jspsych 6.3.1 → 7.1.2

package/src/TimelineNode.ts

@@ -0,0 +1,536 @@
+import { JsPsych } from "./JsPsych";
+import {
+  repeat,
+  sampleWithReplacement,
+  sampleWithoutReplacement,
+  shuffle,
+  shuffleAlternateGroups,
+} from "./modules/randomization";
+import { deepCopy } from "./modules/utils";
+
+export class TimelineNode {
+  // a unique ID for this node, relative to the parent
+  relative_id;
+
+  // store the parent for this node
+  parent_node;
+
+  // parameters for the trial if the node contains a trial
+  trial_parameters;
+
+  // parameters for nodes that contain timelines
+  timeline_parameters;
+
+  // stores trial information on a node that contains a timeline
+  // used for adding new trials
+  node_trial_data;
+
+  // track progress through the node
+  progress = <any>{
+    current_location: -1, // where on the timeline (which timelinenode)
+    current_variable_set: 0, // which set of variables to use from timeline_variables
+    current_repetition: 0, // how many times through the variable set on this run of the node
+    current_iteration: 0, // how many times this node has been revisited
+    done: false,
+  };
+
+  end_message?: string;
+
+  // constructor
+  constructor(private jsPsych: JsPsych, parameters, parent?, relativeID?) {
+    // store a link to the parent of this node
+    this.parent_node = parent;
+
+    // create the ID for this node
+    this.relative_id = typeof parent === "undefined" ? 0 : relativeID;
+
+    // check if there is a timeline parameter
+    // if there is, then this node has its own timeline
+    if (typeof parameters.timeline !== "undefined") {
+      // create timeline properties
+      this.timeline_parameters = {
+        timeline: [],
+        loop_function: parameters.loop_function,
+        conditional_function: parameters.conditional_function,
+        sample: parameters.sample,
+        randomize_order:
+          typeof parameters.randomize_order == "undefined" ? false : parameters.randomize_order,
+        repetitions: typeof parameters.repetitions == "undefined" ? 1 : parameters.repetitions,
+        timeline_variables:
+          typeof parameters.timeline_variables == "undefined"
+            ? [{}]
+            : parameters.timeline_variables,
+        on_timeline_finish: parameters.on_timeline_finish,
+        on_timeline_start: parameters.on_timeline_start,
+      };
+
+      this.setTimelineVariablesOrder();
+
+      // extract all of the node level data and parameters
+      // but remove all of the timeline-level specific information
+      // since this will be used to copy things down hierarchically
+      var node_data = Object.assign({}, parameters);
+      delete node_data.timeline;
+      delete node_data.conditional_function;
+      delete node_data.loop_function;
+      delete node_data.randomize_order;
+      delete node_data.repetitions;
+      delete node_data.timeline_variables;
+      delete node_data.sample;
+      delete node_data.on_timeline_start;
+      delete node_data.on_timeline_finish;
+      this.node_trial_data = node_data; // store for later...
+
+      // create a TimelineNode for each element in the timeline
+      for (var i = 0; i < parameters.timeline.length; i++) {
+        // merge parameters
+        var merged_parameters = Object.assign({}, node_data, parameters.timeline[i]);
+        // merge any data from the parent node into child nodes
+        if (typeof node_data.data == "object" && typeof parameters.timeline[i].data == "object") {
+          var merged_data = Object.assign({}, node_data.data, parameters.timeline[i].data);
+          merged_parameters.data = merged_data;
+        }
+        this.timeline_parameters.timeline.push(
+          new TimelineNode(this.jsPsych, merged_parameters, this, i)
+        );
+      }
+    }
+    // if there is no timeline parameter, then this node is a trial node
+    else {
+      // check to see if a valid trial type is defined
+      if (typeof parameters.type === "undefined") {
+        console.error(
+          'Trial level node is missing the "type" parameter. The parameters for the node are: ' +
+            JSON.stringify(parameters)
+        );
+      }
+      // create a deep copy of the parameters for the trial
+      this.trial_parameters = { ...parameters };
+    }
+  }
+
+  // recursively get the next trial to run.
+  // if this node is a leaf (trial), then return the trial.
+  // otherwise, recursively find the next trial in the child timeline.
+  trial() {
+    if (typeof this.timeline_parameters == "undefined") {
+      // returns a clone of the trial_parameters to
+      // protect functions.
+      return deepCopy(this.trial_parameters);
+    } else {
+      if (this.progress.current_location >= this.timeline_parameters.timeline.length) {
+        return null;
+      } else {
+        return this.timeline_parameters.timeline[this.progress.current_location].trial();
+      }
+    }
+  }
+
+  markCurrentTrialComplete() {
+    if (typeof this.timeline_parameters === "undefined") {
+      this.progress.done = true;
+    } else {
+      this.timeline_parameters.timeline[this.progress.current_location].markCurrentTrialComplete();
+    }
+  }
+
+  nextRepetiton() {
+    this.setTimelineVariablesOrder();
+    this.progress.current_location = -1;
+    this.progress.current_variable_set = 0;
+    this.progress.current_repetition++;
+    for (var i = 0; i < this.timeline_parameters.timeline.length; i++) {
+      this.timeline_parameters.timeline[i].reset();
+    }
+  }
+
+  // set the order for going through the timeline variables array
+  setTimelineVariablesOrder() {
+    const timeline_parameters = this.timeline_parameters;
+
+    // check to make sure this node has variables
+    if (
+      typeof timeline_parameters === "undefined" ||
+      typeof timeline_parameters.timeline_variables === "undefined"
+    ) {
+      return;
+    }
+
+    var order = [];
+    for (var i = 0; i < timeline_parameters.timeline_variables.length; i++) {
+      order.push(i);
+    }
+
+    if (typeof timeline_parameters.sample !== "undefined") {
+      if (timeline_parameters.sample.type == "custom") {
+        order = timeline_parameters.sample.fn(order);
+      } else if (timeline_parameters.sample.type == "with-replacement") {
+        order = sampleWithReplacement(
+          order,
+          timeline_parameters.sample.size,
+          timeline_parameters.sample.weights
+        );
+      } else if (timeline_parameters.sample.type == "without-replacement") {
+        order = sampleWithoutReplacement(order, timeline_parameters.sample.size);
+      } else if (timeline_parameters.sample.type == "fixed-repetitions") {
+        order = repeat(order, timeline_parameters.sample.size, false);
+      } else if (timeline_parameters.sample.type == "alternate-groups") {
+        order = shuffleAlternateGroups(
+          timeline_parameters.sample.groups,
+          timeline_parameters.sample.randomize_group_order
+        );
+      } else {
+        console.error(
+          'Invalid type in timeline sample parameters. Valid options for type are "custom", "with-replacement", "without-replacement", "fixed-repetitions", and "alternate-groups"'
+        );
+      }
+    }
+
+    if (timeline_parameters.randomize_order) {
+      order = shuffle(order);
+    }
+
+    this.progress.order = order;
+  }
+
+  // next variable set
+  nextSet() {
+    this.progress.current_location = -1;
+    this.progress.current_variable_set++;
+    for (var i = 0; i < this.timeline_parameters.timeline.length; i++) {
+      this.timeline_parameters.timeline[i].reset();
+    }
+  }
+
+  // update the current trial node to be completed
+  // returns true if the node is complete after advance (all subnodes are also complete)
+  // returns false otherwise
+  advance() {
+    const progress = this.progress;
+    const timeline_parameters = this.timeline_parameters;
+    const internal = this.jsPsych.internal;
+
+    // first check to see if done
+    if (progress.done) {
+      return true;
+    }
+
+    // if node has not started yet (progress.current_location == -1),
+    // then try to start the node.
+    if (progress.current_location == -1) {
+      // check for on_timeline_start and conditonal function on nodes with timelines
+      if (typeof timeline_parameters !== "undefined") {
+        // only run the conditional function if this is the first repetition of the timeline when
+        // repetitions > 1, and only when on the first variable set
+        if (
+          typeof timeline_parameters.conditional_function !== "undefined" &&
+          progress.current_repetition == 0 &&
+          progress.current_variable_set == 0
+        ) {
+          internal.call_immediate = true;
+          var conditional_result = timeline_parameters.conditional_function();
+          internal.call_immediate = false;
+          // if the conditional_function() returns false, then the timeline
+          // doesn't run and is marked as complete.
+          if (conditional_result == false) {
+            progress.done = true;
+            return true;
+          }
+        }
+
+        // if we reach this point then the node has its own timeline and will start
+        // so we need to check if there is an on_timeline_start function if we are on the first variable set
+        if (
+          typeof timeline_parameters.on_timeline_start !== "undefined" &&
+          progress.current_variable_set == 0
+        ) {
+          timeline_parameters.on_timeline_start();
+        }
+      }
+      // if we reach this point, then either the node doesn't have a timeline of the
+      // conditional function returned true and it can start
+      progress.current_location = 0;
+      // call advance again on this node now that it is pointing to a new location
+      return this.advance();
+    }
+
+    // if this node has a timeline, propogate down to the current trial.
+    if (typeof timeline_parameters !== "undefined") {
+      var have_node_to_run = false;
+      // keep incrementing the location in the timeline until one of the nodes reached is incomplete
+      while (
+        progress.current_location < timeline_parameters.timeline.length &&
+        have_node_to_run == false
+      ) {
+        // check to see if the node currently pointed at is done
+        var target_complete = timeline_parameters.timeline[progress.current_location].advance();
+        if (!target_complete) {
+          have_node_to_run = true;
+          return false;
+        } else {
+          progress.current_location++;
+        }
+      }
+
+      // if we've reached the end of the timeline (which, if the code is here, we have)
+
+      // there are a few steps to see what to do next...
+
+      // first, check the timeline_variables to see if we need to loop through again
+      // with a new set of variables
+      if (progress.current_variable_set < progress.order.length - 1) {
+        // reset the progress of the node to be with the new set
+        this.nextSet();
+        // then try to advance this node again.
+        return this.advance();
+      }
+
+      // if we're all done with the timeline_variables, then check to see if there are more repetitions
+      else if (progress.current_repetition < timeline_parameters.repetitions - 1) {
+        this.nextRepetiton();
+        // check to see if there is an on_timeline_finish function
+        if (typeof timeline_parameters.on_timeline_finish !== "undefined") {
+          timeline_parameters.on_timeline_finish();
+        }
+        return this.advance();
+      }
+
+      // if we're all done with the repetitions...
+      else {
+        // check to see if there is an on_timeline_finish function
+        if (typeof timeline_parameters.on_timeline_finish !== "undefined") {
+          timeline_parameters.on_timeline_finish();
+        }
+
+        // if we're all done with the repetitions, check if there is a loop function.
+        if (typeof timeline_parameters.loop_function !== "undefined") {
+          internal.call_immediate = true;
+          if (timeline_parameters.loop_function(this.generatedData())) {
+            this.reset();
+            internal.call_immediate = false;
+            return this.parent_node.advance();
+          } else {
+            progress.done = true;
+            internal.call_immediate = false;
+            return true;
+          }
+        }
+      }
+
+      // no more loops on this timeline, we're done!
+      progress.done = true;
+      return true;
+    }
+  }
+
+  // check the status of the done flag
+  isComplete() {
+    return this.progress.done;
+  }
+
+  // getter method for timeline variables
+  getTimelineVariableValue(variable_name: string) {
+    if (typeof this.timeline_parameters == "undefined") {
+      return undefined;
+    }
+    var v =
+      this.timeline_parameters.timeline_variables[
+        this.progress.order[this.progress.current_variable_set]
+      ][variable_name];
+    return v;
+  }
+
+  // recursive upward search for timeline variables
+  findTimelineVariable(variable_name) {
+    var v = this.getTimelineVariableValue(variable_name);
+    if (typeof v == "undefined") {
+      if (typeof this.parent_node !== "undefined") {
+        return this.parent_node.findTimelineVariable(variable_name);
+      } else {
+        return undefined;
+      }
+    } else {
+      return v;
+    }
+  }
+
+  // recursive downward search for active trial to extract timeline variable
+  timelineVariable(variable_name: string) {
+    if (typeof this.timeline_parameters == "undefined") {
+      return this.findTimelineVariable(variable_name);
+    } else {
+      // if progress.current_location is -1, then the timeline variable is being evaluated
+      // in a function that runs prior to the trial starting, so we should treat that trial
+      // as being the active trial for purposes of finding the value of the timeline variable
+      var loc = Math.max(0, this.progress.current_location);
+      // if loc is greater than the number of elements on this timeline, then the timeline
+      // variable is being evaluated in a function that runs after the trial on the timeline
+      // are complete but before advancing to the next (like a loop_function).
+      // treat the last active trial as the active trial for this purpose.
+      if (loc == this.timeline_parameters.timeline.length) {
+        loc = loc - 1;
+      }
+      // now find the variable
+      return this.timeline_parameters.timeline[loc].timelineVariable(variable_name);
+    }
+  }
+
+  // recursively get all the timeline variables for this trial
+  allTimelineVariables() {
+    var all_tvs = this.allTimelineVariablesNames();
+    var all_tvs_vals = <any>{};
+    for (var i = 0; i < all_tvs.length; i++) {
+      all_tvs_vals[all_tvs[i]] = this.timelineVariable(all_tvs[i]);
+    }
+    return all_tvs_vals;
+  }
+
+  // helper to get all the names at this stage.
+  allTimelineVariablesNames(so_far = []) {
+    if (typeof this.timeline_parameters !== "undefined") {
+      so_far = so_far.concat(
+        Object.keys(
+          this.timeline_parameters.timeline_variables[
+            this.progress.order[this.progress.current_variable_set]
+          ]
+        )
+      );
+      // if progress.current_location is -1, then the timeline variable is being evaluated
+      // in a function that runs prior to the trial starting, so we should treat that trial
+      // as being the active trial for purposes of finding the value of the timeline variable
+      var loc = Math.max(0, this.progress.current_location);
+      // if loc is greater than the number of elements on this timeline, then the timeline
+      // variable is being evaluated in a function that runs after the trial on the timeline
+      // are complete but before advancing to the next (like a loop_function).
+      // treat the last active trial as the active trial for this purpose.
+      if (loc == this.timeline_parameters.timeline.length) {
+        loc = loc - 1;
+      }
+      // now find the variable
+      return this.timeline_parameters.timeline[loc].allTimelineVariablesNames(so_far);
+    }
+    if (typeof this.timeline_parameters == "undefined") {
+      return so_far;
+    }
+  }
+
+  // recursively get the number of **trials** contained in the timeline
+  // assuming that while loops execute exactly once and if conditionals
+  // always run
+  length() {
+    var length = 0;
+    if (typeof this.timeline_parameters !== "undefined") {
+      for (var i = 0; i < this.timeline_parameters.timeline.length; i++) {
+        length += this.timeline_parameters.timeline[i].length();
+      }
+    } else {
+      return 1;
+    }
+    return length;
+  }
+
+  // return the percentage of trials completed, grouped at the first child level
+  // counts a set of trials as complete when the child node is done
+  percentComplete() {
+    var total_trials = this.length();
+    var completed_trials = 0;
+    for (var i = 0; i < this.timeline_parameters.timeline.length; i++) {
+      if (this.timeline_parameters.timeline[i].isComplete()) {
+        completed_trials += this.timeline_parameters.timeline[i].length();
+      }
+    }
+    return (completed_trials / total_trials) * 100;
+  }
+
+  // resets the node and all subnodes to original state
+  // but increments the current_iteration counter
+  reset() {
+    this.progress.current_location = -1;
+    this.progress.current_repetition = 0;
+    this.progress.current_variable_set = 0;
+    this.progress.current_iteration++;
+    this.progress.done = false;
+    this.setTimelineVariablesOrder();
+    if (typeof this.timeline_parameters != "undefined") {
+      for (var i = 0; i < this.timeline_parameters.timeline.length; i++) {
+        this.timeline_parameters.timeline[i].reset();
+      }
+    }
+  }
+
+  // mark this node as finished
+  end() {
+    this.progress.done = true;
+  }
+
+  // recursively end whatever sub-node is running the current trial
+  endActiveNode() {
+    if (typeof this.timeline_parameters == "undefined") {
+      this.end();
+      this.parent_node.end();
+    } else {
+      this.timeline_parameters.timeline[this.progress.current_location].endActiveNode();
+    }
+  }
+
+  // get a unique ID associated with this node
+  // the ID reflects the current iteration through this node.
+  ID() {
+    var id = "";
+    if (typeof this.parent_node == "undefined") {
+      return "0." + this.progress.current_iteration;
+    } else {
+      id += this.parent_node.ID() + "-";
+      id += this.relative_id + "." + this.progress.current_iteration;
+      return id;
+    }
+  }
+
+  // get the ID of the active trial
+  activeID() {
+    if (typeof this.timeline_parameters == "undefined") {
+      return this.ID();
+    } else {
+      return this.timeline_parameters.timeline[this.progress.current_location].activeID();
+    }
+  }
+
+  // get all the data generated within this node
+  generatedData() {
+    return this.jsPsych.data.getDataByTimelineNode(this.ID());
+  }
+
+  // get all the trials of a particular type
+  trialsOfType(type) {
+    if (typeof this.timeline_parameters == "undefined") {
+      if (this.trial_parameters.type == type) {
+        return this.trial_parameters;
+      } else {
+        return [];
+      }
+    } else {
+      var trials = [];
+      for (var i = 0; i < this.timeline_parameters.timeline.length; i++) {
+        var t = this.timeline_parameters.timeline[i].trialsOfType(type);
+        trials = trials.concat(t);
+      }
+      return trials;
+    }
+  }
+
+  // add new trials to end of this timeline
+  insert(parameters) {
+    if (typeof this.timeline_parameters === "undefined") {
+      console.error("Cannot add new trials to a trial-level node.");
+    } else {
+      this.timeline_parameters.timeline.push(
+        new TimelineNode(
+          this.jsPsych,
+          { ...this.node_trial_data, ...parameters },
+          this,
+          this.timeline_parameters.timeline.length
+        )
+      );
+    }
+  }
+}

package/src/index.ts

@@ -0,0 +1,71 @@
+import { JsPsych } from "./JsPsych";
+import { MigrationError } from "./migration";
+
+// temporary patch for Safari
+if (
+  typeof window !== "undefined" &&
+  window.hasOwnProperty("webkitAudioContext") &&
+  !window.hasOwnProperty("AudioContext")
+) {
+  // @ts-expect-error
+  window.AudioContext = webkitAudioContext;
+}
+// end patch
+
+// The following function provides a uniform interface to initialize jsPsych, no matter whether a
+// browser supports ES6 classes or not (and whether the ES6 build or the Babel build is used).
+/**
+ * Creates a new JsPsych instance using the provided options.
+ *
+ * @param options The options to pass to the JsPsych constructor
+ * @returns A new JsPsych instance
+ */
+export function initJsPsych(options?) {
+  const jsPsych = new JsPsych(options);
+
+  // Handle invocations of non-existent v6 methods with migration errors
+  const migrationMessages = {
+    init: "`jsPsych.init()` was replaced by `initJsPsych()` in jsPsych v7.",
+
+    ALL_KEYS: 'jsPsych.ALL_KEYS was replaced by the "ALL_KEYS" string in jsPsych v7.',
+    NO_KEYS: 'jsPsych.NO_KEYS was replaced by the "NO_KEYS" string in jsPsych v7.',
+
+    // Getter functions that were renamed
+    currentTimelineNodeID:
+      "`currentTimelineNodeID()` was renamed to `getCurrentTimelineNodeID()` in jsPsych v7.",
+    progress: "`progress()` was renamed to `getProgress()` in jsPsych v7.",
+    startTime: "`startTime()` was renamed to `getStartTime()` in jsPsych v7.",
+    totalTime: "`totalTime()` was renamed to `getTotalTime()` in jsPsych v7.",
+    currentTrial: "`currentTrial()` was renamed to `getCurrentTrial()` in jsPsych v7.",
+    initSettings: "`initSettings()` was renamed to `getInitSettings()` in jsPsych v7.",
+    allTimelineVariables:
+      "`allTimelineVariables()` was renamed to `getAllTimelineVariables()` in jsPsych v7.",
+  };
+
+  Object.defineProperties(
+    jsPsych,
+    Object.fromEntries(
+      Object.entries(migrationMessages).map(([key, message]) => [
+        key,
+        {
+          get() {
+            throw new MigrationError(message);
+          },
+        },
+      ])
+    )
+  );
+
+  return jsPsych;
+}
+
+export { JsPsych } from "./JsPsych";
+export {
+  JsPsychPlugin,
+  PluginInfo,
+  TrialType,
+  ParameterType,
+  universalPluginParameters,
+  UniversalPluginParameters,
+} from "./modules/plugins";
+export { JsPsychExtension, JsPsychExtensionInfo } from "./modules/extensions";

package/src/migration.ts

@@ -0,0 +1,37 @@
+export class MigrationError extends Error {
+  constructor(message = "The global `jsPsych` variable is no longer available in jsPsych v7.") {
+    super(
+      `${message} Please follow the migration guide at https://www.jspsych.org/7.0/support/migration-v7/ to update your experiment.`
+    );
+    this.name = "MigrationError";
+  }
+}
+
+// Define a global jsPsych object to handle invocations on it with migration errors
+(window as any).jsPsych = {
+  get init() {
+    throw new MigrationError("`jsPsych.init()` was replaced by `initJsPsych()` in jsPsych v7.");
+  },
+
+  get data() {
+    throw new MigrationError();
+  },
+  get randomization() {
+    throw new MigrationError();
+  },
+  get turk() {
+    throw new MigrationError();
+  },
+  get pluginAPI() {
+    throw new MigrationError();
+  },
+
+  get ALL_KEYS() {
+    throw new MigrationError(
+      'jsPsych.ALL_KEYS was replaced by the "ALL_KEYS" string in jsPsych v7.'
+    );
+  },
+  get NO_KEYS() {
+    throw new MigrationError('jsPsych.NO_KEYS was replaced by the "NO_KEYS" string in jsPsych v7.');
+  },
+};