kiokuko-dsh 0.1.0

package/dist/memory/hybrid-retrieval.js

@@ -0,0 +1,398 @@
+import { KiokukoError } from '../errors.js';
+import { parseRetrievalQuery, normalizeSearchSignal } from './retrieval-query.js';
+import { compareCanonicalStrings, ENTRY_KINDS, ENTRY_STATUSES } from '../serialization/validate.js';
+import { readEntry } from './entries.js';
+import { isExternalSkillReference, readExternalSkill } from '../skills/store.js';
+const MAX_LANE_CANDIDATES = 120;
+const MAX_MERGED_CANDIDATES = 1_000;
+const RRF_K = 60;
+const LANE_WEIGHTS = {
+    'exact-signal': 5,
+    'word-fts': 3,
+    trigram: 1.5,
+    like: 0.75,
+    tag: 3,
+    semantic: 2.5,
+};
+/** Decide eligibility only after the entry and the complete parent snapshot decode. */
+export function isRetrievableEntry(database, entry) {
+    const mappingRows = database.prepare(`
+    SELECT skill_id
+      FROM external_skill_entries
+     WHERE entry_id = ?
+     ORDER BY skill_id, source_path, chunk_index
+  `).all(entry.id);
+    const markedExternal = isExternalSkillReference(entry);
+    if (!markedExternal && mappingRows.length === 0)
+        return true;
+    if (!markedExternal) {
+        throw new KiokukoError('INTEGRITY_ERROR', 'A managed external skill mapping points to an ordinary entry');
+    }
+    if (mappingRows.length === 0)
+        return false;
+    const skillIds = new Set();
+    for (const mapping of mappingRows) {
+        if (typeof mapping.skill_id !== 'string' || mapping.skill_id.length === 0) {
+            throw new KiokukoError('INTEGRITY_ERROR', 'Managed external skill mapping is invalid');
+        }
+        skillIds.add(mapping.skill_id);
+    }
+    if (skillIds.size !== 1) {
+        throw new KiokukoError('INTEGRITY_ERROR', 'A managed external skill entry has multiple parent skills');
+    }
+    const skillId = [...skillIds][0];
+    const detail = readExternalSkill(database, skillId);
+    if (detail === undefined)
+        throw new KiokukoError('INTEGRITY_ERROR', 'Managed external skill parent is missing');
+    const active = detail.entries.filter((mapping) => mapping.entryId === entry.id && mapping.active);
+    if (active.length > 1)
+        throw new KiokukoError('INTEGRITY_ERROR', 'Managed external skill entry has multiple active mappings');
+    return active.length === 1 && active[0].revision === entry.revision;
+}
+/** Count current entries in one workspace that are eligible for ordinary retrieval. */
+export function retrievableWorkspaceEntryCount(database, workspace) {
+    const count = database.prepare(`
+    WITH current_entries AS (
+      SELECT e.id, e.current_revision,
+             CASE WHEN e.created_by IN ('kiokuko-skill-discovery', 'kiokuko-source-sync')
+                    OR CASE WHEN json_valid(r.provenance_json)
+                         THEN json_extract(r.provenance_json, '$.type') END
+                       IN ('external_skill', 'source_sync')
+                  THEN 1 ELSE 0 END AS external_marker
+        FROM entries AS e
+        JOIN entry_revisions AS r
+          ON r.entry_id = e.id AND r.revision = e.current_revision
+       WHERE e.workspace = ? AND e.status <> 'superseded'
+    )
+    SELECT COUNT(*) AS count
+      FROM current_entries AS e
+     WHERE (
+       e.external_marker = 0
+       AND NOT EXISTS (
+         SELECT 1 FROM external_skill_entries AS m WHERE m.entry_id = e.id
+       )
+     ) OR (
+       e.external_marker = 1
+       AND (SELECT COUNT(DISTINCT m.skill_id)
+              FROM external_skill_entries AS m WHERE m.entry_id = e.id) = 1
+       AND (SELECT COUNT(*)
+              FROM external_skill_entries AS m
+             WHERE m.entry_id = e.id AND m.active = 1) = 1
+       AND EXISTS (
+         SELECT 1
+           FROM external_skill_entries AS m
+           JOIN external_skills AS s ON s.skill_id = m.skill_id
+          WHERE m.entry_id = e.id
+            AND m.entry_revision = e.current_revision
+            AND m.active = 1
+       )
+     )
+  `).get(workspace)?.count;
+    if (typeof count !== 'number' || !Number.isSafeInteger(count) || count < 0) {
+        throw new KiokukoError('INTEGRITY_ERROR', 'Stored entry count is invalid');
+    }
+    return count;
+}
+function invalid() {
+    throw new KiokukoError('VALIDATION_ERROR', 'Search query is invalid');
+}
+function quotedFts(value) {
+    return `"${value.replaceAll('"', '""')}"`;
+}
+function escapedLike(value) {
+    return value.replaceAll('\\', '\\\\').replaceAll('%', '\\%').replaceAll('_', '\\_');
+}
+function wordTokens(value) {
+    return value.normalize('NFKD').replace(/\p{M}/gu, '').toLowerCase().match(/[\p{L}\p{N}_$@]+/gu) ?? [];
+}
+function containsTokenSequence(source, expected) {
+    if (expected.length === 0 || expected.length > source.length)
+        return false;
+    for (let start = 0; start <= source.length - expected.length; start += 1) {
+        if (expected.every((token, offset) => source[start + offset] === token))
+            return true;
+    }
+    return false;
+}
+function hasCanonicalWordMatch(database, input, row, value) {
+    const entry = readEntry(database, { workspace: input.workspace, entryId: row.id });
+    const expected = wordTokens(value);
+    const source = wordTokens([entry.title, entry.body, entry.summary ?? '', ...entry.tags].join('\n'));
+    return containsTokenSequence(source, expected);
+}
+function filterSql(input, parameters) {
+    const clauses = ['e.workspace = ?'];
+    parameters.push(input.workspace);
+    return clauses.join(' AND ');
+}
+function rankSql() {
+    return `CASE e.status WHEN 'verified' THEN 0 WHEN 'candidate' THEN 1 ELSE 2 END,
+    CASE e.trust_level WHEN 'system_verified' THEN 0 WHEN 'source_verified' THEN 1 WHEN 'user_asserted' THEN 2 ELSE 3 END,
+    e.confidence DESC, e.updated_at DESC, e.id ASC`;
+}
+function exactSignalLane(database, input, parsed) {
+    const values = [...new Set([
+            parsed.normalized.length <= 512 ? normalizeSearchSignal(parsed.normalized) : '',
+            ...parsed.exactSignals.map((signal) => signal.normalizedValue),
+        ])].filter(Boolean).slice(0, 32);
+    if (values.length === 0)
+        return [];
+    const parameters = [input.workspace, ...values];
+    const filters = filterSql(input, parameters);
+    parameters.push(MAX_LANE_CANDIDATES);
+    return database.prepare(`
+    SELECT e.id, COUNT(*) AS score
+    FROM entry_search_signals AS s
+    JOIN entries AS e ON e.id = s.entry_id
+    JOIN entry_revisions AS r ON r.entry_id = e.id AND r.revision = e.current_revision
+    WHERE e.workspace = ? AND s.normalized_value IN (${values.map(() => '?').join(', ')}) AND ${filters}
+    GROUP BY e.id
+    ORDER BY score DESC, ${rankSql()}
+    LIMIT ?
+  `).all(...parameters);
+}
+function tagLane(database, input, parsed) {
+    const values = [...new Set([
+            ...parsed.lexicalTerms,
+            ...parsed.exactSignals.map((signal) => signal.value),
+        ].map(normalizeSearchSignal).filter((value) => value.length > 1))].slice(0, 32);
+    if (values.length === 0)
+        return [];
+    const parameters = [];
+    const filters = filterSql(input, parameters);
+    const tagParameters = values.map(() => '?').join(', ');
+    parameters.unshift(...values);
+    parameters.push(MAX_LANE_CANDIDATES);
+    return database.prepare(`
+    SELECT e.id, COUNT(*) AS score
+    FROM entry_revision_tags AS t
+    JOIN entries AS e ON e.id = t.entry_id AND e.current_revision = t.revision
+    JOIN entry_revisions AS r ON r.entry_id = e.id AND r.revision = e.current_revision
+    WHERE lower(t.tag) IN (${tagParameters}) AND ${filters}
+    GROUP BY e.id
+    ORDER BY score DESC, ${rankSql()}
+    LIMIT ?
+  `).all(...parameters);
+}
+function wordFtsLane(database, input, parsed) {
+    const values = [...new Set([...parsed.lexicalTerms, ...parsed.phraseTerms])]
+        .filter((value) => value.length > 0)
+        .slice(0, 24);
+    const rows = [];
+    for (const value of values) {
+        let candidates;
+        if (Array.from(value).length >= 3) {
+            const parameters = [quotedFts(value)];
+            const filters = filterSql(input, parameters);
+            parameters.push(MAX_LANE_CANDIDATES);
+            candidates = database.prepare(`
+        SELECT e.id, bm25(entries_fts) AS score
+        FROM entries_fts JOIN entries e ON e.rowid = entries_fts.rowid
+        JOIN entry_revisions r ON r.entry_id = e.id AND r.revision = e.current_revision
+        WHERE entries_fts MATCH ? AND ${filters}
+        ORDER BY score ASC, ${rankSql()}
+        LIMIT ?
+      `).all(...parameters);
+        }
+        else {
+            const pattern = `%${escapedLike(value)}%`;
+            const parameters = [pattern, pattern, pattern, pattern];
+            const filters = filterSql(input, parameters);
+            parameters.push(MAX_LANE_CANDIDATES);
+            candidates = database.prepare(`
+        SELECT e.id, 0 AS score
+        FROM entry_search_documents AS d
+        JOIN entries AS e ON e.rowid = d.entry_rowid
+        JOIN entry_revisions AS r ON r.entry_id = e.id AND r.revision = e.current_revision
+        WHERE (d.title LIKE ? ESCAPE '\\' OR d.body LIKE ? ESCAPE '\\'
+          OR d.summary LIKE ? ESCAPE '\\' OR d.tags_text LIKE ? ESCAPE '\\')
+          AND ${filters}
+        ORDER BY ${rankSql()}
+        LIMIT ?
+      `).all(...parameters);
+        }
+        rows.push(...candidates.filter((row) => hasCanonicalWordMatch(database, input, row, value)));
+    }
+    return rows;
+}
+function trigramLane(database, input, parsed) {
+    const values = parsed.substringTerms.filter((value) => Array.from(value).length >= 3).slice(0, 24);
+    const rows = new Map();
+    for (const value of values) {
+        const parameters = [quotedFts(value)];
+        const filters = filterSql(input, parameters);
+        parameters.push(MAX_LANE_CANDIDATES);
+        const matches = database.prepare(`
+      SELECT e.id, bm25(entries_trigram) AS score
+      FROM entries_trigram JOIN entries e ON e.rowid = entries_trigram.rowid
+      JOIN entry_revisions r ON r.entry_id = e.id AND r.revision = e.current_revision
+      WHERE entries_trigram MATCH ? AND ${filters}
+      ORDER BY score ASC, ${rankSql()}
+      LIMIT ?
+    `).all(...parameters);
+        const cjkWindow = /[\p{Script=Han}\p{Script=Hiragana}\p{Script=Katakana}]/u.test(value);
+        for (const match of matches) {
+            const existing = rows.get(match.id);
+            if (existing !== undefined) {
+                if (cjkWindow)
+                    existing.cjkWindow = true;
+            }
+            else {
+                rows.set(match.id, { ...match, ...(cjkWindow ? { cjkWindow: true } : {}) });
+            }
+        }
+    }
+    return [...rows.values()];
+}
+function likeLane(database, input, parsed) {
+    const values = [...new Set([
+            ...parsed.exactSignals.map((signal) => signal.value),
+            ...parsed.substringTerms,
+        ])].filter((value) => value.length > 1).slice(0, 12);
+    if (values.length === 0)
+        return [];
+    const result = new Map();
+    for (const value of values) {
+        const pattern = `%${escapedLike(value)}%`;
+        const parameters = [pattern, pattern, pattern, pattern];
+        const filters = filterSql(input, parameters);
+        parameters.push(MAX_LANE_CANDIDATES);
+        const rows = database.prepare(`
+      SELECT e.id, 0 AS score FROM entries AS e
+      JOIN entry_revisions AS r ON r.entry_id = e.id AND r.revision = e.current_revision
+      WHERE (r.title LIKE ? ESCAPE '\\' OR r.body LIKE ? ESCAPE '\\' OR COALESCE(r.summary, '') LIKE ? ESCAPE '\\'
+        OR EXISTS (SELECT 1 FROM entry_revision_tags t WHERE t.entry_id = e.id AND t.revision = e.current_revision AND t.tag LIKE ? ESCAPE '\\'))
+        AND ${filters}
+      ORDER BY ${rankSql()} LIMIT ?
+    `).all(...parameters);
+        for (const row of rows)
+            result.set(row.id, row);
+    }
+    return [...result.values()];
+}
+function semanticLane(database, input, runtime) {
+    const semantic = runtime.semantic;
+    if (semantic === undefined)
+        return [];
+    const { query, backend } = semantic;
+    if (typeof query.profileId !== 'string' || query.profileId.length === 0
+        || !Number.isSafeInteger(query.dimensions) || query.dimensions < 2 || query.dimensions > 8192
+        || !(query.vector instanceof Float32Array) || query.vector.length !== query.dimensions
+        || !Number.isFinite(query.distanceCeiling) || query.distanceCeiling < 0 || query.distanceCeiling >= 2
+        || typeof query.backendId !== 'string' || query.backendId.length === 0
+        || query.backendId !== backend.id) {
+        throw new KiokukoError('INTEGRITY_ERROR', 'Prepared semantic query is invalid');
+    }
+    const hits = backend.search(database, {
+        profileId: query.profileId,
+        dimensions: query.dimensions,
+        queryVector: query.vector,
+        distanceCeiling: query.distanceCeiling,
+        workspace: input.workspace,
+        limit: MAX_LANE_CANDIDATES,
+    });
+    if (!Array.isArray(hits) || hits.length > MAX_LANE_CANDIDATES) {
+        throw new KiokukoError('INTEGRITY_ERROR', 'Semantic backend returned too many candidates');
+    }
+    const canonical = new Map();
+    for (const hit of hits) {
+        if (typeof hit !== 'object' || hit === null
+            || typeof hit.entryId !== 'string' || hit.entryId.length === 0
+            || !Number.isFinite(hit.distance) || hit.distance < 0) {
+            throw new KiokukoError('INTEGRITY_ERROR', 'Semantic backend returned an invalid candidate');
+        }
+        if (hit.distance > query.distanceCeiling)
+            continue;
+        const previous = canonical.get(hit.entryId);
+        if (previous === undefined || hit.distance < previous)
+            canonical.set(hit.entryId, hit.distance);
+    }
+    return [...canonical.entries()]
+        .sort((left, right) => left[1] - right[1] || compareCanonicalStrings(left[0], right[0]))
+        .map(([id]) => ({ id }));
+}
+function laneRows(database, input, parsed, runtime, lexicalAllowed) {
+    const rows = [['exact-signal', exactSignalLane(database, input, parsed)]];
+    if (lexicalAllowed) {
+        rows.push(['word-fts', wordFtsLane(database, input, parsed)], ['trigram', trigramLane(database, input, parsed)], ['like', likeLane(database, input, parsed)], ['tag', tagLane(database, input, parsed)]);
+    }
+    if (runtime.semantic !== undefined)
+        rows.push(['semantic', semanticLane(database, input, runtime)]);
+    return rows;
+}
+export function hybridSearch(database, input, runtime = {}) {
+    if (typeof input.workspace !== 'string' || input.workspace.trim().length === 0)
+        invalid();
+    if (!Number.isSafeInteger(input.limit) || input.limit < 1 || input.limit > 1_000)
+        invalid();
+    if (input.kind !== undefined && !ENTRY_KINDS.includes(input.kind))
+        invalid();
+    if (input.status !== undefined && !ENTRY_STATUSES.includes(input.status))
+        invalid();
+    if (input.tag !== undefined && (typeof input.tag !== 'string' || input.tag.length === 0))
+        invalid();
+    const parsed = parseRetrievalQuery(input.query);
+    if (parsed.normalized.length === 0)
+        return [];
+    // Treat SQL/FTS-looking operator soup as data, not as a broad OR query. A
+    // punctuation-heavy request must never turn into a full-table lexical scan.
+    const lexicalAllowed = !/(?:--|\/\*|\*\/|["']\s*(?:OR|AND)\b|\b(?:OR|AND)\s+\d+\s*[=<>])/iu.test(parsed.normalized)
+        || parsed.exactSignals.length > 0;
+    const merged = new Map();
+    for (const [lane, rows] of laneRows(database, input, parsed, runtime, lexicalAllowed)) {
+        const seen = new Set();
+        let rank = 0;
+        for (const row of rows) {
+            if (seen.has(row.id))
+                continue;
+            seen.add(row.id);
+            rank += 1;
+            const existing = merged.get(row.id) ?? { entryId: row.id, fusedScore: 0, laneRanks: {}, matchedSignals: [], reasons: [] };
+            existing.fusedScore += LANE_WEIGHTS[lane] / (RRF_K + rank);
+            existing.laneRanks[lane] = Math.min(existing.laneRanks[lane] ?? rank, rank);
+            if (lane === 'exact-signal')
+                existing.reasons.push('exact_signal_match');
+            if (lane === 'word-fts')
+                existing.reasons.push('word_match');
+            if (lane === 'trigram') {
+                existing.reasons.push('substring_match');
+                if (row.cjkWindow === true)
+                    existing.reasons.push('cjk_window_match');
+            }
+            if (lane === 'like')
+                existing.reasons.push('literal_fallback_match');
+            if (lane === 'tag')
+                existing.reasons.push('tag_match');
+            if (lane === 'semantic')
+                existing.reasons.push('semantic_match');
+            existing.matchedSignals.push(...parsed.exactSignals.map((signal) => signal.value));
+            merged.set(row.id, existing);
+            if (merged.size >= MAX_MERGED_CANDIDATES)
+                break;
+        }
+    }
+    const candidates = [...merged.values()]
+        .map((candidate) => ({
+        ...candidate,
+        matchedSignals: [...new Set(candidate.matchedSignals)].sort(),
+        reasons: [...new Set(candidate.reasons)].sort(),
+    }))
+        .sort((left, right) => right.fusedScore - left.fusedScore || compareCanonicalStrings(left.entryId, right.entryId));
+    // Candidate generation may use projections, but every semantic predicate is
+    // applied only to the canonical decoded record.
+    return candidates.filter((candidate) => {
+        const entry = readEntry(database, { workspace: input.workspace, entryId: candidate.entryId });
+        if (!isRetrievableEntry(database, entry))
+            return false;
+        if (!input.includeSuperseded && entry.status === 'superseded')
+            return false;
+        if (input.kind !== undefined && entry.kind !== input.kind)
+            return false;
+        if (input.status !== undefined && entry.status !== input.status)
+            return false;
+        if (input.tag !== undefined && !entry.tags.includes(input.tag))
+            return false;
+        return true;
+    });
+}
+//# sourceMappingURL=hybrid-retrieval.js.map

package/dist/memory/hybrid-retrieval.js.map

@@ -0,0 +1 @@
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package/dist/memory/lifecycle.d.ts

@@ -0,0 +1,29 @@
+import type { SqliteDatabase } from '../db/adapter.js';
+import { type EntryRecord } from './entries.js';
+export interface PromoteInput {
+    workspace: string;
+    entryId: string;
+    expectedRevision: number;
+    actor?: string;
+    now?: string;
+}
+export interface SupersedeInput {
+    workspace: string;
+    oldEntryId: string;
+    replacementEntryId: string;
+    expectedRevision: number;
+    actor?: string;
+    now?: string;
+}
+export interface LinkInput {
+    workspace: string;
+    fromEntryId: string;
+    toEntryId: string;
+    relation: 'supports' | 'contradicts' | 'derived_from' | 'related_to';
+    actor?: string;
+    now?: string;
+}
+export declare function promoteEntry(database: SqliteDatabase, input: PromoteInput): EntryRecord;
+export declare function supersedeEntry(database: SqliteDatabase, input: SupersedeInput): EntryRecord;
+export declare function linkEntries(database: SqliteDatabase, input: LinkInput): void;
+//# sourceMappingURL=lifecycle.d.ts.map

package/dist/memory/lifecycle.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"lifecycle.d.ts","sourceRoot":"","sources":["../../src/memory/lifecycle.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAC;AAGvD,OAAO,EAAa,KAAK,WAAW,EAAE,MAAM,cAAc,CAAC;AAG3D,MAAM,WAAW,YAAY;IAC3B,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;IAChB,gBAAgB,EAAE,MAAM,CAAC;IACzB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,cAAc;IAC7B,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,kBAAkB,EAAE,MAAM,CAAC;IAC3B,gBAAgB,EAAE,MAAM,CAAC;IACzB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,SAAS;IACxB,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,EAAE,UAAU,GAAG,aAAa,GAAG,cAAc,GAAG,YAAY,CAAC;IACrE,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAQD,wBAAgB,YAAY,CAAC,QAAQ,EAAE,cAAc,EAAE,KAAK,EAAE,YAAY,GAAG,WAAW,CAevF;AAED,wBAAgB,cAAc,CAAC,QAAQ,EAAE,cAAc,EAAE,KAAK,EAAE,cAAc,GAAG,WAAW,CAkB3F;AAED,wBAAgB,WAAW,CAAC,QAAQ,EAAE,cAAc,EAAE,KAAK,EAAE,SAAS,GAAG,IAAI,CAU5E"}

package/dist/memory/lifecycle.js

@@ -0,0 +1,65 @@
+import { withImmediateTransaction } from '../db/transaction.js';
+import { KiokukoError } from '../errors.js';
+import { readEntry } from './entries.js';
+import { recordAuditEvent } from './audit.js';
+function ensureRevision(expectedRevision) {
+    if (!Number.isInteger(expectedRevision) || expectedRevision < 1) {
+        throw new KiokukoError('VALIDATION_ERROR', 'expectedRevision must be a positive integer');
+    }
+}
+export function promoteEntry(database, input) {
+    ensureRevision(input.expectedRevision);
+    const now = input.now ?? new Date().toISOString();
+    const actor = input.actor ?? 'kiokuko-cli';
+    return withImmediateTransaction(database, () => {
+        const current = readEntry(database, { workspace: input.workspace, entryId: input.entryId });
+        const managedExternal = database.prepare('SELECT 1 AS present FROM external_skill_entries WHERE entry_id = ? LIMIT 1').get(input.entryId);
+        if (managedExternal)
+            throw new KiokukoError('CONFLICT', 'Managed external Skill entries cannot be promoted');
+        if (current.revision !== input.expectedRevision)
+            throw new KiokukoError('CONFLICT', 'Entry revision is stale');
+        if (current.status !== 'candidate')
+            throw new KiokukoError('CONFLICT', 'Only candidate entries can be promoted');
+        database.prepare("UPDATE entries SET status = 'verified', verified_at = ?, updated_at = ? WHERE id = ? AND workspace = ? AND current_revision = ?")
+            .run(now, now, input.entryId, input.workspace, input.expectedRevision);
+        recordAuditEvent(database, { entryId: input.entryId, workspace: input.workspace, operation: 'promote', actor, details: { expectedRevision: input.expectedRevision }, createdAt: now });
+        return readEntry(database, { workspace: input.workspace, entryId: input.entryId });
+    });
+}
+export function supersedeEntry(database, input) {
+    ensureRevision(input.expectedRevision);
+    if (input.oldEntryId === input.replacementEntryId)
+        throw new KiokukoError('VALIDATION_ERROR', 'An entry cannot supersede itself');
+    const now = input.now ?? new Date().toISOString();
+    const actor = input.actor ?? 'kiokuko-cli';
+    return withImmediateTransaction(database, () => {
+        const oldEntry = readEntry(database, { workspace: input.workspace, entryId: input.oldEntryId });
+        const replacement = readEntry(database, { workspace: input.workspace, entryId: input.replacementEntryId });
+        const managedExternal = database.prepare('SELECT 1 AS present FROM external_skill_entries WHERE entry_id IN (?, ?) LIMIT 1').get(input.oldEntryId, input.replacementEntryId);
+        if (managedExternal)
+            throw new KiokukoError('CONFLICT', 'Managed external Skill entries cannot be superseded');
+        if (oldEntry.revision !== input.expectedRevision)
+            throw new KiokukoError('CONFLICT', 'Entry revision is stale');
+        if (oldEntry.status === 'superseded')
+            throw new KiokukoError('CONFLICT', 'Entry is already superseded');
+        if (replacement.status === 'superseded')
+            throw new KiokukoError('CONFLICT', 'A superseded entry cannot be a replacement');
+        database.prepare("UPDATE entries SET status = 'superseded', superseded_by = ?, updated_at = ? WHERE id = ? AND workspace = ? AND current_revision = ?")
+            .run(input.replacementEntryId, now, input.oldEntryId, input.workspace, input.expectedRevision);
+        recordAuditEvent(database, { entryId: input.oldEntryId, workspace: input.workspace, operation: 'supersede', actor, details: { replacementEntryId: input.replacementEntryId, expectedRevision: input.expectedRevision }, createdAt: now });
+        return readEntry(database, { workspace: input.workspace, entryId: input.oldEntryId });
+    });
+}
+export function linkEntries(database, input) {
+    const now = input.now ?? new Date().toISOString();
+    const actor = input.actor ?? 'kiokuko-cli';
+    withImmediateTransaction(database, () => {
+        const count = database.prepare('SELECT COUNT(*) AS count FROM entries WHERE workspace = ? AND id IN (?, ?)').get(input.workspace, input.fromEntryId, input.toEntryId)?.count ?? 0;
+        if (count !== 2)
+            throw new KiokukoError('NOT_FOUND', 'Entry not found');
+        database.prepare('INSERT INTO entry_links (from_entry_id, to_entry_id, relation, created_at, created_by) VALUES (?, ?, ?, ?, ?)')
+            .run(input.fromEntryId, input.toEntryId, input.relation, now, actor);
+        recordAuditEvent(database, { entryId: input.fromEntryId, workspace: input.workspace, operation: 'link', actor, details: { toEntryId: input.toEntryId, relation: input.relation }, createdAt: now });
+    });
+}
+//# sourceMappingURL=lifecycle.js.map

package/dist/memory/lifecycle.js.map

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package/dist/memory/portability.d.ts

@@ -0,0 +1,10 @@
+import type { EntryRecord } from './entries.js';
+export type PortableEntryFields = Pick<EntryRecord, 'workspace' | 'title' | 'summary' | 'body' | 'tags' | 'scope' | 'provenance'>;
+export interface PortabilityAnalysis {
+    portable: boolean;
+    projectSpecific: boolean;
+    reasons: string[];
+}
+export declare function analyzePortability(entry: PortableEntryFields): PortabilityAnalysis;
+export declare function containsProjectSpecificData(value: string, entry: Pick<EntryRecord, 'workspace' | 'scope' | 'provenance'>): boolean;
+//# sourceMappingURL=portability.d.ts.map

package/dist/memory/portability.d.ts.map

@@ -0,0 +1 @@
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package/dist/memory/portability.js

@@ -0,0 +1,44 @@
+const ABSOLUTE_PATH = /(?:\/(?:Users|home|private|workspace|tmp|var|opt)\/|[A-Za-z]:[\\/])/u;
+const PROJECT_RELATIVE_PATH = /(?:^|[^\p{L}\p{N}_.-])(?:\.[\\/])?(?:src|tests?|app|lib|packages?|config|resources|migrations|scripts?|docs?|\.github)[\\/][A-Za-z0-9_.@/\\-]+/u;
+const PROJECT_LANGUAGE = /(?:この(?:リポジトリ|プロジェクト)|当(?:リポジトリ|プロジェクト)|本プロジェクト|this (?:repository|project)|the current repository|the current project|project-specific|project:|repo_[a-z0-9_-]+)/iu;
+function knownProjectValues(entry) {
+    const scope = entry.scope;
+    const provenance = entry.provenance;
+    const values = [entry.workspace, scope.repositoryId, provenance.sourceWorkspace, provenance.sourceRepositoryId];
+    if (Array.isArray(provenance.sourcePaths))
+        values.push(...provenance.sourcePaths);
+    return [...new Set(values.filter((value) => typeof value === 'string' && value.length >= 3))]
+        .sort((left, right) => right.length - left.length);
+}
+function structuredPathSignals(entry) {
+    const signals = entry.scope.signals;
+    if (typeof signals !== 'object' || signals === null || Array.isArray(signals))
+        return [];
+    const paths = signals.paths;
+    return Array.isArray(paths) ? paths.filter((value) => typeof value === 'string') : [];
+}
+export function analyzePortability(entry) {
+    const text = [entry.title, entry.summary ?? '', entry.body, ...entry.tags, ...structuredPathSignals(entry)].join('\n').normalize('NFKC');
+    const reasons = [];
+    if (knownProjectValues(entry).some((value) => text.includes(value.normalize('NFKC'))))
+        reasons.push('project-identifier');
+    if (ABSOLUTE_PATH.test(text))
+        reasons.push('absolute-path');
+    if (PROJECT_RELATIVE_PATH.test(text))
+        reasons.push('project-relative-path');
+    if (PROJECT_LANGUAGE.test(text))
+        reasons.push('project-specific-language');
+    const sourcePaths = entry.provenance.sourcePaths;
+    if (Array.isArray(sourcePaths) && sourcePaths.length > 0)
+        reasons.push('provenance-source-path');
+    return { portable: reasons.length === 0, projectSpecific: reasons.length > 0, reasons };
+}
+export function containsProjectSpecificData(value, entry) {
+    const text = value.normalize('NFKC');
+    const values = knownProjectValues(entry);
+    return values.some((known) => text.includes(known.normalize('NFKC')))
+        || ABSOLUTE_PATH.test(text)
+        || PROJECT_RELATIVE_PATH.test(text)
+        || PROJECT_LANGUAGE.test(text);
+}
+//# sourceMappingURL=portability.js.map

package/dist/memory/portability.js.map

@@ -0,0 +1 @@
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package/dist/memory/rebuild-search.d.ts

@@ -0,0 +1,24 @@
+import type { SqliteDatabase } from '../db/adapter.js';
+/** Rebuild the projection shape used only while migrations 005 through 019 are being applied. */
+export declare function rebuildLegacyHybridSearchInTransaction(database: SqliteDatabase): {
+    entries: number;
+    signals: number;
+};
+/** Rebuild while participating in a transaction already owned by the caller. */
+export declare function rebuildHybridSearchInTransaction(database: SqliteDatabase): {
+    entries: number;
+    signals: number;
+};
+export declare function rebuildHybridSearch(database: SqliteDatabase): {
+    entries: number;
+    signals: number;
+};
+export declare function hybridSearchProjectionStatus(database: SqliteDatabase): {
+    trigram: number;
+    signals: number;
+    entries: number;
+    missingSignals: number;
+    extraSignals: number;
+    staleTrigram: number;
+};
+//# sourceMappingURL=rebuild-search.d.ts.map

package/dist/memory/rebuild-search.d.ts.map

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