns.length > 0) result[key] = patterns;\n  }\n  return Object.keys(result).length > 0 ? result : undefined;\n}\n\nfunction _validatePatterns(raw: unknown, fallback: string[]): string[] {\n  if (!Array.isArray(raw)) return fallback;\n  const valid: string[] = [];\n  for (const p of raw) {\n    if (typeof p !== 'string') continue;\n    if (!isSafeRegex(p)) {\n      logWarn(`Unsafe regex pattern skipped: ${p}`);\n      continue;\n    }\n    valid.push(p);\n  }\n  return valid;\n}\n\n// \u2500\u2500 Migration helpers \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/**\n * Upgrades shallow exclude patterns (e.g. \"node_modules/**\") to recursive ones\n * (e.g. \"** /node_modules/**\") so nested directories are excluded at any depth.\n */\nconst SHALLOW_TO_RECURSIVE: Record<string, string> = {\n  'node_modules/**': '**/node_modules/**',\n  'dist/**': '**/dist/**',\n  'build/**': '**/build/**',\n  '.git/**': '**/.git/**',\n  '.kirograph/**': '**/.kirograph/**',\n};\n\nfunction migrateExcludePatterns(patterns: string[]): string[] {\n  return patterns.map(p => SHALLOW_TO_RECURSIVE[p] ?? p);\n}\n\n// \u2500\u2500 Load / Save \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport async function loadConfig(projectRoot: string): Promise<KiroGraphConfig> {\n  const dir = path.join(projectRoot, KIROGRAPH_DIR);\n  const cfgPath = path.join(dir, CONFIG_FILE);\n\n  if (!fs.existsSync(cfgPath)) {\n    // Create default config file\n    const defaults = createDefaultConfig(projectRoot);\n    await fs.promises.mkdir(dir, { recursive: true });\n    await _writeAtomic(cfgPath, defaults);\n    return defaults;\n  }\n\n  let raw: unknown;\n  try {\n    const text = await fs.promises.readFile(cfgPath, 'utf8');\n    raw = JSON.parse(text);\n  } catch (err) {\n    logError('Config parse error', { path: cfgPath, error: err instanceof Error ? err.message : String(err) });\n    return createDefaultConfig(projectRoot);\n  }\n\n  const config = validateConfig(raw);\n\n  // Migrate v1 \u2192 v2: upgrade shallow exclude patterns to recursive\n  if (config.version < 2) {\n    config.version = 2;\n    config.exclude = migrateExcludePatterns(config.exclude);\n    await fs.promises.mkdir(dir, { recursive: true });\n    await _writeAtomic(cfgPath, config);\n  }\n\n  return config;\n}\n\nexport async function saveConfig(projectRoot: string, config: KiroGraphConfig): Promise<void> {\n  const dir = path.join(projectRoot, KIROGRAPH_DIR);\n  const cfgPath = path.join(dir, CONFIG_FILE);\n  await fs.promises.mkdir(dir, { recursive: true });\n  await _writeAtomic(cfgPath, config);\n}\n\nasync function _writeAtomic(cfgPath: string, config: KiroGraphConfig): Promise<void> {\n  const tmp = cfgPath + '.tmp';\n  await fs.promises.writeFile(tmp, JSON.stringify(config, null, 2), 'utf8');\n  await fs.promises.rename(tmp, cfgPath);\n}\n\n// \u2500\u2500 Update helpers \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport async function updateConfig(\n  projectRoot: string,\n  patch: Partial<KiroGraphConfig>\n): Promise<KiroGraphConfig> {\n  const current = await loadConfig(projectRoot);\n  const updated = validateConfig({ ...current, ...patch });\n  await saveConfig(projectRoot, updated);\n  return updated;\n}\n\nexport async function addIncludePatterns(projectRoot: string, patterns: string[]): Promise<void> {\n  const config = await loadConfig(projectRoot);\n  const existing = new Set(config.include);\n  const toAdd = patterns.filter(p => isSafeRegex(p) && !existing.has(p));\n  if (toAdd.length === 0) return;\n  await saveConfig(projectRoot, { ...config, include: [...config.include, ...toAdd] });\n}\n\nexport async function addExcludePatterns(projectRoot: string, patterns: string[]): Promise<void> {\n  const config = await loadConfig(projectRoot);\n  const existing = new Set(config.exclude);\n  const toAdd = patterns.filter(p => isSafeRegex(p) && !existing.has(p));\n  if (toAdd.length === 0) return;\n  await saveConfig(projectRoot, { ...config, exclude: [...config.exclude, ...toAdd] });\n}\n\n// \u2500\u2500 File inclusion check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function shouldIncludeFile(config: KiroGraphConfig, relPath: string): boolean {\n  // Check exclude patterns first\n  for (const pattern of config.exclude) {\n    if (picomatch(pattern)(relPath)) return false;\n  }\n  // If include patterns are specified, file must match at least one\n  if (config.include.length > 0) {\n    return config.include.some(pattern => picomatch(pattern)(relPath));\n  }\n  return true;\n}\n"],
-  "mappings": 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+  "sourcesContent": ["/**\n * KiroGraph Config System\n *\n * Mirrors CodeGraph src/config.ts \u2014 load, save, validate, and provide defaults\n * for KiroGraph configuration.\n */\n\nimport * as fs from 'fs';\nimport * as path from 'path';\nimport picomatch from 'picomatch';\nimport { logWarn, logError } from './errors';\n\n// \u2500\u2500 Types \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport interface KiroGraphConfig {\n  version: number;\n  languages: string[];\n  include: string[];\n  exclude: string[];\n  maxFileSize: number;\n  extractDocstrings: boolean;\n  trackCallSites: boolean;\n  // Parity fields:\n  enableEmbeddings: boolean;\n  embeddingModel: string;\n  embeddingDim: number;\n  /** @deprecated Use semanticEngine instead. Kept for backwards compatibility. */\n  useVecIndex: boolean;\n  semanticEngine: 'cosine' | 'sqlite-vec' | 'orama' | 'pglite' | 'lancedb' | 'qdrant' | 'typesense';\n  typesenseDashboard: boolean;\n  qdrantDashboard: boolean;\n  minLogLevel: 'debug' | 'info' | 'warn' | 'error';\n  frameworkHints: string[];\n  fuzzyResolutionThreshold: number; // 0.0\u20131.0\n  /** Enable architecture analysis (package graph + layer detection). Default: false. */\n  enableArchitecture: boolean;\n  /**\n   * User-defined layer \u2192 glob pattern overrides.\n   * When set, config-defined layers win over auto-detected ones.\n   * Example: { \"api\": [\"src/routes/**\", \"src/controllers/**\"] }\n   */\n  architectureLayers?: Record<string, string[]>;\n  /** Agent communication style injected at agentSpawn. Default: 'off'. */\n  cavemanMode: 'off' | 'lite' | 'full' | 'ultra';\n  /** Shell compression level for kirograph_exec. 'off' disables the hook/steering. Default: 'normal'. */\n  shellCompressionLevel: 'off' | 'normal' | 'aggressive' | 'ultra';\n  /**\n   * Number of pending (unindexed) files above which kirograph_status warns the agent.\n   * Set to 0 to disable the warning. Default: 10.\n   */\n  syncWarningThreshold: number;\n  /** Enable persistent cross-session memory. Default: false. */\n  enableMemory: boolean;\n  /** FTS/vector blend for memory search: 0 = FTS only, 1 = vector only. Default: 0.5. */\n  memorySearchAlpha: number;\n  /** Store uncompressed originals when caveman is on. Default: false. */\n  memoryKeepRaw: boolean;\n  /** Auto-prune threshold (max observations). 0 = no limit. Default: 10000. */\n  memoryMaxObservations: number;\n  /** Seconds of inactivity before auto-closing a session. Default: 7200. */\n  memorySessionTimeout: number;\n  /** Max observations shown in kirograph_context. Default: 3. */\n  memoryContextLimit: number;\n  /** Min relevance score to include memory in context. Default: 0.3. */\n  memoryContextThreshold: number;\n  /** Glob patterns for paths to never capture in memory. Default: []. */\n  memoryExcludePatterns: string[];\n}\n\n// \u2500\u2500 Constants \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nconst KIROGRAPH_DIR = '.kirograph';\nconst CONFIG_FILE = 'config.json';\n\nconst KNOWN_FIELDS = new Set<string>([\n  'version', 'languages', 'include', 'exclude', 'maxFileSize',\n  'extractDocstrings', 'trackCallSites', 'enableEmbeddings', 'embeddingModel', 'embeddingDim',\n  'useVecIndex', 'semanticEngine', 'typesenseDashboard', 'qdrantDashboard',\n  'minLogLevel', 'frameworkHints', 'fuzzyResolutionThreshold',\n  'enableArchitecture', 'architectureLayers', 'cavemanMode', 'shellCompressionLevel', 'syncWarningThreshold',\n  'enableMemory', 'memorySearchAlpha', 'memoryKeepRaw', 'memoryMaxObservations',\n  'memorySessionTimeout', 'memoryContextLimit', 'memoryContextThreshold', 'memoryExcludePatterns',\n  // Legacy aliases (still accepted, mapped during validation)\n  'enableCompression', 'compressionLevel',\n]);\n\nconst LOG_LEVELS = new Set(['debug', 'info', 'warn', 'error']);\n\n// \u2500\u2500 ReDoS-safe regex check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/**\n * Returns false if the pattern is potentially dangerous (ReDoS risk) or too long.\n * Checks for catastrophic backtracking patterns like (a+)+ or (a|a)+.\n */\nexport function isSafeRegex(pattern: string): boolean {\n  if (pattern.length > 100) return false;\n  // Detect nested quantifiers: (x+)+ or (x*)+ or (x+)* etc.\n  if (/\\([^)]*[+*][^)]*\\)[+*?]/.test(pattern)) return false;\n  // Detect alternation with overlap: (a|a)+ style\n  if (/\\([^)]*\\|[^)]*\\)[+*]/.test(pattern)) return false;\n  return true;\n}\n\n// \u2500\u2500 Default config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function createDefaultConfig(_projectRoot?: string): KiroGraphConfig {\n  return {\n    version: 2,\n    languages: [],\n    include: [],\n    exclude: ['**/node_modules/**', '**/dist/**', '**/build/**', '**/.git/**', '*.min.js', '**/.kirograph/**'],\n    maxFileSize: 1_048_576,\n    extractDocstrings: true,\n    trackCallSites: true,\n    enableEmbeddings: false,\n    embeddingModel: 'nomic-ai/nomic-embed-text-v1.5',\n    embeddingDim: 768,\n    useVecIndex: false,\n    semanticEngine: 'cosine',\n    typesenseDashboard: false,\n    qdrantDashboard: false,\n    minLogLevel: 'warn',\n    frameworkHints: [],\n    fuzzyResolutionThreshold: 0.5,\n    enableArchitecture: false,\n    cavemanMode: 'off',\n    shellCompressionLevel: 'normal',\n    syncWarningThreshold: 10,\n    enableMemory: false,\n    memorySearchAlpha: 0.5,\n    memoryKeepRaw: false,\n    memoryMaxObservations: 10000,\n    memorySessionTimeout: 7200,\n    memoryContextLimit: 3,\n    memoryContextThreshold: 0.3,\n    memoryExcludePatterns: [],\n  };\n}\n\n// \u2500\u2500 Validation \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function validateConfig(config: unknown): KiroGraphConfig {\n  const defaults = createDefaultConfig();\n\n  if (typeof config !== 'object' || config === null) {\n    return defaults;\n  }\n\n  const raw = config as Record<string, unknown>;\n\n  // Warn about unknown fields\n  for (const key of Object.keys(raw)) {\n    if (!KNOWN_FIELDS.has(key)) {\n      logWarn(`Unknown config field: ${key}`);\n    }\n  }\n\n  // Validate and coerce each field\n  const version = typeof raw.version === 'number' ? raw.version : defaults.version;\n  const languages = Array.isArray(raw.languages) && raw.languages.every(l => typeof l === 'string')\n    ? (raw.languages as string[])\n    : defaults.languages;\n  const maxFileSize = typeof raw.maxFileSize === 'number' && raw.maxFileSize > 0\n    ? raw.maxFileSize\n    : defaults.maxFileSize;\n  const extractDocstrings = typeof raw.extractDocstrings === 'boolean'\n    ? raw.extractDocstrings\n    : defaults.extractDocstrings;\n  const trackCallSites = typeof raw.trackCallSites === 'boolean'\n    ? raw.trackCallSites\n    : defaults.trackCallSites;\n  const enableEmbeddings = typeof raw.enableEmbeddings === 'boolean'\n    ? raw.enableEmbeddings\n    : defaults.enableEmbeddings;\n  const embeddingModel = typeof raw.embeddingModel === 'string' && raw.embeddingModel.length > 0\n    ? raw.embeddingModel\n    : defaults.embeddingModel;\n  const embeddingDim = typeof raw.embeddingDim === 'number' && raw.embeddingDim > 0\n    ? raw.embeddingDim\n    : defaults.embeddingDim;\n  const useVecIndex = typeof raw.useVecIndex === 'boolean'\n    ? raw.useVecIndex\n    : defaults.useVecIndex;\n  const SEMANTIC_ENGINES = new Set(['cosine', 'sqlite-vec', 'orama', 'pglite', 'lancedb', 'qdrant', 'typesense']);\n  // useVecIndex is a legacy alias: if set and no explicit semanticEngine, map it\n  const semanticEngine = typeof raw.semanticEngine === 'string' && SEMANTIC_ENGINES.has(raw.semanticEngine)\n    ? (raw.semanticEngine as KiroGraphConfig['semanticEngine'])\n    : useVecIndex ? 'sqlite-vec' : defaults.semanticEngine;\n  const typesenseDashboard = typeof raw.typesenseDashboard === 'boolean'\n    ? raw.typesenseDashboard\n    : defaults.typesenseDashboard;\n  const qdrantDashboard = typeof raw.qdrantDashboard === 'boolean'\n    ? raw.qdrantDashboard\n    : defaults.qdrantDashboard;\n  const minLogLevel = typeof raw.minLogLevel === 'string' && LOG_LEVELS.has(raw.minLogLevel)\n    ? (raw.minLogLevel as KiroGraphConfig['minLogLevel'])\n    : defaults.minLogLevel;\n  const frameworkHints = Array.isArray(raw.frameworkHints) && raw.frameworkHints.every(h => typeof h === 'string')\n    ? (raw.frameworkHints as string[])\n    : defaults.frameworkHints;\n  const fuzzyResolutionThreshold = typeof raw.fuzzyResolutionThreshold === 'number'\n    && raw.fuzzyResolutionThreshold >= 0\n    && raw.fuzzyResolutionThreshold <= 1\n    ? raw.fuzzyResolutionThreshold\n    : defaults.fuzzyResolutionThreshold;\n  const enableArchitecture = typeof raw.enableArchitecture === 'boolean'\n    ? raw.enableArchitecture\n    : defaults.enableArchitecture;\n  const architectureLayers = _validateArchitectureLayers(raw.architectureLayers);\n  const CAVEMAN_MODES = new Set(['off', 'lite', 'full', 'ultra']);\n  const cavemanMode = typeof raw.cavemanMode === 'string' && CAVEMAN_MODES.has(raw.cavemanMode)\n    ? (raw.cavemanMode as KiroGraphConfig['cavemanMode'])\n    : defaults.cavemanMode;\n  const COMPRESSION_LEVELS = new Set(['off', 'normal', 'aggressive', 'ultra']);\n  // Support legacy field names: enableCompression (boolean) and compressionLevel (string)\n  let shellCompressionLevel: KiroGraphConfig['shellCompressionLevel'];\n  if (typeof raw.shellCompressionLevel === 'string' && COMPRESSION_LEVELS.has(raw.shellCompressionLevel)) {\n    shellCompressionLevel = raw.shellCompressionLevel as KiroGraphConfig['shellCompressionLevel'];\n  } else if (typeof raw.compressionLevel === 'string' && COMPRESSION_LEVELS.has(raw.compressionLevel)) {\n    shellCompressionLevel = raw.compressionLevel as KiroGraphConfig['shellCompressionLevel'];\n  } else if (typeof raw.enableCompression === 'boolean') {\n    shellCompressionLevel = raw.enableCompression ? 'normal' : 'off';\n  } else {\n    shellCompressionLevel = defaults.shellCompressionLevel;\n  }\n  const syncWarningThreshold = typeof raw.syncWarningThreshold === 'number' && raw.syncWarningThreshold >= 0\n    ? Math.round(raw.syncWarningThreshold)\n    : defaults.syncWarningThreshold;\n\n  // \u2500\u2500 Memory config \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n  const enableMemory = typeof raw.enableMemory === 'boolean'\n    ? raw.enableMemory\n    : defaults.enableMemory;\n  const memorySearchAlpha = typeof raw.memorySearchAlpha === 'number'\n    && raw.memorySearchAlpha >= 0 && raw.memorySearchAlpha <= 1\n    ? raw.memorySearchAlpha\n    : defaults.memorySearchAlpha;\n  const memoryKeepRaw = typeof raw.memoryKeepRaw === 'boolean'\n    ? raw.memoryKeepRaw\n    : defaults.memoryKeepRaw;\n  const memoryMaxObservations = typeof raw.memoryMaxObservations === 'number' && raw.memoryMaxObservations >= 0\n    ? Math.round(raw.memoryMaxObservations)\n    : defaults.memoryMaxObservations;\n  const memorySessionTimeout = typeof raw.memorySessionTimeout === 'number' && raw.memorySessionTimeout > 0\n    ? Math.round(raw.memorySessionTimeout)\n    : defaults.memorySessionTimeout;\n  const memoryContextLimit = typeof raw.memoryContextLimit === 'number' && raw.memoryContextLimit >= 0\n    ? Math.round(raw.memoryContextLimit)\n    : defaults.memoryContextLimit;\n  const memoryContextThreshold = typeof raw.memoryContextThreshold === 'number'\n    && raw.memoryContextThreshold >= 0 && raw.memoryContextThreshold <= 1\n    ? raw.memoryContextThreshold\n    : defaults.memoryContextThreshold;\n  const memoryExcludePatterns = Array.isArray(raw.memoryExcludePatterns)\n    && raw.memoryExcludePatterns.every((p: unknown) => typeof p === 'string')\n    ? (raw.memoryExcludePatterns as string[])\n    : defaults.memoryExcludePatterns;\n\n  // Validate glob patterns \u2014 exclude unsafe regex patterns\n  const include = _validatePatterns(raw.include, defaults.include);\n  const exclude = _validatePatterns(raw.exclude, defaults.exclude);\n\n  return {\n    version,\n    languages,\n    include,\n    exclude,\n    maxFileSize,\n    extractDocstrings,\n    trackCallSites,\n    enableEmbeddings,\n    embeddingModel,\n    embeddingDim,\n    useVecIndex,\n    semanticEngine,\n    typesenseDashboard,\n    qdrantDashboard,\n    minLogLevel,\n    frameworkHints,\n    fuzzyResolutionThreshold,\n    enableArchitecture,\n    cavemanMode,\n    shellCompressionLevel,\n    syncWarningThreshold,\n    enableMemory,\n    memorySearchAlpha,\n    memoryKeepRaw,\n    memoryMaxObservations,\n    memorySessionTimeout,\n    memoryContextLimit,\n    memoryContextThreshold,\n    memoryExcludePatterns,\n    ...(architectureLayers !== undefined ? { architectureLayers } : {}),\n  };\n}\n\nfunction _validateArchitectureLayers(raw: unknown): Record<string, string[]> | undefined {\n  if (raw === undefined || raw === null) return undefined;\n  if (typeof raw !== 'object' || Array.isArray(raw)) return undefined;\n  const result: Record<string, string[]> = {};\n  for (const [key, val] of Object.entries(raw as Record<string, unknown>)) {\n    if (typeof key !== 'string') continue;\n    if (!Array.isArray(val)) continue;\n    const patterns = val.filter((p): p is string => typeof p === 'string' && isSafeRegex(p));\n    if (patterns.length > 0) result[key] = patterns;\n  }\n  return Object.keys(result).length > 0 ? result : undefined;\n}\n\nfunction _validatePatterns(raw: unknown, fallback: string[]): string[] {\n  if (!Array.isArray(raw)) return fallback;\n  const valid: string[] = [];\n  for (const p of raw) {\n    if (typeof p !== 'string') continue;\n    if (!isSafeRegex(p)) {\n      logWarn(`Unsafe regex pattern skipped: ${p}`);\n      continue;\n    }\n    valid.push(p);\n  }\n  return valid;\n}\n\n// \u2500\u2500 Migration helpers \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/**\n * Upgrades shallow exclude patterns (e.g. \"node_modules/**\") to recursive ones\n * (e.g. \"** /node_modules/**\") so nested directories are excluded at any depth.\n */\nconst SHALLOW_TO_RECURSIVE: Record<string, string> = {\n  'node_modules/**': '**/node_modules/**',\n  'dist/**': '**/dist/**',\n  'build/**': '**/build/**',\n  '.git/**': '**/.git/**',\n  '.kirograph/**': '**/.kirograph/**',\n};\n\nfunction migrateExcludePatterns(patterns: string[]): string[] {\n  return patterns.map(p => SHALLOW_TO_RECURSIVE[p] ?? p);\n}\n\n// \u2500\u2500 Load / Save \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport async function loadConfig(projectRoot: string): Promise<KiroGraphConfig> {\n  const dir = path.join(projectRoot, KIROGRAPH_DIR);\n  const cfgPath = path.join(dir, CONFIG_FILE);\n\n  if (!fs.existsSync(cfgPath)) {\n    // Create default config file\n    const defaults = createDefaultConfig(projectRoot);\n    await fs.promises.mkdir(dir, { recursive: true });\n    await _writeAtomic(cfgPath, defaults);\n    return defaults;\n  }\n\n  let raw: unknown;\n  try {\n    const text = await fs.promises.readFile(cfgPath, 'utf8');\n    raw = JSON.parse(text);\n  } catch (err) {\n    logError('Config parse error', { path: cfgPath, error: err instanceof Error ? err.message : String(err) });\n    return createDefaultConfig(projectRoot);\n  }\n\n  const config = validateConfig(raw);\n\n  // Migrate v1 \u2192 v2: upgrade shallow exclude patterns to recursive\n  if (config.version < 2) {\n    config.version = 2;\n    config.exclude = migrateExcludePatterns(config.exclude);\n    await fs.promises.mkdir(dir, { recursive: true });\n    await _writeAtomic(cfgPath, config);\n  }\n\n  return config;\n}\n\nexport async function saveConfig(projectRoot: string, config: KiroGraphConfig): Promise<void> {\n  const dir = path.join(projectRoot, KIROGRAPH_DIR);\n  const cfgPath = path.join(dir, CONFIG_FILE);\n  await fs.promises.mkdir(dir, { recursive: true });\n  await _writeAtomic(cfgPath, config);\n}\n\nasync function _writeAtomic(cfgPath: string, config: KiroGraphConfig): Promise<void> {\n  const tmp = cfgPath + '.tmp';\n  await fs.promises.writeFile(tmp, JSON.stringify(config, null, 2), 'utf8');\n  await fs.promises.rename(tmp, cfgPath);\n}\n\n// \u2500\u2500 Update helpers \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport async function updateConfig(\n  projectRoot: string,\n  patch: Partial<KiroGraphConfig>\n): Promise<KiroGraphConfig> {\n  const current = await loadConfig(projectRoot);\n  const updated = validateConfig({ ...current, ...patch });\n  await saveConfig(projectRoot, updated);\n  return updated;\n}\n\nexport async function addIncludePatterns(projectRoot: string, patterns: string[]): Promise<void> {\n  const config = await loadConfig(projectRoot);\n  const existing = new Set(config.include);\n  const toAdd = patterns.filter(p => isSafeRegex(p) && !existing.has(p));\n  if (toAdd.length === 0) return;\n  await saveConfig(projectRoot, { ...config, include: [...config.include, ...toAdd] });\n}\n\nexport async function addExcludePatterns(projectRoot: string, patterns: string[]): Promise<void> {\n  const config = await loadConfig(projectRoot);\n  const existing = new Set(config.exclude);\n  const toAdd = patterns.filter(p => isSafeRegex(p) && !existing.has(p));\n  if (toAdd.length === 0) return;\n  await saveConfig(projectRoot, { ...config, exclude: [...config.exclude, ...toAdd] });\n}\n\n// \u2500\u2500 File inclusion check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function shouldIncludeFile(config: KiroGraphConfig, relPath: string): boolean {\n  // Check exclude patterns first\n  for (const pattern of config.exclude) {\n    if (picomatch(pattern)(relPath)) return false;\n  }\n  // If include patterns are specified, file must match at least one\n  if (config.include.length > 0) {\n    return config.include.some(pattern => picomatch(pattern)(relPath));\n  }\n  return true;\n}\n"],
+  "mappings": 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   "names": ["picomatch"]
 }

package/dist/db/database.js

@@ -67,6 +67,23 @@ Or delete the lock manually: ${lockPath}`
     this.db.exec(sql);
     this.runMigrations();
   }
+  /**
+   * Apply memory schema tables. Called when enableMemory is true.
+   * Safe to call multiple times (CREATE IF NOT EXISTS).
+   */
+  applyMemorySchema() {
+    const schemaPath = path.join(__dirname, "../db/memory-schema.sql");
+    if (fs.existsSync(schemaPath)) {
+      const sql = fs.readFileSync(schemaPath, "utf8");
+      this.db.exec(sql);
+    }
+  }
+  /**
+   * Get the raw database handle (for MemoryDatabase).
+   */
+  getRawDb() {
+    return this.db;
+  }
   runMigrations() {
     const versionRow = this.db.get("SELECT version FROM schema_versions ORDER BY version DESC LIMIT 1");
     const currentVersion = versionRow ? versionRow.version : 0;

package/dist/db/database.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/db/database.ts"],
-  "sourcesContent": ["/**\n * KiroGraph Database Layer\n * Wraps node-sqlite3-wasm for portability (no native bindings needed).\n */\n\nimport * as path from 'path';\nimport * as fs from 'fs';\nimport type { Node, Edge, FileRecord, NodeKind, Language, GraphStats, NodeContext, NodeMetrics, SearchOptions } from '../types';\nimport type { ArchPackage, ArchLayer, ArchPackageDep, ArchLayerDep, ArchCoupling } from '../architecture/types';\n\n// eslint-disable-next-line @typescript-eslint/no-require-imports\nconst { Database } = require('node-sqlite3-wasm');\n\nconst CURRENT_SCHEMA_VERSION = 1;\n\nexport class GraphDatabase {\n  private db: any;\n  private projectRoot: string;\n\n  constructor(projectRoot: string) {\n    this.projectRoot = projectRoot;\n    const dbDir = path.join(projectRoot, '.kirograph');\n    fs.mkdirSync(dbDir, { recursive: true });\n    const dbPath = path.join(dbDir, 'kirograph.db');\n\n    // \u2500\u2500 Pre-flight lock check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n    // node-sqlite3-wasm calls process.abort() when the DB is locked, producing\n    // a cryptic \"Aborted()\" with no context. Detect the lock file early and\n    // throw a clean error instead so the global handler can surface it clearly.\n    const lockPath = path.join(dbDir, 'kirograph.db.lock');\n    if (fs.existsSync(lockPath)) {\n      throw new Error(\n        `Database is locked by another process (${lockPath} exists).\\n` +\n        `Run: kirograph unlock\\n` +\n        `Or delete the lock manually: ${lockPath}`\n      );\n    }\n\n    this.db = new Database(dbPath);\n    this.db.exec(`\n      PRAGMA journal_mode=WAL;\n      PRAGMA foreign_keys=ON;\n      PRAGMA busy_timeout=120000;\n      PRAGMA synchronous=NORMAL;\n      PRAGMA cache_size=-64000;\n      PRAGMA temp_store=MEMORY;\n      PRAGMA mmap_size=268435456;\n    `);\n    this.applySchema();\n  }\n\n  private applySchema(): void {\n    const schemaPath = path.join(__dirname, '../db/schema.sql');\n    const sql = fs.readFileSync(schemaPath, 'utf8');\n    this.db.exec(sql);\n    this.runMigrations();\n  }\n\n  private runMigrations(): void {\n    // Record initial schema version if not present\n    const versionRow = this.db.get('SELECT version FROM schema_versions ORDER BY version DESC LIMIT 1');\n    const currentVersion = versionRow ? versionRow.version : 0;\n\n    if (currentVersion < CURRENT_SCHEMA_VERSION) {\n      // Migration 1: schema.sql now includes all columns \u2014 nothing extra needed.\n      // The schema CREATE IF NOT EXISTS statements handle initial setup.\n      this.db.run('INSERT OR IGNORE INTO schema_versions (version, applied_at) VALUES (?, ?)',\n        [CURRENT_SCHEMA_VERSION, Date.now()]);\n    }\n\n    // Add attempted_strategies column to unresolved_refs if not present.\n    // SQLite throws if the column already exists, so we catch that error.\n    try {\n      this.db.run('ALTER TABLE unresolved_refs ADD COLUMN attempted_strategies TEXT');\n    } catch {\n      // Column already exists \u2014 nothing to do.\n    }\n  }\n\n  // \u2500\u2500 Files \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  upsertFile(record: FileRecord): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO files (path, content_hash, language, file_size, symbol_count, indexed_at)\n       VALUES (?, ?, ?, ?, ?, ?)`,\n      [record.path, record.contentHash, record.language, record.fileSize, record.symbolCount, record.indexedAt]\n    );\n  }\n\n  getFile(filePath: string): FileRecord | null {\n    const row = this.db.get('SELECT * FROM files WHERE path = ?', [filePath]);\n    return row ? this.rowToFile(row) : null;\n  }\n\n  getAllFiles(): FileRecord[] {\n    return this.db.all('SELECT * FROM files').map(this.rowToFile);\n  }\n\n  deleteFile(filePath: string): void {\n    // Cascade deletes nodes (and their edges via FK)\n    this.db.run('DELETE FROM nodes WHERE file_path = ?', [filePath]);\n    this.db.run('DELETE FROM files WHERE path = ?', [filePath]);\n  }\n\n  private rowToFile(row: any): FileRecord {\n    return {\n      path: row.path,\n      contentHash: row.content_hash,\n      language: row.language as Language,\n      fileSize: row.file_size,\n      symbolCount: row.symbol_count,\n      indexedAt: row.indexed_at,\n    };\n  }\n\n  // \u2500\u2500 Nodes \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  upsertNode(node: Node): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO nodes\n        (id, kind, name, qualified_name, file_path, language,\n         start_line, end_line, start_column, end_column,\n         docstring, signature, visibility,\n         is_exported, is_async, is_static, is_abstract,\n         decorators, type_parameters, updated_at)\n       VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?)`,\n      [\n        node.id, node.kind, node.name, node.qualifiedName, node.filePath, node.language,\n        node.startLine, node.endLine, node.startColumn, node.endColumn,\n        node.docstring ?? null, node.signature ?? null, node.visibility ?? null,\n        node.isExported ? 1 : 0, node.isAsync ? 1 : 0,\n        node.isStatic ? 1 : 0, node.isAbstract ? 1 : 0,\n        node.decorators ? JSON.stringify(node.decorators) : null,\n        node.typeParameters ? JSON.stringify(node.typeParameters) : null,\n        node.updatedAt,\n      ]\n    );\n    // Keep FTS in sync\n    this.db.run(\n      `INSERT OR REPLACE INTO nodes_fts (id, name, qualified_name, docstring, signature)\n       VALUES (?, ?, ?, ?, ?)`,\n      [node.id, node.name, node.qualifiedName, node.docstring ?? '', node.signature ?? '']\n    );\n  }\n\n  getNode(id: string): Node | null {\n    const row = this.db.get('SELECT * FROM nodes WHERE id = ?', [id]);\n    return row ? this.rowToNode(row) : null;\n  }\n\n  getNodesByFile(filePath: string): Node[] {\n    return this.db.all('SELECT * FROM nodes WHERE file_path = ?', [filePath]).map(this.rowToNode);\n  }\n\n  getNodesByKind(kind: Node['kind']): Node[] {\n    return this.db.all('SELECT * FROM nodes WHERE kind = ?', [kind]).map(this.rowToNode);\n  }\n\n  findNodesByExactName(name: string, kinds?: NodeKind[], limit = 20): Node[] {\n    if (kinds && kinds.length > 0) {\n      const placeholders = kinds.map(() => '?').join(',');\n      return this.db.all(\n        `SELECT * FROM nodes WHERE name = ? AND kind IN (${placeholders}) LIMIT ?`,\n        [name, ...kinds, limit]\n      ).map(this.rowToNode);\n    }\n    return this.db.all(\n      'SELECT * FROM nodes WHERE name = ? LIMIT ?',\n      [name, limit]\n    ).map(this.rowToNode);\n  }\n\n  searchNodes(query: string, opts: SearchOptions = {}): Node[] {\n    const { kinds, languages, limit = 20 } = opts;\n    // Sanitize for FTS5: strip special chars and append wildcard.\n    // Both the MATCH value and LIMIT are inlined (not bound via ?) because\n    // node-sqlite3-wasm passes bound parameters through to FTS5's own query\n    // parser before SQLite substitutes them, causing \"syntax error near ?\".\n    const safe = query\n      .replace(/\\b(AND|OR|NOT)\\b/g, ' ')       // FTS5 boolean operators\n      .replace(/['\"*()?\\-+^~:{}\\\\\\.\\/,]/g, ' ')  // FTS5 special chars (incl. / and ,)\n      .replace(/\\s+/g, ' ')\n      .trim();\n    if (!safe) return [];\n\n    const ftsQuery = safe + '*';\n    const safeLimit = Math.max(1, Math.floor(Number(limit)));\n\n    const conditions: string[] = [];\n    const params: any[] = [];\n\n    if (kinds && kinds.length > 0) {\n      conditions.push(`kind IN (${kinds.map(() => '?').join(',')})`);\n      params.push(...kinds);\n    }\n    if (languages && languages.length > 0) {\n      conditions.push(`language IN (${languages.map(() => '?').join(',')})`);\n      params.push(...languages);\n    }\n\n    const where = conditions.length > 0 ? `AND ${conditions.join(' AND ')}` : '';\n\n    return this.db.all(\n      `SELECT * FROM nodes\n       WHERE id IN (SELECT rowid FROM nodes_fts WHERE nodes_fts MATCH '${ftsQuery}')\n       ${where}\n       LIMIT ${safeLimit}`,\n      params\n    ).map(this.rowToNode);\n  }\n\n  searchNodesByName(name: string, opts: SearchOptions = {}): Node[] {\n    const { kinds, languages, limit = 20 } = opts;\n    const pattern = `%${name}%`;\n    const conditions: string[] = ['name LIKE ?'];\n    const params: any[] = [pattern];\n\n    if (kinds && kinds.length > 0) {\n      conditions.push(`kind IN (${kinds.map(() => '?').join(',')})`);\n      params.push(...kinds);\n    }\n    if (languages && languages.length > 0) {\n      conditions.push(`language IN (${languages.map(() => '?').join(',')})`);\n      params.push(...languages);\n    }\n    params.push(limit);\n\n    return this.db.all(\n      `SELECT * FROM nodes WHERE ${conditions.join(' AND ')} LIMIT ?`,\n      params\n    ).map(this.rowToNode);\n  }\n\n  deleteNodesByFile(filePath: string): void {\n    const ids = this.db.all('SELECT id FROM nodes WHERE file_path = ?', [filePath]).map((r: any) => r.id);\n    if (ids.length === 0) return;\n    const placeholders = ids.map(() => '?').join(',');\n    this.db.run(`DELETE FROM edges WHERE source IN (${placeholders}) OR target IN (${placeholders})`, [...ids, ...ids]);\n    this.db.run(`DELETE FROM nodes_fts WHERE id IN (${placeholders})`, ids);\n    this.db.run(`DELETE FROM nodes WHERE file_path = ?`, [filePath]);\n  }\n\n  private rowToNode(row: any): Node {\n    return {\n      id: row.id,\n      kind: row.kind as NodeKind,\n      name: row.name,\n      qualifiedName: row.qualified_name,\n      filePath: row.file_path,\n      language: row.language as Language,\n      startLine: row.start_line,\n      endLine: row.end_line,\n      startColumn: row.start_column,\n      endColumn: row.end_column,\n      docstring: row.docstring ?? undefined,\n      signature: row.signature ?? undefined,\n      visibility: row.visibility ?? undefined,\n      isExported: row.is_exported === 1,\n      isAsync: row.is_async === 1,\n      isStatic: row.is_static === 1,\n      isAbstract: row.is_abstract === 1,\n      decorators: row.decorators ? JSON.parse(row.decorators) : undefined,\n      typeParameters: row.type_parameters ? JSON.parse(row.type_parameters) : undefined,\n      updatedAt: row.updated_at,\n    };\n  }\n\n  // \u2500\u2500 Edges \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  insertEdge(edge: Edge): void {\n    this.db.run(\n      `INSERT OR IGNORE INTO edges (source, target, kind, metadata, line, column)\n       VALUES (?, ?, ?, ?, ?, ?)`,\n      [edge.source, edge.target, edge.kind, edge.metadata ? JSON.stringify(edge.metadata) : null, edge.line ?? null, edge.column ?? null]\n    );\n  }\n\n  getCallers(nodeId: string, limit = 30): Node[] {\n    return this.db.all(\n      `SELECT n.* FROM nodes n\n       JOIN edges e ON e.source = n.id\n       WHERE e.target = ? AND e.kind = 'calls'\n       LIMIT ?`,\n      [nodeId, limit]\n    ).map(this.rowToNode);\n  }\n\n  getCallees(nodeId: string, limit = 30): Node[] {\n    return this.db.all(\n      `SELECT n.* FROM nodes n\n       JOIN edges e ON e.target = n.id\n       WHERE e.source = ? AND e.kind = 'calls'\n       LIMIT ?`,\n      [nodeId, limit]\n    ).map(this.rowToNode);\n  }\n\n  getImpactRadius(nodeId: string, depth = 2): Node[] {\n    // BFS over 'calls' and 'imports' edges (dependents)\n    const visited = new Set<string>([nodeId]);\n    let frontier = [nodeId];\n    for (let d = 0; d < depth; d++) {\n      if (frontier.length === 0) break;\n      const placeholders = frontier.map(() => '?').join(',');\n      const rows = this.db.all(\n        `SELECT DISTINCT source FROM edges WHERE target IN (${placeholders}) AND kind IN ('calls','imports')`,\n        frontier\n      );\n      frontier = [];\n      for (const row of rows) {\n        if (!visited.has(row.source)) {\n          visited.add(row.source);\n          frontier.push(row.source);\n        }\n      }\n    }\n    visited.delete(nodeId);\n    if (visited.size === 0) return [];\n    const ids = [...visited];\n    const placeholders = ids.map(() => '?').join(',');\n    return this.db.all(`SELECT * FROM nodes WHERE id IN (${placeholders})`, ids).map(this.rowToNode);\n  }\n\n  getEdgesForNodes(nodeIds: string[]): Edge[] {\n    if (nodeIds.length === 0) return [];\n    const placeholders = nodeIds.map(() => '?').join(',');\n    return this.db.all(\n      `SELECT * FROM edges WHERE source IN (${placeholders}) OR target IN (${placeholders})`,\n      [...nodeIds, ...nodeIds]\n    ).map((row: any) => ({\n      source: row.source,\n      target: row.target,\n      kind: row.kind,\n      metadata: row.metadata ? JSON.parse(row.metadata) : undefined,\n      line: row.line ?? undefined,\n      column: row.column ?? undefined,\n    }));\n  }\n\n  /**\n   * Find files that import (depend on) the given file path.\n   * Used for affected-test traversal.\n   */\n  getDependentFiles(filePath: string): string[] {\n    // Find nodes in the target file\n    const targetNodes = this.db.all('SELECT id FROM nodes WHERE file_path = ?', [filePath]);\n    if (targetNodes.length === 0) return [];\n    const ids = targetNodes.map((r: any) => r.id);\n    const placeholders = ids.map(() => '?').join(',');\n    // Find source nodes that call/import these target nodes\n    const rows = this.db.all(\n      `SELECT DISTINCT n.file_path FROM nodes n\n       JOIN edges e ON e.source = n.id\n       WHERE e.target IN (${placeholders}) AND e.kind IN ('calls','imports')\n       AND n.file_path != ?`,\n      [...ids, filePath]\n    );\n    return rows.map((r: any) => r.file_path);\n  }\n\n  // \u2500\u2500 Unresolved References \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  insertUnresolvedRef(sourceId: string, refName: string, refKind: string, filePath: string, line?: number, column?: number): void {\n    this.db.run(\n      `INSERT INTO unresolved_refs (source_id, ref_name, ref_kind, file_path, line, column)\n       VALUES (?, ?, ?, ?, ?, ?)`,\n      [sourceId, refName, refKind, filePath, line ?? null, column ?? null]\n    );\n  }\n\n  deleteUnresolvedRefsByFile(filePath: string): void {\n    this.db.run('DELETE FROM unresolved_refs WHERE file_path = ?', [filePath]);\n  }\n\n  /**\n   * Resolve pending references:\n   * - refKind='function': 3-strategy name matching \u2192 'calls' edge\n   * - refKind='import': path-based resolution \u2192 'imports' edge\n   *\n   * Returns the number of edges successfully created.\n   */\n  resolveUnresolvedRefs(): number {\n    const refs = this.db.all('SELECT * FROM unresolved_refs');\n    let resolved = 0;\n\n    for (const ref of refs) {\n      const { id: refId, source_id: sourceId, ref_name: refName, ref_kind: refKind, file_path: filePath, line, column } = ref;\n\n      if (refKind === 'function') {\n        // Strategy 1: exact name match\n        let target = this.db.get('SELECT id FROM nodes WHERE name = ? LIMIT 1', [refName]);\n\n        // Strategy 2: qualified name suffix\n        if (!target) {\n          target = this.db.get(\n            `SELECT id FROM nodes WHERE qualified_name LIKE ? LIMIT 1`,\n            [`%::${refName}`]\n          );\n        }\n\n        // Strategy 3: case-insensitive\n        if (!target) {\n          target = this.db.get(\n            'SELECT id FROM nodes WHERE lower(name) = lower(?) LIMIT 1',\n            [refName]\n          );\n        }\n\n        if (target) {\n          this.insertEdge({ source: sourceId, target: target.id, kind: 'calls', line: line ?? undefined, column: column ?? undefined });\n          this.db.run('DELETE FROM unresolved_refs WHERE id = ?', [refId]);\n          resolved++;\n        }\n      } else if (refKind === 'import') {\n        // Resolve import path to an indexed file\n        const targetFileNode = this.resolveImportPath(refName, filePath);\n        if (targetFileNode) {\n          this.insertEdge({ source: sourceId, target: targetFileNode, kind: 'imports', line: line ?? undefined, column: column ?? undefined });\n          this.db.run('DELETE FROM unresolved_refs WHERE id = ?', [refId]);\n          resolved++;\n        }\n      }\n    }\n\n    return resolved;\n  }\n\n  /** @deprecated Use resolveUnresolvedRefs() */\n  resolveCallEdges(): number {\n    return this.resolveUnresolvedRefs();\n  }\n\n  /**\n   * Resolve a module import path to the ID of the first node in the target file.\n   * Returns null if no indexed file matches.\n   */\n  private resolveImportPath(importPath: string, sourceFilePath: string): string | null {\n    // Only resolve relative imports\n    if (!importPath.startsWith('.')) return null;\n\n    const sourceDir = sourceFilePath.replace(/[^/]+$/, '');\n    // Normalize the relative path\n    const segments = (sourceDir + importPath).split('/');\n    const normalized: string[] = [];\n    for (const seg of segments) {\n      if (seg === '..') normalized.pop();\n      else if (seg !== '.') normalized.push(seg);\n    }\n    const basePath = normalized.join('/');\n\n    // Try exact match, then with common extensions\n    const candidates = [\n      basePath,\n      basePath + '.ts',\n      basePath + '.tsx',\n      basePath + '.js',\n      basePath + '.jsx',\n      basePath + '/index.ts',\n      basePath + '/index.tsx',\n      basePath + '/index.js',\n    ];\n\n    for (const candidate of candidates) {\n      const row = this.db.get('SELECT id FROM nodes WHERE file_path = ? LIMIT 1', [candidate]);\n      if (row) return row.id;\n    }\n\n    return null;\n  }\n\n  // \u2500\u2500 Node Context & Metrics \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  getNodeContext(nodeId: string): NodeContext | null {\n    const node = this.getNode(nodeId);\n    if (!node) return null;\n\n    const ancestors = this.db.all(\n      `SELECT n.* FROM nodes n\n       JOIN edges e ON e.target = n.id\n       WHERE e.source = ? AND e.kind = 'contains'`,\n      [nodeId]\n    ).map(this.rowToNode);\n\n    const children = this.db.all(\n      `SELECT n.* FROM nodes n\n       JOIN edges e ON e.source = n.id\n       WHERE e.target = n.id AND e.source = ? AND e.kind = 'contains'`,\n      [nodeId]\n    ).map(this.rowToNode);\n\n    const callers = this.getCallers(nodeId, 20);\n    const callees = this.getCallees(nodeId, 20);\n\n    return { node, ancestors, children, callers, callees };\n  }\n\n  getNodeMetrics(nodeId: string): NodeMetrics {\n    const incomingEdgeCount = (this.db.get('SELECT COUNT(*) as c FROM edges WHERE target = ?', [nodeId])?.c ?? 0);\n    const outgoingEdgeCount = (this.db.get('SELECT COUNT(*) as c FROM edges WHERE source = ?', [nodeId])?.c ?? 0);\n    const callCount = (this.db.get(`SELECT COUNT(*) as c FROM edges WHERE source = ? AND kind = 'calls'`, [nodeId])?.c ?? 0);\n    const callerCount = (this.db.get(`SELECT COUNT(*) as c FROM edges WHERE target = ? AND kind = 'calls'`, [nodeId])?.c ?? 0);\n    const childCount = (this.db.get(`SELECT COUNT(*) as c FROM edges WHERE source = ? AND kind = 'contains'`, [nodeId])?.c ?? 0);\n    return { incomingEdgeCount, outgoingEdgeCount, callCount, callerCount, childCount };\n  }\n\n  // \u2500\u2500 Graph Analysis \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  /**\n   * Find symbols with no incoming edges (potential dead code).\n   * Excludes exported symbols since they may be consumed externally.\n   */\n  findDeadCode(limit = 50): Node[] {\n    return this.db.all(\n      `SELECT * FROM nodes\n       WHERE kind IN ('function','method','class')\n         AND is_exported = 0\n         AND id NOT IN (SELECT DISTINCT target FROM edges)\n       LIMIT ?`,\n      [limit]\n    ).map(this.rowToNode);\n  }\n\n  /**\n   * Find circular import dependencies using DFS over import edges.\n   * Returns arrays of file paths forming cycles.\n   */\n  findCircularDependencies(): string[][] {\n    // Build adjacency map: file \u2192 imported files\n    const rows = this.db.all(\n      `SELECT DISTINCT n1.file_path as src, n2.file_path as dst\n       FROM edges e\n       JOIN nodes n1 ON n1.id = e.source\n       JOIN nodes n2 ON n2.id = e.target\n       WHERE e.kind = 'imports' AND n1.file_path != n2.file_path`\n    );\n\n    const adj = new Map<string, Set<string>>();\n    for (const row of rows) {\n      if (!adj.has(row.src)) adj.set(row.src, new Set());\n      adj.get(row.src)!.add(row.dst);\n    }\n\n    const cycles: string[][] = [];\n    const visited = new Set<string>();\n    const pathSet = new Set<string>();\n    const pathArr: string[] = [];\n\n    function dfs(node: string): void {\n      if (pathSet.has(node)) {\n        const cycleStart = pathArr.indexOf(node);\n        cycles.push(pathArr.slice(cycleStart).concat(node));\n        return;\n      }\n      if (visited.has(node)) return;\n      visited.add(node);\n      pathSet.add(node);\n      pathArr.push(node);\n      for (const neighbor of adj.get(node) ?? []) {\n        dfs(neighbor);\n      }\n      pathArr.pop();\n      pathSet.delete(node);\n    }\n\n    for (const node of adj.keys()) {\n      if (!visited.has(node)) dfs(node);\n    }\n\n    return cycles;\n  }\n\n  /**\n   * Find the shortest path between two nodes via directed BFS (outgoing edges only).\n   */\n  findPath(fromId: string, toId: string, maxDepth = 10): Node[] {\n    if (fromId === toId) {\n      const node = this.getNode(fromId);\n      return node ? [node] : [];\n    }\n\n    const prev = new Map<string, string>();\n    const queue: string[] = [fromId];\n    const visited = new Set<string>([fromId]);\n    let depth = 0;\n\n    outer: while (queue.length > 0 && depth < maxDepth) {\n      const levelSize = queue.length;\n      depth++;\n      for (let i = 0; i < levelSize; i++) {\n        const current = queue.shift()!;\n        // Directed: only follow outgoing edges\n        const rows = this.db.all(\n          `SELECT DISTINCT target as next FROM edges WHERE source = ?`,\n          [current]\n        );\n        for (const row of rows) {\n          if (!visited.has(row.next)) {\n            visited.add(row.next);\n            prev.set(row.next, current);\n            if (row.next === toId) break outer;\n            queue.push(row.next);\n          }\n        }\n      }\n    }\n\n    if (!prev.has(toId)) return [];\n\n    // Reconstruct path\n    const pathIds: string[] = [];\n    let cur: string | undefined = toId;\n    while (cur !== undefined) {\n      pathIds.unshift(cur);\n      cur = prev.get(cur);\n    }\n\n    const result: Node[] = [];\n    for (const id of pathIds) {\n      const node = this.getNode(id);\n      if (node) result.push(node);\n    }\n    return result;\n  }\n\n  /**\n   * Traverse type hierarchy via 'extends' and 'implements' edges.\n   * direction 'up' = base types, 'down' = derived types, 'both' = all.\n   */\n  getTypeHierarchy(nodeId: string, direction: 'up' | 'down' | 'both' = 'both'): Node[] {\n    const visited = new Set<string>([nodeId]);\n    const frontier = [nodeId];\n    const result: Node[] = [];\n\n    while (frontier.length > 0) {\n      const current = frontier.shift()!;\n      let rows: any[] = [];\n\n      if (direction === 'up' || direction === 'both') {\n        // current extends/implements something \u2192 go up\n        const up = this.db.all(\n          `SELECT target as id FROM edges WHERE source = ? AND kind IN ('extends','implements')`,\n          [current]\n        );\n        rows = rows.concat(up);\n      }\n      if (direction === 'down' || direction === 'both') {\n        // something extends/implements current \u2192 go down\n        const down = this.db.all(\n          `SELECT source as id FROM edges WHERE target = ? AND kind IN ('extends','implements')`,\n          [current]\n        );\n        rows = rows.concat(down);\n      }\n\n      for (const row of rows) {\n        if (!visited.has(row.id)) {\n          visited.add(row.id);\n          frontier.push(row.id);\n          const node = this.getNode(row.id);\n          if (node) result.push(node);\n        }\n      }\n    }\n\n    return result;\n  }\n\n  // \u2500\u2500 Stats \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  getEmbeddingCount(): number {\n    try {\n      const row = this.db.get('SELECT COUNT(*) as c FROM vectors');\n      return row ? row.c : 0;\n    } catch {\n      return 0;\n    }\n  }\n\n  storeEmbedding(nodeId: string, embedding: Float32Array, model: string): void {\n    const buf = Buffer.from(embedding.buffer);\n    this.db.run(\n      `INSERT OR REPLACE INTO vectors (node_id, embedding, model, created_at) VALUES (?, ?, ?, ?)`,\n      [nodeId, buf, model, Date.now()]\n    );\n  }\n\n  getEmbeddedNodeIds(): string[] {\n    return this.db.all('SELECT node_id FROM vectors').map((r: any) => r.node_id);\n  }\n\n  getAllEmbeddings(): Array<{ nodeId: string; embedding: Float32Array }> {\n    const rows = this.db.all('SELECT node_id, embedding FROM vectors');\n    return rows.map((r: any) => ({\n      nodeId: r.node_id as string,\n      embedding: new Float32Array(\n        (r.embedding as Buffer).buffer,\n        (r.embedding as Buffer).byteOffset,\n        (r.embedding as Buffer).byteLength / 4\n      ),\n    }));\n  }\n\n  getAllNodes(): import('../types').Node[] {\n    return this.db.all('SELECT * FROM nodes').map(this.rowToNode);\n  }\n\n  /**\n   * Returns embeddable nodes in pages for memory-efficient streaming.\n   * `kinds` filters by node kind (e.g. ['function','method','class']).\n   * Returns an empty array when offset >= total count.\n   */\n  getEmbeddableNodesPaged(kinds: string[], limit: number, offset: number): import('../types').Node[] {\n    if (kinds.length === 0) return [];\n    const placeholders = kinds.map(() => '?').join(',');\n    return this.db.all(\n      `SELECT * FROM nodes WHERE kind IN (${placeholders}) LIMIT ? OFFSET ?`,\n      [...kinds, limit, offset]\n    ).map(this.rowToNode);\n  }\n\n  /** Count of nodes whose kind is in the provided list. */\n  countEmbeddableNodes(kinds: string[]): number {\n    if (kinds.length === 0) return 0;\n    const placeholders = kinds.map(() => '?').join(',');\n    const row = this.db.get(`SELECT COUNT(*) as c FROM nodes WHERE kind IN (${placeholders})`, kinds);\n    return row?.c ?? 0;\n  }\n\n  getAllEdges(): Edge[] {\n    return this.db.all('SELECT source, target, kind FROM edges').map((row: any) => ({\n      source: row.source,\n      target: row.target,\n      kind: row.kind,\n    }));\n  }\n\n  /**\n   * Find the top-N most-connected nodes by total edge degree (in + out).\n   * Excludes 'contains' edges (structural nesting, not semantic connections).\n   */\n  findHotspots(limit = 20): Array<Node & { degree: number; inDegree: number; outDegree: number }> {\n    const rows = this.db.all(\n      `SELECT n.*,\n         (SELECT COUNT(*) FROM edges WHERE target = n.id AND kind != 'contains') AS in_degree,\n         (SELECT COUNT(*) FROM edges WHERE source = n.id AND kind != 'contains') AS out_degree,\n         (SELECT COUNT(*) FROM edges WHERE (source = n.id OR target = n.id) AND kind != 'contains') AS degree\n       FROM nodes n\n       ORDER BY degree DESC\n       LIMIT ?`,\n      [limit]\n    );\n    return rows.map((row: any) => ({\n      ...this.rowToNode(row),\n      degree: row.degree as number,\n      inDegree: row.in_degree as number,\n      outDegree: row.out_degree as number,\n    }));\n  }\n\n  /**\n   * Find surprising cross-file connections: direct edges between nodes in\n   * structurally distant files. Scored by path distance \u00D7 edge-kind weight.\n   */\n  findSurprisingConnections(limit = 20): Array<{ source: Node; target: Node; kind: string; score: number }> {\n    const KIND_WEIGHT: Record<string, number> = {\n      calls: 1.0, references: 0.8, type_of: 0.7, returns: 0.6,\n      decorates: 0.6, extends: 0.5, implements: 0.5,\n    };\n\n    const rows: Array<{ source: string; target: string; kind: string; source_file: string; target_file: string }> =\n      this.db.all(\n        `SELECT e.source, e.target, e.kind,\n                ns.file_path AS source_file, nt.file_path AS target_file\n         FROM edges e\n         JOIN nodes ns ON ns.id = e.source\n         JOIN nodes nt ON nt.id = e.target\n         WHERE ns.file_path != nt.file_path\n           AND e.kind NOT IN ('contains', 'import', 'imports')\n         LIMIT 5000`\n      );\n\n    // Score: path distance \u00D7 kind weight\n    const scored = rows.map(row => {\n      const srcDirs = row.source_file.split('/').slice(0, -1);\n      const tgtDirs = row.target_file.split('/').slice(0, -1);\n      let common = 0;\n      for (let i = 0; i < Math.min(srcDirs.length, tgtDirs.length); i++) {\n        if (srcDirs[i] === tgtDirs[i]) common++;\n        else break;\n      }\n      const maxDirs = Math.max(srcDirs.length, tgtDirs.length, 1);\n      const pathSimilarity = common / maxDirs;\n      const kindWeight = KIND_WEIGHT[row.kind] ?? 0.4;\n      return { ...row, score: (1 - pathSimilarity) * kindWeight };\n    });\n\n    // Sort desc, deduplicate by source+target+kind\n    scored.sort((a, b) => b.score - a.score);\n    const seen = new Set<string>();\n    const top: typeof scored = [];\n    for (const row of scored) {\n      const key = `${row.source}|${row.target}|${row.kind}`;\n      if (!seen.has(key)) {\n        seen.add(key);\n        top.push(row);\n        if (top.length >= limit) break;\n      }\n    }\n\n    const result: Array<{ source: Node; target: Node; kind: string; score: number }> = [];\n    for (const row of top) {\n      const src = this.getNode(row.source);\n      const tgt = this.getNode(row.target);\n      if (src && tgt) result.push({ source: src, target: tgt, kind: row.kind, score: row.score });\n    }\n    return result;\n  }\n\n  getStats(): GraphStats {\n    const files = this.db.get('SELECT COUNT(*) as c FROM files').c;\n    const nodes = this.db.get('SELECT COUNT(*) as c FROM nodes').c;\n    const edges = this.db.get('SELECT COUNT(*) as c FROM edges').c;\n    const kindRows = this.db.all('SELECT kind, COUNT(*) as c FROM nodes GROUP BY kind');\n    const nodesByKind: Record<string, number> = {};\n    for (const row of kindRows) nodesByKind[row.kind] = row.c;\n    const langRows = this.db.all('SELECT language, COUNT(*) as c FROM files GROUP BY language');\n    const filesByLanguage: Record<string, number> = {};\n    for (const row of langRows) filesByLanguage[row.language] = row.c;\n    const dbPath = path.join(this.projectRoot, '.kirograph', 'kirograph.db');\n    let dbSizeBytes = 0;\n    try { dbSizeBytes = fs.statSync(dbPath).size; } catch { /* ignore */ }\n    const embeddingCount = this.getEmbeddingCount();\n    return { files, nodes, edges, nodesByKind, filesByLanguage, dbSizeBytes, embeddingCount, embeddingsEnabled: false, embeddingModel: '', useVecIndex: false, semanticEngine: 'cosine' as const, vecIndexCount: 0, engineFallback: null, embeddableNodeCount: 0, frameworks: [], architectureEnabled: false };\n  }\n\n  // \u2500\u2500 Architecture \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  clearArchitecture(): void {\n    this.db.run('DELETE FROM arch_coupling');\n    this.db.run('DELETE FROM arch_layer_deps');\n    this.db.run('DELETE FROM arch_package_deps');\n    this.db.run('DELETE FROM arch_file_layers');\n    this.db.run('DELETE FROM arch_file_packages');\n    this.db.run('DELETE FROM arch_layers');\n    this.db.run('DELETE FROM arch_packages');\n  }\n\n  upsertArchPackage(pkg: ArchPackage): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_packages\n        (id, name, path, source, language, manifest_path, version, external_deps, metadata, updated_at)\n       VALUES (?,?,?,?,?,?,?,?,?,?)`,\n      [\n        pkg.id, pkg.name, pkg.path, pkg.source,\n        pkg.language ?? null, pkg.manifestPath ?? null, pkg.version ?? null,\n        pkg.externalDeps ? JSON.stringify(pkg.externalDeps) : null,\n        pkg.metadata ? JSON.stringify(pkg.metadata) : null,\n        pkg.updatedAt,\n      ]\n    );\n  }\n\n  upsertArchLayer(layer: ArchLayer): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_layers (id, name, source, patterns, metadata, updated_at)\n       VALUES (?,?,?,?,?,?)`,\n      [\n        layer.id, layer.name, layer.source,\n        JSON.stringify(layer.patterns),\n        layer.metadata ? JSON.stringify(layer.metadata) : null,\n        layer.updatedAt,\n      ]\n    );\n  }\n\n  upsertArchFilePackage(filePath: string, packageId: string): void {\n    this.db.run(\n      'INSERT OR IGNORE INTO arch_file_packages (file_path, package_id) VALUES (?,?)',\n      [filePath, packageId]\n    );\n  }\n\n  upsertArchFileLayer(filePath: string, layerId: string, confidence: number, matchedPattern: string): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence, matched_pattern)\n       VALUES (?,?,?,?)`,\n      [filePath, layerId, confidence, matchedPattern]\n    );\n  }\n\n  upsertArchPackageDep(sourcePkg: string, targetPkg: string, depCount: number, files?: Array<{ from: string; to: string }>): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_package_deps (source_pkg, target_pkg, dep_count, files)\n       VALUES (?,?,?,?)`,\n      [sourcePkg, targetPkg, depCount, files ? JSON.stringify(files) : null]\n    );\n  }\n\n  upsertArchLayerDep(sourceLayer: string, targetLayer: string, depCount: number): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_layer_deps (source_layer, target_layer, dep_count)\n       VALUES (?,?,?)`,\n      [sourceLayer, targetLayer, depCount]\n    );\n  }\n\n  upsertArchCoupling(coupling: ArchCoupling): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_coupling (package_id, afferent, efferent, instability, updated_at)\n       VALUES (?,?,?,?,?)`,\n      [coupling.packageId, coupling.afferent, coupling.efferent, coupling.instability, coupling.updatedAt]\n    );\n  }\n\n  getArchPackages(): ArchPackage[] {\n    return this.db.all('SELECT * FROM arch_packages').map((r: any): ArchPackage => ({\n      id: r.id,\n      name: r.name,\n      path: r.path,\n      source: r.source,\n      language: r.language ?? undefined,\n      manifestPath: r.manifest_path ?? undefined,\n      version: r.version ?? undefined,\n      externalDeps: r.external_deps ? JSON.parse(r.external_deps) : undefined,\n      metadata: r.metadata ? JSON.parse(r.metadata) : undefined,\n      updatedAt: r.updated_at,\n    }));\n  }\n\n  getArchLayers(): ArchLayer[] {\n    return this.db.all('SELECT * FROM arch_layers').map((r: any): ArchLayer => ({\n      id: r.id,\n      name: r.name,\n      source: r.source,\n      patterns: JSON.parse(r.patterns),\n      metadata: r.metadata ? JSON.parse(r.metadata) : undefined,\n      updatedAt: r.updated_at,\n    }));\n  }\n\n  getArchPackageDeps(): ArchPackageDep[] {\n    return this.db.all('SELECT * FROM arch_package_deps').map((r: any): ArchPackageDep => ({\n      sourcePkg: r.source_pkg,\n      targetPkg: r.target_pkg,\n      depCount: r.dep_count,\n      files: r.files ? JSON.parse(r.files) : undefined,\n    }));\n  }\n\n  getArchLayerDeps(): ArchLayerDep[] {\n    return this.db.all('SELECT * FROM arch_layer_deps').map((r: any): ArchLayerDep => ({\n      sourceLayer: r.source_layer,\n      targetLayer: r.target_layer,\n      depCount: r.dep_count,\n    }));\n  }\n\n  getArchCoupling(): ArchCoupling[] {\n    return this.db.all('SELECT * FROM arch_coupling').map((r: any): ArchCoupling => ({\n      packageId: r.package_id,\n      afferent: r.afferent,\n      efferent: r.efferent,\n      instability: r.instability,\n      updatedAt: r.updated_at,\n    }));\n  }\n\n  getArchStats(): { packages: number; layers: number; packageDeps: number } {\n    return {\n      packages: this.db.get('SELECT COUNT(*) as c FROM arch_packages')?.c ?? 0,\n      layers: this.db.get('SELECT COUNT(*) as c FROM arch_layers')?.c ?? 0,\n      packageDeps: this.db.get('SELECT COUNT(*) as c FROM arch_package_deps')?.c ?? 0,\n    };\n  }\n\n  /**\n   * Return file-to-file import relationships by joining edges + nodes.\n   * Used by ArchitectureAnalyzer to roll up package-level dependencies.\n   */\n  getFileImportPairs(): Array<{ sourceFile: string; targetFile: string }> {\n    return this.db.all(\n      `SELECT DISTINCT n1.file_path as source_file, n2.file_path as target_file\n       FROM edges e\n       JOIN nodes n1 ON n1.id = e.source\n       JOIN nodes n2 ON n2.id = e.target\n       WHERE e.kind = 'imports' AND n1.file_path != n2.file_path`\n    ).map((r: any) => ({ sourceFile: r.source_file, targetFile: r.target_file }));\n  }\n\n  getArchFilePackages(): Array<{ filePath: string; packageId: string }> {\n    return this.db.all('SELECT file_path, package_id FROM arch_file_packages')\n      .map((r: any) => ({ filePath: r.file_path, packageId: r.package_id }));\n  }\n\n  getArchFileLayers(): Array<{ filePath: string; layerId: string; confidence: number; matchedPattern: string }> {\n    return this.db.all('SELECT file_path, layer_id, confidence, matched_pattern FROM arch_file_layers')\n      .map((r: any) => ({\n        filePath: r.file_path,\n        layerId: r.layer_id,\n        confidence: r.confidence,\n        matchedPattern: r.matched_pattern,\n      }));\n  }\n\n  getArchitectureResult(): {\n    packages: ArchPackage[];\n    layers: ArchLayer[];\n    packageDeps: ArchPackageDep[];\n    layerDeps: ArchLayerDep[];\n    coupling: ArchCoupling[];\n  } {\n    return {\n      packages: this.getArchPackages(),\n      layers: this.getArchLayers(),\n      packageDeps: this.getArchPackageDeps(),\n      layerDeps: this.getArchLayerDeps(),\n      coupling: this.getArchCoupling(),\n    };\n  }\n\n  // \u2500\u2500 Transactions \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  transaction<T>(fn: () => T): T {\n    this.db.run('BEGIN');\n    try {\n      const result = fn();\n      this.db.run('COMMIT');\n      return result;\n    } catch (err) {\n      this.db.run('ROLLBACK');\n      throw err;\n    }\n  }\n\n  close(): void {\n    this.db.close();\n  }\n}\n"],
-  "mappings": 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+  "sourcesContent": ["/**\n * KiroGraph Database Layer\n * Wraps node-sqlite3-wasm for portability (no native bindings needed).\n */\n\nimport * as path from 'path';\nimport * as fs from 'fs';\nimport type { Node, Edge, FileRecord, NodeKind, Language, GraphStats, NodeContext, NodeMetrics, SearchOptions } from '../types';\nimport type { ArchPackage, ArchLayer, ArchPackageDep, ArchLayerDep, ArchCoupling } from '../architecture/types';\n\n// eslint-disable-next-line @typescript-eslint/no-require-imports\nconst { Database } = require('node-sqlite3-wasm');\n\nconst CURRENT_SCHEMA_VERSION = 1;\n\nexport class GraphDatabase {\n  private db: any;\n  private projectRoot: string;\n\n  constructor(projectRoot: string) {\n    this.projectRoot = projectRoot;\n    const dbDir = path.join(projectRoot, '.kirograph');\n    fs.mkdirSync(dbDir, { recursive: true });\n    const dbPath = path.join(dbDir, 'kirograph.db');\n\n    // \u2500\u2500 Pre-flight lock check \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n    // node-sqlite3-wasm calls process.abort() when the DB is locked, producing\n    // a cryptic \"Aborted()\" with no context. Detect the lock file early and\n    // throw a clean error instead so the global handler can surface it clearly.\n    const lockPath = path.join(dbDir, 'kirograph.db.lock');\n    if (fs.existsSync(lockPath)) {\n      throw new Error(\n        `Database is locked by another process (${lockPath} exists).\\n` +\n        `Run: kirograph unlock\\n` +\n        `Or delete the lock manually: ${lockPath}`\n      );\n    }\n\n    this.db = new Database(dbPath);\n    this.db.exec(`\n      PRAGMA journal_mode=WAL;\n      PRAGMA foreign_keys=ON;\n      PRAGMA busy_timeout=120000;\n      PRAGMA synchronous=NORMAL;\n      PRAGMA cache_size=-64000;\n      PRAGMA temp_store=MEMORY;\n      PRAGMA mmap_size=268435456;\n    `);\n    this.applySchema();\n  }\n\n  private applySchema(): void {\n    const schemaPath = path.join(__dirname, '../db/schema.sql');\n    const sql = fs.readFileSync(schemaPath, 'utf8');\n    this.db.exec(sql);\n    this.runMigrations();\n  }\n\n  /**\n   * Apply memory schema tables. Called when enableMemory is true.\n   * Safe to call multiple times (CREATE IF NOT EXISTS).\n   */\n  applyMemorySchema(): void {\n    const schemaPath = path.join(__dirname, '../db/memory-schema.sql');\n    if (fs.existsSync(schemaPath)) {\n      const sql = fs.readFileSync(schemaPath, 'utf8');\n      this.db.exec(sql);\n    }\n  }\n\n  /**\n   * Get the raw database handle (for MemoryDatabase).\n   */\n  getRawDb(): any {\n    return this.db;\n  }\n\n  private runMigrations(): void {\n    // Record initial schema version if not present\n    const versionRow = this.db.get('SELECT version FROM schema_versions ORDER BY version DESC LIMIT 1');\n    const currentVersion = versionRow ? versionRow.version : 0;\n\n    if (currentVersion < CURRENT_SCHEMA_VERSION) {\n      // Migration 1: schema.sql now includes all columns \u2014 nothing extra needed.\n      // The schema CREATE IF NOT EXISTS statements handle initial setup.\n      this.db.run('INSERT OR IGNORE INTO schema_versions (version, applied_at) VALUES (?, ?)',\n        [CURRENT_SCHEMA_VERSION, Date.now()]);\n    }\n\n    // Add attempted_strategies column to unresolved_refs if not present.\n    // SQLite throws if the column already exists, so we catch that error.\n    try {\n      this.db.run('ALTER TABLE unresolved_refs ADD COLUMN attempted_strategies TEXT');\n    } catch {\n      // Column already exists \u2014 nothing to do.\n    }\n  }\n\n  // \u2500\u2500 Files \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  upsertFile(record: FileRecord): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO files (path, content_hash, language, file_size, symbol_count, indexed_at)\n       VALUES (?, ?, ?, ?, ?, ?)`,\n      [record.path, record.contentHash, record.language, record.fileSize, record.symbolCount, record.indexedAt]\n    );\n  }\n\n  getFile(filePath: string): FileRecord | null {\n    const row = this.db.get('SELECT * FROM files WHERE path = ?', [filePath]);\n    return row ? this.rowToFile(row) : null;\n  }\n\n  getAllFiles(): FileRecord[] {\n    return this.db.all('SELECT * FROM files').map(this.rowToFile);\n  }\n\n  deleteFile(filePath: string): void {\n    // Cascade deletes nodes (and their edges via FK)\n    this.db.run('DELETE FROM nodes WHERE file_path = ?', [filePath]);\n    this.db.run('DELETE FROM files WHERE path = ?', [filePath]);\n  }\n\n  private rowToFile(row: any): FileRecord {\n    return {\n      path: row.path,\n      contentHash: row.content_hash,\n      language: row.language as Language,\n      fileSize: row.file_size,\n      symbolCount: row.symbol_count,\n      indexedAt: row.indexed_at,\n    };\n  }\n\n  // \u2500\u2500 Nodes \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  upsertNode(node: Node): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO nodes\n        (id, kind, name, qualified_name, file_path, language,\n         start_line, end_line, start_column, end_column,\n         docstring, signature, visibility,\n         is_exported, is_async, is_static, is_abstract,\n         decorators, type_parameters, updated_at)\n       VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?)`,\n      [\n        node.id, node.kind, node.name, node.qualifiedName, node.filePath, node.language,\n        node.startLine, node.endLine, node.startColumn, node.endColumn,\n        node.docstring ?? null, node.signature ?? null, node.visibility ?? null,\n        node.isExported ? 1 : 0, node.isAsync ? 1 : 0,\n        node.isStatic ? 1 : 0, node.isAbstract ? 1 : 0,\n        node.decorators ? JSON.stringify(node.decorators) : null,\n        node.typeParameters ? JSON.stringify(node.typeParameters) : null,\n        node.updatedAt,\n      ]\n    );\n    // Keep FTS in sync\n    this.db.run(\n      `INSERT OR REPLACE INTO nodes_fts (id, name, qualified_name, docstring, signature)\n       VALUES (?, ?, ?, ?, ?)`,\n      [node.id, node.name, node.qualifiedName, node.docstring ?? '', node.signature ?? '']\n    );\n  }\n\n  getNode(id: string): Node | null {\n    const row = this.db.get('SELECT * FROM nodes WHERE id = ?', [id]);\n    return row ? this.rowToNode(row) : null;\n  }\n\n  getNodesByFile(filePath: string): Node[] {\n    return this.db.all('SELECT * FROM nodes WHERE file_path = ?', [filePath]).map(this.rowToNode);\n  }\n\n  getNodesByKind(kind: Node['kind']): Node[] {\n    return this.db.all('SELECT * FROM nodes WHERE kind = ?', [kind]).map(this.rowToNode);\n  }\n\n  findNodesByExactName(name: string, kinds?: NodeKind[], limit = 20): Node[] {\n    if (kinds && kinds.length > 0) {\n      const placeholders = kinds.map(() => '?').join(',');\n      return this.db.all(\n        `SELECT * FROM nodes WHERE name = ? AND kind IN (${placeholders}) LIMIT ?`,\n        [name, ...kinds, limit]\n      ).map(this.rowToNode);\n    }\n    return this.db.all(\n      'SELECT * FROM nodes WHERE name = ? LIMIT ?',\n      [name, limit]\n    ).map(this.rowToNode);\n  }\n\n  searchNodes(query: string, opts: SearchOptions = {}): Node[] {\n    const { kinds, languages, limit = 20 } = opts;\n    // Sanitize for FTS5: strip special chars and append wildcard.\n    // Both the MATCH value and LIMIT are inlined (not bound via ?) because\n    // node-sqlite3-wasm passes bound parameters through to FTS5's own query\n    // parser before SQLite substitutes them, causing \"syntax error near ?\".\n    const safe = query\n      .replace(/\\b(AND|OR|NOT)\\b/g, ' ')       // FTS5 boolean operators\n      .replace(/['\"*()?\\-+^~:{}\\\\\\.\\/,]/g, ' ')  // FTS5 special chars (incl. / and ,)\n      .replace(/\\s+/g, ' ')\n      .trim();\n    if (!safe) return [];\n\n    const ftsQuery = safe + '*';\n    const safeLimit = Math.max(1, Math.floor(Number(limit)));\n\n    const conditions: string[] = [];\n    const params: any[] = [];\n\n    if (kinds && kinds.length > 0) {\n      conditions.push(`kind IN (${kinds.map(() => '?').join(',')})`);\n      params.push(...kinds);\n    }\n    if (languages && languages.length > 0) {\n      conditions.push(`language IN (${languages.map(() => '?').join(',')})`);\n      params.push(...languages);\n    }\n\n    const where = conditions.length > 0 ? `AND ${conditions.join(' AND ')}` : '';\n\n    return this.db.all(\n      `SELECT * FROM nodes\n       WHERE id IN (SELECT rowid FROM nodes_fts WHERE nodes_fts MATCH '${ftsQuery}')\n       ${where}\n       LIMIT ${safeLimit}`,\n      params\n    ).map(this.rowToNode);\n  }\n\n  searchNodesByName(name: string, opts: SearchOptions = {}): Node[] {\n    const { kinds, languages, limit = 20 } = opts;\n    const pattern = `%${name}%`;\n    const conditions: string[] = ['name LIKE ?'];\n    const params: any[] = [pattern];\n\n    if (kinds && kinds.length > 0) {\n      conditions.push(`kind IN (${kinds.map(() => '?').join(',')})`);\n      params.push(...kinds);\n    }\n    if (languages && languages.length > 0) {\n      conditions.push(`language IN (${languages.map(() => '?').join(',')})`);\n      params.push(...languages);\n    }\n    params.push(limit);\n\n    return this.db.all(\n      `SELECT * FROM nodes WHERE ${conditions.join(' AND ')} LIMIT ?`,\n      params\n    ).map(this.rowToNode);\n  }\n\n  deleteNodesByFile(filePath: string): void {\n    const ids = this.db.all('SELECT id FROM nodes WHERE file_path = ?', [filePath]).map((r: any) => r.id);\n    if (ids.length === 0) return;\n    const placeholders = ids.map(() => '?').join(',');\n    this.db.run(`DELETE FROM edges WHERE source IN (${placeholders}) OR target IN (${placeholders})`, [...ids, ...ids]);\n    this.db.run(`DELETE FROM nodes_fts WHERE id IN (${placeholders})`, ids);\n    this.db.run(`DELETE FROM nodes WHERE file_path = ?`, [filePath]);\n  }\n\n  private rowToNode(row: any): Node {\n    return {\n      id: row.id,\n      kind: row.kind as NodeKind,\n      name: row.name,\n      qualifiedName: row.qualified_name,\n      filePath: row.file_path,\n      language: row.language as Language,\n      startLine: row.start_line,\n      endLine: row.end_line,\n      startColumn: row.start_column,\n      endColumn: row.end_column,\n      docstring: row.docstring ?? undefined,\n      signature: row.signature ?? undefined,\n      visibility: row.visibility ?? undefined,\n      isExported: row.is_exported === 1,\n      isAsync: row.is_async === 1,\n      isStatic: row.is_static === 1,\n      isAbstract: row.is_abstract === 1,\n      decorators: row.decorators ? JSON.parse(row.decorators) : undefined,\n      typeParameters: row.type_parameters ? JSON.parse(row.type_parameters) : undefined,\n      updatedAt: row.updated_at,\n    };\n  }\n\n  // \u2500\u2500 Edges \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  insertEdge(edge: Edge): void {\n    this.db.run(\n      `INSERT OR IGNORE INTO edges (source, target, kind, metadata, line, column)\n       VALUES (?, ?, ?, ?, ?, ?)`,\n      [edge.source, edge.target, edge.kind, edge.metadata ? JSON.stringify(edge.metadata) : null, edge.line ?? null, edge.column ?? null]\n    );\n  }\n\n  getCallers(nodeId: string, limit = 30): Node[] {\n    return this.db.all(\n      `SELECT n.* FROM nodes n\n       JOIN edges e ON e.source = n.id\n       WHERE e.target = ? AND e.kind = 'calls'\n       LIMIT ?`,\n      [nodeId, limit]\n    ).map(this.rowToNode);\n  }\n\n  getCallees(nodeId: string, limit = 30): Node[] {\n    return this.db.all(\n      `SELECT n.* FROM nodes n\n       JOIN edges e ON e.target = n.id\n       WHERE e.source = ? AND e.kind = 'calls'\n       LIMIT ?`,\n      [nodeId, limit]\n    ).map(this.rowToNode);\n  }\n\n  getImpactRadius(nodeId: string, depth = 2): Node[] {\n    // BFS over 'calls' and 'imports' edges (dependents)\n    const visited = new Set<string>([nodeId]);\n    let frontier = [nodeId];\n    for (let d = 0; d < depth; d++) {\n      if (frontier.length === 0) break;\n      const placeholders = frontier.map(() => '?').join(',');\n      const rows = this.db.all(\n        `SELECT DISTINCT source FROM edges WHERE target IN (${placeholders}) AND kind IN ('calls','imports')`,\n        frontier\n      );\n      frontier = [];\n      for (const row of rows) {\n        if (!visited.has(row.source)) {\n          visited.add(row.source);\n          frontier.push(row.source);\n        }\n      }\n    }\n    visited.delete(nodeId);\n    if (visited.size === 0) return [];\n    const ids = [...visited];\n    const placeholders = ids.map(() => '?').join(',');\n    return this.db.all(`SELECT * FROM nodes WHERE id IN (${placeholders})`, ids).map(this.rowToNode);\n  }\n\n  getEdgesForNodes(nodeIds: string[]): Edge[] {\n    if (nodeIds.length === 0) return [];\n    const placeholders = nodeIds.map(() => '?').join(',');\n    return this.db.all(\n      `SELECT * FROM edges WHERE source IN (${placeholders}) OR target IN (${placeholders})`,\n      [...nodeIds, ...nodeIds]\n    ).map((row: any) => ({\n      source: row.source,\n      target: row.target,\n      kind: row.kind,\n      metadata: row.metadata ? JSON.parse(row.metadata) : undefined,\n      line: row.line ?? undefined,\n      column: row.column ?? undefined,\n    }));\n  }\n\n  /**\n   * Find files that import (depend on) the given file path.\n   * Used for affected-test traversal.\n   */\n  getDependentFiles(filePath: string): string[] {\n    // Find nodes in the target file\n    const targetNodes = this.db.all('SELECT id FROM nodes WHERE file_path = ?', [filePath]);\n    if (targetNodes.length === 0) return [];\n    const ids = targetNodes.map((r: any) => r.id);\n    const placeholders = ids.map(() => '?').join(',');\n    // Find source nodes that call/import these target nodes\n    const rows = this.db.all(\n      `SELECT DISTINCT n.file_path FROM nodes n\n       JOIN edges e ON e.source = n.id\n       WHERE e.target IN (${placeholders}) AND e.kind IN ('calls','imports')\n       AND n.file_path != ?`,\n      [...ids, filePath]\n    );\n    return rows.map((r: any) => r.file_path);\n  }\n\n  // \u2500\u2500 Unresolved References \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  insertUnresolvedRef(sourceId: string, refName: string, refKind: string, filePath: string, line?: number, column?: number): void {\n    this.db.run(\n      `INSERT INTO unresolved_refs (source_id, ref_name, ref_kind, file_path, line, column)\n       VALUES (?, ?, ?, ?, ?, ?)`,\n      [sourceId, refName, refKind, filePath, line ?? null, column ?? null]\n    );\n  }\n\n  deleteUnresolvedRefsByFile(filePath: string): void {\n    this.db.run('DELETE FROM unresolved_refs WHERE file_path = ?', [filePath]);\n  }\n\n  /**\n   * Resolve pending references:\n   * - refKind='function': 3-strategy name matching \u2192 'calls' edge\n   * - refKind='import': path-based resolution \u2192 'imports' edge\n   *\n   * Returns the number of edges successfully created.\n   */\n  resolveUnresolvedRefs(): number {\n    const refs = this.db.all('SELECT * FROM unresolved_refs');\n    let resolved = 0;\n\n    for (const ref of refs) {\n      const { id: refId, source_id: sourceId, ref_name: refName, ref_kind: refKind, file_path: filePath, line, column } = ref;\n\n      if (refKind === 'function') {\n        // Strategy 1: exact name match\n        let target = this.db.get('SELECT id FROM nodes WHERE name = ? LIMIT 1', [refName]);\n\n        // Strategy 2: qualified name suffix\n        if (!target) {\n          target = this.db.get(\n            `SELECT id FROM nodes WHERE qualified_name LIKE ? LIMIT 1`,\n            [`%::${refName}`]\n          );\n        }\n\n        // Strategy 3: case-insensitive\n        if (!target) {\n          target = this.db.get(\n            'SELECT id FROM nodes WHERE lower(name) = lower(?) LIMIT 1',\n            [refName]\n          );\n        }\n\n        if (target) {\n          this.insertEdge({ source: sourceId, target: target.id, kind: 'calls', line: line ?? undefined, column: column ?? undefined });\n          this.db.run('DELETE FROM unresolved_refs WHERE id = ?', [refId]);\n          resolved++;\n        }\n      } else if (refKind === 'import') {\n        // Resolve import path to an indexed file\n        const targetFileNode = this.resolveImportPath(refName, filePath);\n        if (targetFileNode) {\n          this.insertEdge({ source: sourceId, target: targetFileNode, kind: 'imports', line: line ?? undefined, column: column ?? undefined });\n          this.db.run('DELETE FROM unresolved_refs WHERE id = ?', [refId]);\n          resolved++;\n        }\n      }\n    }\n\n    return resolved;\n  }\n\n  /** @deprecated Use resolveUnresolvedRefs() */\n  resolveCallEdges(): number {\n    return this.resolveUnresolvedRefs();\n  }\n\n  /**\n   * Resolve a module import path to the ID of the first node in the target file.\n   * Returns null if no indexed file matches.\n   */\n  private resolveImportPath(importPath: string, sourceFilePath: string): string | null {\n    // Only resolve relative imports\n    if (!importPath.startsWith('.')) return null;\n\n    const sourceDir = sourceFilePath.replace(/[^/]+$/, '');\n    // Normalize the relative path\n    const segments = (sourceDir + importPath).split('/');\n    const normalized: string[] = [];\n    for (const seg of segments) {\n      if (seg === '..') normalized.pop();\n      else if (seg !== '.') normalized.push(seg);\n    }\n    const basePath = normalized.join('/');\n\n    // Try exact match, then with common extensions\n    const candidates = [\n      basePath,\n      basePath + '.ts',\n      basePath + '.tsx',\n      basePath + '.js',\n      basePath + '.jsx',\n      basePath + '/index.ts',\n      basePath + '/index.tsx',\n      basePath + '/index.js',\n    ];\n\n    for (const candidate of candidates) {\n      const row = this.db.get('SELECT id FROM nodes WHERE file_path = ? LIMIT 1', [candidate]);\n      if (row) return row.id;\n    }\n\n    return null;\n  }\n\n  // \u2500\u2500 Node Context & Metrics \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  getNodeContext(nodeId: string): NodeContext | null {\n    const node = this.getNode(nodeId);\n    if (!node) return null;\n\n    const ancestors = this.db.all(\n      `SELECT n.* FROM nodes n\n       JOIN edges e ON e.target = n.id\n       WHERE e.source = ? AND e.kind = 'contains'`,\n      [nodeId]\n    ).map(this.rowToNode);\n\n    const children = this.db.all(\n      `SELECT n.* FROM nodes n\n       JOIN edges e ON e.source = n.id\n       WHERE e.target = n.id AND e.source = ? AND e.kind = 'contains'`,\n      [nodeId]\n    ).map(this.rowToNode);\n\n    const callers = this.getCallers(nodeId, 20);\n    const callees = this.getCallees(nodeId, 20);\n\n    return { node, ancestors, children, callers, callees };\n  }\n\n  getNodeMetrics(nodeId: string): NodeMetrics {\n    const incomingEdgeCount = (this.db.get('SELECT COUNT(*) as c FROM edges WHERE target = ?', [nodeId])?.c ?? 0);\n    const outgoingEdgeCount = (this.db.get('SELECT COUNT(*) as c FROM edges WHERE source = ?', [nodeId])?.c ?? 0);\n    const callCount = (this.db.get(`SELECT COUNT(*) as c FROM edges WHERE source = ? AND kind = 'calls'`, [nodeId])?.c ?? 0);\n    const callerCount = (this.db.get(`SELECT COUNT(*) as c FROM edges WHERE target = ? AND kind = 'calls'`, [nodeId])?.c ?? 0);\n    const childCount = (this.db.get(`SELECT COUNT(*) as c FROM edges WHERE source = ? AND kind = 'contains'`, [nodeId])?.c ?? 0);\n    return { incomingEdgeCount, outgoingEdgeCount, callCount, callerCount, childCount };\n  }\n\n  // \u2500\u2500 Graph Analysis \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  /**\n   * Find symbols with no incoming edges (potential dead code).\n   * Excludes exported symbols since they may be consumed externally.\n   */\n  findDeadCode(limit = 50): Node[] {\n    return this.db.all(\n      `SELECT * FROM nodes\n       WHERE kind IN ('function','method','class')\n         AND is_exported = 0\n         AND id NOT IN (SELECT DISTINCT target FROM edges)\n       LIMIT ?`,\n      [limit]\n    ).map(this.rowToNode);\n  }\n\n  /**\n   * Find circular import dependencies using DFS over import edges.\n   * Returns arrays of file paths forming cycles.\n   */\n  findCircularDependencies(): string[][] {\n    // Build adjacency map: file \u2192 imported files\n    const rows = this.db.all(\n      `SELECT DISTINCT n1.file_path as src, n2.file_path as dst\n       FROM edges e\n       JOIN nodes n1 ON n1.id = e.source\n       JOIN nodes n2 ON n2.id = e.target\n       WHERE e.kind = 'imports' AND n1.file_path != n2.file_path`\n    );\n\n    const adj = new Map<string, Set<string>>();\n    for (const row of rows) {\n      if (!adj.has(row.src)) adj.set(row.src, new Set());\n      adj.get(row.src)!.add(row.dst);\n    }\n\n    const cycles: string[][] = [];\n    const visited = new Set<string>();\n    const pathSet = new Set<string>();\n    const pathArr: string[] = [];\n\n    function dfs(node: string): void {\n      if (pathSet.has(node)) {\n        const cycleStart = pathArr.indexOf(node);\n        cycles.push(pathArr.slice(cycleStart).concat(node));\n        return;\n      }\n      if (visited.has(node)) return;\n      visited.add(node);\n      pathSet.add(node);\n      pathArr.push(node);\n      for (const neighbor of adj.get(node) ?? []) {\n        dfs(neighbor);\n      }\n      pathArr.pop();\n      pathSet.delete(node);\n    }\n\n    for (const node of adj.keys()) {\n      if (!visited.has(node)) dfs(node);\n    }\n\n    return cycles;\n  }\n\n  /**\n   * Find the shortest path between two nodes via directed BFS (outgoing edges only).\n   */\n  findPath(fromId: string, toId: string, maxDepth = 10): Node[] {\n    if (fromId === toId) {\n      const node = this.getNode(fromId);\n      return node ? [node] : [];\n    }\n\n    const prev = new Map<string, string>();\n    const queue: string[] = [fromId];\n    const visited = new Set<string>([fromId]);\n    let depth = 0;\n\n    outer: while (queue.length > 0 && depth < maxDepth) {\n      const levelSize = queue.length;\n      depth++;\n      for (let i = 0; i < levelSize; i++) {\n        const current = queue.shift()!;\n        // Directed: only follow outgoing edges\n        const rows = this.db.all(\n          `SELECT DISTINCT target as next FROM edges WHERE source = ?`,\n          [current]\n        );\n        for (const row of rows) {\n          if (!visited.has(row.next)) {\n            visited.add(row.next);\n            prev.set(row.next, current);\n            if (row.next === toId) break outer;\n            queue.push(row.next);\n          }\n        }\n      }\n    }\n\n    if (!prev.has(toId)) return [];\n\n    // Reconstruct path\n    const pathIds: string[] = [];\n    let cur: string | undefined = toId;\n    while (cur !== undefined) {\n      pathIds.unshift(cur);\n      cur = prev.get(cur);\n    }\n\n    const result: Node[] = [];\n    for (const id of pathIds) {\n      const node = this.getNode(id);\n      if (node) result.push(node);\n    }\n    return result;\n  }\n\n  /**\n   * Traverse type hierarchy via 'extends' and 'implements' edges.\n   * direction 'up' = base types, 'down' = derived types, 'both' = all.\n   */\n  getTypeHierarchy(nodeId: string, direction: 'up' | 'down' | 'both' = 'both'): Node[] {\n    const visited = new Set<string>([nodeId]);\n    const frontier = [nodeId];\n    const result: Node[] = [];\n\n    while (frontier.length > 0) {\n      const current = frontier.shift()!;\n      let rows: any[] = [];\n\n      if (direction === 'up' || direction === 'both') {\n        // current extends/implements something \u2192 go up\n        const up = this.db.all(\n          `SELECT target as id FROM edges WHERE source = ? AND kind IN ('extends','implements')`,\n          [current]\n        );\n        rows = rows.concat(up);\n      }\n      if (direction === 'down' || direction === 'both') {\n        // something extends/implements current \u2192 go down\n        const down = this.db.all(\n          `SELECT source as id FROM edges WHERE target = ? AND kind IN ('extends','implements')`,\n          [current]\n        );\n        rows = rows.concat(down);\n      }\n\n      for (const row of rows) {\n        if (!visited.has(row.id)) {\n          visited.add(row.id);\n          frontier.push(row.id);\n          const node = this.getNode(row.id);\n          if (node) result.push(node);\n        }\n      }\n    }\n\n    return result;\n  }\n\n  // \u2500\u2500 Stats \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  getEmbeddingCount(): number {\n    try {\n      const row = this.db.get('SELECT COUNT(*) as c FROM vectors');\n      return row ? row.c : 0;\n    } catch {\n      return 0;\n    }\n  }\n\n  storeEmbedding(nodeId: string, embedding: Float32Array, model: string): void {\n    const buf = Buffer.from(embedding.buffer);\n    this.db.run(\n      `INSERT OR REPLACE INTO vectors (node_id, embedding, model, created_at) VALUES (?, ?, ?, ?)`,\n      [nodeId, buf, model, Date.now()]\n    );\n  }\n\n  getEmbeddedNodeIds(): string[] {\n    return this.db.all('SELECT node_id FROM vectors').map((r: any) => r.node_id);\n  }\n\n  getAllEmbeddings(): Array<{ nodeId: string; embedding: Float32Array }> {\n    const rows = this.db.all('SELECT node_id, embedding FROM vectors');\n    return rows.map((r: any) => ({\n      nodeId: r.node_id as string,\n      embedding: new Float32Array(\n        (r.embedding as Buffer).buffer,\n        (r.embedding as Buffer).byteOffset,\n        (r.embedding as Buffer).byteLength / 4\n      ),\n    }));\n  }\n\n  getAllNodes(): import('../types').Node[] {\n    return this.db.all('SELECT * FROM nodes').map(this.rowToNode);\n  }\n\n  /**\n   * Returns embeddable nodes in pages for memory-efficient streaming.\n   * `kinds` filters by node kind (e.g. ['function','method','class']).\n   * Returns an empty array when offset >= total count.\n   */\n  getEmbeddableNodesPaged(kinds: string[], limit: number, offset: number): import('../types').Node[] {\n    if (kinds.length === 0) return [];\n    const placeholders = kinds.map(() => '?').join(',');\n    return this.db.all(\n      `SELECT * FROM nodes WHERE kind IN (${placeholders}) LIMIT ? OFFSET ?`,\n      [...kinds, limit, offset]\n    ).map(this.rowToNode);\n  }\n\n  /** Count of nodes whose kind is in the provided list. */\n  countEmbeddableNodes(kinds: string[]): number {\n    if (kinds.length === 0) return 0;\n    const placeholders = kinds.map(() => '?').join(',');\n    const row = this.db.get(`SELECT COUNT(*) as c FROM nodes WHERE kind IN (${placeholders})`, kinds);\n    return row?.c ?? 0;\n  }\n\n  getAllEdges(): Edge[] {\n    return this.db.all('SELECT source, target, kind FROM edges').map((row: any) => ({\n      source: row.source,\n      target: row.target,\n      kind: row.kind,\n    }));\n  }\n\n  /**\n   * Find the top-N most-connected nodes by total edge degree (in + out).\n   * Excludes 'contains' edges (structural nesting, not semantic connections).\n   */\n  findHotspots(limit = 20): Array<Node & { degree: number; inDegree: number; outDegree: number }> {\n    const rows = this.db.all(\n      `SELECT n.*,\n         (SELECT COUNT(*) FROM edges WHERE target = n.id AND kind != 'contains') AS in_degree,\n         (SELECT COUNT(*) FROM edges WHERE source = n.id AND kind != 'contains') AS out_degree,\n         (SELECT COUNT(*) FROM edges WHERE (source = n.id OR target = n.id) AND kind != 'contains') AS degree\n       FROM nodes n\n       ORDER BY degree DESC\n       LIMIT ?`,\n      [limit]\n    );\n    return rows.map((row: any) => ({\n      ...this.rowToNode(row),\n      degree: row.degree as number,\n      inDegree: row.in_degree as number,\n      outDegree: row.out_degree as number,\n    }));\n  }\n\n  /**\n   * Find surprising cross-file connections: direct edges between nodes in\n   * structurally distant files. Scored by path distance \u00D7 edge-kind weight.\n   */\n  findSurprisingConnections(limit = 20): Array<{ source: Node; target: Node; kind: string; score: number }> {\n    const KIND_WEIGHT: Record<string, number> = {\n      calls: 1.0, references: 0.8, type_of: 0.7, returns: 0.6,\n      decorates: 0.6, extends: 0.5, implements: 0.5,\n    };\n\n    const rows: Array<{ source: string; target: string; kind: string; source_file: string; target_file: string }> =\n      this.db.all(\n        `SELECT e.source, e.target, e.kind,\n                ns.file_path AS source_file, nt.file_path AS target_file\n         FROM edges e\n         JOIN nodes ns ON ns.id = e.source\n         JOIN nodes nt ON nt.id = e.target\n         WHERE ns.file_path != nt.file_path\n           AND e.kind NOT IN ('contains', 'import', 'imports')\n         LIMIT 5000`\n      );\n\n    // Score: path distance \u00D7 kind weight\n    const scored = rows.map(row => {\n      const srcDirs = row.source_file.split('/').slice(0, -1);\n      const tgtDirs = row.target_file.split('/').slice(0, -1);\n      let common = 0;\n      for (let i = 0; i < Math.min(srcDirs.length, tgtDirs.length); i++) {\n        if (srcDirs[i] === tgtDirs[i]) common++;\n        else break;\n      }\n      const maxDirs = Math.max(srcDirs.length, tgtDirs.length, 1);\n      const pathSimilarity = common / maxDirs;\n      const kindWeight = KIND_WEIGHT[row.kind] ?? 0.4;\n      return { ...row, score: (1 - pathSimilarity) * kindWeight };\n    });\n\n    // Sort desc, deduplicate by source+target+kind\n    scored.sort((a, b) => b.score - a.score);\n    const seen = new Set<string>();\n    const top: typeof scored = [];\n    for (const row of scored) {\n      const key = `${row.source}|${row.target}|${row.kind}`;\n      if (!seen.has(key)) {\n        seen.add(key);\n        top.push(row);\n        if (top.length >= limit) break;\n      }\n    }\n\n    const result: Array<{ source: Node; target: Node; kind: string; score: number }> = [];\n    for (const row of top) {\n      const src = this.getNode(row.source);\n      const tgt = this.getNode(row.target);\n      if (src && tgt) result.push({ source: src, target: tgt, kind: row.kind, score: row.score });\n    }\n    return result;\n  }\n\n  getStats(): GraphStats {\n    const files = this.db.get('SELECT COUNT(*) as c FROM files').c;\n    const nodes = this.db.get('SELECT COUNT(*) as c FROM nodes').c;\n    const edges = this.db.get('SELECT COUNT(*) as c FROM edges').c;\n    const kindRows = this.db.all('SELECT kind, COUNT(*) as c FROM nodes GROUP BY kind');\n    const nodesByKind: Record<string, number> = {};\n    for (const row of kindRows) nodesByKind[row.kind] = row.c;\n    const langRows = this.db.all('SELECT language, COUNT(*) as c FROM files GROUP BY language');\n    const filesByLanguage: Record<string, number> = {};\n    for (const row of langRows) filesByLanguage[row.language] = row.c;\n    const dbPath = path.join(this.projectRoot, '.kirograph', 'kirograph.db');\n    let dbSizeBytes = 0;\n    try { dbSizeBytes = fs.statSync(dbPath).size; } catch { /* ignore */ }\n    const embeddingCount = this.getEmbeddingCount();\n    return { files, nodes, edges, nodesByKind, filesByLanguage, dbSizeBytes, embeddingCount, embeddingsEnabled: false, embeddingModel: '', useVecIndex: false, semanticEngine: 'cosine' as const, vecIndexCount: 0, engineFallback: null, embeddableNodeCount: 0, frameworks: [], architectureEnabled: false };\n  }\n\n  // \u2500\u2500 Architecture \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  clearArchitecture(): void {\n    this.db.run('DELETE FROM arch_coupling');\n    this.db.run('DELETE FROM arch_layer_deps');\n    this.db.run('DELETE FROM arch_package_deps');\n    this.db.run('DELETE FROM arch_file_layers');\n    this.db.run('DELETE FROM arch_file_packages');\n    this.db.run('DELETE FROM arch_layers');\n    this.db.run('DELETE FROM arch_packages');\n  }\n\n  upsertArchPackage(pkg: ArchPackage): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_packages\n        (id, name, path, source, language, manifest_path, version, external_deps, metadata, updated_at)\n       VALUES (?,?,?,?,?,?,?,?,?,?)`,\n      [\n        pkg.id, pkg.name, pkg.path, pkg.source,\n        pkg.language ?? null, pkg.manifestPath ?? null, pkg.version ?? null,\n        pkg.externalDeps ? JSON.stringify(pkg.externalDeps) : null,\n        pkg.metadata ? JSON.stringify(pkg.metadata) : null,\n        pkg.updatedAt,\n      ]\n    );\n  }\n\n  upsertArchLayer(layer: ArchLayer): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_layers (id, name, source, patterns, metadata, updated_at)\n       VALUES (?,?,?,?,?,?)`,\n      [\n        layer.id, layer.name, layer.source,\n        JSON.stringify(layer.patterns),\n        layer.metadata ? JSON.stringify(layer.metadata) : null,\n        layer.updatedAt,\n      ]\n    );\n  }\n\n  upsertArchFilePackage(filePath: string, packageId: string): void {\n    this.db.run(\n      'INSERT OR IGNORE INTO arch_file_packages (file_path, package_id) VALUES (?,?)',\n      [filePath, packageId]\n    );\n  }\n\n  upsertArchFileLayer(filePath: string, layerId: string, confidence: number, matchedPattern: string): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence, matched_pattern)\n       VALUES (?,?,?,?)`,\n      [filePath, layerId, confidence, matchedPattern]\n    );\n  }\n\n  upsertArchPackageDep(sourcePkg: string, targetPkg: string, depCount: number, files?: Array<{ from: string; to: string }>): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_package_deps (source_pkg, target_pkg, dep_count, files)\n       VALUES (?,?,?,?)`,\n      [sourcePkg, targetPkg, depCount, files ? JSON.stringify(files) : null]\n    );\n  }\n\n  upsertArchLayerDep(sourceLayer: string, targetLayer: string, depCount: number): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_layer_deps (source_layer, target_layer, dep_count)\n       VALUES (?,?,?)`,\n      [sourceLayer, targetLayer, depCount]\n    );\n  }\n\n  upsertArchCoupling(coupling: ArchCoupling): void {\n    this.db.run(\n      `INSERT OR REPLACE INTO arch_coupling (package_id, afferent, efferent, instability, updated_at)\n       VALUES (?,?,?,?,?)`,\n      [coupling.packageId, coupling.afferent, coupling.efferent, coupling.instability, coupling.updatedAt]\n    );\n  }\n\n  getArchPackages(): ArchPackage[] {\n    return this.db.all('SELECT * FROM arch_packages').map((r: any): ArchPackage => ({\n      id: r.id,\n      name: r.name,\n      path: r.path,\n      source: r.source,\n      language: r.language ?? undefined,\n      manifestPath: r.manifest_path ?? undefined,\n      version: r.version ?? undefined,\n      externalDeps: r.external_deps ? JSON.parse(r.external_deps) : undefined,\n      metadata: r.metadata ? JSON.parse(r.metadata) : undefined,\n      updatedAt: r.updated_at,\n    }));\n  }\n\n  getArchLayers(): ArchLayer[] {\n    return this.db.all('SELECT * FROM arch_layers').map((r: any): ArchLayer => ({\n      id: r.id,\n      name: r.name,\n      source: r.source,\n      patterns: JSON.parse(r.patterns),\n      metadata: r.metadata ? JSON.parse(r.metadata) : undefined,\n      updatedAt: r.updated_at,\n    }));\n  }\n\n  getArchPackageDeps(): ArchPackageDep[] {\n    return this.db.all('SELECT * FROM arch_package_deps').map((r: any): ArchPackageDep => ({\n      sourcePkg: r.source_pkg,\n      targetPkg: r.target_pkg,\n      depCount: r.dep_count,\n      files: r.files ? JSON.parse(r.files) : undefined,\n    }));\n  }\n\n  getArchLayerDeps(): ArchLayerDep[] {\n    return this.db.all('SELECT * FROM arch_layer_deps').map((r: any): ArchLayerDep => ({\n      sourceLayer: r.source_layer,\n      targetLayer: r.target_layer,\n      depCount: r.dep_count,\n    }));\n  }\n\n  getArchCoupling(): ArchCoupling[] {\n    return this.db.all('SELECT * FROM arch_coupling').map((r: any): ArchCoupling => ({\n      packageId: r.package_id,\n      afferent: r.afferent,\n      efferent: r.efferent,\n      instability: r.instability,\n      updatedAt: r.updated_at,\n    }));\n  }\n\n  getArchStats(): { packages: number; layers: number; packageDeps: number } {\n    return {\n      packages: this.db.get('SELECT COUNT(*) as c FROM arch_packages')?.c ?? 0,\n      layers: this.db.get('SELECT COUNT(*) as c FROM arch_layers')?.c ?? 0,\n      packageDeps: this.db.get('SELECT COUNT(*) as c FROM arch_package_deps')?.c ?? 0,\n    };\n  }\n\n  /**\n   * Return file-to-file import relationships by joining edges + nodes.\n   * Used by ArchitectureAnalyzer to roll up package-level dependencies.\n   */\n  getFileImportPairs(): Array<{ sourceFile: string; targetFile: string }> {\n    return this.db.all(\n      `SELECT DISTINCT n1.file_path as source_file, n2.file_path as target_file\n       FROM edges e\n       JOIN nodes n1 ON n1.id = e.source\n       JOIN nodes n2 ON n2.id = e.target\n       WHERE e.kind = 'imports' AND n1.file_path != n2.file_path`\n    ).map((r: any) => ({ sourceFile: r.source_file, targetFile: r.target_file }));\n  }\n\n  getArchFilePackages(): Array<{ filePath: string; packageId: string }> {\n    return this.db.all('SELECT file_path, package_id FROM arch_file_packages')\n      .map((r: any) => ({ filePath: r.file_path, packageId: r.package_id }));\n  }\n\n  getArchFileLayers(): Array<{ filePath: string; layerId: string; confidence: number; matchedPattern: string }> {\n    return this.db.all('SELECT file_path, layer_id, confidence, matched_pattern FROM arch_file_layers')\n      .map((r: any) => ({\n        filePath: r.file_path,\n        layerId: r.layer_id,\n        confidence: r.confidence,\n        matchedPattern: r.matched_pattern,\n      }));\n  }\n\n  getArchitectureResult(): {\n    packages: ArchPackage[];\n    layers: ArchLayer[];\n    packageDeps: ArchPackageDep[];\n    layerDeps: ArchLayerDep[];\n    coupling: ArchCoupling[];\n  } {\n    return {\n      packages: this.getArchPackages(),\n      layers: this.getArchLayers(),\n      packageDeps: this.getArchPackageDeps(),\n      layerDeps: this.getArchLayerDeps(),\n      coupling: this.getArchCoupling(),\n    };\n  }\n\n  // \u2500\u2500 Transactions \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n  transaction<T>(fn: () => T): T {\n    this.db.run('BEGIN');\n    try {\n      const result = fn();\n      this.db.run('COMMIT');\n      return result;\n    } catch (err) {\n      this.db.run('ROLLBACK');\n      throw err;\n    }\n  }\n\n  close(): void {\n    this.db.close();\n  }\n}\n"],
+  "mappings": 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   "names": ["placeholders"]
 }

package/dist/db/memory-schema.sql

@@ -0,0 +1,51 @@
+-- KiroGraph Memory Schema (opt-in, enableMemory=true)
+-- Isolated from core graph tables. No FK to nodes(id) to avoid cascade on reindex.
+
+CREATE TABLE IF NOT EXISTS mem_sessions (
+  id TEXT PRIMARY KEY,
+  ide TEXT,
+  cwd TEXT,
+  started_at INTEGER NOT NULL,
+  ended_at INTEGER
+);
+
+CREATE INDEX IF NOT EXISTS idx_mem_sessions_started ON mem_sessions(started_at);
+
+CREATE TABLE IF NOT EXISTS mem_observations (
+  id TEXT PRIMARY KEY,
+  session_id TEXT REFERENCES mem_sessions(id) ON DELETE SET NULL,
+  content TEXT NOT NULL,
+  content_raw TEXT,
+  content_hash TEXT,
+  kind TEXT NOT NULL,
+  source TEXT NOT NULL DEFAULT 'hook',
+  tags TEXT,
+  created_at INTEGER NOT NULL
+);
+
+CREATE UNIQUE INDEX IF NOT EXISTS idx_mem_obs_hash ON mem_observations(content_hash);
+CREATE INDEX IF NOT EXISTS idx_mem_obs_session ON mem_observations(session_id);
+CREATE INDEX IF NOT EXISTS idx_mem_obs_kind ON mem_observations(kind);
+CREATE INDEX IF NOT EXISTS idx_mem_obs_created ON mem_observations(created_at);
+
+CREATE VIRTUAL TABLE IF NOT EXISTS mem_fts USING fts5(
+  id UNINDEXED,
+  content,
+  kind UNINDEXED
+);
+
+CREATE TABLE IF NOT EXISTS mem_links (
+  observation_id TEXT NOT NULL REFERENCES mem_observations(id) ON DELETE CASCADE,
+  qualified_name TEXT NOT NULL,
+  relevance REAL NOT NULL DEFAULT 1.0,
+  PRIMARY KEY (observation_id, qualified_name)
+);
+
+CREATE INDEX IF NOT EXISTS idx_mem_links_qname ON mem_links(qualified_name);
+
+CREATE TABLE IF NOT EXISTS mem_vectors (
+  observation_id TEXT PRIMARY KEY REFERENCES mem_observations(id) ON DELETE CASCADE,
+  embedding BLOB NOT NULL,
+  model TEXT NOT NULL,
+  created_at INTEGER NOT NULL
+);

package/dist/index.js

@@ -281,6 +281,9 @@ class KiroGraph {
   getProjectRoot() {
     return this.projectRoot;
   }
+  getDatabase() {
+    return this.db;
+  }
   close() {
     this.vectors.close();
     this.lock.release();