ketcher-react 3.12.0-rc.1 → 3.12.0

package/dist/cjs/script/editor/Editor.d.ts

@@ -13,7 +13,7 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  ***************************************************************************/
-import { Action, Atom, AtomLabel, AttachmentPointName, Editor as KetcherEditor, FloatingToolsParams, IKetMonomerTemplate, MonomerCreationState, MULTITAIL_ARROW_KEY, Render, Struct, KetMonomerClass, RnaPresetComponentKey } from 'ketcher-core';
+import { Action, Atom, AtomLabel, AttachmentPointName, Editor as KetcherEditor, FloatingToolsParams, IKetMonomerTemplate, MonomerCreationState, MULTITAIL_ARROW_KEY, Render, Struct, Vec2, KetMonomerClass, RnaPresetComponentKey } from 'ketcher-core';
 import { PipelineSubscription, Subscription } from 'subscription';
 import { Highlighter } from './highlighter';
 import { ContextMenuInfo } from '../ui/views/components/ContextMenu/contextMenu.types';
@@ -117,7 +117,7 @@ declare class Editor implements KetcherEditor {
     assignConnectionPointAtom(atomId: number, attachmentPointName?: AttachmentPointName, assignedAttachmentPointsByMonomer?: Map<AttachmentPointName, [
         number,
         number
-    ]>, monomerStructure?: Selection, forceAddNewLeavingGroupAtom?: boolean, leavingAtomLabel?: AtomLabel): void;
+    ]>, monomerStructure?: Selection, forceAddNewLeavingGroupAtom?: boolean, leavingAtomLabel?: AtomLabel, leavingAtomPosition?: Vec2): void;
     closeMonomerCreationWizard(restoreOriginalStruct?: boolean): void;
     saveNewMonomer(data: any): {
         monomer: import("ketcher-core").Chem | import("ketcher-core").Sugar | import("ketcher-core").Peptide | import("ketcher-core").RNABase | import("ketcher-core").Phosphate;

package/dist/index.js

@@ -8473,7 +8473,7 @@ var zoom = {
 
 var openHelpLink = function openHelpLink() {
   var _window$open;
-  return (_window$open = window.open("https://github.com/epam/ketcher/blob/".concat("v3.12.0-rc.1\n", "/documentation/help.md#ketcher-overview"))) === null || _window$open === void 0 ? void 0 : _window$open.focus();
+  return (_window$open = window.open("https://github.com/epam/ketcher/blob/".concat("v3.12.0\n", "/documentation/help.md#ketcher-overview"))) === null || _window$open === void 0 ? void 0 : _window$open.focus();
 };
 var help = {
   help: {
@@ -26235,6 +26235,7 @@ var Editor$3 = function () {
       var _this2 = this;
       var forceAddNewLeavingGroupAtom = arguments.length > 4 && arguments[4] !== undefined ? arguments[4] : false;
       var leavingAtomLabel = arguments.length > 5 && arguments[5] !== undefined ? arguments[5] : AtomLabel.H;
+      var leavingAtomPosition = arguments.length > 6 ? arguments[6] : undefined;
       assert_1(this.monomerCreationState);
       var potentialLeavingAtoms = this.monomerCreationState.potentialAttachmentPoints.get(atomId);
       var leavingAtomId;
@@ -26264,7 +26265,7 @@ var Editor$3 = function () {
             stereo: Bond$2.PATTERN.STEREO.NONE
           }, atomId, {
             label: leavingAtomLabel
-          }),
+          }, undefined, leavingAtomPosition),
           _fromBondAddition2 = _slicedToArray$1(_fromBondAddition, 4),
           bondAdditionAction = _fromBondAddition2[0],
           endAtomId = _fromBondAddition2[2],
@@ -32425,14 +32426,18 @@ var MonomerCreationWizard = function MonomerCreationWizard() {
         });
         var bondBetweenSugarAndBase = _toConsumableArray(bondsBetweenSugarAndBase.values())[0];
         var bondBetweenSugarAndPhosphate = _toConsumableArray(bondsBetweenSugarAndPhosphate.values())[0];
-        var sugarR3AttachmentPointAtom = sugarStructure !== null && sugarStructure !== void 0 && (_sugarStructure$atoms5 = sugarStructure.atoms) !== null && _sugarStructure$atoms5 !== void 0 && _sugarStructure$atoms5.includes(bondBetweenSugarAndBase.begin) ? bondBetweenSugarAndBase.begin : bondBetweenSugarAndBase.end;
-        var sugarR2AttachmentPointAtom = sugarStructure !== null && sugarStructure !== void 0 && (_sugarStructure$atoms6 = sugarStructure.atoms) !== null && _sugarStructure$atoms6 !== void 0 && _sugarStructure$atoms6.includes(bondBetweenSugarAndPhosphate.begin) ? bondBetweenSugarAndPhosphate.begin : bondBetweenSugarAndPhosphate.end;
-        var baseR1AttachmentPointAtom = baseStructure !== null && baseStructure !== void 0 && (_baseStructure$atoms3 = baseStructure.atoms) !== null && _baseStructure$atoms3 !== void 0 && _baseStructure$atoms3.includes(bondBetweenSugarAndBase.begin) ? bondBetweenSugarAndBase.begin : bondBetweenSugarAndBase.end;
-        var phosphateR1AttachmentPointAtom = phosphateStructure !== null && phosphateStructure !== void 0 && (_phosphateStructure$a3 = phosphateStructure.atoms) !== null && _phosphateStructure$a3 !== void 0 && _phosphateStructure$a3.includes(bondBetweenSugarAndPhosphate.begin) ? bondBetweenSugarAndPhosphate.begin : bondBetweenSugarAndPhosphate.end;
-        editor.assignConnectionPointAtom(baseR1AttachmentPointAtom, AttachmentPointName.R1, assignedAttachmentPointsByMonomer.get(rnaPresetWizardState.base), rnaPresetWizardState.base.structure, true, getLeavingAtomForAttachmentPoint(KetMonomerClass.Base, AttachmentPointName.R1));
-        editor.assignConnectionPointAtom(sugarR2AttachmentPointAtom, AttachmentPointName.R2, assignedAttachmentPointsByMonomer.get(rnaPresetWizardState.sugar), rnaPresetWizardState.sugar.structure, true, getLeavingAtomForAttachmentPoint(KetMonomerClass.Sugar, AttachmentPointName.R2));
-        editor.assignConnectionPointAtom(sugarR3AttachmentPointAtom, AttachmentPointName.R3, assignedAttachmentPointsByMonomer.get(rnaPresetWizardState.sugar), rnaPresetWizardState.sugar.structure, true, getLeavingAtomForAttachmentPoint(KetMonomerClass.Sugar, AttachmentPointName.R3));
-        editor.assignConnectionPointAtom(phosphateR1AttachmentPointAtom, AttachmentPointName.R1, assignedAttachmentPointsByMonomer.get(rnaPresetWizardState.phosphate), rnaPresetWizardState.phosphate.structure, true, getLeavingAtomForAttachmentPoint(KetMonomerClass.Phosphate, AttachmentPointName.R1));
+        var sugarR3AttachmentPointAtomId = sugarStructure !== null && sugarStructure !== void 0 && (_sugarStructure$atoms5 = sugarStructure.atoms) !== null && _sugarStructure$atoms5 !== void 0 && _sugarStructure$atoms5.includes(bondBetweenSugarAndBase.begin) ? bondBetweenSugarAndBase.begin : bondBetweenSugarAndBase.end;
+        var sugarR3AttachmentAtom = struct.atoms.get(sugarR3AttachmentPointAtomId);
+        var sugarR2AttachmentPointAtomId = sugarStructure !== null && sugarStructure !== void 0 && (_sugarStructure$atoms6 = sugarStructure.atoms) !== null && _sugarStructure$atoms6 !== void 0 && _sugarStructure$atoms6.includes(bondBetweenSugarAndPhosphate.begin) ? bondBetweenSugarAndPhosphate.begin : bondBetweenSugarAndPhosphate.end;
+        var sugarR2AttachmentAtom = struct.atoms.get(sugarR2AttachmentPointAtomId);
+        var baseR1AttachmentPointAtomId = baseStructure !== null && baseStructure !== void 0 && (_baseStructure$atoms3 = baseStructure.atoms) !== null && _baseStructure$atoms3 !== void 0 && _baseStructure$atoms3.includes(bondBetweenSugarAndBase.begin) ? bondBetweenSugarAndBase.begin : bondBetweenSugarAndBase.end;
+        var baseR1AttachmentAtom = struct.atoms.get(baseR1AttachmentPointAtomId);
+        var phosphateR1AttachmentPointAtomId = phosphateStructure !== null && phosphateStructure !== void 0 && (_phosphateStructure$a3 = phosphateStructure.atoms) !== null && _phosphateStructure$a3 !== void 0 && _phosphateStructure$a3.includes(bondBetweenSugarAndPhosphate.begin) ? bondBetweenSugarAndPhosphate.begin : bondBetweenSugarAndPhosphate.end;
+        var phosphateR1AttachmentAtom = struct.atoms.get(phosphateR1AttachmentPointAtomId);
+        editor.assignConnectionPointAtom(baseR1AttachmentPointAtomId, AttachmentPointName.R1, assignedAttachmentPointsByMonomer.get(rnaPresetWizardState.base), rnaPresetWizardState.base.structure, true, getLeavingAtomForAttachmentPoint(KetMonomerClass.Base, AttachmentPointName.R1), sugarR3AttachmentAtom === null || sugarR3AttachmentAtom === void 0 ? void 0 : sugarR3AttachmentAtom.pp);
+        editor.assignConnectionPointAtom(sugarR2AttachmentPointAtomId, AttachmentPointName.R2, assignedAttachmentPointsByMonomer.get(rnaPresetWizardState.sugar), rnaPresetWizardState.sugar.structure, true, getLeavingAtomForAttachmentPoint(KetMonomerClass.Sugar, AttachmentPointName.R2), phosphateR1AttachmentAtom === null || phosphateR1AttachmentAtom === void 0 ? void 0 : phosphateR1AttachmentAtom.pp);
+        editor.assignConnectionPointAtom(sugarR3AttachmentPointAtomId, AttachmentPointName.R3, assignedAttachmentPointsByMonomer.get(rnaPresetWizardState.sugar), rnaPresetWizardState.sugar.structure, true, getLeavingAtomForAttachmentPoint(KetMonomerClass.Sugar, AttachmentPointName.R3), baseR1AttachmentAtom === null || baseR1AttachmentAtom === void 0 ? void 0 : baseR1AttachmentAtom.pp);
+        editor.assignConnectionPointAtom(phosphateR1AttachmentPointAtomId, AttachmentPointName.R1, assignedAttachmentPointsByMonomer.get(rnaPresetWizardState.phosphate), rnaPresetWizardState.phosphate.structure, true, getLeavingAtomForAttachmentPoint(KetMonomerClass.Phosphate, AttachmentPointName.R1), sugarR2AttachmentAtom === null || sugarR2AttachmentAtom === void 0 ? void 0 : sugarR2AttachmentAtom.pp);
       }
       monomersToSave.forEach(function (monomerToSave) {
         var atomIdMap = new Map();
@@ -40914,8 +40919,8 @@ var KetcherBuilder = function () {
                 cleanup = initApp(prevKetcherId, ketcherId, element, appRoot, staticResourcesUrl, {
                   buttons: buttons || {},
                   errorHandler: errorHandler || null,
-                  version: "3.12.0-rc.1" ,
-                  buildDate: "2026-01-08T17:45:33" ,
+                  version: "3.12.0" ,
+                  buildDate: "2026-03-04T11:10:15" ,
                   buildNumber: '',
                   customButtons: customButtons || []
                 }, structService, resolve, togglerComponent);
@@ -41216,7 +41221,7 @@ var ModeControl = function ModeControl(_ref3) {
 function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
 function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty$1(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
 var MacromoleculesEditorComponent = lazy(function () {
-  return import('./index.modern-521d26f9.js');
+  return import('./index.modern-b9db71c5.js');
 });
 var Editor = function Editor(props) {
   var _useState = useState(false),