keywordgraph-mcp-server 1.7.4 → 1.8.5

package/dist/tools/getProjectLearnings.js

@@ -0,0 +1,151 @@
+import { brand } from "../config/brand.js";
+import { GetProjectLearningsSchema } from "../schemas/index.js";
+import { makeInfraNodusRequest } from "../api/client.js";
+import { GRAPH_PREFIX, checkEnabled, fetchLearningsGraph, isMarkerStatement, learningsGraphName, newestFirst, toStoredLearning, } from "../utils/learnings.js";
+function textResult(payload, isError = false) {
+    return {
+        content: [
+            { type: "text", text: JSON.stringify(payload, null, 2) },
+        ],
+        ...(isError ? { isError: true } : {}),
+    };
+}
+function toLearnings(statements, limit, type) {
+    return newestFirst(statements
+        .filter((statement) => !isMarkerStatement(statement))
+        .map(toStoredLearning)
+        .filter((item) => item !== null)
+        .filter((item) => !type || item.types.includes(type))).slice(0, limit);
+}
+export const getProjectLearningsTool = {
+    name: "get_project_learnings",
+    definition: {
+        title: `Get Project Learnings from ${brand.name}`,
+        description: `Retrieve what previous sessions learned about operating in a project (saved with add_project_learnings). ` +
+            `Call it at the start of a substantive task with the task as \`prompt\` to get the most relevant learnings plus an overview of what is known; with \`entity\` (a file path, module, or concept) before working on an unfamiliar area; with neither for a structural overview; or with no \`project\` to list the projects that have learnings in this account. ` +
+            `Returns enabled: false with an empty list when the project has no learnings graph — that is not an error, just carry on; do not suggest enabling unless the user asks about memory.`,
+        inputSchema: GetProjectLearningsSchema.shape,
+        annotations: {
+            readOnlyHint: true,
+            idempotentHint: true,
+            destructiveHint: false,
+            openWorldHint: false,
+        },
+    },
+    handler: async (params) => {
+        try {
+            // No project → list the learnings graphs in the account.
+            if (!params.project) {
+                const response = (await makeInfraNodusRequest("/listGraphs", {
+                    query: GRAPH_PREFIX,
+                }));
+                const graphs = Array.isArray(response)
+                    ? response
+                        .filter((graph) => graph.contextName?.startsWith(GRAPH_PREFIX))
+                        .map((graph) => ({
+                        graphName: graph.contextName,
+                        project: graph.contextName?.slice(GRAPH_PREFIX.length),
+                        createdAt: graph.createdAt,
+                        ...(graph.defaultRevisionUrl ? { url: graph.defaultRevisionUrl } : {}),
+                    }))
+                    : [];
+                return textResult({
+                    projects: graphs,
+                    message: graphs.length === 0
+                        ? "No project learnings graphs in this account."
+                        : "Use the matching project name (not the graphName) in add_project_learnings / get_project_learnings.",
+                });
+            }
+            const graphName = learningsGraphName(params.project);
+            const state = await checkEnabled(graphName);
+            if (!state.enabled) {
+                return textResult({
+                    enabled: false,
+                    project: params.project,
+                    graphName,
+                    learnings: [],
+                });
+            }
+            // Entity lookup → every learning mentioning it.
+            if (params.entity) {
+                const response = await makeInfraNodusRequest("/search", {
+                    query: params.entity,
+                    contextNames: graphName,
+                });
+                if (response.error)
+                    throw new Error(response.error);
+                const texts = response
+                    .entriesAdded?.texts ?? [];
+                return textResult({
+                    enabled: true,
+                    project: params.project,
+                    graphName,
+                    entity: params.entity,
+                    learnings: texts.slice(0, params.limit).map((content) => ({ content })),
+                });
+            }
+            // Prompt → GraphRAG retrieval with a structural overview.
+            if (params.prompt) {
+                const queryParams = new URLSearchParams({
+                    doNotSave: "true",
+                    addStats: "true",
+                    includeGraph: "false",
+                    includeStatements: "true",
+                    includeGraphSummary: "true",
+                    extendedGraphSummary: "true",
+                });
+                const response = await makeInfraNodusRequest(`/graphAndAdvice?${queryParams.toString()}`, {
+                    name: graphName,
+                    aiTopics: "true",
+                    requestMode: "search",
+                    prompt: params.prompt,
+                    modelToUse: "gpt-4o-mini",
+                });
+                if (response.error)
+                    throw new Error(response.error);
+                const ranked = (response.statements ?? [])
+                    .filter((statement) => !isMarkerStatement(statement))
+                    .filter((statement) => !params.type ||
+                    (statement.categories ?? []).includes(`type-${params.type}`))
+                    .sort((a, b) => (b.similarityScore ?? 0) - (a.similarityScore ?? 0))
+                    .slice(0, params.limit)
+                    .map((statement) => ({
+                    ...toStoredLearning(statement),
+                    similarity: statement.similarityScore,
+                }));
+                return textResult({
+                    enabled: true,
+                    project: params.project,
+                    graphName,
+                    ...(response.graphSummary ? { overview: response.graphSummary } : {}),
+                    ...(response.extendedGraphSummary?.mainTopics
+                        ? { knownAreas: response.extendedGraphSummary.mainTopics }
+                        : {}),
+                    ...(response.extendedGraphSummary?.contentGaps
+                        ? { gaps: response.extendedGraphSummary.contentGaps }
+                        : {}),
+                    learnings: ranked,
+                });
+            }
+            // Neither → overview + newest learnings.
+            const { statements, response } = await fetchLearningsGraph(graphName);
+            const summary = response.extendedGraphSummary;
+            return textResult({
+                enabled: true,
+                project: params.project,
+                graphName,
+                ...(state.info.url ? { url: state.info.url } : {}),
+                total: statements.filter((s) => !isMarkerStatement(s)).length,
+                ...(params.type ? { type: params.type } : {}),
+                ...(summary?.mainTopics?.length ? { knownAreas: summary.mainTopics } : {}),
+                ...(summary?.mainConcepts?.length ? { mainConcepts: summary.mainConcepts } : {}),
+                ...(summary?.contentGaps?.length ? { gaps: summary.contentGaps } : {}),
+                learnings: toLearnings(statements, params.limit, params.type),
+            });
+        }
+        catch (error) {
+            return textResult({ error: error instanceof Error ? error.message : String(error) }, true);
+        }
+    },
+};
+//# sourceMappingURL=getProjectLearnings.js.map

package/dist/tools/getProjectLearnings.js.map

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package/dist/tools/index.d.ts

@@ -29,4 +29,12 @@ export { generateResearchIdeasTool } from "./generateResearchIdeas.js";
 export { optimizeTextStructureTool } from "./optimizeTextStructure.js";
 export { optimizeReasoningTool } from "./optimizeReasoning.js";
 export { retrieveContextForPromptFromGraphTool } from "./retrieveContextForPromptFromGraph.js";
+export { enableProjectLearningsTool } from "./enableProjectLearnings.js";
+export { addProjectLearningsTool } from "./addProjectLearnings.js";
+export { getProjectLearningsTool } from "./getProjectLearnings.js";
+export { submitWorkflowFeedbackTool } from "./submitWorkflowFeedback.js";
+export { optimizeKnowledgeBaseTool } from "./optimizeKnowledgeBase.js";
+export { deleteStatementsTool } from "./deleteStatements.js";
+export { updateStatementsTool } from "./updateStatements.js";
+export { deleteGraphTool } from "./deleteGraph.js";
 //# sourceMappingURL=index.d.ts.map

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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/tools/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AACzE,OAAO,EAAE,wBAAwB,EAAE,MAAM,2BAA2B,CAAC;AACrE,OAAO,EAAE,yBAAyB,EAAE,MAAM,4BAA4B,CAAC;AACvE,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAE,wBAAwB,EAAE,MAAM,2BAA2B,CAAC;AACrE,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,2BAA2B,EAAE,MAAM,8BAA8B,CAAC;AAC3E,OAAO,EAAE,6BAA6B,EAAE,MAAM,gCAAgC,CAAC;AAC/E,OAAO,EAAE,8BAA8B,EAAE,MAAM,wBAAwB,CAAC;AACxE,OAAO,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AACzE,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,wBAAwB,EAAE,MAAM,mBAAmB,CAAC;AAC7D,OAAO,EAAE,6BAA6B,EAAE,MAAM,wBAAwB,CAAC;AACvE,OAAO,EAAE,iCAAiC,EAAE,MAAM,oCAAoC,CAAC;AACvF,OAAO,EAAE,gCAAgC,EAAE,MAAM,mCAAmC,CAAC;AACrF,OAAO,EAAE,oCAAoC,EAAE,MAAM,uCAAuC,CAAC;AAC7F,OAAO,EAAE,oCAAoC,EAAE,MAAM,uCAAuC,CAAC;AAC7F,OAAO,EAAE,qCAAqC,EAAE,MAAM,wCAAwC,CAAC;AAC/F,OAAO,EAAE,oCAAoC,EAAE,MAAM,uCAAuC,CAAC;AAC7F,OAAO,EAAE,uCAAuC,EAAE,MAAM,0CAA0C,CAAC;AACnG,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAC;AACjE,OAAO,EAAE,4BAA4B,EAAE,MAAM,+BAA+B,CAAC;AAC7E,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,yBAAyB,EAAE,MAAM,4BAA4B,CAAC;AACvE,OAAO,EAAE,yBAAyB,EAAE,MAAM,4BAA4B,CAAC;AACvE,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,qCAAqC,EAAE,MAAM,wCAAwC,CAAC;AAC/F,OAAO,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AACzE,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AACzE,OAAO,EAAE,yBAAyB,EAAE,MAAM,4BAA4B,CAAC;AACvE,OAAO,EAAE,oBAAoB,EAAE,MAAM,uBAAuB,CAAC;AAC7D,OAAO,EAAE,oBAAoB,EAAE,MAAM,uBAAuB,CAAC;AAC7D,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC"}

package/dist/tools/index.js

@@ -29,4 +29,12 @@ export { generateResearchIdeasTool } from "./generateResearchIdeas.js";
 export { optimizeTextStructureTool } from "./optimizeTextStructure.js";
 export { optimizeReasoningTool } from "./optimizeReasoning.js";
 export { retrieveContextForPromptFromGraphTool } from "./retrieveContextForPromptFromGraph.js";
+export { enableProjectLearningsTool } from "./enableProjectLearnings.js";
+export { addProjectLearningsTool } from "./addProjectLearnings.js";
+export { getProjectLearningsTool } from "./getProjectLearnings.js";
+export { submitWorkflowFeedbackTool } from "./submitWorkflowFeedback.js";
+export { optimizeKnowledgeBaseTool } from "./optimizeKnowledgeBase.js";
+export { deleteStatementsTool } from "./deleteStatements.js";
+export { updateStatementsTool } from "./updateStatements.js";
+export { deleteGraphTool } from "./deleteGraph.js";
 //# sourceMappingURL=index.js.map

package/dist/tools/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/tools/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AACzE,OAAO,EAAE,wBAAwB,EAAE,MAAM,2BAA2B,CAAC;AACrE,OAAO,EAAE,yBAAyB,EAAE,MAAM,4BAA4B,CAAC;AACvE,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAE,wBAAwB,EAAE,MAAM,2BAA2B,CAAC;AACrE,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,2BAA2B,EAAE,MAAM,8BAA8B,CAAC;AAC3E,OAAO,EAAE,6BAA6B,EAAE,MAAM,gCAAgC,CAAC;AAC/E,OAAO,EAAE,8BAA8B,EAAE,MAAM,wBAAwB,CAAC;AACxE,OAAO,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AACzE,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,wBAAwB,EAAE,MAAM,mBAAmB,CAAC;AAC7D,OAAO,EAAE,6BAA6B,EAAE,MAAM,wBAAwB,CAAC;AACvE,OAAO,EAAE,iCAAiC,EAAE,MAAM,oCAAoC,CAAC;AACvF,OAAO,EAAE,gCAAgC,EAAE,MAAM,mCAAmC,CAAC;AACrF,OAAO,EAAE,oCAAoC,EAAE,MAAM,uCAAuC,CAAC;AAC7F,OAAO,EAAE,oCAAoC,EAAE,MAAM,uCAAuC,CAAC;AAC7F,OAAO,EAAE,qCAAqC,EAAE,MAAM,wCAAwC,CAAC;AAC/F,OAAO,EAAE,oCAAoC,EAAE,MAAM,uCAAuC,CAAC;AAC7F,OAAO,EAAE,uCAAuC,EAAE,MAAM,0CAA0C,CAAC;AACnG,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAC;AACjE,OAAO,EAAE,4BAA4B,EAAE,MAAM,+BAA+B,CAAC;AAC7E,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,yBAAyB,EAAE,MAAM,4BAA4B,CAAC;AACvE,OAAO,EAAE,yBAAyB,EAAE,MAAM,4BAA4B,CAAC;AACvE,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,qCAAqC,EAAE,MAAM,wCAAwC,CAAC;AAC/F,OAAO,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AACzE,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AACzE,OAAO,EAAE,yBAAyB,EAAE,MAAM,4BAA4B,CAAC;AACvE,OAAO,EAAE,oBAAoB,EAAE,MAAM,uBAAuB,CAAC;AAC7D,OAAO,EAAE,oBAAoB,EAAE,MAAM,uBAAuB,CAAC;AAC7D,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC"}

package/dist/tools/optimizeKnowledgeBase.d.ts

@@ -0,0 +1,41 @@
+import { z } from "zod";
+import { OptimizeKnowledgeBaseSchema } from "../schemas/index.js";
+import type { ToolHandlerContext } from "../types/index.js";
+export declare const optimizeKnowledgeBaseTool: {
+    name: string;
+    definition: {
+        title: string;
+        description: string;
+        inputSchema: {
+            graphName: z.ZodOptional<z.ZodString>;
+            statements: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
+            categories: z.ZodOptional<z.ZodArray<z.ZodArray<z.ZodString, "many">, "many">>;
+            categoriesAsNodes: z.ZodDefault<z.ZodBoolean>;
+            text: z.ZodOptional<z.ZodString>;
+            saveAs: z.ZodOptional<z.ZodString>;
+            focus: z.ZodDefault<z.ZodEnum<["general", "codebase", "vault", "procedural"]>>;
+            compareWith: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
+            includeLatent: z.ZodDefault<z.ZodBoolean>;
+            modelToUse: z.ZodDefault<z.ZodEnum<["claude-opus-5", "claude-sonnet-5", "claude-fable-5", "gemini-2.5-pro", "gemini-2.5-flash", "gemini-2.5-flash-lite", "grok-4.1-fast-non-reasoning", "grok-4.1-fast-reasoning", "gpt-4o", "gpt-4o-mini", "gpt-5.4", "gpt-5.4-mini", "gpt-5.6-terra", "gpt-5.6-sol"]>>;
+        };
+        annotations: {
+            readOnlyHint: boolean;
+            idempotentHint: boolean;
+            destructiveHint: boolean;
+            openWorldHint: boolean;
+        };
+    };
+    handler: (params: z.infer<typeof OptimizeKnowledgeBaseSchema>, context?: ToolHandlerContext) => Promise<{
+        content: {
+            type: "text";
+            text: string;
+        }[];
+        isError: boolean;
+    } | {
+        content: {
+            type: "text";
+            text: string;
+        }[];
+    }>;
+};
+//# sourceMappingURL=optimizeKnowledgeBase.d.ts.map

package/dist/tools/optimizeKnowledgeBase.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"optimizeKnowledgeBase.d.ts","sourceRoot":"","sources":["../../src/tools/optimizeKnowledgeBase.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EAAE,2BAA2B,EAAE,MAAM,qBAAqB,CAAC;AAclE,OAAO,KAAK,EAAiB,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AAgE3E,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;sBAoB5B,CAAC,CAAC,KAAK,CAAC,OAAO,2BAA2B,CAAC,YACzC,kBAAkB;;;;;;;;;;;;CAgL7B,CAAC"}

package/dist/tools/optimizeKnowledgeBase.js

@@ -0,0 +1,230 @@
+import { brand } from "../config/brand.js";
+import { OptimizeKnowledgeBaseSchema } from "../schemas/index.js";
+import { makeInfraNodusRequest } from "../api/client.js";
+import { resolveGraphInput } from "../utils/graphInput.js";
+import { generateOptimizationResult, extractLatentTopicsIdeas, transformToStructuredOutput, } from "../utils/transformers.js";
+import { dedupeList, normalizeState, readState, } from "../utils/knowledgeBase.js";
+import { ProgressReporter } from "../utils/progress.js";
+function errorContent(message) {
+    return {
+        content: [
+            { type: "text", text: JSON.stringify({ error: message }) },
+        ],
+        isError: true,
+    };
+}
+function errorText(error) {
+    if (typeof error === "string")
+        return error;
+    if (error && typeof error === "object") {
+        const message = error.message;
+        if (Array.isArray(message))
+            return message.join("; ");
+        if (typeof message === "string")
+            return message;
+        return JSON.stringify(error);
+    }
+    return String(error);
+}
+async function differenceTopics(first, second) {
+    const queryParams = new URLSearchParams({
+        doNotSave: "true",
+        addStats: "true",
+        includeStatements: "false",
+        includeGraphSummary: "false",
+        extendedGraphSummary: "true",
+        includeGraph: "false",
+        compactGraph: "true",
+        compactStatements: "true",
+        aiTopics: "true",
+        optimize: "develop",
+        compareMode: "difference",
+    });
+    const response = await makeInfraNodusRequest(`/graphsAndStatements?${queryParams.toString()}`, {
+        contexts: [{ graphName: first }, { graphName: second }],
+        aiTopics: "true",
+    });
+    if (response.error)
+        return { error: errorText(response.error) };
+    const structured = transformToStructuredOutput(response, false, false, false);
+    return {
+        topics: dedupeList(structured.mainTopicalClusters ?? [], 8),
+        concepts: dedupeList(structured.mainConcepts ?? [], 12),
+    };
+}
+export const optimizeKnowledgeBaseTool = {
+    name: "optimize_knowledge_base",
+    definition: {
+        title: `Optimize the Structure of a Knowledge Base, Code Base, or Rule Set`,
+        description: `Structural feedback on a whole body of knowledge — a code base, a document vault, or procedural knowledge (rules, frameworks, principles) — from its ${brand.name} graph. ` +
+            `Give it the graph built from the project (graphName: e.g. repo-<project>-digest or vault-<project>-digest — the LLM-written digest of how it works — repo-<project>-structure, repo-<project>-docs, vault-<project>-links, learn-<project>) and set focus to how the reading should be framed (codebase, vault, procedural, general). ` +
+            `No graph yet? If you can read the project's files, write the digest yourself and pass it as text with saveAs: read the docs, notes, code and config the user pointed you at, then write 100–300 one-line statements in your own words on how it works — principles (why), rules (must / must not), procedures (when X do Y then Z), hand-offs, main ideas, gaps — with [[wikilinks]] on the modules, concepts, tools and files, grouped under \`## [[Topic]]\` headings, no tags; saveAs: repo-<project>-digest (vault-<project>-digest for a notes vault). If you cannot read the files but the content is already a graph (docs, structure, notes), run generate_ontology_graph with ontologyMode 'procedural' and sourceGraphName first, saving to that digest name. ` +
+            `It diagnoses the structure (biased / focused / diversified / dispersed) and translates it: what dominates, which areas are under-developed, which clusters never connect (missing integrations, missing bridge notes, missing hand-offs between frameworks), with AI suggestions for what to develop next. ` +
+            `compareWith names other layers of the same project (e.g. digest vs structure, docs vs code) and reports what each layer has that the other lacks — rules without code, code without documentation, features claimed but not built. ` +
+            `Use it after the infranodus skill has ingested a repo or vault, or on any saved graph, when the user asks to optimize, review, or find what is missing or under-developed in a project, vault, or set of rules.`,
+        inputSchema: OptimizeKnowledgeBaseSchema.shape,
+        annotations: {
+            readOnlyHint: true,
+            idempotentHint: true,
+            destructiveHint: false,
+            openWorldHint: false,
+        },
+    },
+    handler: async (params, context) => {
+        try {
+            const focus = params.focus ?? "general";
+            const modelToUse = params.modelToUse ?? "gpt-5.4";
+            const includeLatent = params.includeLatent !== false;
+            const compareWith = dedupeList(params.compareWith ?? [], 2);
+            const steps = 1 + (includeLatent ? 1 : 0) + compareWith.length * 2;
+            const progress = new ProgressReporter(context ?? {}, steps);
+            let step = 0;
+            // Primary source: an existing graph, or statements/text resolved the
+            // same way optimize_text_structure does.
+            let sourceBody;
+            let sourceLabel;
+            if (params.graphName?.trim()) {
+                sourceBody = { name: params.graphName.trim() };
+                sourceLabel = params.graphName.trim();
+            }
+            else if (params.saveAs?.trim()) {
+                // Save the submitted digest as a graph first (heading lines become
+                // parents, as the skill's upload does), then analyse the saved graph
+                // so compareWith and later questions work on it.
+                const saveAs = params.saveAs.trim();
+                const input = await resolveGraphInput({
+                    ...params,
+                    wikilinksMode: "parentAndConcepts",
+                });
+                if (!input.ok)
+                    return errorContent(input.error);
+                const saveQuery = new URLSearchParams({
+                    doNotSave: "false",
+                    addStats: "false",
+                    includeStatements: "false",
+                    includeGraphSummary: "false",
+                    extendedGraphSummary: "false",
+                    includeGraph: "false",
+                    compactGraph: "true",
+                    aiTopics: "false",
+                });
+                const saved = await makeInfraNodusRequest(`/graphAndStatements?${saveQuery.toString()}`, { name: saveAs, aiTopics: "false", ...input.payload });
+                if (saved.error)
+                    return errorContent(errorText(saved.error));
+                sourceBody = { name: saveAs };
+                sourceLabel = saveAs;
+            }
+            else {
+                const input = await resolveGraphInput(params);
+                if (!input.ok)
+                    return errorContent(input.error);
+                sourceBody = { ...input.payload };
+                sourceLabel = "submitted statements";
+            }
+            const primaryGraph = params.graphName?.trim() || params.saveAs?.trim();
+            if (compareWith.length > 0 && !primaryGraph) {
+                return errorContent("compareWith needs the primary source to be a saved graph (graphName, or statements/text with saveAs) so the layers can be compared on the server.");
+            }
+            // 1. Structure diagnosis + development suggestions.
+            await progress.report(step++, "Diagnosing structure");
+            const developQuery = new URLSearchParams({
+                doNotSave: "true",
+                addStats: "true",
+                includeStatements: "false",
+                includeGraphSummary: "false",
+                extendedGraphSummary: "true",
+                includeGraph: "true",
+                compactGraph: "true",
+                aiTopics: "true",
+                optimize: "develop",
+            });
+            const develop = await makeInfraNodusRequest(`/graphAndAdvice?${developQuery.toString()}`, {
+                ...sourceBody,
+                aiTopics: "true",
+                requestMode: "response",
+                modelToUse,
+            });
+            if (develop.error)
+                return errorContent(errorText(develop.error));
+            const optimization = generateOptimizationResult(develop);
+            const stateRaw = develop.extendedGraphSummary?.diversityStatistics?.diversity_score ??
+                develop.graph?.graphologyGraph?.attributes?.diversity_stats
+                    ?.diversity_score;
+            const state = normalizeState(stateRaw);
+            // 2. Under-developed (latent) topics.
+            let latentIdeas = [];
+            let latentTopics = [];
+            if (includeLatent) {
+                await progress.report(step++, "Finding under-developed areas");
+                const latentQuery = new URLSearchParams({
+                    doNotSave: "true",
+                    addStats: "true",
+                    includeStatements: "false",
+                    includeGraphSummary: "false",
+                    extendedGraphSummary: "true",
+                    includeGraph: "false",
+                    aiTopics: "true",
+                    optimize: "latent",
+                });
+                const latent = await makeInfraNodusRequest(`/graphAndAdvice?${latentQuery.toString()}`, {
+                    ...sourceBody,
+                    aiTopics: "true",
+                    requestMode: "transcend",
+                    modelToUse,
+                });
+                if (!latent.error) {
+                    const extracted = extractLatentTopicsIdeas(latent);
+                    latentIdeas = dedupeList(extracted.ideas ?? [], 6);
+                    latentTopics = dedupeList(extracted.latentTopicsToDevelop ?? [], 8);
+                }
+            }
+            // 3. Layer comparisons, both directions.
+            const comparisons = [];
+            const primary = primaryGraph;
+            for (const other of compareWith) {
+                await progress.report(step++, `Comparing with ${other}`);
+                const missingFromPrimary = await differenceTopics(primary, other);
+                await progress.report(step++, `Comparing ${other} back`);
+                const missingFromOther = await differenceTopics(other, primary);
+                comparisons.push({
+                    against: other,
+                    missingFromPrimary: "error" in missingFromPrimary ? [] : missingFromPrimary.topics,
+                    missingFromOther: "error" in missingFromOther ? [] : missingFromOther.topics,
+                    note: "error" in missingFromPrimary || "error" in missingFromOther
+                        ? `comparison failed: ${("error" in missingFromPrimary && missingFromPrimary.error) ||
+                            ("error" in missingFromOther && missingFromOther.error)}`
+                        : `missingFromPrimary = what ${other} covers that ${primary} does not; missingFromOther = what ${primary} covers that ${other} does not.`,
+                });
+            }
+            await progress.report(steps, "Done");
+            const reading = state ? readState(focus, state) : undefined;
+            const mainClusters = dedupeList(optimization.mainTopicalClusters ?? [], 10);
+            const report = {
+                source: sourceLabel,
+                focus,
+                state: state ?? "unknown",
+                ...(reading ? { meaning: reading.meaning, action: reading.action } : {}),
+                dominant: mainClusters[0],
+                mainClusters,
+                underdeveloped: dedupeList([...(optimization.topicsToDevelop ?? []), ...latentTopics], 10),
+                missingBridges: dedupeList(optimization.contentGaps ?? [], 8),
+                gateways: dedupeList(optimization.conceptualGateways ?? [], 8),
+                suggestions: dedupeList(optimization.suggestions ?? [], 6),
+                ...(latentIdeas.length ? { latentIdeas } : {}),
+                ...(comparisons.length ? { comparisons } : {}),
+                ...(optimization.diversity_stats
+                    ? { statistics: optimization.diversity_stats }
+                    : {}),
+            };
+            return {
+                content: [
+                    { type: "text", text: JSON.stringify(report, null, 2) },
+                ],
+            };
+        }
+        catch (error) {
+            return errorContent(error instanceof Error ? error.message : String(error));
+        }
+    },
+};
+//# sourceMappingURL=optimizeKnowledgeBase.js.map

package/dist/tools/optimizeKnowledgeBase.js.map

@@ -0,0 +1 @@
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package/dist/tools/optimizeReasoning.d.ts

@@ -9,8 +9,9 @@ export declare const optimizeReasoningTool: {
             text: z.ZodOptional<z.ZodString>;
             statements: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
             categories: z.ZodOptional<z.ZodArray<z.ZodArray<z.ZodString, "many">, "many">>;
+            categoriesAsNodes: z.ZodDefault<z.ZodBoolean>;
             timestamps: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
-            modelToUse: z.ZodDefault<z.ZodEnum<["claude-opus-4.6", "claude-sonnet-4.6", "gemini-2.5-pro", "gemini-2.5-flash", "gemini-2.5-flash-lite", "grok-4.1-fast-non-reasoning", "grok-4.1-fast-reasoning", "gpt-4o", "gpt-4o-mini", "gpt-5.4", "gpt-5.4-mini"]>>;
+            modelToUse: z.ZodDefault<z.ZodEnum<["claude-opus-5", "claude-sonnet-5", "claude-fable-5", "gemini-2.5-pro", "gemini-2.5-flash", "gemini-2.5-flash-lite", "grok-4.1-fast-non-reasoning", "grok-4.1-fast-reasoning", "gpt-4o", "gpt-4o-mini", "gpt-5.4", "gpt-5.4-mini", "gpt-5.6-terra", "gpt-5.6-sol"]>>;
         };
         annotations: {
             readOnlyHint: boolean;

package/dist/tools/optimizeReasoning.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"optimizeReasoning.d.ts","sourceRoot":"","sources":["../../src/tools/optimizeReasoning.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EACN,uBAAuB,EAEvB,MAAM,qBAAqB,CAAC;AAc7B,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;sBAaT,CAAC,CAAC,KAAK,CAAC,OAAO,uBAAuB,CAAC;;;;;;;;;;;;CA+D/D,CAAC"}

package/dist/tools/optimizeTextStructure.d.ts

@@ -10,10 +10,11 @@ export declare const optimizeTextStructureTool: {
             url: z.ZodOptional<z.ZodString>;
             statements: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
             categories: z.ZodOptional<z.ZodArray<z.ZodArray<z.ZodString, "many">, "many">>;
+            categoriesAsNodes: z.ZodDefault<z.ZodBoolean>;
             timestamps: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
             graphName: z.ZodOptional<z.ZodString>;
             responseType: z.ZodDefault<z.ZodEnum<["response", "idea", "question", "transcend"]>>;
-            modelToUse: z.ZodDefault<z.ZodEnum<["claude-opus-4.6", "claude-sonnet-4.6", "gemini-2.5-pro", "gemini-2.5-flash", "gemini-2.5-flash-lite", "grok-4.1-fast-non-reasoning", "grok-4.1-fast-reasoning", "gpt-4o", "gpt-4o-mini", "gpt-5.4", "gpt-5.4-mini"]>>;
+            modelToUse: z.ZodDefault<z.ZodEnum<["claude-opus-5", "claude-sonnet-5", "claude-fable-5", "gemini-2.5-pro", "gemini-2.5-flash", "gemini-2.5-flash-lite", "grok-4.1-fast-non-reasoning", "grok-4.1-fast-reasoning", "gpt-4o", "gpt-4o-mini", "gpt-5.4", "gpt-5.4-mini", "gpt-5.6-terra", "gpt-5.6-sol"]>>;
         };
         annotations: {
             readOnlyHint: boolean;

package/dist/tools/optimizeTextStructure.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"optimizeTextStructure.d.ts","sourceRoot":"","sources":["../../src/tools/optimizeTextStructure.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EACN,2BAA2B,EAE3B,MAAM,qBAAqB,CAAC;AAc7B,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;sBAab,CAAC,CAAC,KAAK,CAAC,OAAO,2BAA2B,CAAC;;;;;;;;;;;;CAoFnE,CAAC"}

package/dist/tools/submitWorkflowFeedback.d.ts

@@ -0,0 +1,35 @@
+import { z } from "zod";
+import { SubmitWorkflowFeedbackSchema } from "../schemas/index.js";
+import type { ToolExtra } from "../types/index.js";
+export declare const submitWorkflowFeedbackTool: {
+    name: string;
+    definition: {
+        title: string;
+        description: string;
+        inputSchema: {
+            workflow: z.ZodString;
+            toolsUsed: z.ZodArray<z.ZodString, "many">;
+            consumption: z.ZodEnum<["none", "some", "most"]>;
+            usedExample: z.ZodOptional<z.ZodString>;
+            novelty: z.ZodEnum<["nothing_new", "some_new", "mostly_new"]>;
+            taskFit: z.ZodEnum<["right_tool", "needed_another", "wrong_tool"]>;
+            callsNeeded: z.ZodNumber;
+            defects: z.ZodDefault<z.ZodArray<z.ZodEnum<["too_generic", "off_topic", "wrong_language", "truncated", "duplicates", "too_long_to_read", "error", "empty"]>, "many">>;
+            userNext: z.ZodDefault<z.ZodEnum<["built_on_it", "asked_followup", "ignored", "redirected", "unknown"]>>;
+            reason: z.ZodString;
+        };
+        annotations: {
+            readOnlyHint: boolean;
+            idempotentHint: boolean;
+            destructiveHint: boolean;
+            openWorldHint: boolean;
+        };
+    };
+    handler: (params: z.infer<typeof SubmitWorkflowFeedbackSchema>, extra?: ToolExtra) => Promise<{
+        content: {
+            type: "text";
+            text: string;
+        }[];
+    }>;
+};
+//# sourceMappingURL=submitWorkflowFeedback.d.ts.map

package/dist/tools/submitWorkflowFeedback.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"submitWorkflowFeedback.d.ts","sourceRoot":"","sources":["../../src/tools/submitWorkflowFeedback.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EAAE,4BAA4B,EAAE,MAAM,qBAAqB,CAAC;AAInE,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,mBAAmB,CAAC;AAInD,eAAO,MAAM,0BAA0B;;;;;;;;;;;;;;;;;;;;;;;;sBAoB7B,CAAC,CAAC,KAAK,CAAC,OAAO,4BAA4B,CAAC,UAC5C,SAAS;;;;;;CAgDlB,CAAC"}