jbrowse-plugin-protein3d 0.8.1 → 0.8.2

package/dist/LaunchProteinView/components/LaunchProteinViewDialog.js

@@ -14,7 +14,7 @@ export default function LaunchProteinViewDialog({ handleClose, feature, model, }
     const [alignmentAlgorithm, setAlignmentAlgorithm] = useLocalStorage('jbrowse-protein3d-alignment-algorithm', DEFAULT_ALIGNMENT_ALGORITHM);
     const session = getSession(model);
     const view = getContainingView(model);
-    return (React.createElement(Dialog, { maxWidth: "xl", title: "Launch protein view", titleNode: React.createElement(React.Fragment, null,
+    return (React.createElement(Dialog, { "data-testid": "launch-protein-view-dialog", maxWidth: "xl", title: "Launch protein view", titleNode: React.createElement(React.Fragment, null,
             "Launch protein view ",
             React.createElement(HelpButton, null)), open: true, onClose: handleClose },
         React.createElement(Tabs, { value: choice, onChange: (_, val) => {

package/dist/LaunchProteinView/components/ProteinViewActions.js

@@ -95,8 +95,8 @@ export default function ProteinViewActions({ handleClose, uniprotId, userSelecte
             } }, "Cancel"),
         showMissingReasons ? (React.createElement(Typography, { variant: "body2", color: "error", sx: { mr: 2 } }, missingReasons.join('. '))) : null,
         React.createElement(ButtonGroup, { variant: "contained", color: "primary", size: "small" },
-            React.createElement(Button, { disabled: !canLaunch, onClick: handleLaunch3DView }, "Launch"),
-            React.createElement(Button, { disabled: !canLaunch, onClick: () => {
+            React.createElement(Button, { "data-testid": "protein-launch-button", disabled: !canLaunch, onClick: handleLaunch3DView }, "Launch"),
+            React.createElement(Button, { "data-testid": "protein-launch-options-button", disabled: !canLaunch, onClick: () => {
                     setDialogOpen(true);
                 }, "aria-label": "More launch options" },
                 React.createElement(ArrowDropDownIcon, null))),

package/dist/ProteinView/components/ProteinAlignment.js

@@ -10,7 +10,7 @@ import ResidueValueTrack from './ResidueValueTrack';
 import SplitString, { AlignmentHighlights } from './SplitString';
 import { uniprotEntryUrl } from '../../LaunchProteinView/utils/structureUrls';
 import ExternalLink from '../../components/ExternalLink';
-import { structureAlignedSeq, transcriptAlignedSeq, } from '../../mappings';
+import { structureAlignedSeq, transcriptAlignedSeq } from '../../mappings';
 import { largeJumpScrollTarget, offScreenCenterTarget } from '../autoScroll';
 import { CHAR_WIDTH, LABEL_WIDTH, ROW_HEIGHT } from '../constants';
 import useProteinFeatureTrackData from '../hooks/useProteinFeatureTrackData';

package/dist/ProteinView/components/ProteinView.js

@@ -29,7 +29,7 @@ const ProteinViewContainer = observer(function ProteinViewContainer({ model, par
     return (React.createElement("div", { style: { background: '#ccc' }, "data-testid": ready ? 'protein-view-ready' : 'protein-view-loading' },
         error ? React.createElement(ErrorMessage, { error: error }) : null,
         loading ? (React.createElement(LoadingEllipses, { message: "Loading protein viewer" })) : (React.createElement(ProteinViewHeader, { model: model })),
-        React.createElement("div", { ref: parentRef, style: {
+        React.createElement("div", { ref: parentRef, "data-testid": "protein-view-molstar", style: {
                 position: 'relative',
                 width,
                 height,

package/dist/ProteinView/model.d.ts

@@ -38,7 +38,9 @@ declare function stateModelFactory(): import("@jbrowse/mobx-state-tree").IModelT
             end: number;
         } | undefined;
         hoverPosition: {
-            structureSeqPos?: number;
+            structureSeqPos? /**
+             * #action
+             */: number;
             code?: string;
             chain?: string;
             source: "structure" | "genome";
@@ -780,7 +782,9 @@ declare function stateModelFactory(): import("@jbrowse/mobx-state-tree").IModelT
             end: number;
         } | undefined;
         hoverPosition: {
-            structureSeqPos?: number;
+            structureSeqPos? /**
+             * #action
+             */: number;
             code?: string;
             chain?: string;
             source: "structure" | "genome";
@@ -1414,7 +1418,9 @@ declare function stateModelFactory(): import("@jbrowse/mobx-state-tree").IModelT
             end: number;
         } | undefined;
         hoverPosition: {
-            structureSeqPos?: number;
+            structureSeqPos? /**
+             * #action
+             */: number;
             code?: string;
             chain?: string;
             source: "structure" | "genome";

package/dist/ProteinView/structureFormat.js

@@ -31,9 +31,7 @@ export function structureFileExtension(nameOrUrl) {
  * hand out `.cif`).
  */
 export function structureFormatFromName(nameOrUrl) {
-    return PDB_EXTENSIONS.has(structureFileExtension(nameOrUrl))
-        ? 'pdb'
-        : 'mmcif';
+    return PDB_EXTENSIONS.has(structureFileExtension(nameOrUrl)) ? 'pdb' : 'mmcif';
 }
 /** Whether a URL points at a binary-encoded structure, which molstar must be
  * told to download as bytes rather than text. */

package/dist/ProteinView/structureModel.js

@@ -13,7 +13,7 @@ import subscribeMolstarInteraction from './subscribeMolstarInteraction';
 import { genomeHoverToTranscriptPos } from './util';
 import { getUniprotIdFromAlphaFoldTarget, resolveStructureUrl, } from '../LaunchProteinView/utils/structureUrls';
 import { stripStopCodon } from '../LaunchProteinView/utils/util';
-import { alignmentLength, genomeToTranscriptSeqMapping, } from '../mappings';
+import { alignmentLength, genomeToTranscriptSeqMapping } from '../mappings';
 import { makeLabelSeqIdIndex, rangeToLabelSeqIds, toLabelSeqIds, } from './extractStructureSequences';
 const Structure = types
     .model({