keywordgraph-mcp-server 1.9.4 → 1.9.5

package/dist/tools/generateOntologyGraph.js

@@ -243,6 +243,8 @@ export const generateOntologyGraphTool = {
                         output.statistics = structured.statistics;
                         output.graphSummary = structured.graphSummary;
                         output.contentGaps = structured.contentGaps;
+                        if (structured.insightClusters)
+                            output.insightClusters = structured.insightClusters;
                         output.mainTopicalClusters = structured.mainTopicalClusters;
                         output.mainConcepts = structured.mainConcepts;
                         output.conceptualGateways = structured.conceptualGateways;

package/dist/tools/generateOntologyGraph.js.map

@@ -1 +1 @@
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package/dist/tools/generateResearchIdeas.d.ts

@@ -15,6 +15,7 @@ export declare const generateResearchIdeasTool: {
             graphName: z.ZodOptional<z.ZodString>;
             userName: z.ZodOptional<z.ZodString>;
             useSeveralGaps: z.ZodDefault<z.ZodBoolean>;
+            optimize: z.ZodDefault<z.ZodEnum<["optimize", "gap", "develop", "latent"]>>;
             gapDepth: z.ZodDefault<z.ZodNumber>;
             shouldTranscend: z.ZodDefault<z.ZodBoolean>;
             responseType: z.ZodDefault<z.ZodEnum<["response", "idea"]>>;

package/dist/tools/generateResearchIdeas.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"generateResearchIdeas.d.ts","sourceRoot":"","sources":["../../src/tools/generateResearchIdeas.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EACN,2BAA2B,EAE3B,MAAM,qBAAqB,CAAC;AAkB7B,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAcb,CAAC,CAAC,KAAK,CAAC,OAAO,2BAA2B,CAAC;;;;;;;;;;;;CA+FnE,CAAC"}

package/dist/tools/generateResearchIdeas.js

@@ -15,7 +15,7 @@ export const generateResearchIdeasTool = {
     name: "generate_research_ideas",
     definition: {
         title: "Generate Research Ideas from Text or Graph",
-        description: "Analyze text or an existing graph and generate innovative research ideas based on the content gaps identified between the topical clusters inside the text that can be used to improve the text and the discourse it relates to.",
+        description: "Analyze text or an existing graph and generate innovative research ideas that bridge its topical clusters and can be used to improve the text and the discourse it relates to. By default (optimize: 'optimize') the ideas bridge the insight clusters: the clusters picked from the structure of the graph (biased / focused / diversified / dispersed) whose connection moves it toward a balanced shape; they are returned as insightClusters. Set optimize to 'gap' for the widest content gap, 'develop' for the main topics, 'latent' for under-developed ones.",
         inputSchema: GenerateResearchIdeasSchemaBase.shape,
         annotations: {
             readOnlyHint: true,
@@ -30,10 +30,11 @@ export const generateResearchIdeasTool = {
             const queryParams = new URLSearchParams({
                 doNotSave: "true",
                 addStats: "true",
-                optimize: "gap",
+                optimize: params.optimize ?? "optimize",
                 includeStatements: "false",
                 includeGraphSummary: params.includeGraphSummary ? "true" : "false",
-                extendedGraphSummary: "false",
+                // the insight clusters arrive in the extended summary
+                extendedGraphSummary: "true",
                 includeGraph: "false",
                 aiTopics: "true",
                 extendedAdvice: params.useSeveralGaps ? "true" : "false",

package/dist/tools/generateResearchIdeas.js.map

@@ -1 +1 @@
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package/dist/tools/generateResearchQuestions.d.ts

@@ -15,6 +15,7 @@ export declare const generateResearchQuestionsTool: {
             graphName: z.ZodOptional<z.ZodString>;
             userName: z.ZodOptional<z.ZodString>;
             useSeveralGaps: z.ZodDefault<z.ZodBoolean>;
+            optimize: z.ZodDefault<z.ZodEnum<["optimize", "gap", "develop", "latent"]>>;
             gapDepth: z.ZodDefault<z.ZodNumber>;
             includeGraphSummary: z.ZodDefault<z.ZodBoolean>;
             modelToUse: z.ZodDefault<z.ZodEnum<["claude-opus-5-5", "claude-sonnet-5-5", "claude-fable-5-1", "gpt-6.1-terra", "gpt-6.1-sol", "gpt-5.6-terra", "gpt-5.6-sol", "gpt-5.4", "gpt-5.4-mini", "gpt-4o", "gpt-4o-mini", "gemini-4-argon", "gemini-3.8-flash", "gemini-3.5-flash-lite", "grok-4.7", "grok-4.20-0309-non-reasoning"]>>;

package/dist/tools/generateResearchQuestions.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"generateResearchQuestions.d.ts","sourceRoot":"","sources":["../../src/tools/generateResearchQuestions.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EACN,+BAA+B,EAE/B,MAAM,qBAAqB,CAAC;AAe7B,eAAO,MAAM,6BAA6B;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAcjB,CAAC,CAAC,KAAK,CAAC,OAAO,+BAA+B,CAAC;;;;;;;;;;;;CAyFvE,CAAC"}

package/dist/tools/generateResearchQuestions.js

@@ -15,7 +15,7 @@ export const generateResearchQuestionsTool = {
     name: "generate_research_questions",
     definition: {
         title: "Generate Research Questions from Text",
-        description: "Analyze text or an existing graph and generate innovative research questions based on the content gaps identified between the topical clusters. Provide either text, url, or graphName. Can be used to improve the text and the discourse it relates to",
+        description: "Analyze text or an existing graph and generate innovative research questions that bridge its topical clusters. By default (optimize: 'optimize') the questions bridge the insight clusters: the clusters picked from the structure of the graph (biased / focused / diversified / dispersed) whose connection moves it toward a balanced shape; they are returned as insightClusters. Set optimize to 'gap' for the widest content gap, 'develop' for the main topics, 'latent' for under-developed ones. Provide either text, url, or graphName. Can be used to improve the text and the discourse it relates to",
         inputSchema: GenerateResearchQuestionsSchemaBase.shape,
         annotations: {
             readOnlyHint: true,
@@ -30,10 +30,11 @@ export const generateResearchQuestionsTool = {
             const queryParams = new URLSearchParams({
                 doNotSave: "true",
                 addStats: "true",
-                optimize: "gap",
+                optimize: params.optimize ?? "optimize",
                 includeStatements: "false",
                 includeGraphSummary: params.includeGraphSummary ? "true" : "false",
-                extendedGraphSummary: "false",
+                // the insight clusters arrive in the extended summary
+                extendedGraphSummary: "true",
                 includeGraph: "false",
                 aiTopics: "true",
                 extendedAdvice: params.useSeveralGaps ? "true" : "false",

package/dist/tools/generateResearchQuestions.js.map

@@ -1 +1 @@
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package/dist/tools/optimizeKnowledgeBase.d.ts

@@ -15,7 +15,9 @@ export declare const optimizeKnowledgeBaseTool: {
             saveAs: z.ZodOptional<z.ZodString>;
             focus: z.ZodDefault<z.ZodEnum<["general", "codebase", "vault", "procedural"]>>;
             compareWith: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
-            includeLatent: z.ZodDefault<z.ZodBoolean>;
+            optimize: z.ZodDefault<z.ZodEnum<["optimize", "develop", "latent"]>>;
+            gapDepth: z.ZodDefault<z.ZodNumber>;
+            includeLatent: z.ZodOptional<z.ZodBoolean>;
             modelToUse: z.ZodDefault<z.ZodEnum<["claude-opus-5-5", "claude-sonnet-5-5", "claude-fable-5-1", "gpt-6.1-terra", "gpt-6.1-sol", "gpt-5.6-terra", "gpt-5.6-sol", "gpt-5.4", "gpt-5.4-mini", "gpt-4o", "gpt-4o-mini", "gemini-4-argon", "gemini-3.8-flash", "gemini-3.5-flash-lite", "grok-4.7", "grok-4.20-0309-non-reasoning"]>>;
         };
         annotations: {

package/dist/tools/optimizeKnowledgeBase.d.ts.map

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+{"version":3,"file":"optimizeKnowledgeBase.d.ts","sourceRoot":"","sources":["../../src/tools/optimizeKnowledgeBase.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EAAE,2BAA2B,EAAE,MAAM,qBAAqB,CAAC;AAelE,OAAO,KAAK,EAAiB,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AAiE3E,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;sBAsB5B,CAAC,CAAC,KAAK,CAAC,OAAO,2BAA2B,CAAC,YACzC,kBAAkB;;;;;;;;;;;;CA2M7B,CAAC"}

package/dist/tools/optimizeKnowledgeBase.js

@@ -2,7 +2,7 @@ import { brand } from "../config/brand.js";
 import { OptimizeKnowledgeBaseSchema } from "../schemas/index.js";
 import { makeInfraNodusRequest } from "../api/client.js";
 import { resolveGraphInput } from "../utils/graphInput.js";
-import { generateOptimizationResult, extractLatentTopicsIdeas, transformToStructuredOutput, } from "../utils/transformers.js";
+import { generateOptimizationResult, extractLatentTopicsIdeas, insightClustersOf, transformToStructuredOutput, } from "../utils/transformers.js";
 import { dedupeList, normalizeState, readState, } from "../utils/knowledgeBase.js";
 import { ProgressReporter } from "../utils/progress.js";
 import { DEFAULT_AI_MODEL } from "../config/models.js";
@@ -61,6 +61,7 @@ export const optimizeKnowledgeBaseTool = {
             `Give it the graph built from the project (graphName: e.g. repo-<project>-digest or vault-<project>-digest — the LLM-written digest of how it works — repo-<project>-structure, repo-<project>-docs, vault-<project>-links, learn-<project>) and set focus to how the reading should be framed (codebase, vault, procedural, general). ` +
             `No graph yet? Write a digest of the project (100–300 one-line statements on how it works, [[wikilinks]] on modules, concepts and files, grouped under \`## [[Topic]]\` headings) and pass it as text with saveAs: repo-<project>-digest (vault-<project>-digest for a notes vault). ` +
             `It diagnoses the structure (biased / focused / diversified / dispersed) and translates it: what dominates, which areas are under-developed, which clusters never connect (missing integrations, missing bridge notes, missing hand-offs between frameworks), with AI suggestions for what to develop next. ` +
+            `The suggestions follow optimize: 'optimize' (default) works on the insight clusters, the ones picked from the structure whose connection moves the graph toward a balanced shape (returned as insightClusters; gapDepth moves to the next set), 'develop' on all the main topics, 'latent' on the under-developed ones. ` +
             `compareWith names other layers of the same project (e.g. digest vs structure, docs vs code) and reports what each layer has that the other lacks — rules without code, code without documentation, features claimed but not built. ` +
             `Memory works the same way: a learn-, memory- or personal- graph by graphName, or another memory system's items passed as they are in statements (nothing is saved without saveAs). Then propose statements that bridge the gaps, each with 2+ [[wikilinks]], and save only the ones the user approves (add_project_learnings / memory_add_relations). ` +
             `Use it after the infranodus skill has ingested a repo or vault, or on any saved graph, when the user asks to optimize, review, or find what is missing or under-developed in a project, vault, set of rules, or memory.`,
@@ -76,7 +77,11 @@ export const optimizeKnowledgeBaseTool = {
         try {
             const focus = params.focus ?? "general";
             const modelToUse = params.modelToUse ?? DEFAULT_AI_MODEL;
-            const includeLatent = params.includeLatent !== false;
+            const mode = params.optimize ?? "optimize";
+            const gapDepth = params.gapDepth ?? 0;
+            // 'optimize' follows the insight clusters only, so the latent pass is
+            // added there on request; 'latent' already is that pass.
+            const includeLatent = mode !== "latent" && (params.includeLatent ?? mode === "develop");
             const compareWith = dedupeList(params.compareWith ?? [], 2);
             const steps = 1 + (includeLatent ? 1 : 0) + compareWith.length * 2;
             const progress = new ProgressReporter(context ?? {}, steps);
@@ -138,12 +143,13 @@ export const optimizeKnowledgeBaseTool = {
                 includeGraph: "true",
                 compactGraph: "true",
                 aiTopics: "true",
-                optimize: "develop",
+                optimize: mode,
+                gapDepth: gapDepth.toString(),
             });
             const develop = await makeInfraNodusRequest(`/graphAndAdvice?${developQuery.toString()}`, {
                 ...sourceBody,
                 aiTopics: "true",
-                requestMode: "response",
+                requestMode: mode === "latent" ? "transcend" : "response",
                 modelToUse,
             });
             if (develop.error)
@@ -155,7 +161,9 @@ export const optimizeKnowledgeBaseTool = {
             const state = normalizeState(stateRaw);
             // 2. Under-developed (latent) topics.
             let latentIdeas = [];
-            let latentTopics = [];
+            let latentTopics = mode === "latent"
+                ? dedupeList(extractLatentTopicsIdeas(develop).latentTopicsToDevelop ?? [], 8)
+                : [];
             if (includeLatent) {
                 await progress.report(step++, "Finding under-developed areas");
                 const latentQuery = new URLSearchParams({
@@ -201,15 +209,18 @@ export const optimizeKnowledgeBaseTool = {
             await progress.report(steps, "Done");
             const reading = state ? readState(focus, state) : undefined;
             const mainClusters = dedupeList(optimization.mainTopicalClusters ?? [], 10);
+            const insightClusters = insightClustersOf(develop);
             const report = {
                 source: sourceLabel,
                 focus,
+                optimize: mode,
                 state: state ?? "unknown",
                 ...(reading ? { meaning: reading.meaning, action: reading.action } : {}),
                 dominant: mainClusters[0],
                 mainClusters,
                 underdeveloped: dedupeList([...(optimization.topicsToDevelop ?? []), ...latentTopics], 10),
                 missingBridges: dedupeList(optimization.contentGaps ?? [], 8),
+                ...(insightClusters ? { insightClusters, gapDepth } : {}),
                 gateways: dedupeList(optimization.conceptualGateways ?? [], 8),
                 suggestions: dedupeList(optimization.suggestions ?? [], 6),
                 ...(latentIdeas.length ? { latentIdeas } : {}),

package/dist/tools/optimizeKnowledgeBase.js.map

@@ -1 +1 @@
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package/dist/types/index.d.ts

@@ -173,6 +173,7 @@ export interface GraphResponse {
     graphSummary?: string;
     extendedGraphSummary?: {
         contentGaps?: string[];
+        insightClusters?: string[];
         mainTopics?: string[];
         mainTopicNames?: string[];
         mainConcepts?: string[];
@@ -221,6 +222,7 @@ export interface SummaryOutput {
 }
 export interface InsightsOutput {
     contentGaps?: string[];
+    insightClusters?: string[];
     mainTopics?: string[];
     mainConcepts?: string[];
     conceptsToDevelop?: string[];
@@ -270,6 +272,7 @@ export interface KnowledgeGraphOutput {
     };
     graphSummary?: string;
     contentGaps?: string[];
+    insightClusters?: string[];
     mainTopicalClusters?: string[];
     mainConcepts?: string[];
     topInfluentialNodes?: Array<{
@@ -291,6 +294,7 @@ export interface KnowledgeGraphOutput {
 }
 export interface GapsOutput {
     contentGaps?: string[];
+    insightClusters?: string[];
 }
 export interface TopicsOutput {
     topicalClusters?: string[];
@@ -320,6 +324,7 @@ export interface OntologyGraphOutput {
     };
     graphSummary?: string;
     contentGaps?: string[];
+    insightClusters?: string[];
     mainTopicalClusters?: string[];
     mainConcepts?: string[];
     topInfluentialNodes?: Array<{
@@ -344,10 +349,13 @@ export interface GraphOverview {
     textOverview?: string;
 }
 export interface ResearchQuestionsOutput {
+    /** The clusters the AI bridged, per gap depth (see the tool's `optimize` input). */
+    insightClusters?: string[];
     questions?: string[];
     graphSummary?: string;
     extendedGraphSummary?: {
         contentGaps?: string[];
+        insightClusters?: string[];
         mainTopics?: string[];
         mainConcepts?: string[];
         conceptualGateways?: string[];
@@ -365,6 +373,7 @@ export interface GraphRagOutput {
     }>;
     graphSummary?: string;
     contentGaps?: string[];
+    insightClusters?: string[];
     mainTopicalClusters?: string[];
     mainTopicNames?: string[];
     mainConcepts?: string[];
@@ -385,10 +394,13 @@ export interface GraphRagOutput {
     isPublic?: boolean;
 }
 export interface ResearchIdeasOutput {
+    /** The clusters the AI bridged, per gap depth (see the tool's `optimize` input). */
+    insightClusters?: string[];
     ideas?: string[];
     graphSummary?: string;
     extendedGraphSummary?: {
         contentGaps?: string[];
+        insightClusters?: string[];
         mainTopics?: string[];
         mainConcepts?: string[];
         conceptualGateways?: string[];
@@ -407,10 +419,13 @@ export interface LatentTopicsOutput {
     latentTopicsToDevelop?: string[];
 }
 export interface ResponsesOutput {
+    /** The clusters the AI bridged, per gap depth (see the tool's `optimize` input). */
+    insightClusters?: string[];
     responses?: string[];
     graphSummary?: string;
     extendedGraphSummary?: {
         contentGaps?: string[];
+        insightClusters?: string[];
         mainTopics?: string[];
         mainConcepts?: string[];
         conceptualGateways?: string[];
@@ -422,6 +437,7 @@ export interface OptimizeTextOutput {
     suggestions?: string[];
     mainTopicalClusters?: string[];
     contentGaps?: string[];
+    insightClusters?: string[];
     mainConcepts?: string[];
     topicsToDevelop?: string[];
     conceptualGateways?: string[];

package/dist/types/index.d.ts.map

@@ -1 +1 @@
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package/dist/utils/transformers.d.ts

@@ -1,5 +1,12 @@
 import { DegreeDistribution, GraphResponse, SearchResponse, KnowledgeGraphOutput, GapsOutput, GraphOverview, GraphRagOutput, TopicsOutput, InsightsOutput, ResearchQuestionsOutput, ResearchIdeasOutput, ResponsesOutput, OptimizeTextOutput, SearchOutput, FetchOutput, StatementsSearchOutput, KeywordsOutput, TopicNamesOutput, SummaryOutput, StatementStringsOutput, LatentConceptsOutput, LatentTopicsOutput } from "../types/index.js";
 export declare function trimDegreeDistribution(distribution: DegreeDistribution, fullGraph?: boolean): DegreeDistribution;
+/**
+ * The graph's insight clusters as the API describes them: one line per gap
+ * depth, each naming the 1–3 clusters the AI bridges by default and their role
+ * (gap / bridge / influence). Undefined when the API sent none (an older
+ * server, or a graph with fewer than two clusters).
+ */
+export declare function insightClustersOf(data: GraphResponse): string[] | undefined;
 export declare function transformToStructuredOutput(data: GraphResponse, includeGraph?: boolean, includeNodesAndEdges?: boolean, buildingEntitiesGraph?: boolean, fullGraph?: boolean): KnowledgeGraphOutput;
 export declare function transformToGraphRagOutput(params: {
     data: GraphResponse;

package/dist/utils/transformers.d.ts.map

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package/dist/utils/transformers.js

@@ -12,6 +12,16 @@ export function trimDegreeDistribution(distribution, fullGraph = false) {
         histogramTruncated: true,
     };
 }
+/**
+ * The graph's insight clusters as the API describes them: one line per gap
+ * depth, each naming the 1–3 clusters the AI bridges by default and their role
+ * (gap / bridge / influence). Undefined when the API sent none (an older
+ * server, or a graph with fewer than two clusters).
+ */
+export function insightClustersOf(data) {
+    const lines = data.extendedGraphSummary?.insightClusters;
+    return Array.isArray(lines) && lines.length > 0 ? lines : undefined;
+}
 export function transformToStructuredOutput(data, includeGraph = false, includeNodesAndEdges = false, buildingEntitiesGraph = false, fullGraph = false) {
     const output = {
         statistics: {
@@ -25,6 +35,9 @@ export function transformToStructuredOutput(data, includeGraph = false, includeN
     }
     if (data.extendedGraphSummary) {
         output.contentGaps = data.extendedGraphSummary.contentGaps;
+        const insightClusters = insightClustersOf(data);
+        if (insightClusters)
+            output.insightClusters = insightClusters;
         output.mainTopicalClusters = data.extendedGraphSummary.mainTopics;
         output.mainConcepts = data.extendedGraphSummary.mainConcepts;
         output.conceptualGateways = data.extendedGraphSummary.conceptualGateways;
@@ -121,6 +134,9 @@ export function transformToGraphRagOutput(params) {
     }
     if (data.extendedGraphSummary && extendedGraphSummary == true) {
         output.contentGaps = data.extendedGraphSummary.contentGaps;
+        const insightClusters = insightClustersOf(data);
+        if (insightClusters)
+            output.insightClusters = insightClusters;
         output.mainTopicalClusters = data.extendedGraphSummary.mainTopics;
         output.mainConcepts = data.extendedGraphSummary.mainConcepts;
         output.conceptualGateways = data.extendedGraphSummary.conceptualGateways;
@@ -147,6 +163,9 @@ export function generateGaps(data) {
     if (data.extendedGraphSummary?.contentGaps) {
         gaps.contentGaps = data.extendedGraphSummary.contentGaps;
     }
+    const insightClusters = insightClustersOf(data);
+    if (insightClusters)
+        gaps.insightClusters = insightClusters;
     return gaps;
 }
 export function generateContextualHint(data) {
@@ -215,9 +234,11 @@ export function extractInsightsFromExtendedGraphSummary(data) {
     const mainConcepts = data.extendedGraphSummary?.mainConcepts || [];
     const topKeywordCombinations = data.extendedGraphSummary?.topBigrams || [];
     const conceptsToDevelop = data.extendedGraphSummary?.conceptualGateways || [];
+    const insightClusters = insightClustersOf(data);
     return {
         mainTopics,
         contentGaps,
+        ...(insightClusters ? { insightClusters } : {}),
         mainConcepts,
         topKeywordCombinations,
         conceptsToDevelop,
@@ -274,6 +295,9 @@ export function generateResearchQuestions(data) {
     if (data.graphSummary) {
         researchQuestions.graphSummary = data.graphSummary;
     }
+    const insightClusters = insightClustersOf(data);
+    if (insightClusters)
+        researchQuestions.insightClusters = insightClusters;
     return researchQuestions;
 }
 export function generateResearchIdeas(data) {
@@ -287,6 +311,9 @@ export function generateResearchIdeas(data) {
     if (data.graphSummary) {
         researchIdeas.graphSummary = data.graphSummary;
     }
+    const insightClusters = insightClustersOf(data);
+    if (insightClusters)
+        researchIdeas.insightClusters = insightClusters;
     return researchIdeas;
 }
 export function generateResponses(data) {
@@ -300,6 +327,9 @@ export function generateResponses(data) {
     if (data.graphSummary) {
         responses.graphSummary = data.graphSummary;
     }
+    const insightClusters = insightClustersOf(data);
+    if (insightClusters)
+        responses.insightClusters = insightClusters;
     return responses;
 }
 export function generateOptimizationResult(data) {
@@ -324,6 +354,8 @@ export function generateOptimizationResult(data) {
             output.mainTopicalClusters = ext.mainTopics;
         if (ext.contentGaps)
             output.contentGaps = ext.contentGaps;
+        if (ext.insightClusters?.length)
+            output.insightClusters = ext.insightClusters;
         if (ext.mainConcepts)
             output.mainConcepts = ext.mainConcepts;
         if (ext.topicsToDevelop)