jbrowse-plugin-protein3d 0.4.13 → 0.5.0

package/src/ProteinView/util.ts

@@ -1,7 +1,3 @@
-import loadMolstar from './loadMolstar'
-
-import type { Structure } from 'molstar/lib/mol-model/structure'
-
 interface HoveredState {
   hoverPosition: {
     coord: number
@@ -21,27 +17,6 @@ export function checkHovered(hovered: unknown): hovered is HoveredState {
   )
 }
 
-export async function getMolstarStructureSelection({
-  structure,
-  selectedResidue,
-}: {
-  structure: Structure
-  selectedResidue: number
-}) {
-  const { Script } = await loadMolstar()
-  return Script.getStructureSelection(
-    Q =>
-      Q.struct.generator.atomGroups({
-        'residue-test': Q.core.rel.eq([
-          Q.struct.atomProperty.macromolecular.label_seq_id(),
-          selectedResidue,
-        ]),
-        'group-by': Q.struct.atomProperty.macromolecular.residueKey(),
-      }),
-    structure,
-  )
-}
-
 export function invertMap(arg: Record<number, number>): Record<number, number> {
   return Object.fromEntries(Object.entries(arg).map(([a, b]) => [b, +a]))
 }

package/src/version.ts

@@ -1 +1 @@
-export const version = '0.4.13'
+export const version = '0.5.0'

package/dist/ProteinView/highlightResidueRange.d.ts

@@ -1,14 +0,0 @@
-import type { Structure } from 'molstar/lib/mol-model/structure';
-import type { PluginContext } from 'molstar/lib/mol-plugin/context';
-export default function highlightResidueRange({ structure, startResidue, endResidue, plugin, }: {
-    structure: Structure;
-    startResidue: number;
-    endResidue: number;
-    plugin: PluginContext;
-}): Promise<void>;
-export declare function selectResidueRange({ structure, startResidue, endResidue, plugin, }: {
-    structure: Structure;
-    startResidue: number;
-    endResidue: number;
-    plugin: PluginContext;
-}): Promise<void>;

package/dist/ProteinView/highlightResidueRange.js

@@ -1,19 +0,0 @@
-import { applyLociInteractivity } from './applyLociInteractivity';
-export default async function highlightResidueRange({ structure, startResidue, endResidue, plugin, }) {
-    await applyLociInteractivity({
-        structure,
-        startResidue,
-        endResidue,
-        plugin,
-        mode: 'highlight',
-    });
-}
-export async function selectResidueRange({ structure, startResidue, endResidue, plugin, }) {
-    await applyLociInteractivity({
-        structure,
-        startResidue,
-        endResidue,
-        plugin,
-        mode: 'select',
-    });
-}

package/src/ProteinView/highlightResidueRange.ts

@@ -1,44 +0,0 @@
-import { applyLociInteractivity } from './applyLociInteractivity'
-
-import type { Structure } from 'molstar/lib/mol-model/structure'
-import type { PluginContext } from 'molstar/lib/mol-plugin/context'
-
-export default async function highlightResidueRange({
-  structure,
-  startResidue,
-  endResidue,
-  plugin,
-}: {
-  structure: Structure
-  startResidue: number
-  endResidue: number
-  plugin: PluginContext
-}) {
-  await applyLociInteractivity({
-    structure,
-    startResidue,
-    endResidue,
-    plugin,
-    mode: 'highlight',
-  })
-}
-
-export async function selectResidueRange({
-  structure,
-  startResidue,
-  endResidue,
-  plugin,
-}: {
-  structure: Structure
-  startResidue: number
-  endResidue: number
-  plugin: PluginContext
-}) {
-  await applyLociInteractivity({
-    structure,
-    startResidue,
-    endResidue,
-    plugin,
-    mode: 'select',
-  })
-}