jonah-fleet 1.9.2 → 1.11.0

package/CHANGELOG.md

@@ -5,6 +5,26 @@ All notable changes to `jonah-fleet` will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.11.0](https://github.com/juliendurandeu/jonah-fleet/compare/v1.10.0...v1.11.0) (2026-09-17)
+
+
+### Features
+
+* **daemon:** auto-reconcile orphaned local routine runs on startup ([#188](https://github.com/juliendurandeu/jonah-fleet/issues/188)) ([dcc7746](https://github.com/juliendurandeu/jonah-fleet/commit/dcc7746268cd1921dbfb8e23c57ac46cf9217b83))
+
+## [1.10.0](https://github.com/juliendurandeu/jonah-fleet/compare/v1.9.2...v1.10.0) (2026-09-17)
+
+
+### Features
+
+* **radar:** expand Category A heuristics to include prompt engineering optimizations and release tag_name ([#186](https://github.com/juliendurandeu/jonah-fleet/issues/186)) ([37fb3fc](https://github.com/juliendurandeu/jonah-fleet/commit/37fb3fca85b2f880de90df6a4baf9ec50f624003))
+* **radar:** surface actionable opportunities with deterministic A/B/C classification ([#181](https://github.com/juliendurandeu/jonah-fleet/issues/181)) ([b9809c0](https://github.com/juliendurandeu/jonah-fleet/commit/b9809c0c1b54cb690c878d574cecbe1a4ce33480))
+
+
+### Bug Fixes
+
+* **runner:** capture stderr and handle signal exit codes in fallback error diagnostics ([#176](https://github.com/juliendurandeu/jonah-fleet/issues/176)) ([9bbe8eb](https://github.com/juliendurandeu/jonah-fleet/commit/9bbe8eb7cd52deab74c0bc9d503011511502a98f))
+
 ## [1.9.2](https://github.com/juliendurandeu/jonah-fleet/compare/v1.9.1...v1.9.2) (2026-09-16)
 
 
@@ -41,10 +61,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 * **runner,daemon:** prevent stale report ghosting and fix keyboard lockup in targeted prompts ([#166](https://github.com/juliendurandeu/jonah-fleet/issues/166)) ([0de89e2](https://github.com/juliendurandeu/jonah-fleet/commit/0de89e24427f9e575f08cd721434ab5156fdcb94))
 * **workflows:** harden workflow templates against shell injection, credential persistence, and timeouts ([04a0dd3](https://github.com/juliendurandeu/jonah-fleet/commit/04a0dd3a0457fd4d6db74fcd4709fcef0d28d84e))
 
-## [Unreleased] - 2026-09-16
+## [Unreleased] - 2026-09-17
 
 ### Features
 
+* **daemon:** auto-reconcile orphaned local routine run issues on daemon startup after host reboots or process crashes.
+* **radar:** expand Category A heuristics in `fetch-symphony-radar.js` to detect prompt engineering optimizations and release `tag_name` fallbacks, prioritize Category A invariants over runtime keywords, and refine empty lookback checklist phrasing ([#184](https://github.com/juliendurandeu/jonah-fleet/issues/184)).
+* **radar:** deterministically classify upstream changes across Symphony and Funes into Category A/B/C and surface architectural opportunities with callout summaries, breakdown matrices, and dynamic triage checklists ([#152](https://github.com/juliendurandeu/jonah-fleet/issues/152)).
 * **telemetry:** introduce live progress reporting in routine run tracking issues (`routine-log`) using bounded Compact Milestone Cards (3–5 bullet points for Intake & Strategy, Verification & Tests, Autonomous Handoff, and Run Completed) across `autowork`, `peer-review`, `optimizer`, and `ORCHESTRATION.md`.
 * **workflows:** automatically post Interruption Cards to routine run issue comment streams upon failure, timeout, or cancellation, linking directly to the Actions run logs before applying `status:failure,needs-attention`.
 * **runner:** add `formatMilestoneCard`, `formatInterruptionCard`, and `tryPostLocalRunMilestone` helpers to local runner `runner.ts` to post interruption cards on non-zero exit codes with offline fallback.

package/dist/index.js

@@ -2656,7 +2656,8 @@ import pc11 from "picocolors";
 import fs12 from "fs";
 import path12 from "path";
 import os2 from "os";
-import { spawn, execSync as execSync2 } from "child_process";
+import { spawn, execSync as execSync2, execFile as execFile4 } from "child_process";
+import { promisify as promisify4 } from "util";
 
 // src/lib/worktree.ts
 import fs10 from "fs";
@@ -3496,6 +3497,7 @@ var TerminalSpinner = class {
 
 // src/lib/runner.ts
 import pc10 from "picocolors";
+var execFileAsync4 = promisify4(execFile4);
 var LineBufferedStreamParser = class {
   buffer = "";
   onLine;
@@ -3677,6 +3679,25 @@ function tryPostLocalRunMilestone(cwd, issueNumber, cardContent) {
   } catch {
   }
 }
+async function tryPostLocalRunMilestoneAsync(cwd, issueNumber, cardContent) {
+  const tmpFile = path12.join(os2.tmpdir(), `jonah-fleet-milestone-${issueNumber}-${Date.now()}.md`);
+  try {
+    await fs12.promises.writeFile(tmpFile, cardContent, "utf8");
+    await execFileAsync4("gh", ["issue", "comment", String(issueNumber), "--body-file", tmpFile], {
+      cwd
+    });
+    return true;
+  } catch {
+    return false;
+  } finally {
+    try {
+      if (fs12.existsSync(tmpFile)) {
+        await fs12.promises.unlink(tmpFile);
+      }
+    } catch {
+    }
+  }
+}
 function tryReconcileLocalRunIssue(cwd, issueNumber, reportContent, exitCode, hostname, routine) {
   try {
     if (exitCode !== 0) {
@@ -3721,6 +3742,76 @@ _Generated by Jonah Fleet local runner on ${hostname}._`;
   } catch {
   }
 }
+async function tryMarkLocalRunInterruptedAsync(cwd, issueNumber, hostname, reason = "Host machine process terminated mid-execution (machine reboot or SIGKILL)", routine = "local-routine") {
+  try {
+    const interruptionCard = formatInterruptionCard({
+      routine,
+      status: reason,
+      runner: `local (${hostname})`,
+      step: "Local execution interrupted before completion"
+    });
+    await tryPostLocalRunMilestoneAsync(cwd, issueNumber, interruptionCard);
+    await execFileAsync4(
+      "gh",
+      ["issue", "edit", String(issueNumber), "--add-label", "status:failure,needs-attention", "--remove-label", "status:running"],
+      { cwd }
+    );
+    return true;
+  } catch {
+    return false;
+  }
+}
+async function tryReconcileLocalRunIssueAsync(cwd, issueNumber, reportContent, exitCode, hostname, routine) {
+  try {
+    if (exitCode !== 0) {
+      const interruptionCard = formatInterruptionCard({
+        routine: routine || "local-routine",
+        status: `exit code ${exitCode}`,
+        runner: `local (${hostname})`
+      });
+      await tryPostLocalRunMilestoneAsync(cwd, issueNumber, interruptionCard);
+    }
+    const finalBody = `${reportContent}
+
+---
+_Generated by Jonah Fleet local runner on ${hostname}._`;
+    const tmpFile = path12.join(os2.tmpdir(), `jonah-fleet-run-${issueNumber}-${Date.now()}.md`);
+    await fs12.promises.writeFile(tmpFile, finalBody, "utf8");
+    try {
+      await execFileAsync4("gh", ["issue", "edit", String(issueNumber), "--body-file", tmpFile], {
+        cwd
+      });
+      if (exitCode === 0) {
+        await execFileAsync4(
+          "gh",
+          ["issue", "edit", String(issueNumber), "--add-label", "status:success", "--remove-label", "status:running"],
+          { cwd }
+        );
+        await execFileAsync4(
+          "gh",
+          ["issue", "close", String(issueNumber), "--reason", "completed"],
+          { cwd }
+        );
+      } else {
+        await execFileAsync4(
+          "gh",
+          ["issue", "edit", String(issueNumber), "--add-label", "status:failure,needs-attention", "--remove-label", "status:running"],
+          { cwd }
+        );
+      }
+      return true;
+    } finally {
+      try {
+        if (fs12.existsSync(tmpFile)) {
+          await fs12.promises.unlink(tmpFile);
+        }
+      } catch {
+      }
+    }
+  } catch {
+    return false;
+  }
+}
 function extractFreshRunReport(executionReportPath, targetReportPath, startTime) {
   try {
     if (fs12.existsSync(executionReportPath)) {
@@ -3742,6 +3833,39 @@ function extractFreshRunReport(executionReportPath, targetReportPath, startTime)
   }
   return null;
 }
+function resolveExitCode(code, signal) {
+  return code ?? (signal ? 1 : 0);
+}
+function formatFallbackRunReport(options) {
+  const result = options.exitCode === 0 ? "SUCCESS" : "FAILURE";
+  let reportContent = `## Run Summary
+
+| Metric | Value |
+|---|---|
+| Routine | \`${options.routine}\` |
+| Timestamp | \`${options.timestamp}\` |
+| Result | \`${result}\` |
+| Exit Code | \`${options.exitCode}\` |
+| Host | \`${options.hostname}\` |
+| Target | \`${options.targetLabel}\` |
+| Duration | \`${options.durationSec}s\` |
+`;
+  if (options.exitCode !== 0) {
+    const errorChunks = [options.output?.trim(), options.stderr?.trim()].filter(Boolean);
+    const combinedError = errorChunks.join("\n");
+    if (combinedError.trim()) {
+      const sanitizedOutput = stripAnsi(combinedError.trim()).split("\n").slice(-15).join("\n");
+      reportContent += `
+### Error Output
+
+\`\`\`
+${sanitizedOutput}
+\`\`\`
+`;
+    }
+  }
+  return reportContent;
+}
 async function runLocalRoutine(options) {
   const targetDir = path12.resolve(options.targetDir);
   const routine = options.routine;
@@ -3970,7 +4094,9 @@ Timeout: ${printTimeout}`,
       }
     }
   });
+  let accumulatedStderr = "";
   const stderrParser = new LineBufferedStreamParser((line) => {
+    accumulatedStderr += line + "\n";
     checkTargetDetection(line);
     if (options.verbose) {
       console.error(pc10.dim(`[stderr] ${line}`));
@@ -4014,9 +4140,9 @@ Timeout: ${printTimeout}`,
         spinner?.stop();
         reject(err);
       });
-      child.on("close", (code) => {
+      child.on("close", (code, signal) => {
         spinner?.stop();
-        resolve(code ?? 0);
+        resolve(resolveExitCode(code, signal));
       });
     });
   } finally {
@@ -4034,28 +4160,16 @@ Timeout: ${printTimeout}`,
   const durationSec = Math.round(durationMs / 1e3);
   let reportContent = extractFreshRunReport(executionReportPath, targetReportPath, startTime) || "";
   if (!reportContent) {
-    reportContent = `## Run Summary
-
-| Metric | Value |
-|---|---|
-| Routine | \`${routine}\` |
-| Timestamp | \`${timestamp}\` |
-| Result | \`${exitCode === 0 ? "SUCCESS" : "FAILURE"}\` |
-| Exit Code | \`${exitCode}\` |
-| Host | \`${hostname}\` |
-| Target | \`${targetLabel}\` |
-| Duration | \`${durationSec}s\` |
-`;
-    if (exitCode !== 0 && output.trim()) {
-      const sanitizedOutput = stripAnsi(output.trim()).split("\n").slice(-15).join("\n");
-      reportContent += `
-### Error Output
-
-\`\`\`
-${sanitizedOutput}
-\`\`\`
-`;
-    }
+    reportContent = formatFallbackRunReport({
+      routine,
+      timestamp,
+      exitCode,
+      hostname,
+      targetLabel,
+      durationSec,
+      output,
+      stderr: accumulatedStderr
+    });
   }
   try {
     fs12.writeFileSync(targetReportPath, reportContent, "utf8");
@@ -4121,6 +4235,7 @@ ${sanitizedOutput}
     success: exitCode === 0,
     exitCode,
     output,
+    stderr: accumulatedStderr,
     worktreePath,
     branchName,
     issueNumber: routineIssueNumber
@@ -4198,8 +4313,9 @@ import pc14 from "picocolors";
 // src/lib/daemon.ts
 import fs14 from "fs";
 import path14 from "path";
-import { spawn as spawn2, execFile as execFile4 } from "child_process";
-import { promisify as promisify4 } from "util";
+import os3 from "os";
+import { spawn as spawn2, execFile as execFile5 } from "child_process";
+import { promisify as promisify5 } from "util";
 
 // src/lib/daemon-keys.ts
 import readline2 from "readline";
@@ -4588,7 +4704,7 @@ function formatDaemonStatusLine(options = {}) {
 
 // src/lib/daemon.ts
 import pc13 from "picocolors";
-var execFileAsync4 = promisify4(execFile4);
+var execFileAsync5 = promisify5(execFile5);
 function getDaemonStatePath(repoRoot) {
   return path14.join(repoRoot, ".jonah-fleet", "daemon.json");
 }
@@ -4633,7 +4749,7 @@ function filterReviewablePRs(prs) {
 }
 async function getOpenReviewablePRs(repoRoot) {
   try {
-    const { stdout } = await execFileAsync4(
+    const { stdout } = await execFileAsync5(
       "gh",
       ["pr", "list", "--state", "open", "--draft=false", "--json", "number,headRefName,title"],
       { cwd: repoRoot }
@@ -4703,6 +4819,99 @@ async function stopDaemon(repoRoot) {
     return false;
   }
 }
+async function queryOrphanedLocalRunIssues(repoRoot) {
+  try {
+    const { stdout } = await execFileAsync5(
+      "gh",
+      ["issue", "list", "--state", "open", "--label", "runner:local,status:running", "--json", "number,title,createdAt", "--limit", "20"],
+      { cwd: repoRoot }
+    );
+    return JSON.parse(stdout || "[]");
+  } catch {
+    return [];
+  }
+}
+async function reconcileOrphanedLocalRuns(optionsOrRepoRoot) {
+  const options = typeof optionsOrRepoRoot === "string" ? { repoRoot: optionsOrRepoRoot } : optionsOrRepoRoot;
+  const { repoRoot } = options;
+  const queryFn = options.queryIssues || queryOrphanedLocalRunIssues;
+  try {
+    const issues = await queryFn(repoRoot);
+    if (!issues || issues.length === 0) return 0;
+    const runsDir = path14.join(repoRoot, ".jonah-fleet", "runs");
+    let reconciledCount = 0;
+    const hostname = os3.hostname();
+    for (const issue of issues) {
+      try {
+        let completedReport;
+        let isSuccess = false;
+        let metaRoutine;
+        if (fs14.existsSync(runsDir)) {
+          const files = fs14.readdirSync(runsDir);
+          for (const file of files) {
+            if (file.endsWith(".json")) {
+              try {
+                const meta = JSON.parse(fs14.readFileSync(path14.join(runsDir, file), "utf8"));
+                if (meta.issueNumber === issue.number) {
+                  metaRoutine = meta.routine;
+                  const mdFile = file.replace(/\.json$/, ".md");
+                  const mdPath = path14.join(runsDir, mdFile);
+                  if (fs14.existsSync(mdPath)) {
+                    completedReport = fs14.readFileSync(mdPath, "utf8");
+                    isSuccess = meta.success === true || meta.exitCode === 0;
+                    break;
+                  }
+                }
+              } catch {
+              }
+            }
+          }
+        }
+        if (options.reconcileRun) {
+          const ok = await options.reconcileRun(
+            repoRoot,
+            issue.number,
+            completedReport,
+            isSuccess,
+            metaRoutine
+          );
+          if (ok) reconciledCount++;
+        } else if (completedReport) {
+          const ok = await tryReconcileLocalRunIssueAsync(
+            repoRoot,
+            issue.number,
+            completedReport,
+            isSuccess ? 0 : 1,
+            hostname,
+            metaRoutine
+          );
+          if (ok) reconciledCount++;
+        } else {
+          const ok = await tryMarkLocalRunInterruptedAsync(
+            repoRoot,
+            issue.number,
+            hostname,
+            "Host machine daemon process was terminated before completion (e.g. machine reboot or SIGKILL).",
+            metaRoutine || "local-routine"
+          );
+          if (ok) reconciledCount++;
+        }
+      } catch {
+      }
+    }
+    if (reconciledCount > 0) {
+      console.log(
+        pc13.yellow(
+          `
+\u26A0\uFE0F  Reconciled ${reconciledCount} orphaned local routine run issue(s) from previous session.`
+        )
+      );
+    }
+    return reconciledCount;
+  } catch {
+    return 0;
+  }
+}
 async function drainReviewQueue(drainOptions) {
   const {
     repoRoot,
@@ -5362,6 +5571,8 @@ ${pc13.cyan("Enter Issue # to work (Esc/Enter to cancel):")} `, {
     }
   });
   keyboard?.start();
+  void reconcileOrphanedLocalRuns(repoRoot).catch(() => {
+  });
   if (routines.includes("peer-review")) {
     await performReviewDrain();
   }

package/dist/lib/daemon.d.ts

@@ -58,6 +58,26 @@ export declare function startBackgroundDaemon(repoRoot: string, options?: Daemon
  * Stops a running daemon process.
  */
 export declare function stopDaemon(repoRoot: string): Promise<boolean>;
+export interface ReconcileOrphanedRunsOptions {
+    repoRoot: string;
+    queryIssues?: (repoRoot: string) => Promise<Array<{
+        number: number;
+        title: string;
+        createdAt: string;
+    }>>;
+    reconcileRun?: (repoRoot: string, issueNumber: number, report: string | undefined, isSuccess: boolean, routine?: string) => Promise<boolean>;
+}
+export declare function queryOrphanedLocalRunIssues(repoRoot: string): Promise<Array<{
+    number: number;
+    title: string;
+    createdAt: string;
+}>>;
+/**
+ * Scans for open routine run issues labeled `runner:local,status:running` that were abandoned
+ * by a process crash, SIGKILL, or host machine reboot, and reconciles them.
+ * Operates asynchronously and fails gracefully on network / CLI errors without preventing daemon startup.
+ */
+export declare function reconcileOrphanedLocalRuns(optionsOrRepoRoot: string | ReconcileOrphanedRunsOptions): Promise<number>;
 export interface DrainReviewQueueOptions {
     repoRoot: string;
     state?: DaemonState;

package/dist/lib/daemon.d.ts.map

@@ -1 +1 @@
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package/dist/lib/runner.d.ts

@@ -19,6 +19,7 @@ export interface RunLocalRoutineResult {
     success: boolean;
     exitCode: number;
     output: string;
+    stderr?: string;
     worktreePath?: string;
     branchName?: string;
     issueNumber?: number;
@@ -139,17 +140,54 @@ export declare function formatInterruptionCard(options: InterruptionCardOptions)
  * Fails gracefully if offline or unauthenticated.
  */
 export declare function tryPostLocalRunMilestone(cwd: string, issueNumber: number, cardContent: string): void;
+/**
+ * Posts a milestone comment to a local routine tracking issue asynchronously.
+ * Fails gracefully if offline or unauthenticated.
+ */
+export declare function tryPostLocalRunMilestoneAsync(cwd: string, issueNumber: number, cardContent: string): Promise<boolean>;
 /**
  * Reconciles a GitHub issue for local routine execution.
  * Closes the issue if success, leaves it open with needs-attention if failure.
  * Fails gracefully if offline or unauthenticated.
  */
 export declare function tryReconcileLocalRunIssue(cwd: string, issueNumber: number, reportContent: string, exitCode: number, hostname: string, routine?: string): void;
+/**
+ * Asynchronously marks an interrupted local routine run as failed and posts an interruption card.
+ * Leaves the issue open with status:failure,needs-attention for maintainer triage.
+ * Fails gracefully if offline or unauthenticated.
+ */
+export declare function tryMarkLocalRunInterruptedAsync(cwd: string, issueNumber: number, hostname: string, reason?: string, routine?: string): Promise<boolean>;
+/**
+ * Asynchronously reconciles a GitHub issue for local routine execution.
+ * Closes the issue if success, leaves it open with needs-attention if failure.
+ * Fails gracefully if offline or unauthenticated.
+ */
+export declare function tryReconcileLocalRunIssueAsync(cwd: string, issueNumber: number, reportContent: string, exitCode: number, hostname: string, routine?: string): Promise<boolean>;
 /**
  * Reads a freshly generated run report from execution or target directory.
  * Returns null if no fresh report exists (e.g. file missing or older than run start).
  */
 export declare function extractFreshRunReport(executionReportPath: string, targetReportPath: string, startTime: number): string | null;
+export interface FallbackReportOptions {
+    routine: string;
+    timestamp: string;
+    exitCode: number;
+    hostname: string;
+    targetLabel: string;
+    durationSec: number;
+    output?: string;
+    stderr?: string;
+}
+/**
+ * Resolves child process exit code, ensuring signals (e.g. SIGTERM, SIGINT)
+ * resolve to a non-zero exit code instead of defaulting to 0.
+ */
+export declare function resolveExitCode(code: number | null, signal: NodeJS.Signals | string | null): number;
+/**
+ * Formats a fallback summary markdown report when no fresh run-report.md was generated.
+ * Includes sanitized trailing error output from stdout and/or stderr if exitCode is non-zero.
+ */
+export declare function formatFallbackRunReport(options: FallbackReportOptions): string;
 /**
  * Runs a routine locally with worktree isolation and Antigravity CLI invocation.
  */

package/dist/lib/runner.d.ts.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "jonah-fleet",
-  "version": "1.9.2",
+  "version": "1.11.0",
   "description": "Standalone autonomous agent fleet with Symphony orchestration, claim protocols, and continuous improvement loops",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",