jcampconverter 8.2.2 → 8.2.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (140) hide show
  1. package/lib/2d/add2D.d.ts +2 -0
  2. package/lib/2d/add2D.d.ts.map +1 -0
  3. package/lib/2d/add2D.js +17 -0
  4. package/lib/2d/add2D.js.map +1 -0
  5. package/lib/2d/convertTo3DZ.d.ts +11 -0
  6. package/lib/2d/convertTo3DZ.d.ts.map +1 -0
  7. package/lib/2d/convertTo3DZ.js +59 -0
  8. package/lib/2d/convertTo3DZ.js.map +1 -0
  9. package/lib/2d/generateContourLines.d.ts +8 -0
  10. package/lib/2d/generateContourLines.d.ts.map +1 -0
  11. package/lib/2d/generateContourLines.js +163 -0
  12. package/lib/2d/generateContourLines.js.map +1 -0
  13. package/lib/complexChromatogram.d.ts +4 -0
  14. package/lib/complexChromatogram.d.ts.map +1 -0
  15. package/lib/complexChromatogram.js +49 -0
  16. package/lib/complexChromatogram.js.map +1 -0
  17. package/lib/convert.d.ts +139 -0
  18. package/lib/convert.d.ts.map +1 -0
  19. package/lib/convert.js +383 -0
  20. package/lib/convert.js.map +1 -0
  21. package/lib/convertToFloatArray.d.ts +2 -0
  22. package/lib/convertToFloatArray.d.ts.map +1 -0
  23. package/lib/convertToFloatArray.js +11 -0
  24. package/lib/convertToFloatArray.js.map +1 -0
  25. package/lib/createTree.d.ts +29 -0
  26. package/lib/createTree.d.ts.map +1 -0
  27. package/lib/createTree.js +98 -0
  28. package/lib/createTree.js.map +1 -0
  29. package/lib/index.d.ts +3 -0
  30. package/lib/index.d.ts.map +1 -0
  31. package/lib/index.js +8 -1214
  32. package/lib/index.js.map +1 -0
  33. package/lib/parse/fastParseXYData.d.ts +2 -0
  34. package/lib/parse/fastParseXYData.d.ts.map +1 -0
  35. package/lib/parse/fastParseXYData.js +192 -0
  36. package/lib/parse/fastParseXYData.js.map +1 -0
  37. package/lib/parse/parsePeakTable.d.ts +2 -0
  38. package/lib/parse/parsePeakTable.d.ts.map +1 -0
  39. package/lib/parse/parsePeakTable.js +67 -0
  40. package/lib/parse/parsePeakTable.js.map +1 -0
  41. package/lib/parse/parseXYA.d.ts +2 -0
  42. package/lib/parse/parseXYA.d.ts.map +1 -0
  43. package/lib/parse/parseXYA.js +17 -0
  44. package/lib/parse/parseXYA.js.map +1 -0
  45. package/lib/postProcessing.d.ts +2 -0
  46. package/lib/postProcessing.d.ts.map +1 -0
  47. package/lib/postProcessing.js +50 -0
  48. package/lib/postProcessing.js.map +1 -0
  49. package/lib/postProcessingNMR.d.ts +2 -0
  50. package/lib/postProcessingNMR.d.ts.map +1 -0
  51. package/lib/postProcessingNMR.js +94 -0
  52. package/lib/postProcessingNMR.js.map +1 -0
  53. package/lib/prepareNtuplesDatatable.d.ts +2 -0
  54. package/lib/prepareNtuplesDatatable.d.ts.map +1 -0
  55. package/lib/prepareNtuplesDatatable.js +87 -0
  56. package/lib/prepareNtuplesDatatable.js.map +1 -0
  57. package/lib/prepareSpectrum.d.ts +2 -0
  58. package/lib/prepareSpectrum.d.ts.map +1 -0
  59. package/lib/prepareSpectrum.js +10 -0
  60. package/lib/prepareSpectrum.js.map +1 -0
  61. package/lib/profiling.d.ts +2 -0
  62. package/lib/profiling.d.ts.map +1 -0
  63. package/lib/profiling.js +12 -0
  64. package/lib/profiling.js.map +1 -0
  65. package/lib/simpleChromatogram.d.ts +2 -0
  66. package/lib/simpleChromatogram.d.ts.map +1 -0
  67. package/lib/simpleChromatogram.js +16 -0
  68. package/lib/simpleChromatogram.js.map +1 -0
  69. package/lib-esm/2d/add2D.d.ts +2 -0
  70. package/lib-esm/2d/add2D.d.ts.map +1 -0
  71. package/lib-esm/2d/add2D.js +11 -0
  72. package/lib-esm/2d/add2D.js.map +1 -0
  73. package/lib-esm/2d/convertTo3DZ.d.ts +11 -0
  74. package/lib-esm/2d/convertTo3DZ.d.ts.map +1 -0
  75. package/lib-esm/2d/convertTo3DZ.js +53 -0
  76. package/lib-esm/2d/convertTo3DZ.js.map +1 -0
  77. package/lib-esm/2d/generateContourLines.d.ts +8 -0
  78. package/lib-esm/2d/generateContourLines.d.ts.map +1 -0
  79. package/lib-esm/2d/generateContourLines.js +160 -0
  80. package/lib-esm/2d/generateContourLines.js.map +1 -0
  81. package/lib-esm/complexChromatogram.d.ts +4 -0
  82. package/lib-esm/complexChromatogram.d.ts.map +1 -0
  83. package/lib-esm/complexChromatogram.js +43 -0
  84. package/lib-esm/complexChromatogram.js.map +1 -0
  85. package/lib-esm/convert.d.ts +139 -0
  86. package/lib-esm/convert.d.ts.map +1 -0
  87. package/lib-esm/convert.js +376 -0
  88. package/lib-esm/convert.js.map +1 -0
  89. package/lib-esm/convertToFloatArray.d.ts +2 -0
  90. package/lib-esm/convertToFloatArray.d.ts.map +1 -0
  91. package/lib-esm/convertToFloatArray.js +8 -0
  92. package/lib-esm/convertToFloatArray.js.map +1 -0
  93. package/lib-esm/createTree.d.ts +29 -0
  94. package/lib-esm/createTree.d.ts.map +1 -0
  95. package/lib-esm/createTree.js +94 -0
  96. package/lib-esm/createTree.js.map +1 -0
  97. package/lib-esm/index.d.ts +3 -0
  98. package/lib-esm/index.d.ts.map +1 -0
  99. package/lib-esm/index.js +3 -0
  100. package/lib-esm/index.js.map +1 -0
  101. package/lib-esm/parse/fastParseXYData.d.ts +2 -0
  102. package/lib-esm/parse/fastParseXYData.d.ts.map +1 -0
  103. package/lib-esm/parse/fastParseXYData.js +189 -0
  104. package/lib-esm/parse/fastParseXYData.js.map +1 -0
  105. package/lib-esm/parse/parsePeakTable.d.ts +2 -0
  106. package/lib-esm/parse/parsePeakTable.d.ts.map +1 -0
  107. package/lib-esm/parse/parsePeakTable.js +64 -0
  108. package/lib-esm/parse/parsePeakTable.js.map +1 -0
  109. package/lib-esm/parse/parseXYA.d.ts +2 -0
  110. package/lib-esm/parse/parseXYA.d.ts.map +1 -0
  111. package/lib-esm/parse/parseXYA.js +14 -0
  112. package/lib-esm/parse/parseXYA.js.map +1 -0
  113. package/lib-esm/postProcessing.d.ts +2 -0
  114. package/lib-esm/postProcessing.d.ts.map +1 -0
  115. package/lib-esm/postProcessing.js +44 -0
  116. package/lib-esm/postProcessing.js.map +1 -0
  117. package/lib-esm/postProcessingNMR.d.ts +2 -0
  118. package/lib-esm/postProcessingNMR.d.ts.map +1 -0
  119. package/lib-esm/postProcessingNMR.js +91 -0
  120. package/lib-esm/postProcessingNMR.js.map +1 -0
  121. package/lib-esm/prepareNtuplesDatatable.d.ts +2 -0
  122. package/lib-esm/prepareNtuplesDatatable.d.ts.map +1 -0
  123. package/lib-esm/prepareNtuplesDatatable.js +84 -0
  124. package/lib-esm/prepareNtuplesDatatable.js.map +1 -0
  125. package/lib-esm/prepareSpectrum.d.ts +2 -0
  126. package/lib-esm/prepareSpectrum.d.ts.map +1 -0
  127. package/lib-esm/prepareSpectrum.js +7 -0
  128. package/lib-esm/prepareSpectrum.js.map +1 -0
  129. package/lib-esm/profiling.d.ts +2 -0
  130. package/lib-esm/profiling.d.ts.map +1 -0
  131. package/lib-esm/profiling.js +9 -0
  132. package/lib-esm/profiling.js.map +1 -0
  133. package/lib-esm/simpleChromatogram.d.ts +2 -0
  134. package/lib-esm/simpleChromatogram.d.ts.map +1 -0
  135. package/lib-esm/simpleChromatogram.js +13 -0
  136. package/lib-esm/simpleChromatogram.js.map +1 -0
  137. package/package.json +22 -17
  138. package/src/convert.js +57 -13
  139. package/src/createTree.js +16 -3
  140. package/CHANGELOG.md +0 -427
package/lib/convert.js ADDED
@@ -0,0 +1,383 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.convert = void 0;
7
+ const dynamic_typing_1 = require("dynamic-typing");
8
+ const ensure_string_1 = require("ensure-string");
9
+ const complexChromatogram_1 = require("./complexChromatogram");
10
+ const convertToFloatArray_1 = __importDefault(require("./convertToFloatArray"));
11
+ const fastParseXYData_1 = __importDefault(require("./parse/fastParseXYData"));
12
+ const parsePeakTable_1 = __importDefault(require("./parse/parsePeakTable"));
13
+ const parseXYA_1 = __importDefault(require("./parse/parseXYA"));
14
+ const postProcessing_1 = __importDefault(require("./postProcessing"));
15
+ const prepareNtuplesDatatable_1 = __importDefault(require("./prepareNtuplesDatatable"));
16
+ const prepareSpectrum_1 = __importDefault(require("./prepareSpectrum"));
17
+ const profiling_1 = __importDefault(require("./profiling"));
18
+ // the following RegExp can only be used for XYdata, some peakTables have values with a "E-5" ...
19
+ const ntuplesSeparatorRegExp = /[ \t]*,[ \t]*/;
20
+ class Spectrum {
21
+ }
22
+ const defaultOptions = {
23
+ keepRecordsRegExp: /^$/,
24
+ canonicDataLabels: true,
25
+ canonicMetadataLabels: false,
26
+ dynamicTyping: true,
27
+ withoutXY: false,
28
+ chromatogram: false,
29
+ keepSpectra: false,
30
+ noContour: false,
31
+ nbContourLevels: 7,
32
+ noiseMultiplier: 5,
33
+ profiling: false,
34
+ };
35
+ /**
36
+ *
37
+ * @typedef {object} ConvertOptions
38
+ * @property {RegExp} [options.keepRecordsRegExp=/^$/] - By default we don't keep meta information.
39
+ * @property {boolean} [options.canonicDataLabels=true] - Canonize the Labels (uppercase without symbol).
40
+ * @property {boolean} [options.canonicMetadataLabels=false] - Canonize the metadata Labels (uppercase without symbol).
41
+ * @property {boolean} [options.dynamicTyping=false] - Convert numbers to Number.
42
+ * @property {boolean} [options.withoutXY=false] - Remove the XY data.
43
+ * @property {boolean} [options.chromatogram=false] - Special post-processing for GC / HPLC / MS.
44
+ * @property {boolean} [options.keepSpectra=false] - Force to keep the spectra in case of 2D.
45
+ * @property {boolean} [options.noContour=false] - Don't calculate countour in case of 2D.
46
+ * @property {number} [options.nbContourLevels=7] - Number of positive / negative contour levels to calculate.
47
+ * @property {number} [options.noiseMultiplier=5] - Define for 2D the level as 5 times the median as default.
48
+ * @property {boolean} [options.profiling=false] - Add profiling information.
49
+ */
50
+ /**
51
+ *
52
+ * @typedef {object} Ntuples
53
+ * @property {string[]} [varname]
54
+ * @property {string[]} [symbol]
55
+ * @property {string[]} [vartype]
56
+ * @property {string[]} [varform]
57
+ * @property {number[]} [vardim]
58
+ * @property {string[]} [units]
59
+ * @property {number[]} [factor]
60
+ * @property {number[]} [first]
61
+ * @property {number[]} [last]
62
+ * @property {number[]} [min]
63
+ * @property {number[]} [max]
64
+ * @property {string[]} [nucleus]
65
+ */
66
+ /**
67
+ *
68
+ * @typedef { object } Entry
69
+ * @property {Spectrum[]} spectra
70
+ * @property {Ntuples} ntuples
71
+ * @property {object} meta
72
+ * @property {object} tmp
73
+ * @property {string} [title]
74
+ * @property {string} [dataType]
75
+ * @property {string} [dataClass]
76
+ * @property {boolean} [twoD]
77
+ */
78
+ /**
79
+ *
80
+ * @typedef { object } ConvertResult
81
+ * @property { object[] | boolean } profiling
82
+ * @property { string[] } logs
83
+ * @property { object[] } entries
84
+ * @property { Entry[] } flatten
85
+ */
86
+ /**
87
+ * Parse a jcamp.
88
+ *
89
+ * @param {string|ArrayBuffer|Uint8Array} jcamp
90
+ * @param {ConvertOptions} [options]
91
+ * @returns {ConvertResult}
92
+ */
93
+ function convert(jcamp, options = {}) {
94
+ jcamp = (0, ensure_string_1.ensureString)(jcamp);
95
+ options = { ...defaultOptions, ...options };
96
+ options.wantXY = !options.withoutXY;
97
+ options.start = Date.now();
98
+ let entriesFlat = [];
99
+ let result = {
100
+ profiling: options.profiling ? [] : false,
101
+ logs: [],
102
+ entries: [],
103
+ };
104
+ let tmpResult = { children: [] };
105
+ let currentEntry = tmpResult;
106
+ let parentsStack = [];
107
+ let spectrum = new Spectrum();
108
+ if (typeof jcamp !== 'string') {
109
+ throw new TypeError('the JCAMP should be a string');
110
+ }
111
+ (0, profiling_1.default)(result, 'Before split to LDRS', options);
112
+ let ldrs = jcamp.replace(/[\r\n]+##/g, '\n##').split('\n##');
113
+ (0, profiling_1.default)(result, 'Split to LDRS', options);
114
+ if (ldrs[0])
115
+ ldrs[0] = ldrs[0].replace(/^[\r\n ]*##/, '');
116
+ for (let ldr of ldrs) {
117
+ // This is a new LDR
118
+ let position = ldr.indexOf('=');
119
+ let dataLabel = position > 0 ? ldr.substring(0, position) : ldr;
120
+ let dataValue = position > 0 ? ldr.substring(position + 1).trim() : '';
121
+ let canonicDataLabel = dataLabel.replace(/[_ -]/g, '').toUpperCase();
122
+ if (canonicDataLabel === 'DATATABLE') {
123
+ let endLine = dataValue.indexOf('\n');
124
+ if (endLine === -1)
125
+ endLine = dataValue.indexOf('\r');
126
+ if (endLine > 0) {
127
+ // ##DATA TABLE= (X++(I..I)), XYDATA
128
+ // We need to find the variables
129
+ let infos = dataValue.substring(0, endLine).split(/[ ,;\t]+/);
130
+ (0, prepareNtuplesDatatable_1.default)(currentEntry, spectrum, infos[0]);
131
+ spectrum.datatable = infos[0];
132
+ if (infos[1] && infos[1].indexOf('PEAKS') > -1) {
133
+ canonicDataLabel = 'PEAKTABLE';
134
+ }
135
+ else if (infos[1] &&
136
+ (infos[1].indexOf('XYDATA') || infos[0].indexOf('++') > 0)) {
137
+ canonicDataLabel = 'XYDATA';
138
+ spectrum.deltaX =
139
+ (spectrum.lastX - spectrum.firstX) / (spectrum.nbPoints - 1);
140
+ }
141
+ }
142
+ }
143
+ if (canonicDataLabel === 'XYDATA') {
144
+ if (options.wantXY) {
145
+ (0, prepareSpectrum_1.default)(spectrum);
146
+ // well apparently we should still consider it is a PEAK TABLE if there are no '++' after
147
+ if (dataValue.match(/.*\+\+.*/)) {
148
+ // ex: (X++(Y..Y))
149
+ spectrum.deltaX =
150
+ (spectrum.lastX - spectrum.firstX) / (spectrum.nbPoints - 1);
151
+ (0, fastParseXYData_1.default)(spectrum, dataValue, result);
152
+ }
153
+ else {
154
+ (0, parsePeakTable_1.default)(spectrum, dataValue, result);
155
+ }
156
+ currentEntry.spectra.push(spectrum);
157
+ spectrum = new Spectrum();
158
+ }
159
+ continue;
160
+ }
161
+ else if (canonicDataLabel === 'PEAKTABLE') {
162
+ if (options.wantXY) {
163
+ (0, prepareSpectrum_1.default)(spectrum);
164
+ (0, parsePeakTable_1.default)(spectrum, dataValue, result);
165
+ currentEntry.spectra.push(spectrum);
166
+ spectrum = new Spectrum();
167
+ }
168
+ continue;
169
+ }
170
+ if (canonicDataLabel === 'PEAKASSIGNMENTS') {
171
+ if (options.wantXY) {
172
+ if (dataValue.match(/.*(XYA).*/)) {
173
+ // ex: (XYA)
174
+ (0, parseXYA_1.default)(spectrum, dataValue);
175
+ }
176
+ currentEntry.spectra.push(spectrum);
177
+ spectrum = new Spectrum();
178
+ }
179
+ continue;
180
+ }
181
+ if (canonicDataLabel === 'TITLE') {
182
+ let parentEntry = currentEntry;
183
+ if (!parentEntry.children) {
184
+ parentEntry.children = [];
185
+ }
186
+ currentEntry = {
187
+ spectra: [],
188
+ ntuples: {},
189
+ info: {},
190
+ meta: {},
191
+ tmp: {}, // tmp information we need to keep for postprocessing
192
+ };
193
+ parentEntry.children.push(currentEntry);
194
+ parentsStack.push(parentEntry);
195
+ entriesFlat.push(currentEntry);
196
+ currentEntry.title = dataValue;
197
+ }
198
+ else if (canonicDataLabel === 'DATATYPE') {
199
+ currentEntry.dataType = dataValue;
200
+ if (dataValue.match(/(^nd|\snd\s)/i)) {
201
+ currentEntry.twoD = true;
202
+ }
203
+ }
204
+ else if (canonicDataLabel === 'NTUPLES') {
205
+ if (dataValue.match(/(^nd|\snd\s)/i)) {
206
+ currentEntry.twoD = true;
207
+ }
208
+ }
209
+ else if (canonicDataLabel === 'DATACLASS') {
210
+ currentEntry.dataClass = dataValue;
211
+ }
212
+ else if (canonicDataLabel === 'XUNITS') {
213
+ spectrum.xUnits = dataValue;
214
+ }
215
+ else if (canonicDataLabel === 'YUNITS') {
216
+ spectrum.yUnits = dataValue;
217
+ }
218
+ else if (canonicDataLabel === 'FIRSTX') {
219
+ spectrum.firstX = Number(dataValue);
220
+ }
221
+ else if (canonicDataLabel === 'LASTX') {
222
+ spectrum.lastX = Number(dataValue);
223
+ }
224
+ else if (canonicDataLabel === 'FIRSTY') {
225
+ spectrum.firstY = Number(dataValue);
226
+ }
227
+ else if (canonicDataLabel === 'LASTY') {
228
+ spectrum.lastY = Number(dataValue);
229
+ }
230
+ else if (canonicDataLabel === 'NPOINTS') {
231
+ spectrum.nbPoints = Number(dataValue);
232
+ }
233
+ else if (canonicDataLabel === 'XFACTOR') {
234
+ spectrum.xFactor = Number(dataValue);
235
+ }
236
+ else if (canonicDataLabel === 'YFACTOR') {
237
+ spectrum.yFactor = Number(dataValue);
238
+ }
239
+ else if (canonicDataLabel === 'MAXX') {
240
+ spectrum.maxX = Number(dataValue);
241
+ }
242
+ else if (canonicDataLabel === 'MINX') {
243
+ spectrum.minX = Number(dataValue);
244
+ }
245
+ else if (canonicDataLabel === 'MAXY') {
246
+ spectrum.maxY = Number(dataValue);
247
+ }
248
+ else if (canonicDataLabel === 'MINY') {
249
+ spectrum.minY = Number(dataValue);
250
+ }
251
+ else if (canonicDataLabel === 'DELTAX') {
252
+ spectrum.deltaX = Number(dataValue);
253
+ }
254
+ else if (canonicDataLabel === '.OBSERVEFREQUENCY' ||
255
+ canonicDataLabel === '$SFO1') {
256
+ if (!spectrum.observeFrequency) {
257
+ spectrum.observeFrequency = Number(dataValue);
258
+ }
259
+ }
260
+ else if (canonicDataLabel === '.OBSERVENUCLEUS') {
261
+ if (!spectrum.xType) {
262
+ currentEntry.xType = dataValue.replace(/[^a-zA-Z0-9]/g, '');
263
+ }
264
+ }
265
+ else if (canonicDataLabel === '$OFFSET') {
266
+ // OFFSET for Bruker spectra
267
+ currentEntry.shiftOffsetNum = 0;
268
+ if (!spectrum.shiftOffsetVal) {
269
+ spectrum.shiftOffsetVal = Number(dataValue);
270
+ }
271
+ }
272
+ else if (canonicDataLabel === '$REFERENCEPOINT') {
273
+ // OFFSET for Varian spectra
274
+ // if we activate this part it does not work for ACD specmanager
275
+ // } else if (canonicDataLabel=='.SHIFTREFERENCE') { // OFFSET FOR Bruker Spectra
276
+ // var parts = dataValue.split(/ *, */);
277
+ // currentEntry.shiftOffsetNum = parseInt(parts[2].trim());
278
+ // spectrum.shiftOffsetVal = Number(parts[3].trim());
279
+ }
280
+ else if (canonicDataLabel === 'VARNAME') {
281
+ currentEntry.ntuples.varname = dataValue.split(ntuplesSeparatorRegExp);
282
+ }
283
+ else if (canonicDataLabel === 'SYMBOL') {
284
+ currentEntry.ntuples.symbol = dataValue.split(ntuplesSeparatorRegExp);
285
+ }
286
+ else if (canonicDataLabel === 'VARTYPE') {
287
+ currentEntry.ntuples.vartype = dataValue.split(ntuplesSeparatorRegExp);
288
+ }
289
+ else if (canonicDataLabel === 'VARFORM') {
290
+ currentEntry.ntuples.varform = dataValue.split(ntuplesSeparatorRegExp);
291
+ }
292
+ else if (canonicDataLabel === 'VARDIM') {
293
+ currentEntry.ntuples.vardim = (0, convertToFloatArray_1.default)(dataValue.split(ntuplesSeparatorRegExp));
294
+ }
295
+ else if (canonicDataLabel === 'UNITS') {
296
+ currentEntry.ntuples.units = dataValue.split(ntuplesSeparatorRegExp);
297
+ }
298
+ else if (canonicDataLabel === 'FACTOR') {
299
+ currentEntry.ntuples.factor = (0, convertToFloatArray_1.default)(dataValue.split(ntuplesSeparatorRegExp));
300
+ }
301
+ else if (canonicDataLabel === 'FIRST') {
302
+ currentEntry.ntuples.first = (0, convertToFloatArray_1.default)(dataValue.split(ntuplesSeparatorRegExp));
303
+ }
304
+ else if (canonicDataLabel === 'LAST') {
305
+ currentEntry.ntuples.last = (0, convertToFloatArray_1.default)(dataValue.split(ntuplesSeparatorRegExp));
306
+ }
307
+ else if (canonicDataLabel === 'MIN') {
308
+ currentEntry.ntuples.min = (0, convertToFloatArray_1.default)(dataValue.split(ntuplesSeparatorRegExp));
309
+ }
310
+ else if (canonicDataLabel === 'MAX') {
311
+ currentEntry.ntuples.max = (0, convertToFloatArray_1.default)(dataValue.split(ntuplesSeparatorRegExp));
312
+ }
313
+ else if (canonicDataLabel === '.NUCLEUS') {
314
+ if (currentEntry.ntuples) {
315
+ currentEntry.ntuples.nucleus = dataValue.split(ntuplesSeparatorRegExp);
316
+ }
317
+ }
318
+ else if (canonicDataLabel === 'PAGE') {
319
+ spectrum.page = dataValue.trim();
320
+ spectrum.pageValue = Number(dataValue.replace(/^.*=/, ''));
321
+ spectrum.pageSymbol = spectrum.page.replace(/[=].*/, '');
322
+ }
323
+ else if (canonicDataLabel === 'RETENTIONTIME') {
324
+ spectrum.pageValue = Number(dataValue);
325
+ }
326
+ else if ((0, complexChromatogram_1.isMSField)(canonicDataLabel)) {
327
+ spectrum[(0, complexChromatogram_1.convertMSFieldToLabel)(canonicDataLabel)] = dataValue;
328
+ }
329
+ else if (canonicDataLabel === 'SAMPLEDESCRIPTION') {
330
+ spectrum.sampleDescription = dataValue;
331
+ }
332
+ else if (canonicDataLabel.startsWith('$NUC')) {
333
+ if (!currentEntry.tmp[canonicDataLabel] && !dataValue.includes('off')) {
334
+ currentEntry.tmp[canonicDataLabel] = dataValue.replace(/[<>]/g, '');
335
+ }
336
+ }
337
+ else if (canonicDataLabel === 'END') {
338
+ currentEntry = parentsStack.pop();
339
+ }
340
+ if (currentEntry &&
341
+ currentEntry.info &&
342
+ currentEntry.meta &&
343
+ canonicDataLabel.match(options.keepRecordsRegExp)) {
344
+ let value = dataValue.trim();
345
+ let target, label;
346
+ if (dataLabel.startsWith('$')) {
347
+ label = options.canonicMetadataLabels
348
+ ? canonicDataLabel.substring(1)
349
+ : dataLabel.substring(1);
350
+ target = currentEntry.meta;
351
+ }
352
+ else {
353
+ label = options.canonicDataLabels ? canonicDataLabel : dataLabel;
354
+ target = currentEntry.info;
355
+ }
356
+ if (options.dynamicTyping) {
357
+ value = (0, dynamic_typing_1.parseString)(value);
358
+ }
359
+ if (target[label]) {
360
+ if (!Array.isArray(target[label])) {
361
+ target[label] = [target[label]];
362
+ }
363
+ target[label].push(value);
364
+ }
365
+ else {
366
+ target[label] = value;
367
+ }
368
+ }
369
+ }
370
+ (0, profiling_1.default)(result, 'Finished parsing', options);
371
+ (0, postProcessing_1.default)(entriesFlat, result, options);
372
+ (0, profiling_1.default)(result, 'Total time', options);
373
+ /*
374
+ if (result.children && result.children.length>0) {
375
+ result = { ...result, ...result.children[0] };
376
+ }
377
+ */
378
+ result.entries = tmpResult.children;
379
+ result.flatten = entriesFlat;
380
+ return result;
381
+ }
382
+ exports.convert = convert;
383
+ //# sourceMappingURL=convert.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"convert.js","sourceRoot":"","sources":["../src/convert.js"],"names":[],"mappings":";;;;;;AAAA,mDAA6C;AAC7C,iDAA6C;AAE7C,+DAAyE;AACzE,gFAAwD;AACxD,8EAAsD;AACtD,4EAAoD;AACpD,gEAAwC;AACxC,sEAA8C;AAC9C,wFAAgE;AAChE,wEAAgD;AAChD,4DAAoC;AAEpC,iGAAiG;AACjG,MAAM,sBAAsB,GAAG,eAAe,CAAC;AAE/C,MAAM,QAAQ;CAAG;AAEjB,MAAM,cAAc,GAAG;IACrB,iBAAiB,EAAE,IAAI;IACvB,iBAAiB,EAAE,IAAI;IACvB,qBAAqB,EAAE,KAAK;IAC5B,aAAa,EAAE,IAAI;IACnB,SAAS,EAAE,KAAK;IAChB,YAAY,EAAE,KAAK;IACnB,WAAW,EAAE,KAAK;IAClB,SAAS,EAAE,KAAK;IAChB,eAAe,EAAE,CAAC;IAClB,eAAe,EAAE,CAAC;IAClB,SAAS,EAAE,KAAK;CACjB,CAAC;AAEF;;;;;;;;;;;;;;GAcG;AAEH;;;;;;;;;;;;;;;GAeG;AAEH;;;;;;;;;;;GAWG;AAEH;;;;;;;GAOG;AAEH;;;;;;GAMG;AAEH,SAAgB,OAAO,CAAC,KAAK,EAAE,OAAO,GAAG,EAAE;IACzC,KAAK,GAAG,IAAA,4BAAY,EAAC,KAAK,CAAC,CAAC;IAC5B,OAAO,GAAG,EAAE,GAAG,cAAc,EAAE,GAAG,OAAO,EAAE,CAAC;IAC5C,OAAO,CAAC,MAAM,GAAG,CAAC,OAAO,CAAC,SAAS,CAAC;IACpC,OAAO,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAE3B,IAAI,WAAW,GAAG,EAAE,CAAC;IAErB,IAAI,MAAM,GAAG;QACX,SAAS,EAAE,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK;QACzC,IAAI,EAAE,EAAE;QACR,OAAO,EAAE,EAAE;KACZ,CAAC;IAEF,IAAI,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC;IACjC,IAAI,YAAY,GAAG,SAAS,CAAC;IAC7B,IAAI,YAAY,GAAG,EAAE,CAAC;IAEtB,IAAI,QAAQ,GAAG,IAAI,QAAQ,EAAE,CAAC;IAE9B,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE;QAC7B,MAAM,IAAI,SAAS,CAAC,8BAA8B,CAAC,CAAC;KACrD;IAED,IAAA,mBAAS,EAAC,MAAM,EAAE,sBAAsB,EAAE,OAAO,CAAC,CAAC;IAEnD,IAAI,IAAI,GAAG,KAAK,CAAC,OAAO,CAAC,YAAY,EAAE,MAAM,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;IAE7D,IAAA,mBAAS,EAAC,MAAM,EAAE,eAAe,EAAE,OAAO,CAAC,CAAC;IAE5C,IAAI,IAAI,CAAC,CAAC,CAAC;QAAE,IAAI,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC;IAE1D,KAAK,IAAI,GAAG,IAAI,IAAI,EAAE;QACpB,oBAAoB;QACpB,IAAI,QAAQ,GAAG,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;QAChC,IAAI,SAAS,GAAG,QAAQ,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;QAChE,IAAI,SAAS,GAAG,QAAQ,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,QAAQ,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QAEvE,IAAI,gBAAgB,GAAG,SAAS,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;QAErE,IAAI,gBAAgB,KAAK,WAAW,EAAE;YACpC,IAAI,OAAO,GAAG,SAAS,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;YACtC,IAAI,OAAO,KAAK,CAAC,CAAC;gBAAE,OAAO,GAAG,SAAS,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;YACtD,IAAI,OAAO,GAAG,CAAC,EAAE;gBACf,oCAAoC;gBACpC,gCAAgC;gBAEhC,IAAI,KAAK,GAAG,SAAS,CAAC,SAAS,CAAC,CAAC,EAAE,OAAO,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC;gBAC9D,IAAA,iCAAuB,EAAC,YAAY,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;gBAE1D,QAAQ,CAAC,SAAS,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;gBAC9B,IAAI,KAAK,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,EAAE;oBAC9C,gBAAgB,GAAG,WAAW,CAAC;iBAChC;qBAAM,IACL,KAAK,CAAC,CAAC,CAAC;oBACR,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAC1D;oBACA,gBAAgB,GAAG,QAAQ,CAAC;oBAC5B,QAAQ,CAAC,MAAM;wBACb,CAAC,QAAQ,CAAC,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,QAAQ,GAAG,CAAC,CAAC,CAAC;iBAChE;aACF;SACF;QAED,IAAI,gBAAgB,KAAK,QAAQ,EAAE;YACjC,IAAI,OAAO,CAAC,MAAM,EAAE;gBAClB,IAAA,yBAAe,EAAC,QAAQ,CAAC,CAAC;gBAC1B,yFAAyF;gBACzF,IAAI,SAAS,CAAC,KAAK,CAAC,UAAU,CAAC,EAAE;oBAC/B,kBAAkB;oBAClB,QAAQ,CAAC,MAAM;wBACb,CAAC,QAAQ,CAAC,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,QAAQ,GAAG,CAAC,CAAC,CAAC;oBAE/D,IAAA,yBAAe,EAAC,QAAQ,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;iBAC9C;qBAAM;oBACL,IAAA,wBAAc,EAAC,QAAQ,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;iBAC7C;gBACD,YAAY,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;gBACpC,QAAQ,GAAG,IAAI,QAAQ,EAAE,CAAC;aAC3B;YACD,SAAS;SACV;aAAM,IAAI,gBAAgB,KAAK,WAAW,EAAE;YAC3C,IAAI,OAAO,CAAC,MAAM,EAAE;gBAClB,IAAA,yBAAe,EAAC,QAAQ,CAAC,CAAC;gBAC1B,IAAA,wBAAc,EAAC,QAAQ,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;gBAC5C,YAAY,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;gBACpC,QAAQ,GAAG,IAAI,QAAQ,EAAE,CAAC;aAC3B;YACD,SAAS;SACV;QACD,IAAI,gBAAgB,KAAK,iBAAiB,EAAE;YAC1C,IAAI,OAAO,CAAC,MAAM,EAAE;gBAClB,IAAI,SAAS,CAAC,KAAK,CAAC,WAAW,CAAC,EAAE;oBAChC,YAAY;oBACZ,IAAA,kBAAQ,EAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;iBAC/B;gBACD,YAAY,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;gBACpC,QAAQ,GAAG,IAAI,QAAQ,EAAE,CAAC;aAC3B;YACD,SAAS;SACV;QAED,IAAI,gBAAgB,KAAK,OAAO,EAAE;YAChC,IAAI,WAAW,GAAG,YAAY,CAAC;YAC/B,IAAI,CAAC,WAAW,CAAC,QAAQ,EAAE;gBACzB,WAAW,CAAC,QAAQ,GAAG,EAAE,CAAC;aAC3B;YACD,YAAY,GAAG;gBACb,OAAO,EAAE,EAAE;gBACX,OAAO,EAAE,EAAE;gBACX,IAAI,EAAE,EAAE;gBACR,IAAI,EAAE,EAAE;gBACR,GAAG,EAAE,EAAE,EAAE,qDAAqD;aAC/D,CAAC;YACF,WAAW,CAAC,QAAQ,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;YACxC,YAAY,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;YAC/B,WAAW,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;YAC/B,YAAY,CAAC,KAAK,GAAG,SAAS,CAAC;SAChC;aAAM,IAAI,gBAAgB,KAAK,UAAU,EAAE;YAC1C,YAAY,CAAC,QAAQ,GAAG,SAAS,CAAC;YAClC,IAAI,SAAS,CAAC,KAAK,CAAC,eAAe,CAAC,EAAE;gBACpC,YAAY,CAAC,IAAI,GAAG,IAAI,CAAC;aAC1B;SACF;aAAM,IAAI,gBAAgB,KAAK,SAAS,EAAE;YACzC,IAAI,SAAS,CAAC,KAAK,CAAC,eAAe,CAAC,EAAE;gBACpC,YAAY,CAAC,IAAI,GAAG,IAAI,CAAC;aAC1B;SACF;aAAM,IAAI,gBAAgB,KAAK,WAAW,EAAE;YAC3C,YAAY,CAAC,SAAS,GAAG,SAAS,CAAC;SACpC;aAAM,IAAI,gBAAgB,KAAK,QAAQ,EAAE;YACxC,QAAQ,CAAC,MAAM,GAAG,SAAS,CAAC;SAC7B;aAAM,IAAI,gBAAgB,KAAK,QAAQ,EAAE;YACxC,QAAQ,CAAC,MAAM,GAAG,SAAS,CAAC;SAC7B;aAAM,IAAI,gBAAgB,KAAK,QAAQ,EAAE;YACxC,QAAQ,CAAC,MAAM,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACrC;aAAM,IAAI,gBAAgB,KAAK,OAAO,EAAE;YACvC,QAAQ,CAAC,KAAK,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACpC;aAAM,IAAI,gBAAgB,KAAK,QAAQ,EAAE;YACxC,QAAQ,CAAC,MAAM,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACrC;aAAM,IAAI,gBAAgB,KAAK,OAAO,EAAE;YACvC,QAAQ,CAAC,KAAK,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACpC;aAAM,IAAI,gBAAgB,KAAK,SAAS,EAAE;YACzC,QAAQ,CAAC,QAAQ,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACvC;aAAM,IAAI,gBAAgB,KAAK,SAAS,EAAE;YACzC,QAAQ,CAAC,OAAO,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACtC;aAAM,IAAI,gBAAgB,KAAK,SAAS,EAAE;YACzC,QAAQ,CAAC,OAAO,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACtC;aAAM,IAAI,gBAAgB,KAAK,MAAM,EAAE;YACtC,QAAQ,CAAC,IAAI,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACnC;aAAM,IAAI,gBAAgB,KAAK,MAAM,EAAE;YACtC,QAAQ,CAAC,IAAI,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACnC;aAAM,IAAI,gBAAgB,KAAK,MAAM,EAAE;YACtC,QAAQ,CAAC,IAAI,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACnC;aAAM,IAAI,gBAAgB,KAAK,MAAM,EAAE;YACtC,QAAQ,CAAC,IAAI,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACnC;aAAM,IAAI,gBAAgB,KAAK,QAAQ,EAAE;YACxC,QAAQ,CAAC,MAAM,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACrC;aAAM,IACL,gBAAgB,KAAK,mBAAmB;YACxC,gBAAgB,KAAK,OAAO,EAC5B;YACA,IAAI,CAAC,QAAQ,CAAC,gBAAgB,EAAE;gBAC9B,QAAQ,CAAC,gBAAgB,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;aAC/C;SACF;aAAM,IAAI,gBAAgB,KAAK,iBAAiB,EAAE;YACjD,IAAI,CAAC,QAAQ,CAAC,KAAK,EAAE;gBACnB,YAAY,CAAC,KAAK,GAAG,SAAS,CAAC,OAAO,CAAC,eAAe,EAAE,EAAE,CAAC,CAAC;aAC7D;SACF;aAAM,IAAI,gBAAgB,KAAK,SAAS,EAAE;YACzC,4BAA4B;YAC5B,YAAY,CAAC,cAAc,GAAG,CAAC,CAAC;YAChC,IAAI,CAAC,QAAQ,CAAC,cAAc,EAAE;gBAC5B,QAAQ,CAAC,cAAc,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;aAC7C;SACF;aAAM,IAAI,gBAAgB,KAAK,iBAAiB,EAAE;YACjD,4BAA4B;YAC5B,gEAAgE;YAChE,2FAA2F;YAC3F,wDAAwD;YACxD,2EAA2E;YAC3E,qEAAqE;SACtE;aAAM,IAAI,gBAAgB,KAAK,SAAS,EAAE;YACzC,YAAY,CAAC,OAAO,CAAC,OAAO,GAAG,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;SACxE;aAAM,IAAI,gBAAgB,KAAK,QAAQ,EAAE;YACxC,YAAY,CAAC,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;SACvE;aAAM,IAAI,gBAAgB,KAAK,SAAS,EAAE;YACzC,YAAY,CAAC,OAAO,CAAC,OAAO,GAAG,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;SACxE;aAAM,IAAI,gBAAgB,KAAK,SAAS,EAAE;YACzC,YAAY,CAAC,OAAO,CAAC,OAAO,GAAG,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;SACxE;aAAM,IAAI,gBAAgB,KAAK,QAAQ,EAAE;YACxC,YAAY,CAAC,OAAO,CAAC,MAAM,GAAG,IAAA,6BAAmB,EAC/C,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CACxC,CAAC;SACH;aAAM,IAAI,gBAAgB,KAAK,OAAO,EAAE;YACvC,YAAY,CAAC,OAAO,CAAC,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;SACtE;aAAM,IAAI,gBAAgB,KAAK,QAAQ,EAAE;YACxC,YAAY,CAAC,OAAO,CAAC,MAAM,GAAG,IAAA,6BAAmB,EAC/C,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CACxC,CAAC;SACH;aAAM,IAAI,gBAAgB,KAAK,OAAO,EAAE;YACvC,YAAY,CAAC,OAAO,CAAC,KAAK,GAAG,IAAA,6BAAmB,EAC9C,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CACxC,CAAC;SACH;aAAM,IAAI,gBAAgB,KAAK,MAAM,EAAE;YACtC,YAAY,CAAC,OAAO,CAAC,IAAI,GAAG,IAAA,6BAAmB,EAC7C,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CACxC,CAAC;SACH;aAAM,IAAI,gBAAgB,KAAK,KAAK,EAAE;YACrC,YAAY,CAAC,OAAO,CAAC,GAAG,GAAG,IAAA,6BAAmB,EAC5C,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CACxC,CAAC;SACH;aAAM,IAAI,gBAAgB,KAAK,KAAK,EAAE;YACrC,YAAY,CAAC,OAAO,CAAC,GAAG,GAAG,IAAA,6BAAmB,EAC5C,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CACxC,CAAC;SACH;aAAM,IAAI,gBAAgB,KAAK,UAAU,EAAE;YAC1C,IAAI,YAAY,CAAC,OAAO,EAAE;gBACxB,YAAY,CAAC,OAAO,CAAC,OAAO,GAAG,SAAS,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;aACxE;SACF;aAAM,IAAI,gBAAgB,KAAK,MAAM,EAAE;YACtC,QAAQ,CAAC,IAAI,GAAG,SAAS,CAAC,IAAI,EAAE,CAAC;YACjC,QAAQ,CAAC,SAAS,GAAG,MAAM,CAAC,SAAS,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC;YAC3D,QAAQ,CAAC,UAAU,GAAG,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;SAC1D;aAAM,IAAI,gBAAgB,KAAK,eAAe,EAAE;YAC/C,QAAQ,CAAC,SAAS,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC;SACxC;aAAM,IAAI,IAAA,+BAAS,EAAC,gBAAgB,CAAC,EAAE;YACtC,QAAQ,CAAC,IAAA,2CAAqB,EAAC,gBAAgB,CAAC,CAAC,GAAG,SAAS,CAAC;SAC/D;aAAM,IAAI,gBAAgB,KAAK,mBAAmB,EAAE;YACnD,QAAQ,CAAC,iBAAiB,GAAG,SAAS,CAAC;SACxC;aAAM,IAAI,gBAAgB,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE;YAC9C,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,gBAAgB,CAAC,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;gBACrE,YAAY,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,SAAS,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;aACrE;SACF;aAAM,IAAI,gBAAgB,KAAK,KAAK,EAAE;YACrC,YAAY,GAAG,YAAY,CAAC,GAAG,EAAE,CAAC;SACnC;QAED,IACE,YAAY;YACZ,YAAY,CAAC,IAAI;YACjB,YAAY,CAAC,IAAI;YACjB,gBAAgB,CAAC,KAAK,CAAC,OAAO,CAAC,iBAAiB,CAAC,EACjD;YACA,IAAI,KAAK,GAAG,SAAS,CAAC,IAAI,EAAE,CAAC;YAC7B,IAAI,MAAM,EAAE,KAAK,CAAC;YAClB,IAAI,SAAS,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE;gBAC7B,KAAK,GAAG,OAAO,CAAC,qBAAqB;oBACnC,CAAC,CAAC,gBAAgB,CAAC,SAAS,CAAC,CAAC,CAAC;oBAC/B,CAAC,CAAC,SAAS,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;gBAC3B,MAAM,GAAG,YAAY,CAAC,IAAI,CAAC;aAC5B;iBAAM;gBACL,KAAK,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,SAAS,CAAC;gBACjE,MAAM,GAAG,YAAY,CAAC,IAAI,CAAC;aAC5B;YAED,IAAI,OAAO,CAAC,aAAa,EAAE;gBACzB,KAAK,GAAG,IAAA,4BAAW,EAAC,KAAK,CAAC,CAAC;aAC5B;YACD,IAAI,MAAM,CAAC,KAAK,CAAC,EAAE;gBACjB,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE;oBACjC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC;iBACjC;gBACD,MAAM,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;aAC3B;iBAAM;gBACL,MAAM,CAAC,KAAK,CAAC,GAAG,KAAK,CAAC;aACvB;SACF;KACF;IAED,IAAA,mBAAS,EAAC,MAAM,EAAE,kBAAkB,EAAE,OAAO,CAAC,CAAC;IAE/C,IAAA,wBAAc,EAAC,WAAW,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;IAE7C,IAAA,mBAAS,EAAC,MAAM,EAAE,YAAY,EAAE,OAAO,CAAC,CAAC;IAEzC;;;;MAIE;IACF,MAAM,CAAC,OAAO,GAAG,SAAS,CAAC,QAAQ,CAAC;IACpC,MAAM,CAAC,OAAO,GAAG,WAAW,CAAC;IAE7B,OAAO,MAAM,CAAC;AAChB,CAAC;AA5RD,0BA4RC"}
@@ -0,0 +1,2 @@
1
+ export default function convertToFloatArray(stringArray: any): number[];
2
+ //# sourceMappingURL=convertToFloatArray.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"convertToFloatArray.d.ts","sourceRoot":"","sources":["../src/convertToFloatArray.js"],"names":[],"mappings":"AAAA,wEAMC"}
@@ -0,0 +1,11 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ function convertToFloatArray(stringArray) {
4
+ let floatArray = [];
5
+ for (let i = 0; i < stringArray.length; i++) {
6
+ floatArray.push(Number(stringArray[i]));
7
+ }
8
+ return floatArray;
9
+ }
10
+ exports.default = convertToFloatArray;
11
+ //# sourceMappingURL=convertToFloatArray.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"convertToFloatArray.js","sourceRoot":"","sources":["../src/convertToFloatArray.js"],"names":[],"mappings":";;AAAA,SAAwB,mBAAmB,CAAC,WAAW;IACrD,IAAI,UAAU,GAAG,EAAE,CAAC;IACpB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QAC3C,UAAU,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;KACzC;IACD,OAAO,UAAU,CAAC;AACpB,CAAC;AAND,sCAMC"}
@@ -0,0 +1,29 @@
1
+ /**
2
+ *
3
+ * @typedef {object} CreateTreeOptions
4
+ * @property {boolean} [flatten=false]
5
+ */
6
+ /**
7
+ *
8
+ * @typedef {object} Tree
9
+ * @property {string} title
10
+ * @property {string} jcamp
11
+ * @property {Tree[]} [children]
12
+ */
13
+ /**
14
+ * Parse the jcamp to extract the structure as a tree.
15
+ *
16
+ * @param {string|ArrayBuffer|Uint8Array} jcamp
17
+ * @param {CreateTreeOptions} [options={}]
18
+ * @returns {Tree[]}
19
+ */
20
+ export function createTree(jcamp: string | ArrayBuffer | Uint8Array, options?: CreateTreeOptions | undefined): Tree[];
21
+ export type CreateTreeOptions = {
22
+ flatten?: boolean | undefined;
23
+ };
24
+ export type Tree = {
25
+ title: string;
26
+ jcamp: string;
27
+ children?: Tree[] | undefined;
28
+ };
29
+ //# sourceMappingURL=createTree.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"createTree.d.ts","sourceRoot":"","sources":["../src/createTree.js"],"names":[],"mappings":"AAEA;;;;GAIG;AAEH;;;;;;GAMG;AAEH;;;;;;GAMG;AACH,kCAJW,MAAM,GAAC,WAAW,GAAC,UAAU,4CAE3B,IAAI,EAAE,CA2ElB;;;;;WArFa,MAAM;WACN,MAAM"}
@@ -0,0 +1,98 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.createTree = void 0;
4
+ const ensure_string_1 = require("ensure-string");
5
+ /**
6
+ *
7
+ * @typedef {object} CreateTreeOptions
8
+ * @property {boolean} [flatten=false]
9
+ */
10
+ /**
11
+ *
12
+ * @typedef {object} Tree
13
+ * @property {string} title
14
+ * @property {string} jcamp
15
+ * @property {Tree[]} [children]
16
+ */
17
+ /**
18
+ * Parse the jcamp to extract the structure as a tree.
19
+ *
20
+ * @param {string|ArrayBuffer|Uint8Array} jcamp
21
+ * @param {CreateTreeOptions} [options={}]
22
+ * @returns {Tree[]}
23
+ */
24
+ function createTree(jcamp, options = {}) {
25
+ jcamp = (0, ensure_string_1.ensureString)(jcamp);
26
+ const { flatten = false } = options;
27
+ if (typeof jcamp !== 'string') {
28
+ throw new TypeError('the JCAMP should be a string');
29
+ }
30
+ let lines = jcamp.split(/[\r\n]+/);
31
+ let flat = [];
32
+ let stack = [];
33
+ let result = [];
34
+ let current;
35
+ let ntupleLevel = 0;
36
+ let spaces = jcamp.includes('## ');
37
+ for (let i = 0; i < lines.length; i++) {
38
+ let line = lines[i];
39
+ let labelLine = spaces ? line.replace(/ /g, '') : line;
40
+ if (labelLine.substring(0, 9) === '##NTUPLES') {
41
+ ntupleLevel++;
42
+ }
43
+ if (labelLine.substring(0, 7) === '##TITLE') {
44
+ let title = [labelLine.substring(8).trim()];
45
+ for (let j = i + 1; j < lines.length; j++) {
46
+ if (lines[j].startsWith('##')) {
47
+ break;
48
+ }
49
+ else {
50
+ title.push(lines[j].trim());
51
+ }
52
+ }
53
+ stack.push({
54
+ title: title.join('\n'),
55
+ jcamp: `${line}\n`,
56
+ children: [],
57
+ });
58
+ current = stack[stack.length - 1];
59
+ flat.push(current);
60
+ }
61
+ else if (labelLine.substring(0, 5) === '##END' && ntupleLevel === 0) {
62
+ current.jcamp += `${line}\n`;
63
+ let finished = stack.pop();
64
+ if (stack.length !== 0) {
65
+ current = stack[stack.length - 1];
66
+ current.children.push(finished);
67
+ }
68
+ else {
69
+ current = undefined;
70
+ result.push(finished);
71
+ }
72
+ }
73
+ else if (current && current.jcamp) {
74
+ current.jcamp += `${line}\n`;
75
+ let match = labelLine.match(/^##(.*?)=(.+)/);
76
+ if (match) {
77
+ let canonicDataLabel = match[1].replace(/[ _-]/g, '').toUpperCase();
78
+ if (canonicDataLabel === 'DATATYPE') {
79
+ current.dataType = match[2].trim();
80
+ }
81
+ }
82
+ }
83
+ if (labelLine.substring(0, 5) === '##END' && ntupleLevel > 0) {
84
+ ntupleLevel--;
85
+ }
86
+ }
87
+ if (flatten) {
88
+ flat.forEach((entry) => {
89
+ entry.children = undefined;
90
+ });
91
+ return flat;
92
+ }
93
+ else {
94
+ return result;
95
+ }
96
+ }
97
+ exports.createTree = createTree;
98
+ //# sourceMappingURL=createTree.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"createTree.js","sourceRoot":"","sources":["../src/createTree.js"],"names":[],"mappings":";;;AAAA,iDAA6C;AAE7C;;;;GAIG;AAEH;;;;;;GAMG;AAEH;;;;;;GAMG;AACH,SAAgB,UAAU,CAAC,KAAK,EAAE,OAAO,GAAG,EAAE;IAC5C,KAAK,GAAG,IAAA,4BAAY,EAAC,KAAK,CAAC,CAAC;IAC5B,MAAM,EAAE,OAAO,GAAG,KAAK,EAAE,GAAG,OAAO,CAAC;IACpC,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE;QAC7B,MAAM,IAAI,SAAS,CAAC,8BAA8B,CAAC,CAAC;KACrD;IAED,IAAI,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;IACnC,IAAI,IAAI,GAAG,EAAE,CAAC;IACd,IAAI,KAAK,GAAG,EAAE,CAAC;IACf,IAAI,MAAM,GAAG,EAAE,CAAC;IAChB,IAAI,OAAO,CAAC;IACZ,IAAI,WAAW,GAAG,CAAC,CAAC;IAEpB,IAAI,MAAM,GAAG,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;IAEnC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACrC,IAAI,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QACpB,IAAI,SAAS,GAAG,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QAEvD,IAAI,SAAS,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAC,KAAK,WAAW,EAAE;YAC7C,WAAW,EAAE,CAAC;SACf;QAED,IAAI,SAAS,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAC,KAAK,SAAS,EAAE;YAC3C,IAAI,KAAK,GAAG,CAAC,SAAS,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;YAC5C,KAAK,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;gBACzC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE;oBAC7B,MAAM;iBACP;qBAAM;oBACL,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;iBAC7B;aACF;YACD,KAAK,CAAC,IAAI,CAAC;gBACT,KAAK,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC;gBACvB,KAAK,EAAE,GAAG,IAAI,IAAI;gBAClB,QAAQ,EAAE,EAAE;aACb,CAAC,CAAC;YACH,OAAO,GAAG,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;YAClC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;SACpB;aAAM,IAAI,SAAS,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAC,KAAK,OAAO,IAAI,WAAW,KAAK,CAAC,EAAE;YACrE,OAAO,CAAC,KAAK,IAAI,GAAG,IAAI,IAAI,CAAC;YAC7B,IAAI,QAAQ,GAAG,KAAK,CAAC,GAAG,EAAE,CAAC;YAC3B,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE;gBACtB,OAAO,GAAG,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;gBAClC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;aACjC;iBAAM;gBACL,OAAO,GAAG,SAAS,CAAC;gBACpB,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;aACvB;SACF;aAAM,IAAI,OAAO,IAAI,OAAO,CAAC,KAAK,EAAE;YACnC,OAAO,CAAC,KAAK,IAAI,GAAG,IAAI,IAAI,CAAC;YAC7B,IAAI,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,eAAe,CAAC,CAAC;YAC7C,IAAI,KAAK,EAAE;gBACT,IAAI,gBAAgB,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;gBACpE,IAAI,gBAAgB,KAAK,UAAU,EAAE;oBACnC,OAAO,CAAC,QAAQ,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;iBACpC;aACF;SACF;QAED,IAAI,SAAS,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAC,KAAK,OAAO,IAAI,WAAW,GAAG,CAAC,EAAE;YAC5D,WAAW,EAAE,CAAC;SACf;KACF;IACD,IAAI,OAAO,EAAE;QACX,IAAI,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;YACrB,KAAK,CAAC,QAAQ,GAAG,SAAS,CAAC;QAC7B,CAAC,CAAC,CAAC;QACH,OAAO,IAAI,CAAC;KACb;SAAM;QACL,OAAO,MAAM,CAAC;KACf;AACH,CAAC;AAzED,gCAyEC"}
package/lib/index.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ export { createTree } from "./createTree";
2
+ export { convert } from "./convert";
3
+ //# sourceMappingURL=index.d.ts.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.js"],"names":[],"mappings":""}