npm - jbrowse-plugin-protein3d - Versions diffs - 0.3.1 → 0.3.3 - Mend

jbrowse-plugin-protein3d 0.3.1 → 0.3.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (146) hide show

package/dist/AddHighlightModel/ProteinToGenomeHighlightInner.d.ts CHANGED Viewed

@@ -1,8 +1,8 @@
 import React from 'react';
 import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
 type HighlightField = 'clickGenomeHighlights' | 'hoverGenomeHighlights';
-export default function ProteinToGenomeHighlightInner({ model, field, }: {
+declare const ProteinToGenomeHighlightInner: ({ model, field, }: {
     model: LinearGenomeViewModel;
     field: HighlightField;
-}): React.JSX.Element | null;
-export {};
+}) => React.JSX.Element | null;
+export default ProteinToGenomeHighlightInner;

package/dist/AddHighlightModel/ProteinToGenomeHighlightInner.js CHANGED Viewed

@@ -1,12 +1,16 @@
 import React from 'react';
 import { getSession } from '@jbrowse/core/util';
+import { observer } from 'mobx-react';
 import Highlight from './Highlight';
-export default function ProteinToGenomeHighlightInner({ model, field, }) {
+const ProteinToGenomeHighlightInner = observer(function ProteinToGenomeHighlightInner({ model, field, }) {
     const { assemblyManager, views } = getSession(model);
     const { assemblyNames } = model;
     const proteinView = views.find(f => f.type === 'ProteinView');
     const assemblyName = assemblyNames[0];
-    const assembly = assemblyManager.get(assemblyName);
-    return assembly ? (React.createElement(React.Fragment, null, proteinView?.structures.map((structure, idx) => structure[field].map((r, idx2) => (React.createElement(Highlight, { key: `${r.refName}-${r.start}-${r.end}-${idx}-${idx2}`, start: r.start, end: r.end, refName: r.refName, assemblyName: assemblyName, model: model })))))) : null;
-}
+    const assembly = assemblyName
+        ? assemblyManager.get(assemblyName)
+        : undefined;
+    return assembly && assemblyName ? (React.createElement(React.Fragment, null, proteinView?.structures.map((structure, idx) => structure[field].map((r, idx2) => (React.createElement(Highlight, { key: `${r.refName}-${r.start}-${r.end}-${idx}-${idx2}`, start: r.start, end: r.end, refName: r.refName, assemblyName: assemblyName, model: model })))))) : null;
+});
+export default ProteinToGenomeHighlightInner;
 //# sourceMappingURL=ProteinToGenomeHighlightInner.js.map

package/dist/AddHighlightModel/ProteinToGenomeHighlightInner.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"ProteinToGenomeHighlightInner.js","sourceRoot":"","sources":["../../src/AddHighlightModel/ProteinToGenomeHighlightInner.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;~~AAE~~/C,OAAO,SAAS,MAAM,aAAa,CAAA;AAWnC,MAAM,~~CAAC~~,~~OAAO~~,~~UAAU~~,6BAA6B,CAAC,~~EACpD~~,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,eAAe,EAAE,KAAK,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACpD,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC/B,MAAM,WAAW,GAAG,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,aAAa,CAE/C,CAAA;IACb,MAAM,YAAY,GAAG,aAAa,CAAC,CAAC,~~CAAE~~,CAAA;~~IACtC~~,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;~~IAClD~~,OAAO,QAAQ,CAAC,CAAC,CAAC,~~CAChB~~,0CACG,WAAW,EAAE,UAAU,CAAC,GAAG,CAC1B,CAAC,SAA6C,EAAE,GAAW,EAAE,EAAE,CAC7D,SAAS,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAS,EAAE,IAAY,EAAE,EAAE,CAAC,CAChD,oBAAC,SAAS,IACR,GAAG,EAAE,GAAG,CAAC,CAAC,OAAO,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,GAAG,IAAI,GAAG,IAAI,IAAI,EAAE,EACtD,KAAK,EAAE,CAAC,CAAC,KAAK,EACd,GAAG,EAAE,CAAC,CAAC,GAAG,EACV,OAAO,EAAE,CAAC,CAAC,OAAO,EAClB,YAAY,EAAE,YAAY,EAC1B,KAAK,EAAE,KAAK,GACZ,CACH,CAAC,CACL,CACA,CACJ,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC"}
1	+ {"version":3,"file":"ProteinToGenomeHighlightInner.js","sourceRoot":"","sources":["../../src/AddHighlightModel/ProteinToGenomeHighlightInner.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,SAAS,MAAM,aAAa,CAAA;AAWnC,MAAM,6BAA6B,GAAG,QAAQ,CAC5C,SAAS,6BAA6B,CAAC,EACrC,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,eAAe,EAAE,KAAK,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACpD,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC/B,MAAM,WAAW,GAAG,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,aAAa,CAE/C,CAAA;IACb,MAAM,YAAY,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IACrC,MAAM,QAAQ,GAAG,YAAY;QAC3B,CAAC,CAAC,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC;QACnC,CAAC,CAAC,SAAS,CAAA;IACb,OAAO,QAAQ,IAAI,YAAY,CAAC,CAAC,CAAC,CAChC,0CACG,WAAW,EAAE,UAAU,CAAC,GAAG,CAC1B,CAAC,SAA6C,EAAE,GAAW,EAAE,EAAE,CAC7D,SAAS,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAS,EAAE,IAAY,EAAE,EAAE,CAAC,CAChD,oBAAC,SAAS,IACR,GAAG,EAAE,GAAG,CAAC,CAAC,OAAO,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,GAAG,IAAI,GAAG,IAAI,IAAI,EAAE,EACtD,KAAK,EAAE,CAAC,CAAC,KAAK,EACd,GAAG,EAAE,CAAC,CAAC,GAAG,EACV,OAAO,EAAE,CAAC,CAAC,OAAO,EAClB,YAAY,EAAE,YAAY,EAC1B,KAAK,EAAE,KAAK,GACZ,CACH,CAAC,CACL,CACA,CACJ,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AAED,eAAe,6BAA6B,CAAA"}

package/dist/AddHighlightModel/ProteinToMsaHoverSync.js CHANGED Viewed

@@ -10,29 +10,21 @@ const ProteinToMsaHoverSync = observer(function ProteinToMsaHoverSync({ model, }
     const msaView = connectedMsaViewId
         ? views.find(f => f.id === connectedMsaViewId)
         : undefined;
-    // Sync protein hover to MSA
-    useEffect(() => {
-        if (!proteinView || !msaView?.setMouseoveredColumn) {
-            return;
-        }
-        const disposer = autorun(() => {
-            const structure = proteinView.structures[0];
-            if (structure) {
-                const pos = structure.structureSeqHoverPos;
-                msaView.setMouseoveredColumn?.(pos);
-            }
-        });
-        return () => {
-            disposer();
-        };
-        // eslint-disable-next-line react-hooks/exhaustive-deps
-    }, []);
-    // Sync MSA hover to protein
     useEffect(() => {
         if (!proteinView || !msaView) {
             return;
         }
-        const disposer = autorun(() => {
+        const disposers = [];
+        if (msaView.setMouseoveredColumn) {
+            disposers.push(autorun(() => {
+                const structure = proteinView.structures[0];
+                if (structure) {
+                    const pos = structure.structureSeqHoverPos;
+                    msaView.setMouseoveredColumn?.(pos);
+                }
+            }));
+        }
+        disposers.push(autorun(() => {
             const col = msaView.mouseoveredColumn;
             const structure = proteinView.structures[0];
             if (structure && col !== undefined) {
@@ -41,12 +33,13 @@ const ProteinToMsaHoverSync = observer(function ProteinToMsaHoverSync({ model, }
             else if (structure && col === undefined) {
                 structure.clearHighlightFromExternal();
             }
-        });
+        }));
         return () => {
-            disposer();
+            disposers.forEach(d => {
+                d();
+            });
         };
-        // eslint-disable-next-line react-hooks/exhaustive-deps
-    }, []);
+    }, [proteinView, msaView]);
     return null;
 });
 export default ProteinToMsaHoverSync;

package/dist/AddHighlightModel/ProteinToMsaHoverSync.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"ProteinToMsaHoverSync.js","sourceRoot":"","sources":["../../src/AddHighlightModel/ProteinToMsaHoverSync.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAEjC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAYrC,MAAM,qBAAqB,GAAG,QAAQ,CAAC,SAAS,qBAAqB,CAAC,EACpE,KAAK,GAGN;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAA;IAEzB,MAAM,WAAW,GAAG,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,aAAa,CAE/C,CAAA;IAEb,MAAM,kBAAkB,GAAG,WAAW,EAAE,kBAAkB,CAAA;IAC1D,MAAM,OAAO,GAAG,kBAAkB;QAChC,CAAC,CAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,kBAAkB,CAAyB;QACvE,CAAC,CAAC,SAAS,CAAA;IAEb,~~4BAA4B;IAC5B,~~SAAS,CAAC,GAAG,EAAE;QACb,IAAI,CAAC,WAAW,IAAI,CAAC,OAAO,EAAE,~~oBAAoB,EAAE,~~CAAC;~~YACnD~~,OAAM;QACR,CAAC;QAED,MAAM,~~QAAQ~~,~~GAAG~~,OAAO,CAAC,GAAG,EAAE;~~YAC5B~~,MAAM,SAAS,GAAG,WAAW,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;~~YAC3C~~,IAAI,SAAS,EAAE,CAAC;~~gBACd~~,MAAM,GAAG,GAAG,SAAS,CAAC,oBAAoB,CAAA;~~gBAC1C~~,OAAO,CAAC,oBAAoB,EAAE,CAAC,GAAG,CAAC,CAAA;~~YACrC~~,CAAC;~~QACH~~,CAAC,CAAC,~~CAAA;QAEF~~,~~OAAO,GAAG,EAAE;YACV,QAAQ,EAAE,~~CAAA;~~QACZ~~,CAAC~~,CAAA~~;~~QACD~~,~~uDAAuD;IACzD,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,4BAA4B;IAC5B,~~SAAS,CAAC,~~GAAG,EAAE;QACb,~~IAAI,~~CAAC~~,~~WAAW,IAAI,CAAC,~~OAAO,~~EAAE,~~CAAC~~;YAC7B~~,~~OAAM;QACR,CAAC;QAED,MAAM,QAAQ,~~GAAG,~~OAAO,CAAC,GAAG,~~EAAE;~~YAC5B~~,MAAM,GAAG,GAAG,OAAO,CAAC,iBAAiB,CAAA;YACrC,MAAM,SAAS,GAAG,WAAW,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YAC3C,IAAI,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;gBACnC,SAAS,CAAC,qBAAqB,CAAC,GAAG,CAAC,CAAA;YACtC,CAAC;iBAAM,IAAI,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;gBAC1C,SAAS,CAAC,0BAA0B,EAAE,CAAA;YACxC,CAAC;QACH,CAAC,CAAC,CAAA;~~QAEF~~,OAAO,GAAG,EAAE;YACV,~~QAAQ~~,EAAE,CAAA;~~QACZ~~,CAAC,CAAA;~~QACD~~,~~uDAAuD~~;~~IACzD~~,CAAC,EAAE,EAAE,CAAC,CAAA;~~IAEN~~,OAAO,IAAI,CAAA;AACb,CAAC,CAAC,CAAA;AAEF,eAAe,qBAAqB,CAAA"}
1	+ {"version":3,"file":"ProteinToMsaHoverSync.js","sourceRoot":"","sources":["../../src/AddHighlightModel/ProteinToMsaHoverSync.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAEjC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAYrC,MAAM,qBAAqB,GAAG,QAAQ,CAAC,SAAS,qBAAqB,CAAC,EACpE,KAAK,GAGN;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,KAAK,EAAE,GAAG,OAAO,CAAA;IAEzB,MAAM,WAAW,GAAG,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,aAAa,CAE/C,CAAA;IAEb,MAAM,kBAAkB,GAAG,WAAW,EAAE,kBAAkB,CAAA;IAC1D,MAAM,OAAO,GAAG,kBAAkB;QAChC,CAAC,CAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,kBAAkB,CAAyB;QACvE,CAAC,CAAC,SAAS,CAAA;IAEb,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,CAAC,WAAW,IAAI,CAAC,OAAO,EAAE,CAAC;YAC7B,OAAM;QACR,CAAC;QAED,MAAM,SAAS,GAAmB,EAAE,CAAA;QAEpC,IAAI,OAAO,CAAC,oBAAoB,EAAE,CAAC;YACjC,SAAS,CAAC,IAAI,CACZ,OAAO,CAAC,GAAG,EAAE;gBACX,MAAM,SAAS,GAAG,WAAW,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;gBAC3C,IAAI,SAAS,EAAE,CAAC;oBACd,MAAM,GAAG,GAAG,SAAS,CAAC,oBAAoB,CAAA;oBAC1C,OAAO,CAAC,oBAAoB,EAAE,CAAC,GAAG,CAAC,CAAA;gBACrC,CAAC;YACH,CAAC,CAAC,CACH,CAAA;QACH,CAAC;QAED,SAAS,CAAC,IAAI,CACZ,OAAO,CAAC,GAAG,EAAE;YACX,MAAM,GAAG,GAAG,OAAO,CAAC,iBAAiB,CAAA;YACrC,MAAM,SAAS,GAAG,WAAW,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YAC3C,IAAI,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;gBACnC,SAAS,CAAC,qBAAqB,CAAC,GAAG,CAAC,CAAA;YACtC,CAAC;iBAAM,IAAI,SAAS,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;gBAC1C,SAAS,CAAC,0BAA0B,EAAE,CAAA;YACxC,CAAC;QACH,CAAC,CAAC,CACH,CAAA;QAED,OAAO,GAAG,EAAE;YACV,SAAS,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;gBACpB,CAAC,EAAE,CAAA;YACL,CAAC,CAAC,CAAA;QACJ,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,WAAW,EAAE,OAAO,CAAC,CAAC,CAAA;IAE1B,OAAO,IAAI,CAAA;AACb,CAAC,CAAC,CAAA;AAEF,eAAe,qBAAqB,CAAA"}

package/dist/LaunchProteinView/components/AlphaFoldDBSearch.js CHANGED Viewed

@@ -62,7 +62,7 @@ const AlphaFoldDBSearch = observer(function AlphaFoldDBSearch({ feature, model,
                 "directly and use \"Enter manually\" above, or use \"Search sequence against AlphaFoldDB API\" if available.")),
             state.showStructureSelectors && (React.createElement(React.Fragment, null,
                 React.createElement("div", { className: classes.selectorsRow },
-                    React.createElement(TranscriptSelector, { val: state.userSelection ?? '', setVal: state.setUserSelection, structureSequence: state.structureSequence, feature: feature, isoforms: state.transcriptOptions, isoformSequences: state.isoformSequences }),
+                    React.createElement(TranscriptSelector, { val: state.userSelection, setVal: state.setUserSelection, structureSequence: state.structureSequence, feature: feature, isoforms: state.transcriptOptions, isoformSequences: state.isoformSequences }),
                     state.showAlphaFoldEntrySelector && (React.createElement(AlphaFoldEntrySelector, { predictions: state.predictions, selectedEntryIndex: state.selectedEntryIndex, onSelectionChange: state.setSelectedEntryIndex }))),
                 state.showSequenceSearchStatus && (React.createElement(SequenceSearchStatus, { isLoading: state.isSequenceSearchLoading, uniprotId: state.uniprotId, url: state.url, hasProteinSequence: !!state.userSelectedProteinSequence, sequenceSearchType: state.sequenceSearchType })),
                 state.showAlphaFoldDBSearchStatus && (React.createElement(AlphaFoldDBSearchStatus, { uniprotId: state.uniprotId, selectedTranscript: state.selectedTranscript, structureSequence: state.structureSequence, isoformSequences: state.isoformSequences, url: state.url }))))),

package/dist/LaunchProteinView/components/AlphaFoldDBSearch.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"AlphaFoldDBSearch.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/AlphaFoldDBSearch.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAChE,OAAO,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACxE,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAC/D,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,+BAA+B,CAAA;AACxD,OAAO,oBAAoB,MAAM,+BAA+B,CAAA;AAMhE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;QACb,OAAO,EAAE;YACP,YAAY,EAAE,EAAE;SACjB;QACD,kBAAkB,EAAE;YAClB,YAAY,EAAE,CAAC;SAChB;KACF;IACD,YAAY,EAAE;QACZ,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,KAAK;QACpB,GAAG,EAAE,EAAE;QACP,UAAU,EAAE,YAAY;KACzB;CACF,CAAC,CAAA;AAEF,MAAM,iBAAiB,GAAG,QAAQ,CAAC,SAAS,iBAAiB,CAAC,EAC5D,OAAO,EACP,KAAK,EACL,WAAW,EACX,kBAAkB,EAClB,0BAA0B,GAO3B;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAE9D,MAAM,KAAK,GAAG,oBAAoB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAErD,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,CAAC,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAE1D,oBAAC,cAAc,IACb,UAAU,EAAE,KAAK,CAAC,UAAU,EAC5B,kBAAkB,EAAE,KAAK,CAAC,aAAa,EACvC,eAAe,EAAE,KAAK,CAAC,eAAe,EACtC,uBAAuB,EAAE,KAAK,CAAC,kBAAkB,EACjD,gBAAgB,EAAE,KAAK,CAAC,gBAAgB,EACxC,kBAAkB,EAAE,CAAC,CAAC,KAAK,CAAC,2BAA2B,EAAE,GAAG,EAC5D,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,EAC5C,0BAA0B,EAAE,KAAK,CAAC,qBAAqB,EACvD,UAAU,EACR,KAAK,CAAC,sBAAsB,CAAC,CAAC,CAAC,CAC7B,oBAAC,kBAAkB,IACjB,aAAa,EAAE,KAAK,CAAC,aAAa,EAClC,QAAQ,EAAE,KAAK,CAAC,QAAQ,EACxB,UAAU,EAAE,KAAK,CAAC,eAAe,EACjC,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,GAC5C,CACH,CAAC,CAAC,CAAC,IAAI,GAEV;YAED,KAAK,CAAC,eAAe,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACnC,oBAAC,eAAe,IAAC,GAAG,EAAE,MAAM,EAAE,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,MAAM,GAAI,CACtE,CAAC;YAED,KAAK,CAAC,kBAAkB,IAAI,CAC3B;gBACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,eAAe;;oBAC1B,KAAK,CAAC,iBAAiB,CACjC;gBACb,oBAAC,mBAAmB,IAClB,OAAO,EAAE,KAAK,CAAC,cAAc,EAC7B,iBAAiB,EAAE,KAAK,CAAC,sBAAsB,EAC/C,QAAQ,EAAE,KAAK,CAAC,oBAAoB,GACpC;gBACF,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,eAAe;;oBAEpB,GAAG;oBAC9B,oBAAC,YAAY,IAAC,IAAI,EAAC,0BAA0B,cAE9B;oBAAC,GAAG;2DAER,CACZ,CACJ;YAEA,KAAK,CAAC,aAAa,IAAI,CACtB,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,eAAe;;gBACjB,KAAK,CAAC,mBAAmB;;gBACjB,GAAG;gBACzC,oBAAC,YAAY,IAAC,IAAI,EAAC,0BAA0B,cAAuB;gBAAC,GAAG;8HAG7D,CACd;YAEA,KAAK,CAAC,sBAAsB,IAAI,CAC/B;gBACE,6BAAK,SAAS,EAAE,OAAO,CAAC,YAAY;oBAClC,oBAAC,kBAAkB,IACjB,GAAG,EAAE,KAAK,CAAC,aAAa,~~IAAI~~,~~EAAE,EAC9B,~~MAAM,EAAE,KAAK,CAAC,gBAAgB,EAC9B,iBAAiB,EAAE,KAAK,CAAC,iBAAiB,EAC1C,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,KAAK,CAAC,iBAAiB,EACjC,gBAAgB,EAAE,KAAK,CAAC,gBAAiB,GACzC;oBACD,KAAK,CAAC,0BAA0B,IAAI,CACnC,oBAAC,sBAAsB,IACrB,WAAW,EAAE,KAAK,CAAC,WAAY,EAC/B,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,EAC5C,iBAAiB,EAAE,KAAK,CAAC,qBAAqB,GAC9C,CACH,CACG;gBACL,KAAK,CAAC,wBAAwB,IAAI,CACjC,oBAAC,oBAAoB,IACnB,SAAS,EAAE,KAAK,CAAC,uBAAuB,EACxC,SAAS,EAAE,KAAK,CAAC,SAAS,EAC1B,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,kBAAkB,EAAE,CAAC,CAAC,KAAK,CAAC,2BAA2B,EACvD,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,GAC5C,CACH;gBACA,KAAK,CAAC,2BAA2B,IAAI,CACpC,oBAAC,uBAAuB,IACtB,SAAS,EAAE,KAAK,CAAC,SAAS,EAC1B,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,EAC5C,iBAAiB,EAAE,KAAK,CAAC,iBAAiB,EAC1C,gBAAgB,EAAE,KAAK,CAAC,gBAAiB,EACzC,GAAG,EAAE,KAAK,CAAC,GAAG,GACd,CACH,CACA,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,kBAAkB,IACjB,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,KAAK,CAAC,SAAS,EAC1B,2BAA2B,EAAE,KAAK,CAAC,2BAA2B,EAC9D,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,EAC5C,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,aAAa,EAAE,KAAK,CAAC,aAAa,EAClC,OAAO,EAAE,OAAO,EAChB,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,OAAO,EAChB,kBAAkB,EAAE,kBAAkB,EACtC,0BAA0B,EAAE,0BAA0B,EACtD,cAAc,EAAE,KAAK,CAAC,cAAc,EACpC,SAAS,EAAE,KAAK,CAAC,SAAS,GAC1B,CACY,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}
1	+ {"version":3,"file":"AlphaFoldDBSearch.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/AlphaFoldDBSearch.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAChE,OAAO,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACxE,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAC/D,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,+BAA+B,CAAA;AACxD,OAAO,oBAAoB,MAAM,+BAA+B,CAAA;AAMhE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;QACb,OAAO,EAAE;YACP,YAAY,EAAE,EAAE;SACjB;QACD,kBAAkB,EAAE;YAClB,YAAY,EAAE,CAAC;SAChB;KACF;IACD,YAAY,EAAE;QACZ,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,KAAK;QACpB,GAAG,EAAE,EAAE;QACP,UAAU,EAAE,YAAY;KACzB;CACF,CAAC,CAAA;AAEF,MAAM,iBAAiB,GAAG,QAAQ,CAAC,SAAS,iBAAiB,CAAC,EAC5D,OAAO,EACP,KAAK,EACL,WAAW,EACX,kBAAkB,EAClB,0BAA0B,GAO3B;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAE9D,MAAM,KAAK,GAAG,oBAAoB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAErD,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,CAAC,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAE1D,oBAAC,cAAc,IACb,UAAU,EAAE,KAAK,CAAC,UAAU,EAC5B,kBAAkB,EAAE,KAAK,CAAC,aAAa,EACvC,eAAe,EAAE,KAAK,CAAC,eAAe,EACtC,uBAAuB,EAAE,KAAK,CAAC,kBAAkB,EACjD,gBAAgB,EAAE,KAAK,CAAC,gBAAgB,EACxC,kBAAkB,EAAE,CAAC,CAAC,KAAK,CAAC,2BAA2B,EAAE,GAAG,EAC5D,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,EAC5C,0BAA0B,EAAE,KAAK,CAAC,qBAAqB,EACvD,UAAU,EACR,KAAK,CAAC,sBAAsB,CAAC,CAAC,CAAC,CAC7B,oBAAC,kBAAkB,IACjB,aAAa,EAAE,KAAK,CAAC,aAAa,EAClC,QAAQ,EAAE,KAAK,CAAC,QAAQ,EACxB,UAAU,EAAE,KAAK,CAAC,eAAe,EACjC,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,GAC5C,CACH,CAAC,CAAC,CAAC,IAAI,GAEV;YAED,KAAK,CAAC,eAAe,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACnC,oBAAC,eAAe,IAAC,GAAG,EAAE,MAAM,EAAE,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,MAAM,GAAI,CACtE,CAAC;YAED,KAAK,CAAC,kBAAkB,IAAI,CAC3B;gBACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,eAAe;;oBAC1B,KAAK,CAAC,iBAAiB,CACjC;gBACb,oBAAC,mBAAmB,IAClB,OAAO,EAAE,KAAK,CAAC,cAAc,EAC7B,iBAAiB,EAAE,KAAK,CAAC,sBAAsB,EAC/C,QAAQ,EAAE,KAAK,CAAC,oBAAoB,GACpC;gBACF,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,eAAe;;oBAEpB,GAAG;oBAC9B,oBAAC,YAAY,IAAC,IAAI,EAAC,0BAA0B,cAE9B;oBAAC,GAAG;2DAER,CACZ,CACJ;YAEA,KAAK,CAAC,aAAa,IAAI,CACtB,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,eAAe;;gBACjB,KAAK,CAAC,mBAAmB;;gBACjB,GAAG;gBACzC,oBAAC,YAAY,IAAC,IAAI,EAAC,0BAA0B,cAAuB;gBAAC,GAAG;8HAG7D,CACd;YAEA,KAAK,CAAC,sBAAsB,IAAI,CAC/B;gBACE,6BAAK,SAAS,EAAE,OAAO,CAAC,YAAY;oBAClC,oBAAC,kBAAkB,IACjB,GAAG,EAAE,KAAK,CAAC,aAAa,EACxB,MAAM,EAAE,KAAK,CAAC,gBAAgB,EAC9B,iBAAiB,EAAE,KAAK,CAAC,iBAAiB,EAC1C,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,KAAK,CAAC,iBAAiB,EACjC,gBAAgB,EAAE,KAAK,CAAC,gBAAiB,GACzC;oBACD,KAAK,CAAC,0BAA0B,IAAI,CACnC,oBAAC,sBAAsB,IACrB,WAAW,EAAE,KAAK,CAAC,WAAY,EAC/B,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,EAC5C,iBAAiB,EAAE,KAAK,CAAC,qBAAqB,GAC9C,CACH,CACG;gBACL,KAAK,CAAC,wBAAwB,IAAI,CACjC,oBAAC,oBAAoB,IACnB,SAAS,EAAE,KAAK,CAAC,uBAAuB,EACxC,SAAS,EAAE,KAAK,CAAC,SAAS,EAC1B,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,kBAAkB,EAAE,CAAC,CAAC,KAAK,CAAC,2BAA2B,EACvD,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,GAC5C,CACH;gBACA,KAAK,CAAC,2BAA2B,IAAI,CACpC,oBAAC,uBAAuB,IACtB,SAAS,EAAE,KAAK,CAAC,SAAS,EAC1B,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,EAC5C,iBAAiB,EAAE,KAAK,CAAC,iBAAiB,EAC1C,gBAAgB,EAAE,KAAK,CAAC,gBAAiB,EACzC,GAAG,EAAE,KAAK,CAAC,GAAG,GACd,CACH,CACA,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,kBAAkB,IACjB,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,KAAK,CAAC,SAAS,EAC1B,2BAA2B,EAAE,KAAK,CAAC,2BAA2B,EAC9D,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,EAC5C,GAAG,EAAE,KAAK,CAAC,GAAG,EACd,aAAa,EAAE,KAAK,CAAC,aAAa,EAClC,OAAO,EAAE,OAAO,EAChB,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,OAAO,EAChB,kBAAkB,EAAE,kBAAkB,EACtC,0BAA0B,EAAE,0BAA0B,EACtD,cAAc,EAAE,KAAK,CAAC,cAAc,EACpC,SAAS,EAAE,KAAK,CAAC,SAAS,GAC1B,CACY,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}

package/dist/LaunchProteinView/components/AlphaFoldEntrySelector.js CHANGED Viewed

@@ -11,8 +11,8 @@ export default function AlphaFoldEntrySelector({ predictions, selectedEntryIndex
     return (React.createElement("div", null,
         React.createElement(TextField, { select: true, label: "AlphaFold Structure Entry", value: selectedEntryIndex, helperText: "Select an AlphaFold structure entry (isoform)", onChange: e => {
                 onSelectionChange(Number(e.target.value));
-            } }, [...predictions]
-            .sort((a, b) => a.modelEntityId.length - b.modelEntityId.length)
+            } }, predictions
+            .toSorted((a, b) => a.modelEntityId.length - b.modelEntityId.length)
             .map((prediction, index) => (React.createElement("option", { key: index, value: index }, prediction.modelEntityId))))));
 }
 //# sourceMappingURL=AlphaFoldEntrySelector.js.map

package/dist/LaunchProteinView/components/AlphaFoldEntrySelector.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"AlphaFoldEntrySelector.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/AlphaFoldEntrySelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAUzC;;GAEG;AACH,MAAM,CAAC,OAAO,UAAU,sBAAsB,CAAC,EAC7C,WAAW,EACX,kBAAkB,EAClB,iBAAiB,GACW;IAC5B,8CAA8C;IAC9C,IAAI,WAAW,CAAC,MAAM,IAAI,CAAC,EAAE,CAAC;QAC5B,OAAO,IAAI,CAAA;IACb,CAAC;IAED,OAAO,CACL;QACE,oBAAC,SAAS,IACR,MAAM,QACN,KAAK,EAAC,2BAA2B,EACjC,KAAK,EAAE,kBAAkB,EACzB,UAAU,EAAC,+CAA+C,EAC1D,QAAQ,EAAE,CAAC,CAAC,EAAE;gBACZ,iBAAiB,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAA;YAC3C,CAAC,IAEA,~~CAAC,GAAG,~~WAAW~~,CAAC~~;~~aACd~~,~~IAAI~~,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,aAAa,CAAC,MAAM,CAAC;~~aAC/D~~,GAAG,CAAC,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,CAAC,CAC1B,gCAAQ,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,IAC7B,UAAU,CAAC,aAAa,CAClB,CACV,CAAC,CACM,CACR,CACP,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"AlphaFoldEntrySelector.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/AlphaFoldEntrySelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAUzC;;GAEG;AACH,MAAM,CAAC,OAAO,UAAU,sBAAsB,CAAC,EAC7C,WAAW,EACX,kBAAkB,EAClB,iBAAiB,GACW;IAC5B,8CAA8C;IAC9C,IAAI,WAAW,CAAC,MAAM,IAAI,CAAC,EAAE,CAAC;QAC5B,OAAO,IAAI,CAAA;IACb,CAAC;IAED,OAAO,CACL;QACE,oBAAC,SAAS,IACR,MAAM,QACN,KAAK,EAAC,2BAA2B,EACjC,KAAK,EAAE,kBAAkB,EACzB,UAAU,EAAC,+CAA+C,EAC1D,QAAQ,EAAE,CAAC,CAAC,EAAE;gBACZ,iBAAiB,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAA;YAC3C,CAAC,IAEA,WAAW;aACT,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,aAAa,CAAC,MAAM,CAAC;aACnE,GAAG,CAAC,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,CAAC,CAC1B,gCAAQ,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,IAC7B,UAAU,CAAC,aAAa,CAClB,CACV,CAAC,CACM,CACR,CACP,CAAA;AACH,CAAC"}

package/dist/LaunchProteinView/components/FoldseekActionMenu.js CHANGED Viewed

@@ -68,9 +68,7 @@ export default function FoldseekActionMenu({ hit, session, view, feature, select
         React.createElement(Menu, { anchorEl: anchorEl, open: open, onClose: handleMenuClose },
             React.createElement(MenuItem, { onClick: handleLaunch3D }, "Launch 3D protein view"),
             uniprotId ? (React.createElement(MenuItem, { onClick: () => {
-                    handleLaunch1D().catch((e) => {
-                        console.error(e);
-                    });
+                    void handleLaunch1D();
                 } }, "Launch 1D protein annotation view")) : null,
             uniprotId && hasMsaViewPlugin() ? (React.createElement(MenuItem, { onClick: handleLaunchMSA }, "Launch MSA view (AlphaFoldDB a3m)")) : null)));
 }

package/dist/LaunchProteinView/components/FoldseekActionMenu.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"FoldseekActionMenu.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/FoldseekActionMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAEtD,OAAO,EAAE,aAAa,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAA;AACxE,OAAO,EACL,0BAA0B,EAC1B,+BAA+B,EAC/B,gBAAgB,EAChB,mBAAmB,EACnB,mBAAmB,EACnB,aAAa,GACd,MAAM,0BAA0B,CAAA;AAWjC,MAAM,CAAC,OAAO,UAAU,kBAAkB,CAAC,EACzC,GAAG,EACH,OAAO,EACP,IAAI,EACJ,OAAO,EACP,kBAAkB,EAClB,8BAA8B,EAC9B,OAAO,GASR;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAqB,IAAI,CAAC,CAAA;IAClE,MAAM,IAAI,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAA;IAE9B,MAAM,SAAS,GAAG,+BAA+B,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IAE7D,MAAM,WAAW,GAAG,CAAC,KAA0C,EAAE,EAAE;QACjE,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC,CAAA;IAClC,CAAC,CAAA;IAED,MAAM,eAAe,GAAG,GAAG,EAAE;QAC3B,WAAW,CAAC,IAAI,CAAC,CAAA;IACnB,CAAC,CAAA;IAED,MAAM,cAAc,GAAG,GAAG,EAAE;QAC1B,eAAe,EAAE,CAAA;QACjB,kEAAkE;QAClE,MAAM,OAAO,GACX,CAAC,GAAG,CAAC,YAAY,IAAI,gBAAgB,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,CAAC;YACtD,CAAC,CAAC,aAAa,CAAC,GAAG,CAAC,GAAI,EAAE,GAAG,CAAC,IAAK,EAAE,GAAG,EAAE,GAAG,CAAC,MAAM,CAAC;YACrD,CAAC,CAAC,SAAS,CAAA;QACf,mBAAmB,CAAC;YAClB,OAAO;YACP,IAAI;YACJ,OAAO;YACP,kBAAkB;YAClB,SAAS;YACT,GAAG,EAAE,GAAG,CAAC,YAAY;YACrB,IAAI,EAAE,OAAO;YACb,8BAA8B;SAC/B,CAAC,CAAA;QACF,OAAO,EAAE,CAAA;IACX,CAAC,CAAA;IAED,MAAM,cAAc,GAAG,KAAK,IAAI,EAAE;QAChC,eAAe,EAAE,CAAA;QACjB,IAAI,CAAC;YACH,MAAM,mBAAmB,CAAC;gBACxB,OAAO;gBACP,IAAI;gBACJ,OAAO;gBACP,kBAAkB;gBAClB,SAAS;gBACT,aAAa,EAAE,0BAA0B,CAAC,GAAG,CAAC,MAAM,CAAC;aACtD,CAAC,CAAA;QACJ,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,WAAW,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAA;QAChC,CAAC;QACD,OAAO,EAAE,CAAA;IACX,CAAC,CAAA;IAED,MAAM,eAAe,GAAG,GAAG,EAAE;QAC3B,eAAe,EAAE,CAAA;QACjB,aAAa,CAAC;YACZ,OAAO;YACP,IAAI;YACJ,OAAO;YACP,kBAAkB;YAClB,SAAS;SACV,CAAC,CAAA;QACF,OAAO,EAAE,CAAA;IACX,CAAC,CAAA;IAED,MAAM,OAAO,GAAG,GAAG,CAAC,YAAY,IAAI,gBAAgB,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,CAAC,CAAA;IACvE,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,OAAO,sCAAc,CAAA;IACvB,CAAC;IAED,OAAO,CACL;QACE,oBAAC,MAAM,IAAC,IAAI,EAAC,OAAO,EAAC,OAAO,EAAC,UAAU,EAAC,OAAO,EAAE,WAAW,WAEnD;QACT,oBAAC,IAAI,IAAC,QAAQ,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,OAAO,EAAE,eAAe;YAC5D,oBAAC,QAAQ,IAAC,OAAO,EAAE,cAAc,6BAAmC;YACnE,SAAS,CAAC,CAAC,CAAC,CACX,oBAAC,QAAQ,IACP,OAAO,EAAE,GAAG,EAAE;oBACZ,~~cAAc,EAAE,CAAC,~~KAAK,~~CAAC~~,~~CAAC,CAAU,~~EAAE,~~EAAE;wBACpC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,~~CAAA;~~oBAClB~~,CAAC,~~CAAC,CAAA;gBACJ,CAAC,~~wCAGQ,CACZ,CAAC,CAAC,CAAC,IAAI;YACP,SAAS,IAAI,gBAAgB,EAAE,CAAC,CAAC,CAAC,CACjC,oBAAC,QAAQ,IAAC,OAAO,EAAE,eAAe,wCAEvB,CACZ,CAAC,CAAC,CAAC,IAAI,CACH,CACN,CACJ,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"FoldseekActionMenu.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/FoldseekActionMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAEtD,OAAO,EAAE,aAAa,EAAE,gBAAgB,EAAE,MAAM,wBAAwB,CAAA;AACxE,OAAO,EACL,0BAA0B,EAC1B,+BAA+B,EAC/B,gBAAgB,EAChB,mBAAmB,EACnB,mBAAmB,EACnB,aAAa,GACd,MAAM,0BAA0B,CAAA;AAWjC,MAAM,CAAC,OAAO,UAAU,kBAAkB,CAAC,EACzC,GAAG,EACH,OAAO,EACP,IAAI,EACJ,OAAO,EACP,kBAAkB,EAClB,8BAA8B,EAC9B,OAAO,GASR;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAqB,IAAI,CAAC,CAAA;IAClE,MAAM,IAAI,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAA;IAE9B,MAAM,SAAS,GAAG,+BAA+B,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;IAE7D,MAAM,WAAW,GAAG,CAAC,KAA0C,EAAE,EAAE;QACjE,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC,CAAA;IAClC,CAAC,CAAA;IAED,MAAM,eAAe,GAAG,GAAG,EAAE;QAC3B,WAAW,CAAC,IAAI,CAAC,CAAA;IACnB,CAAC,CAAA;IAED,MAAM,cAAc,GAAG,GAAG,EAAE;QAC1B,eAAe,EAAE,CAAA;QACjB,kEAAkE;QAClE,MAAM,OAAO,GACX,CAAC,GAAG,CAAC,YAAY,IAAI,gBAAgB,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,CAAC;YACtD,CAAC,CAAC,aAAa,CAAC,GAAG,CAAC,GAAI,EAAE,GAAG,CAAC,IAAK,EAAE,GAAG,EAAE,GAAG,CAAC,MAAM,CAAC;YACrD,CAAC,CAAC,SAAS,CAAA;QACf,mBAAmB,CAAC;YAClB,OAAO;YACP,IAAI;YACJ,OAAO;YACP,kBAAkB;YAClB,SAAS;YACT,GAAG,EAAE,GAAG,CAAC,YAAY;YACrB,IAAI,EAAE,OAAO;YACb,8BAA8B;SAC/B,CAAC,CAAA;QACF,OAAO,EAAE,CAAA;IACX,CAAC,CAAA;IAED,MAAM,cAAc,GAAG,KAAK,IAAI,EAAE;QAChC,eAAe,EAAE,CAAA;QACjB,IAAI,CAAC;YACH,MAAM,mBAAmB,CAAC;gBACxB,OAAO;gBACP,IAAI;gBACJ,OAAO;gBACP,kBAAkB;gBAClB,SAAS;gBACT,aAAa,EAAE,0BAA0B,CAAC,GAAG,CAAC,MAAM,CAAC;aACtD,CAAC,CAAA;QACJ,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,WAAW,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAA;QAChC,CAAC;QACD,OAAO,EAAE,CAAA;IACX,CAAC,CAAA;IAED,MAAM,eAAe,GAAG,GAAG,EAAE;QAC3B,eAAe,EAAE,CAAA;QACjB,aAAa,CAAC;YACZ,OAAO;YACP,IAAI;YACJ,OAAO;YACP,kBAAkB;YAClB,SAAS;SACV,CAAC,CAAA;QACF,OAAO,EAAE,CAAA;IACX,CAAC,CAAA;IAED,MAAM,OAAO,GAAG,GAAG,CAAC,YAAY,IAAI,gBAAgB,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,CAAC,CAAA;IACvE,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,OAAO,sCAAc,CAAA;IACvB,CAAC;IAED,OAAO,CACL;QACE,oBAAC,MAAM,IAAC,IAAI,EAAC,OAAO,EAAC,OAAO,EAAC,UAAU,EAAC,OAAO,EAAE,WAAW,WAEnD;QACT,oBAAC,IAAI,IAAC,QAAQ,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,OAAO,EAAE,eAAe;YAC5D,oBAAC,QAAQ,IAAC,OAAO,EAAE,cAAc,6BAAmC;YACnE,SAAS,CAAC,CAAC,CAAC,CACX,oBAAC,QAAQ,IACP,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,cAAc,EAAE,CAAA;gBACvB,CAAC,wCAGQ,CACZ,CAAC,CAAC,CAAC,IAAI;YACP,SAAS,IAAI,gBAAgB,EAAE,CAAC,CAAC,CAAC,CACjC,oBAAC,QAAQ,IAAC,OAAO,EAAE,eAAe,wCAEvB,CACZ,CAAC,CAAC,CAAC,IAAI,CACH,CACN,CACJ,CAAA;AACH,CAAC"}

package/dist/LaunchProteinView/components/FoldseekDatabaseSelector.js CHANGED Viewed

@@ -25,28 +25,23 @@ const useStyles = makeStyles()({
 });
 export default function FoldseekDatabaseSelector({ selected, onChange, disabled, }) {
     const { classes } = useStyles();
-    const handleToggle = (dbId) => {
-        if (selected.includes(dbId)) {
-            onChange(selected.filter(id => id !== dbId));
-        }
-        else {
-            onChange([...selected, dbId]);
-        }
-    };
-    const selectAll = () => {
-        onChange(FOLDSEEK_DATABASES.map(db => db.id));
-    };
-    const deselectAll = () => {
-        onChange([]);
-    };
     return (React.createElement("div", { className: classes.root },
         React.createElement("div", { className: classes.header },
             React.createElement(Typography, { variant: "subtitle2" }, "Databases to search:"),
             React.createElement("div", { className: classes.buttons },
-                React.createElement(Button, { size: "small", onClick: selectAll, disabled: disabled }, "Select all"),
-                React.createElement(Button, { size: "small", onClick: deselectAll, disabled: disabled }, "Clear"))),
+                React.createElement(Button, { size: "small", onClick: () => {
+                        onChange(FOLDSEEK_DATABASES.map(db => db.id));
+                    }, disabled: disabled }, "Select all"),
+                React.createElement(Button, { size: "small", onClick: () => {
+                        onChange([]);
+                    }, disabled: disabled }, "Clear"))),
         React.createElement(FormGroup, { className: classes.checkboxGroup }, FOLDSEEK_DATABASES.map(db => (React.createElement(FormControlLabel, { key: db.id, control: React.createElement(Checkbox, { size: "small", checked: selected.includes(db.id), onChange: () => {
-                    handleToggle(db.id);
+                    if (selected.includes(db.id)) {
+                        onChange(selected.filter(id => id !== db.id));
+                    }
+                    else {
+                        onChange([...selected, db.id]);
+                    }
                 }, disabled: disabled }), label: db.label }))))));
 }
 //# sourceMappingURL=FoldseekDatabaseSelector.js.map

package/dist/LaunchProteinView/components/FoldseekDatabaseSelector.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"FoldseekDatabaseSelector.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/FoldseekDatabaseSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EACL,MAAM,EACN,QAAQ,EACR,gBAAgB,EAChB,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EACL,kBAAkB,GAEnB,MAAM,yBAAyB,CAAA;AAEhC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,IAAI,EAAE;QACJ,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,GAAG,EAAE,CAAC;KACP;IACD,MAAM,EAAE;QACN,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,GAAG,EAAE,CAAC;KACP;IACD,OAAO,EAAE;QACP,OAAO,EAAE,MAAM;QACf,GAAG,EAAE,CAAC;KACP;IACD,aAAa,EAAE;QACb,OAAO,EAAE,MAAM;QACf,mBAAmB,EAAE,gBAAgB;QACrC,GAAG,EAAE,CAAC;KACP;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,OAAO,UAAU,wBAAwB,CAAC,EAC/C,QAAQ,EACR,QAAQ,EACR,QAAQ,GAKT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,~~MAAM~~,~~YAAY~~,~~GAAG~~,~~CAAC~~,~~IAAwB,~~EAAE,~~EAAE;QAChD~~,IAAI,~~QAAQ~~,~~CAAC~~,~~QAAQ~~,~~CAAC~~,~~IAAI,~~CAAC,~~EAAE,CAAC~~;YAC5B,~~QAAQ~~,~~CAAC~~,~~QAAQ~~,~~CAAC~~,~~MAAM~~,~~CAAC~~,~~EAAE~~,~~CAAC~~,~~EAAE~~,~~CAAC,~~EAAE,~~KAAK~~,~~IAAI,~~CAAC,~~CAAC,CAAA~~;~~QAC9C~~,~~CAAC;aAAM~~,~~CAAC;YACN~~,~~QAAQ~~,~~CAAC,CAAC,GAAG,QAAQ,EAAE,~~IAAI,~~CAAC~~,~~CAAC~~,~~CAAA;QAC/B~~,~~CAAC;IACH~~,~~CAAC~~,~~CAAA;IAED,MAAM,SAAS,~~GAAG,~~GAAG,~~EAAE;~~QACrB~~,QAAQ,CAAC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;~~IAC~~/C,CAAC,~~CAAA;IAED~~,~~MAAM~~,~~WAAW,GAAG,GAAG,~~EAAE~~;QACvB~~,QAAQ,~~CAAC,EAAE,CAAC,CAAA~~;~~IACd~~,~~CAAC,CAAA;IAED,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,6BAAK,SAAS,EAAE,OAAO,CAAC,MAAM;YAC5B,~~oBAAC,~~UAAU,IAAC,OAAO,EAAC,WAAW,2BAAkC;YACjE,6BAAK,SAAS,EAAE,OAAO,CAAC,OAAO;gBAC7B,oBAAC,~~MAAM,~~IAAC~~,IAAI,EAAC,OAAO,~~EAAC~~,OAAO,EAAE,~~SAAS~~,EAAE,QAAQ,EAAE,~~QAAQ~~,~~iBAElD~~;~~gBACT~~,~~oBAAC~~,~~MAAM~~,~~IAAC,IAAI,EAAC,OAAO,EAAC,OAAO,EAAE,WAAW,EAAE,~~QAAQ,EAAE,QAAQ,~~YAEpD~~,CACL,CACF;QACN,oBAAC,SAAS,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa,IACxC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,CAC5B,oBAAC,gBAAgB,IACf,GAAG,EAAE,EAAE,CAAC,EAAE,EACV,OAAO,EACL,oBAAC,QAAQ,IACP,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE,CAAC,EACjC,QAAQ,EAAE,GAAG,EAAE;oBACb,~~YAAY~~,CAAC,EAAE,CAAC,EAAE,CAAC,CAAA;~~gBACrB~~,CAAC,EACD,QAAQ,EAAE,QAAQ,GAClB,EAEJ,KAAK,EAAE,EAAE,CAAC,KAAK,GACf,CACH,CAAC,CACQ,CACR,CACP,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"FoldseekDatabaseSelector.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/FoldseekDatabaseSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EACL,MAAM,EACN,QAAQ,EACR,gBAAgB,EAChB,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EACL,kBAAkB,GAEnB,MAAM,yBAAyB,CAAA;AAEhC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,IAAI,EAAE;QACJ,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,GAAG,EAAE,CAAC;KACP;IACD,MAAM,EAAE;QACN,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,GAAG,EAAE,CAAC;KACP;IACD,OAAO,EAAE;QACP,OAAO,EAAE,MAAM;QACf,GAAG,EAAE,CAAC;KACP;IACD,aAAa,EAAE;QACb,OAAO,EAAE,MAAM;QACf,mBAAmB,EAAE,gBAAgB;QACrC,GAAG,EAAE,CAAC;KACP;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,OAAO,UAAU,wBAAwB,CAAC,EAC/C,QAAQ,EACR,QAAQ,EACR,QAAQ,GAKT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,6BAAK,SAAS,EAAE,OAAO,CAAC,MAAM;YAC5B,oBAAC,UAAU,IAAC,OAAO,EAAC,WAAW,2BAAkC;YACjE,6BAAK,SAAS,EAAE,OAAO,CAAC,OAAO;gBAC7B,oBAAC,MAAM,IACL,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,GAAG,EAAE;wBACZ,QAAQ,CAAC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;oBAC/C,CAAC,EACD,QAAQ,EAAE,QAAQ,iBAGX;gBACT,oBAAC,MAAM,IACL,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,GAAG,EAAE;wBACZ,QAAQ,CAAC,EAAE,CAAC,CAAA;oBACd,CAAC,EACD,QAAQ,EAAE,QAAQ,YAGX,CACL,CACF;QACN,oBAAC,SAAS,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa,IACxC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,CAC5B,oBAAC,gBAAgB,IACf,GAAG,EAAE,EAAE,CAAC,EAAE,EACV,OAAO,EACL,oBAAC,QAAQ,IACP,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE,CAAC,EACjC,QAAQ,EAAE,GAAG,EAAE;oBACb,IAAI,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC;wBAC7B,QAAQ,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;oBAC/C,CAAC;yBAAM,CAAC;wBACN,QAAQ,CAAC,CAAC,GAAG,QAAQ,EAAE,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;oBAChC,CAAC;gBACH,CAAC,EACD,QAAQ,EAAE,QAAQ,GAClB,EAEJ,KAAK,EAAE,EAAE,CAAC,KAAK,GACf,CACH,CAAC,CACQ,CACR,CACP,CAAA;AACH,CAAC"}

package/dist/LaunchProteinView/components/FoldseekSearch.js CHANGED Viewed

@@ -1,4 +1,4 @@
-import React, { useEffect, useMemo, useState } from 'react';
+import React, { useState } from 'react';
 import { ErrorMessage, LoadingEllipses } from '@jbrowse/core/ui';
 import { getContainingView, getSession } from '@jbrowse/core/util';
 import { Button, DialogActions, DialogContent, TextField, Typography, } from '@mui/material';
@@ -9,6 +9,7 @@ import FoldseekResultsTable from './FoldseekResultsTable';
 import TranscriptSelector from './TranscriptSelector';
 import useFoldseekSearch from '../hooks/useFoldseekSearch';
 import useIsoformProteinSequences from '../hooks/useIsoformProteinSequences';
+import useTranscriptSelection from '../hooks/useTranscriptSelection';
 import { DEFAULT_DATABASES } from '../services/foldseekApi';
 import { getTranscriptFeatures } from '../utils/util';
 const useStyles = makeStyles()({
@@ -32,44 +33,20 @@ const FoldseekSearch = observer(function FoldseekSearch({ feature, model, handle
     const session = getSession(model);
     const view = getContainingView(model);
     const [userEditedSequence, setUserEditedSequence] = useState();
-    const [selectedTranscriptId, setSelectedTranscriptId] = useState();
     const [selectedDatabases, setSelectedDatabases] = useState(DEFAULT_DATABASES);
     const { results, cleanedAaSequence, di3Sequence, isLoading, isPredicting, error, statusMessage, predictStructure, search, reset, } = useFoldseekSearch();
-    const transcripts = useMemo(() => getTranscriptFeatures(feature), [feature]);
+    const transcripts = getTranscriptFeatures(feature);
     const { isoformSequences, isLoading: isLoadingIsoforms, error: isoformError, } = useIsoformProteinSequences({ feature, view });
-    // SYNC: src/LaunchProteinView/hooks/useTranscriptSelection.ts, useAlphaFoldDBSearch.ts
-    // Auto-select synchronously to avoid render gap
-    const autoSelectedTranscriptId = useMemo(() => {
-        if (isoformSequences && !selectedTranscriptId) {
-            const sortedTranscripts = [...transcripts].sort((a, b) => {
-                const seqA = isoformSequences[a.id()]?.seq;
-                const seqB = isoformSequences[b.id()]?.seq;
-                return (seqB?.length ?? 0) - (seqA?.length ?? 0);
-            });
-            const firstWithSeq = sortedTranscripts.find(t => isoformSequences[t.id()]?.seq);
-            return firstWithSeq?.id();
-        }
-        return undefined;
-    }, [isoformSequences, selectedTranscriptId, transcripts]);
-    const effectiveSelectedTranscriptId = selectedTranscriptId ?? autoSelectedTranscriptId ?? '';
+    const { userSelection: effectiveSelectedTranscriptId, setUserSelection } = useTranscriptSelection({ options: transcripts, isoformSequences });
     const selectedTranscript = transcripts.find(t => t.id() === effectiveSelectedTranscriptId);
-    const selectedIsoformData = isoformSequences?.[effectiveSelectedTranscriptId];
+    const selectedIsoformData = effectiveSelectedTranscriptId
+        ? isoformSequences?.[effectiveSelectedTranscriptId]
+        : undefined;
     const cleanedSequence = selectedIsoformData?.seq.replace(/\*/g, '') ?? '';
     const sequence = userEditedSequence ?? cleanedSequence;
-    useEffect(() => {
+    const setUserSelectionWithReset = (id) => {
+        setUserSelection(id);
         setUserEditedSequence(undefined);
-    }, [effectiveSelectedTranscriptId]);
-    const handlePredict = async () => {
-        if (sequence.trim()) {
-            await predictStructure(sequence.trim());
-        }
-    };
-    const handleSearch = () => {
-        if (cleanedAaSequence && di3Sequence && selectedDatabases.length > 0) {
-            search(cleanedAaSequence, di3Sequence, selectedDatabases).catch((e) => {
-                console.error(e);
-            });
-        }
     };
     const canPredict = sequence.trim().length > 0 && !isPredicting && !isLoading;
     const canSearch = !!cleanedAaSequence &&
@@ -83,7 +60,7 @@ const FoldseekSearch = observer(function FoldseekSearch({ feature, model, handle
             combinedError && !isLoadingIsoforms ? (React.createElement(ErrorMessage, { error: combinedError })) : null,
             isLoadingIsoforms ? (React.createElement(LoadingEllipses, { variant: "subtitle2", message: "Loading transcript sequences" })) : null,
             isoformSequences ? (React.createElement(React.Fragment, null,
-                React.createElement(TranscriptSelector, { val: effectiveSelectedTranscriptId, setVal: setSelectedTranscriptId, isoforms: transcripts, isoformSequences: isoformSequences, feature: feature, disabled: isBusy }),
+                React.createElement(TranscriptSelector, { val: effectiveSelectedTranscriptId, setVal: setUserSelectionWithReset, isoforms: transcripts, isoformSequences: isoformSequences, feature: feature, disabled: isBusy }),
                 React.createElement(TextField, { label: "Protein sequence (amino acids)", multiline: true, rows: 4, value: sequence, onChange: e => {
                         setUserEditedSequence(e.target.value);
                     }, placeholder: `MKTVRQERLKSIVRILERSKEPVSGAQLAEEL...`, disabled: isBusy, InputProps: {
@@ -102,10 +79,16 @@ const FoldseekSearch = observer(function FoldseekSearch({ feature, model, handle
             React.createElement(Button, { variant: "contained", color: "secondary", onClick: handleClose }, "Cancel"),
             results ? (React.createElement(Button, { variant: "outlined", onClick: reset }, "New search")) : null,
             !di3Sequence ? (React.createElement(Button, { variant: "contained", color: "primary", disabled: !canPredict, onClick: () => {
-                    handlePredict().catch((e) => {
-                        console.error(e);
-                    });
-                } }, isPredicting ? 'Predicting...' : 'Predict 3Di structure')) : (React.createElement(Button, { variant: "contained", color: "primary", disabled: !canSearch, onClick: handleSearch }, isLoading ? 'Searching...' : 'Search Foldseek')))));
+                    if (sequence.trim()) {
+                        void predictStructure(sequence.trim());
+                    }
+                } }, isPredicting ? 'Predicting...' : 'Predict 3Di structure')) : (React.createElement(Button, { variant: "contained", color: "primary", disabled: !canSearch, onClick: () => {
+                    if (cleanedAaSequence &&
+                        di3Sequence &&
+                        selectedDatabases.length > 0) {
+                        void search(cleanedAaSequence, di3Sequence, selectedDatabases);
+                    }
+                } }, isLoading ? 'Searching...' : 'Search Foldseek')))));
 });
 export default FoldseekSearch;
 //# sourceMappingURL=FoldseekSearch.js.map

package/dist/LaunchProteinView/components/FoldseekSearch.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"FoldseekSearch.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/FoldseekSearch.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,~~SAAS,EAAE,OAAO,EAAE,~~QAAQ,EAAE,MAAM,OAAO,CAAA;~~AAE3D~~,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAChE,OAAO,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,wBAAwB,MAAM,4BAA4B,CAAA;AACjE,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,iBAAiB,MAAM,4BAA4B,CAAA;AAC1D,OAAO,0BAA0B,MAAM,qCAAqC,CAAA;AAC5E,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAA;AAC3D,OAAO,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAA;AAKrD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;QACb,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,GAAG,EAAE,EAAE;KACR;IACD,aAAa,EAAE;QACb,UAAU,EAAE,WAAW;KACxB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,GAAG,EAAE,CAAC;KACP;CACF,CAAC,CAAA;AAEF,MAAM,cAAc,GAAG,QAAQ,CAAC,SAAS,cAAc,CAAC,EACtD,OAAO,EACP,KAAK,EACL,WAAW,GAKZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAE9D,MAAM,CAAC,kBAAkB,EAAE,qBAAqB,CAAC,GAAG,QAAQ,EAEzD,CAAA;IACH,MAAM,CAAC,~~oBAAoB,EAAE,uBAAuB,CAAC,GAAG,QAAQ,EAE7D,CAAA;IACH,MAAM,CAAC,~~iBAAiB,EAAE,oBAAoB,CAAC,GAAG,QAAQ,CAAC,iBAAiB,CAAC,CAAA;IAE7E,MAAM,EACJ,OAAO,EACP,iBAAiB,EACjB,WAAW,EACX,SAAS,EACT,YAAY,EACZ,KAAK,EACL,aAAa,EACb,gBAAgB,EAChB,MAAM,EACN,KAAK,GACN,GAAG,iBAAiB,EAAE,CAAA;IAEvB,MAAM,WAAW,GAAG,~~OAAO,CAAC,GAAG,EAAE,CAAC,~~qBAAqB,CAAC,OAAO,CAAC,~~EAAE,CAAC,OAAO,CAAC,CAAC,~~CAAA;~~IAE5E~~,MAAM,EACJ,gBAAgB,EAChB,SAAS,EAAE,iBAAiB,EAC5B,KAAK,EAAE,YAAY,GACpB,GAAG,0BAA0B,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAEjD,~~uFAAuF;IACvF,gDAAgD;IAChD,~~MAAM,~~wBAAwB,GAAG,OAAO,CAAC,GAAG,~~EAAE~~;QAC5C~~,~~IAAI~~,~~gBAAgB,IAAI,CAAC,oBAAoB,~~EAAE,~~CAAC;YAC9C~~,~~MAAM,iBAAiB,GAAG,CAAC,GAAG,WAAW,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,~~EAAE,~~CAAC,EAAE,EAAE;gBACvD,MAAM,IAAI,GAAG,~~gBAAgB,~~CAAC,CAAC,CAAC,~~EAAE,~~EAAE~~,~~CAAC~~,~~EAAE,GAAG,CAAA;gBAC1C,MAAM,IAAI,GAAG,gBAAgB,~~CAAC,~~CAAC,CAAC,~~EAAE,~~EAAE~~,~~CAAC,~~EAAE,~~GAAG~~,~~CAAA;gBAC1C,OAAO,CAAC,IAAI,~~EAAE,~~MAAM~~,~~IAAI,CAAC,CAAC,GAAG,CAAC,IAAI,~~EAAE,~~MAAM,IAAI,~~CAAC,~~CAAC,~~CAAA;~~YAClD~~,~~CAAC,CAAC,CAAA;YACF,~~MAAM,~~YAAY~~,GAAG,~~iBAAiB~~,CAAC,IAAI,CACzC,CAAC,CAAC,EAAE,CAAC,~~gBAAgB,~~CAAC,CAAC,~~CAAC,~~EAAE,EAAE,~~CAAC~~,~~EAAE~~,~~GAAG~~,~~CACnC,~~CAAA;~~YACD~~,~~OAAO~~,~~YAAY~~,~~EAAE~~,~~EAAE,EAAE,CAAA~~;~~QAC3B~~,CAAC~~;QACD~~,~~OAAO,SAAS,CAAA;IAClB,~~CAAC,~~EAAE,CAAC,~~gBAAgB,EAAE,~~oBAAoB,EAAE,WAAW,~~CAAC,~~CAAC,CAAA;IAEzD,MAAM,~~6BAA6B,~~GACjC,oBAAoB,IAAI,wBAAwB,IAAI,EAAE,CAAA~~;~~IAExD~~,~~MAAM,kBAAkB,GAAG,WAAW,~~CAAC,~~IAAI,CACzC,~~CAAC,~~CAAC~~,~~EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,KAAK,6BAA6B,CAC9C,~~CAAA;~~IACD~~,MAAM,~~mBAAmB,GAAG,gBAAgB,EAAE,CAAC,6BAA6B,CAAC,CAAA;IAE7E,MAAM,~~eAAe,GAAG,mBAAmB,EAAE,GAAG,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,CAAC,IAAI,EAAE,CAAA;IACzE,MAAM,QAAQ,GAAG,kBAAkB,IAAI,eAAe,CAAA;IAEtD,~~SAAS,CAAC,GAAG,EAAE;QACb,qBAAqB,CAAC,SAAS,CAAC,CAAA;IAClC,CAAC,EAAE,CAAC,6BAA6B,CAAC,CAAC,CAAA;IAEnC,~~MAAM,~~aAAa~~,GAAG,~~KAAK,IAAI,EAAE;QAC/B,IAAI,QAAQ,~~CAAC,~~IAAI~~,EAAE,EAAE~~,CAAC~~;~~YACpB~~,~~MAAM,~~gBAAgB,CAAC,~~QAAQ,CAAC,IAAI,~~EAAE,CAAC,CAAA;~~QACzC~~,~~CAAC;IACH~~,CAAC,~~CAAA;IAED~~,~~MAAM,YAAY,GAAG,GAAG,EAAE;QACxB,IAAI,iBAAiB,IAAI,WAAW,IAAI,iBAAiB,~~CAAC,~~MAAM,GAAG,CAAC,EAAE,CAAC;YACrE,MAAM,CAAC,iBAAiB,EAAE,WAAW,EAAE,iBAAiB,CAAC,CAAC,KAAK,CAC7D,CAAC,CAAU,EAAE,EAAE;gBACb,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,~~CAAA;~~YAClB~~,CAAC,~~CACF,~~CAAA;~~QACH,CAAC;IACH,CAAC,CAAA;~~IAED,MAAM,UAAU,GAAG,QAAQ,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,YAAY,IAAI,CAAC,SAAS,CAAA;IAC5E,MAAM,SAAS,GACb,CAAC,CAAC,iBAAiB;QACnB,CAAC,CAAC,WAAW;QACb,iBAAiB,CAAC,MAAM,GAAG,CAAC;QAC5B,CAAC,SAAS,CAAA;IAEZ,MAAM,aAAa,GAAG,KAAK,IAAI,YAAY,CAAA;IAC3C,MAAM,MAAM,GAAG,SAAS,IAAI,YAAY,CAAA;IAExC,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,aAAa,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC,CACrC,oBAAC,YAAY,IAAC,KAAK,EAAE,aAAa,GAAI,CACvC,CAAC,CAAC,CAAC,IAAI;YAEP,iBAAiB,CAAC,CAAC,CAAC,CACnB,oBAAC,eAAe,IACd,OAAO,EAAC,WAAW,EACnB,OAAO,EAAC,8BAA8B,GACtC,CACH,CAAC,CAAC,CAAC,IAAI;YAEP,gBAAgB,CAAC,CAAC,CAAC,CAClB;gBACE,oBAAC,kBAAkB,IACjB,GAAG,EAAE,6BAA6B,EAClC,MAAM,EAAE,~~uBAAuB~~,~~EAC/B~~,QAAQ,EAAE,WAAW,EACrB,gBAAgB,EAAE,gBAAgB,EAClC,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,MAAM,GAChB;gBACF,oBAAC,SAAS,IACR,KAAK,EAAC,gCAAgC,EACtC,SAAS,QACT,IAAI,EAAE,CAAC,EACP,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,CAAC,CAAC,EAAE;wBACZ,qBAAqB,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBACvC,CAAC,EACD,WAAW,EAAE,qCAAqC,EAClD,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE;wBACV,SAAS,EAAE,OAAO,CAAC,aAAa;qBACjC,GACD,CACD,CACJ,CAAC,CAAC,CAAC,IAAI;YAEP,WAAW,CAAC,CAAC,CAAC,CACb,6BAAK,SAAS,EAAE,OAAO,CAAC,UAAU;gBAChC,oBAAC,UAAU,IAAC,OAAO,EAAC,WAAW,oDAElB;gBACb,oBAAC,SAAS,IACR,SAAS,QACT,IAAI,EAAE,CAAC,EACP,KAAK,EAAE,WAAW,EAClB,UAAU,EAAE;wBACV,SAAS,EAAE,OAAO,CAAC,aAAa;wBAChC,QAAQ,EAAE,IAAI;qBACf,GACD,CACE,CACP,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,wBAAwB,IACvB,QAAQ,EAAE,iBAAiB,EAC3B,QAAQ,EAAE,oBAAoB,EAC9B,QAAQ,EAAE,MAAM,GAChB;YAED,aAAa,CAAC,CAAC,CAAC,CACf,oBAAC,eAAe,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,aAAa,GAAI,CAChE,CAAC,CAAC,CAAC,IAAI;YAEP,OAAO,CAAC,CAAC,CAAC,CACT,oBAAC,oBAAoB,IACnB,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,OAAO,EAChB,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,OAAO,EAChB,kBAAkB,EAAE,kBAAkB,EACtC,8BAA8B,EAAE,QAAQ,EACxC,OAAO,EAAE,WAAW,GACpB,CACH,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,WAAW,aAEzD;YACR,OAAO,CAAC,CAAC,CAAC,CACT,oBAAC,MAAM,IAAC,OAAO,EAAC,UAAU,EAAC,OAAO,EAAE,KAAK,iBAEhC,CACV,CAAC,CAAC,CAAC,IAAI;YACP,CAAC,WAAW,CAAC,CAAC,CAAC,CACd,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,UAAU,EACrB,OAAO,EAAE,GAAG,EAAE;oBACZ,~~aAAa~~,~~EAAE~~,CAAC,~~KAAK~~,~~CAAC,CAAC,CAAU,~~EAAE,EAAE~~;wBACnC~~,~~OAAO,~~CAAC,KAAK,~~CAAC~~,CAAC,CAAC,~~CAAA;oBAClB~~,~~CAAC~~,CAAC,CAAA;~~gBACJ~~,CAAC,IAEA,YAAY,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,uBAAuB,CAClD,CACV,CAAC,CAAC,CAAC,CACF,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,SAAS,EACpB,OAAO,EAAE,~~YAAY~~,~~IAEpB~~,SAAS,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,iBAAiB,CACxC,CACV,CACa,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}
1	+ {"version":3,"file":"FoldseekSearch.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/FoldseekSearch.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAChE,OAAO,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,wBAAwB,MAAM,4BAA4B,CAAA;AACjE,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,iBAAiB,MAAM,4BAA4B,CAAA;AAC1D,OAAO,0BAA0B,MAAM,qCAAqC,CAAA;AAC5E,OAAO,sBAAsB,MAAM,iCAAiC,CAAA;AACpE,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAA;AAC3D,OAAO,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAA;AAKrD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;QACb,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,GAAG,EAAE,EAAE;KACR;IACD,aAAa,EAAE;QACb,UAAU,EAAE,WAAW;KACxB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,GAAG,EAAE,CAAC;KACP;CACF,CAAC,CAAA;AAEF,MAAM,cAAc,GAAG,QAAQ,CAAC,SAAS,cAAc,CAAC,EACtD,OAAO,EACP,KAAK,EACL,WAAW,GAKZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAE9D,MAAM,CAAC,kBAAkB,EAAE,qBAAqB,CAAC,GAAG,QAAQ,EAEzD,CAAA;IACH,MAAM,CAAC,iBAAiB,EAAE,oBAAoB,CAAC,GAAG,QAAQ,CAAC,iBAAiB,CAAC,CAAA;IAE7E,MAAM,EACJ,OAAO,EACP,iBAAiB,EACjB,WAAW,EACX,SAAS,EACT,YAAY,EACZ,KAAK,EACL,aAAa,EACb,gBAAgB,EAChB,MAAM,EACN,KAAK,GACN,GAAG,iBAAiB,EAAE,CAAA;IAEvB,MAAM,WAAW,GAAG,qBAAqB,CAAC,OAAO,CAAC,CAAA;IAElD,MAAM,EACJ,gBAAgB,EAChB,SAAS,EAAE,iBAAiB,EAC5B,KAAK,EAAE,YAAY,GACpB,GAAG,0BAA0B,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAEjD,MAAM,EAAE,aAAa,EAAE,6BAA6B,EAAE,gBAAgB,EAAE,GACtE,sBAAsB,CAAC,EAAE,OAAO,EAAE,WAAW,EAAE,gBAAgB,EAAE,CAAC,CAAA;IAEpE,MAAM,kBAAkB,GAAG,WAAW,CAAC,IAAI,CACzC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,KAAK,6BAA6B,CAC9C,CAAA;IACD,MAAM,mBAAmB,GAAG,6BAA6B;QACvD,CAAC,CAAC,gBAAgB,EAAE,CAAC,6BAA6B,CAAC;QACnD,CAAC,CAAC,SAAS,CAAA;IAEb,MAAM,eAAe,GAAG,mBAAmB,EAAE,GAAG,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,CAAC,IAAI,EAAE,CAAA;IACzE,MAAM,QAAQ,GAAG,kBAAkB,IAAI,eAAe,CAAA;IAEtD,MAAM,yBAAyB,GAAG,CAAC,EAAsB,EAAE,EAAE;QAC3D,gBAAgB,CAAC,EAAE,CAAC,CAAA;QACpB,qBAAqB,CAAC,SAAS,CAAC,CAAA;IAClC,CAAC,CAAA;IAED,MAAM,UAAU,GAAG,QAAQ,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,YAAY,IAAI,CAAC,SAAS,CAAA;IAC5E,MAAM,SAAS,GACb,CAAC,CAAC,iBAAiB;QACnB,CAAC,CAAC,WAAW;QACb,iBAAiB,CAAC,MAAM,GAAG,CAAC;QAC5B,CAAC,SAAS,CAAA;IAEZ,MAAM,aAAa,GAAG,KAAK,IAAI,YAAY,CAAA;IAC3C,MAAM,MAAM,GAAG,SAAS,IAAI,YAAY,CAAA;IAExC,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,aAAa,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC,CACrC,oBAAC,YAAY,IAAC,KAAK,EAAE,aAAa,GAAI,CACvC,CAAC,CAAC,CAAC,IAAI;YAEP,iBAAiB,CAAC,CAAC,CAAC,CACnB,oBAAC,eAAe,IACd,OAAO,EAAC,WAAW,EACnB,OAAO,EAAC,8BAA8B,GACtC,CACH,CAAC,CAAC,CAAC,IAAI;YAEP,gBAAgB,CAAC,CAAC,CAAC,CAClB;gBACE,oBAAC,kBAAkB,IACjB,GAAG,EAAE,6BAA6B,EAClC,MAAM,EAAE,yBAAyB,EACjC,QAAQ,EAAE,WAAW,EACrB,gBAAgB,EAAE,gBAAgB,EAClC,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,MAAM,GAChB;gBACF,oBAAC,SAAS,IACR,KAAK,EAAC,gCAAgC,EACtC,SAAS,QACT,IAAI,EAAE,CAAC,EACP,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,CAAC,CAAC,EAAE;wBACZ,qBAAqB,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBACvC,CAAC,EACD,WAAW,EAAE,qCAAqC,EAClD,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE;wBACV,SAAS,EAAE,OAAO,CAAC,aAAa;qBACjC,GACD,CACD,CACJ,CAAC,CAAC,CAAC,IAAI;YAEP,WAAW,CAAC,CAAC,CAAC,CACb,6BAAK,SAAS,EAAE,OAAO,CAAC,UAAU;gBAChC,oBAAC,UAAU,IAAC,OAAO,EAAC,WAAW,oDAElB;gBACb,oBAAC,SAAS,IACR,SAAS,QACT,IAAI,EAAE,CAAC,EACP,KAAK,EAAE,WAAW,EAClB,UAAU,EAAE;wBACV,SAAS,EAAE,OAAO,CAAC,aAAa;wBAChC,QAAQ,EAAE,IAAI;qBACf,GACD,CACE,CACP,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,wBAAwB,IACvB,QAAQ,EAAE,iBAAiB,EAC3B,QAAQ,EAAE,oBAAoB,EAC9B,QAAQ,EAAE,MAAM,GAChB;YAED,aAAa,CAAC,CAAC,CAAC,CACf,oBAAC,eAAe,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,aAAa,GAAI,CAChE,CAAC,CAAC,CAAC,IAAI;YAEP,OAAO,CAAC,CAAC,CAAC,CACT,oBAAC,oBAAoB,IACnB,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,OAAO,EAChB,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,OAAO,EAChB,kBAAkB,EAAE,kBAAkB,EACtC,8BAA8B,EAAE,QAAQ,EACxC,OAAO,EAAE,WAAW,GACpB,CACH,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,WAAW,aAEzD;YACR,OAAO,CAAC,CAAC,CAAC,CACT,oBAAC,MAAM,IAAC,OAAO,EAAC,UAAU,EAAC,OAAO,EAAE,KAAK,iBAEhC,CACV,CAAC,CAAC,CAAC,IAAI;YACP,CAAC,WAAW,CAAC,CAAC,CAAC,CACd,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,UAAU,EACrB,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC;wBACpB,KAAK,gBAAgB,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAA;oBACxC,CAAC;gBACH,CAAC,IAEA,YAAY,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,uBAAuB,CAClD,CACV,CAAC,CAAC,CAAC,CACF,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,SAAS,EACpB,OAAO,EAAE,GAAG,EAAE;oBACZ,IACE,iBAAiB;wBACjB,WAAW;wBACX,iBAAiB,CAAC,MAAM,GAAG,CAAC,EAC5B,CAAC;wBACD,KAAK,MAAM,CAAC,iBAAiB,EAAE,WAAW,EAAE,iBAAiB,CAAC,CAAA;oBAChE,CAAC;gBACH,CAAC,IAEA,SAAS,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,iBAAiB,CACxC,CACV,CACa,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}

package/dist/LaunchProteinView/components/HelpDialog.js CHANGED Viewed

@@ -18,8 +18,6 @@ export default function HelpDialog({ handleClose, }) {
             React.createElement(Typography2, null, "If you run into challenges with this workflow e.g. your transcripts are not being found in UniProt then you can use the Manual import form, or contact colin.diesh@gmail.com for troubleshooting")),
         React.createElement(Divider, null),
         React.createElement(DialogActions, null,
-            React.createElement(Button, { onClick: () => {
-                    handleClose();
-                }, color: "primary" }, "Close"))));
+            React.createElement(Button, { onClick: handleClose, color: "primary" }, "Close"))));
 }
 //# sourceMappingURL=HelpDialog.js.map

package/dist/LaunchProteinView/components/HelpDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"HelpDialog.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/HelpDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,OAAO,EACP,UAAU,GACX,MAAM,eAAe,CAAA;AAItB,SAAS,WAAW,CAAC,EAAE,QAAQ,EAAmB;IAChD,OAAO,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,IAAG,QAAQ,CAAc,CAAA;AAClE,CAAC;AACD,MAAM,CAAC,OAAO,UAAU,UAAU,CAAC,EACjC,WAAW,GAGZ;IACC,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,MAAM;QAC3D,oBAAC,aAAa;YACZ,oBAAC,WAAW;;gBAEV;oBACE,+LAIK;oBACL,uLAIK;oBACL,wPAKK;oBACL,8PAKK;oBACL,+RAKK,CACF,CACO;YACd,oBAAC,WAAW,2MAIE,CACA;QAChB,oBAAC,OAAO,OAAG;QACX,oBAAC,aAAa;YACZ,oBAAC,MAAM,~~IACL~~,OAAO,EAAE,~~GAAG,EAAE;oBACZ,~~WAAW,EAAE,~~CAAA;gBACf,CAAC,EACD,~~KAAK,EAAC,SAAS,~~YAGR~~,CACK,CACT,CACV,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"HelpDialog.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/HelpDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,OAAO,EACP,UAAU,GACX,MAAM,eAAe,CAAA;AAItB,SAAS,WAAW,CAAC,EAAE,QAAQ,EAAmB;IAChD,OAAO,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,IAAG,QAAQ,CAAc,CAAA;AAClE,CAAC;AACD,MAAM,CAAC,OAAO,UAAU,UAAU,CAAC,EACjC,WAAW,GAGZ;IACC,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,MAAM;QAC3D,oBAAC,aAAa;YACZ,oBAAC,WAAW;;gBAEV;oBACE,+LAIK;oBACL,uLAIK;oBACL,wPAKK;oBACL,8PAKK;oBACL,+RAKK,CACF,CACO;YACd,oBAAC,WAAW,2MAIE,CACA;QAChB,oBAAC,OAAO,OAAG;QACX,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,SAAS,YAEpC,CACK,CACT,CACV,CAAA;AACH,CAAC"}

package/dist/LaunchProteinView/components/LaunchProteinViewDialog.js CHANGED Viewed

@@ -13,9 +13,7 @@ export default function LaunchProteinViewDialog({ handleClose, feature, model, }
     const [alignmentAlgorithm, setAlignmentAlgorithm] = useLocalStorage('jbrowse-protein3d-alignment-algorithm', DEFAULT_ALIGNMENT_ALGORITHM);
     return (React.createElement(Dialog, { maxWidth: "xl", title: "Launch protein view", titleNode: React.createElement(React.Fragment, null,
             "Launch protein view ",
-            React.createElement(HelpButton, null)), open: true, onClose: () => {
-            handleClose();
-        } },
+            React.createElement(HelpButton, null)), open: true, onClose: handleClose },
         React.createElement(Tabs, { value: choice, onChange: (_, val) => {
                 setChoice(val);
             } },

package/dist/LaunchProteinView/components/LaunchProteinViewDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"LaunchProteinViewDialog.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/LaunchProteinViewDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,eAAe,CAAA;AAEzC,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AACnD,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,qBAAqB,MAAM,yBAAyB,CAAA;AAC3D,OAAO,EAAE,2BAA2B,EAAE,MAAM,yBAAyB,CAAA;AACrE,OAAO,EAAE,eAAe,EAAE,MAAM,0BAA0B,CAAA;AAK1D,MAAM,CAAC,OAAO,UAAU,uBAAuB,CAAC,EAC9C,WAAW,EACX,OAAO,EACP,KAAK,GAKN;IACC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;IACvC,MAAM,CAAC,kBAAkB,EAAE,qBAAqB,CAAC,GAC/C,eAAe,CACb,uCAAuC,EACvC,2BAA2B,CAC5B,CAAA;IAEH,OAAO,CACL,oBAAC,MAAM,IACL,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,qBAAqB,EAC3B,SAAS,EACP;;YACsB,oBAAC,UAAU,OAAG,CACjC,EAEL,IAAI,QACJ,OAAO,EAAE,~~GAAG,EAAE;YACZ,~~WAAW~~,EAAE,CAAA~~;~~QACf~~,~~CAAC;QAED,~~oBAAC,IAAI,IACH,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,SAAS,CAAC,GAAG,CAAC,CAAA;YAChB,CAAC;YAED,oBAAC,GAAG,IAAC,KAAK,EAAE,CAAC,EAAE,KAAK,EAAC,oBAAoB,GAAG;YAC5C,oBAAC,GAAG,IAAC,KAAK,EAAE,CAAC,EAAE,KAAK,EAAC,iBAAiB,GAAG;YACzC,oBAAC,GAAG,IAAC,KAAK,EAAE,CAAC,EAAE,KAAK,EAAC,oBAAoB,GAAG,CACvC;QACP,oBAAC,QAAQ,IAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;YAC/B,oBAAC,iBAAiB,IAChB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,EACxB,kBAAkB,EAAE,kBAAkB,EACtC,0BAA0B,EAAE,qBAAqB,GACjD,CACO;QACX,oBAAC,QAAQ,IAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;YAC/B,oBAAC,cAAc,IACb,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO;QACX,oBAAC,QAAQ,IAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;YAC/B,oBAAC,qBAAqB,IACpB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,EACxB,kBAAkB,EAAE,kBAAkB,EACtC,0BAA0B,EAAE,qBAAqB,GACjD,CACO,CACJ,CACV,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"LaunchProteinViewDialog.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/LaunchProteinViewDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,eAAe,CAAA;AAEzC,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AACnD,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,qBAAqB,MAAM,yBAAyB,CAAA;AAC3D,OAAO,EAAE,2BAA2B,EAAE,MAAM,yBAAyB,CAAA;AACrE,OAAO,EAAE,eAAe,EAAE,MAAM,0BAA0B,CAAA;AAK1D,MAAM,CAAC,OAAO,UAAU,uBAAuB,CAAC,EAC9C,WAAW,EACX,OAAO,EACP,KAAK,GAKN;IACC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;IACvC,MAAM,CAAC,kBAAkB,EAAE,qBAAqB,CAAC,GAC/C,eAAe,CACb,uCAAuC,EACvC,2BAA2B,CAC5B,CAAA;IAEH,OAAO,CACL,oBAAC,MAAM,IACL,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,qBAAqB,EAC3B,SAAS,EACP;;YACsB,oBAAC,UAAU,OAAG,CACjC,EAEL,IAAI,QACJ,OAAO,EAAE,WAAW;QAEpB,oBAAC,IAAI,IACH,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,SAAS,CAAC,GAAG,CAAC,CAAA;YAChB,CAAC;YAED,oBAAC,GAAG,IAAC,KAAK,EAAE,CAAC,EAAE,KAAK,EAAC,oBAAoB,GAAG;YAC5C,oBAAC,GAAG,IAAC,KAAK,EAAE,CAAC,EAAE,KAAK,EAAC,iBAAiB,GAAG;YACzC,oBAAC,GAAG,IAAC,KAAK,EAAE,CAAC,EAAE,KAAK,EAAC,oBAAoB,GAAG,CACvC;QACP,oBAAC,QAAQ,IAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;YAC/B,oBAAC,iBAAiB,IAChB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,EACxB,kBAAkB,EAAE,kBAAkB,EACtC,0BAA0B,EAAE,qBAAqB,GACjD,CACO;QACX,oBAAC,QAAQ,IAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;YAC/B,oBAAC,cAAc,IACb,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO;QACX,oBAAC,QAAQ,IAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;YAC/B,oBAAC,qBAAqB,IACpB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,EACxB,kBAAkB,EAAE,kBAAkB,EACtC,0BAA0B,EAAE,qBAAqB,GACjD,CACO,CACJ,CACV,CAAA;AACH,CAAC"}

package/dist/LaunchProteinView/components/ProteinViewActions.js CHANGED Viewed

@@ -32,58 +32,6 @@ export default function ProteinViewActions({ handleClose, uniprotId, userSelecte
         });
         handleClose();
     };
-    const handleLaunch1DView = async () => {
-        setDialogOpen(false);
-        if (!uniprotId || !selectedTranscript) {
-            return;
-        }
-        try {
-            await launch1DProteinView({
-                session,
-                view,
-                feature,
-                selectedTranscript,
-                uniprotId,
-                confidenceUrl,
-            });
-        }
-        catch (e) {
-            console.error(e);
-            session.notifyError(`${e}`, e);
-        }
-        handleClose();
-    };
-    const handleLaunchMSAView = () => {
-        setDialogOpen(false);
-        if (!selectedTranscript || !uniprotId) {
-            return;
-        }
-        launchMsaView({
-            session,
-            view,
-            feature,
-            selectedTranscript,
-            uniprotId,
-        });
-        handleClose();
-    };
-    const handleLaunch3DWithMsa = () => {
-        setDialogOpen(false);
-        if (!selectedTranscript || !uniprotId) {
-            return;
-        }
-        launch3DProteinViewWithMsa({
-            session,
-            view,
-            feature,
-            selectedTranscript,
-            uniprotId,
-            url,
-            userProvidedTranscriptSequence: userSelectedProteinSequence?.seq,
-            alignmentAlgorithm,
-        });
-        handleClose();
-    };
     return (React.createElement(React.Fragment, null,
         sequencesMatch === false ? (React.createElement(Typography, { variant: "body2", sx: { mr: 2, display: 'flex', alignItems: 'center' } },
             "Transcript and structure sequences differ, will run",
@@ -92,9 +40,7 @@ export default function ProteinViewActions({ handleClose, uniprotId, userSelecte
             ' ',
             "alignment",
             React.createElement(AlignmentSettingsButton, { value: alignmentAlgorithm, onChange: onAlignmentAlgorithmChange }))) : null,
-        React.createElement(Button, { variant: "contained", color: "secondary", size: "small", onClick: () => {
-                handleClose();
-            } }, "Cancel"),
+        React.createElement(Button, { variant: "contained", color: "secondary", size: "small", onClick: handleClose }, "Cancel"),
         !canLaunch ? (React.createElement(Typography, { variant: "body2", color: "error", sx: { mr: 2 } }, missingReasons.join('. '))) : null,
         React.createElement(ButtonGroup, { variant: "contained", color: "primary", size: "small" },
             React.createElement(Button, { disabled: !canLaunch, onClick: handleLaunch3DView }, "Launch"),
@@ -112,21 +58,66 @@ export default function ProteinViewActions({ handleClose, uniprotId, userSelecte
                         React.createElement("div", null,
                             React.createElement(Typography, { variant: "body1" }, "Launch 3D protein structure view"),
                             React.createElement(Typography, { variant: "body2", color: "text.secondary" }, "View protein structure with genome-to-structure coordinate mapping"))),
-                    React.createElement(MenuItem, { onClick: () => {
-                            handleLaunch1DView().catch((e) => {
+                    React.createElement(MenuItem, { onClick: async () => {
+                            setDialogOpen(false);
+                            if (!uniprotId || !selectedTranscript) {
+                                return;
+                            }
+                            try {
+                                await launch1DProteinView({
+                                    session,
+                                    view,
+                                    feature,
+                                    selectedTranscript,
+                                    uniprotId,
+                                    confidenceUrl,
+                                });
+                            }
+                            catch (e) {
                                 console.error(e);
-                            });
+                                session.notifyError(`${e}`, e);
+                            }
+                            handleClose();
                         } },
                         React.createElement("div", null,
                             React.createElement(Typography, { variant: "body1" }, "Launch 1D protein annotation view"),
                             React.createElement(Typography, { variant: "body2", color: "text.secondary" }, "View protein features and annotations as a linear track"))),
                     hasMsaViewPlugin()
                         ? [
-                            React.createElement(MenuItem, { key: "msa", onClick: handleLaunchMSAView },
+                            React.createElement(MenuItem, { key: "msa", onClick: () => {
+                                    setDialogOpen(false);
+                                    if (!selectedTranscript || !uniprotId) {
+                                        return;
+                                    }
+                                    launchMsaView({
+                                        session,
+                                        view,
+                                        feature,
+                                        selectedTranscript,
+                                        uniprotId,
+                                    });
+                                    handleClose();
+                                } },
                                 React.createElement("div", null,
                                     React.createElement(Typography, { variant: "body1" }, "Launch MSA view"),
                                     React.createElement(Typography, { variant: "body2", color: "text.secondary" }, "View AlphaFold a3m multiple sequence alignment"))),
-                            React.createElement(MenuItem, { key: "3d-msa", onClick: handleLaunch3DWithMsa },
+                            React.createElement(MenuItem, { key: "3d-msa", onClick: () => {
+                                    setDialogOpen(false);
+                                    if (!selectedTranscript || !uniprotId) {
+                                        return;
+                                    }
+                                    launch3DProteinViewWithMsa({
+                                        session,
+                                        view,
+                                        feature,
+                                        selectedTranscript,
+                                        uniprotId,
+                                        url,
+                                        userProvidedTranscriptSequence: userSelectedProteinSequence?.seq,
+                                        alignmentAlgorithm,
+                                    });
+                                    handleClose();
+                                } },
                                 React.createElement("div", null,
                                     React.createElement(Typography, { variant: "body1" }, "Launch 3D structure + MSA view"),
                                     React.createElement(Typography, { variant: "body2", color: "text.secondary" }, "Launch both views with AlphaFold a3m MSA"))),

package/dist/LaunchProteinView/components/ProteinViewActions.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"ProteinViewActions.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/ProteinViewActions.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,iBAAiB,MAAM,mCAAmC,CAAA;AACjE,OAAO,EACL,MAAM,EACN,WAAW,EACX,MAAM,EACN,aAAa,EACb,WAAW,EACX,QAAQ,EACR,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AAEtB,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAC/D,OAAO,EAAE,0BAA0B,EAAE,MAAM,yBAAyB,CAAA;AACpE,OAAO,EACL,gBAAgB,EAChB,mBAAmB,EACnB,mBAAmB,EACnB,0BAA0B,EAC1B,aAAa,GACd,MAAM,0BAA0B,CAAA;AAsBjC,MAAM,CAAC,OAAO,UAAU,kBAAkB,CAAC,EACzC,WAAW,EACX,SAAS,EACT,2BAA2B,EAC3B,kBAAkB,EAClB,GAAG,EACH,aAAa,EACb,OAAO,EACP,IAAI,EACJ,OAAO,EACP,kBAAkB,EAClB,0BAA0B,EAC1B,cAAc,EACd,SAAS,GACe;IACxB,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACnD,MAAM,SAAS,GACb,CAAC,CAAC,SAAS,IAAI,CAAC,CAAC,2BAA2B,IAAI,CAAC,CAAC,kBAAkB,CAAA;IAEtE,MAAM,cAAc,GAAG,SAAS;QAC9B,CAAC,CAAC,EAAE;QACJ,CAAC,CAAC;YACE,CAAC,SAAS,IAAI,qBAAqB;YACnC,CAAC,2BAA2B;gBAC1B,6EAA6E;YAC/E,CAAC,kBAAkB,IAAI,wBAAwB;SAChD,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;IAErB,MAAM,kBAAkB,GAAG,GAAG,EAAE;QAC9B,aAAa,CAAC,KAAK,CAAC,CAAA;QACpB,IAAI,CAAC,kBAAkB,EAAE,CAAC;YACxB,OAAM;QACR,CAAC;QACD,mBAAmB,CAAC;YAClB,OAAO;YACP,IAAI;YACJ,OAAO;YACP,kBAAkB;YAClB,SAAS;YACT,GAAG;YACH,8BAA8B,EAAE,2BAA2B,EAAE,GAAG;YAChE,kBAAkB;SACnB,CAAC,CAAA;QAEF,WAAW,EAAE,CAAA;IACf,CAAC,CAAA;IAED,~~MAAM,kBAAkB,GAAG,KAAK,IAAI,EAAE;QACpC,aAAa,CAAC,KAAK,CAAC,CAAA;QACpB,IAAI,CAAC,SAAS,IAAI,CAAC,kBAAkB,EAAE,CAAC;YACtC,OAAM;QACR,CAAC;QACD,IAAI,CAAC;YACH,MAAM,mBAAmB,CAAC;gBACxB,~~OAAO~~;gBACP~~,IAAI;gBACJ,OAAO;gBACP,kBAAkB;gBAClB,SAAS;gBACT,aAAa;aACd,CAAC,CAAA;QACJ,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,WAAW,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAA;QAChC,CAAC;QACD,WAAW,EAAE,CAAA;IACf,CAAC,CAAA;IAED,MAAM,mBAAmB,GAAG,GAAG,EAAE;QAC/B,aAAa,CAAC,KAAK,CAAC,CAAA;QACpB,IAAI,CAAC,kBAAkB,IAAI,CAAC,SAAS,EAAE,CAAC;YACtC,OAAM;QACR,CAAC;QACD,aAAa,CAAC;YACZ,OAAO;YACP,IAAI;YACJ,OAAO;YACP,kBAAkB;YAClB,SAAS;SACV,CAAC,CAAA;QAEF,WAAW,EAAE,CAAA;IACf,CAAC,CAAA;IAED,MAAM,qBAAqB,GAAG,GAAG,EAAE;QACjC,aAAa,CAAC,KAAK,CAAC,CAAA;QACpB,IAAI,CAAC,kBAAkB,IAAI,CAAC,SAAS,EAAE,CAAC;YACtC,OAAM;QACR,CAAC;QACD,0BAA0B,CAAC;YACzB,OAAO;YACP,IAAI;YACJ,OAAO;YACP,kBAAkB;YAClB,SAAS;YACT,GAAG;YACH,8BAA8B,EAAE,2BAA2B,EAAE,GAAG;YAChE,kBAAkB;SACnB,CAAC,CAAA;QAEF,WAAW,EAAE,CAAA;IACf,CAAC,CAAA;IAED,OAAO,CACL;QACG,cAAc,KAAK,KAAK,CAAC,CAAC,CAAC,CAC1B,oBAAC,UAAU,IACT,OAAO,EAAC,OAAO,EACf,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE;;YAEA,GAAG;YACtD,0BAA0B,CAAC,kBAAkB,CAAC,IAAI,kBAAkB;YAAE,GAAG;;YAE1E,oBAAC,uBAAuB,IACtB,KAAK,EAAE,kBAAkB,EACzB,QAAQ,EAAE,0BAA0B,GACpC,CACS,CACd,CAAC,CAAC,CAAC,IAAI;QACR,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,~~GAAG,EAAE;gBACZ,~~WAAW,~~EAAE,CAAA~~;~~YACf,CAAC,aAGM;~~QACR,CAAC,SAAS,CAAC,CAAC,CAAC,CACZ,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,OAAO,EAAC,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,IACpD,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,CACf,CACd,CAAC,CAAC,CAAC,IAAI;QACR,oBAAC,WAAW,IAAC,OAAO,EAAC,WAAW,EAAC,KAAK,EAAC,SAAS,EAAC,IAAI,EAAC,OAAO;YAC3D,oBAAC,MAAM,IAAC,QAAQ,EAAE,CAAC,SAAS,EAAE,OAAO,EAAE,kBAAkB,aAEhD;YACT,oBAAC,MAAM,IACL,QAAQ,EAAE,CAAC,SAAS,EACpB,OAAO,EAAE,GAAG,EAAE;oBACZ,aAAa,CAAC,IAAI,CAAC,CAAA;gBACrB,CAAC,gBACU,qBAAqB;gBAEhC,oBAAC,iBAAiB,OAAG,CACd,CACG;QACd,oBAAC,MAAM,IACL,IAAI,EAAE,UAAU,EAChB,OAAO,EAAE,GAAG,EAAE;gBACZ,aAAa,CAAC,KAAK,CAAC,CAAA;YACtB,CAAC;YAED,oBAAC,WAAW,yBAA6B;YACzC,oBAAC,aAAa;gBACZ,oBAAC,QAAQ;oBACP,oBAAC,QAAQ,IAAC,OAAO,EAAE,kBAAkB;wBACnC;4BACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,uCAEd;4BACb,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,gBAAgB,yEAGrC,CACT,CACG;oBACX,oBAAC,QAAQ,IACP,OAAO,EAAE,~~GAAG~~,EAAE;~~4BACZ~~,kBAAkB,EAAE,CAAC,~~KAAK~~,CAAC,CAAC,~~CAAU~~,EAAE,~~EAAE~~;~~gCACxC~~,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;~~4BAClB~~,CAAC,CAAC,CAAA;~~wBACJ~~,CAAC;wBAED;4BACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,wCAEd;4BACb,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,gBAAgB,8DAErC,CACT,CACG;oBACV,gBAAgB,EAAE;wBACjB,CAAC,CAAC;4BACE,oBAAC,QAAQ,~~IAAC~~,GAAG,EAAC,KAAK,~~EAAC~~,OAAO,EAAE,~~mBAAmB~~;~~gCAC9C~~;oCACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,sBAA6B;oCACxD,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,gBAAgB,qDAErC,CACT,CACG;4BACX,oBAAC,QAAQ,~~IAAC~~,GAAG,EAAC,QAAQ,~~EAAC~~,OAAO,EAAE,~~qBAAqB~~;~~gCACnD~~;oCACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,qCAEd;oCACb,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,gBAAgB,+CAErC,CACT,CACG;yBACZ;wBACH,CAAC,CAAC,IAAI,CACC,CACG,CACT,CACR,CACJ,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"ProteinViewActions.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/ProteinViewActions.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,iBAAiB,MAAM,mCAAmC,CAAA;AACjE,OAAO,EACL,MAAM,EACN,WAAW,EACX,MAAM,EACN,aAAa,EACb,WAAW,EACX,QAAQ,EACR,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AAEtB,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAC/D,OAAO,EAAE,0BAA0B,EAAE,MAAM,yBAAyB,CAAA;AACpE,OAAO,EACL,gBAAgB,EAChB,mBAAmB,EACnB,mBAAmB,EACnB,0BAA0B,EAC1B,aAAa,GACd,MAAM,0BAA0B,CAAA;AAsBjC,MAAM,CAAC,OAAO,UAAU,kBAAkB,CAAC,EACzC,WAAW,EACX,SAAS,EACT,2BAA2B,EAC3B,kBAAkB,EAClB,GAAG,EACH,aAAa,EACb,OAAO,EACP,IAAI,EACJ,OAAO,EACP,kBAAkB,EAClB,0BAA0B,EAC1B,cAAc,EACd,SAAS,GACe;IACxB,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACnD,MAAM,SAAS,GACb,CAAC,CAAC,SAAS,IAAI,CAAC,CAAC,2BAA2B,IAAI,CAAC,CAAC,kBAAkB,CAAA;IAEtE,MAAM,cAAc,GAAG,SAAS;QAC9B,CAAC,CAAC,EAAE;QACJ,CAAC,CAAC;YACE,CAAC,SAAS,IAAI,qBAAqB;YACnC,CAAC,2BAA2B;gBAC1B,6EAA6E;YAC/E,CAAC,kBAAkB,IAAI,wBAAwB;SAChD,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;IAErB,MAAM,kBAAkB,GAAG,GAAG,EAAE;QAC9B,aAAa,CAAC,KAAK,CAAC,CAAA;QACpB,IAAI,CAAC,kBAAkB,EAAE,CAAC;YACxB,OAAM;QACR,CAAC;QACD,mBAAmB,CAAC;YAClB,OAAO;YACP,IAAI;YACJ,OAAO;YACP,kBAAkB;YAClB,SAAS;YACT,GAAG;YACH,8BAA8B,EAAE,2BAA2B,EAAE,GAAG;YAChE,kBAAkB;SACnB,CAAC,CAAA;QAEF,WAAW,EAAE,CAAA;IACf,CAAC,CAAA;IAED,OAAO,CACL;QACG,cAAc,KAAK,KAAK,CAAC,CAAC,CAAC,CAC1B,oBAAC,UAAU,IACT,OAAO,EAAC,OAAO,EACf,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE;;YAEA,GAAG;YACtD,0BAA0B,CAAC,kBAAkB,CAAC,IAAI,kBAAkB;YAAE,GAAG;;YAE1E,oBAAC,uBAAuB,IACtB,KAAK,EAAE,kBAAkB,EACzB,QAAQ,EAAE,0BAA0B,GACpC,CACS,CACd,CAAC,CAAC,CAAC,IAAI;QACR,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,WAAW,aAGb;QACR,CAAC,SAAS,CAAC,CAAC,CAAC,CACZ,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,OAAO,EAAC,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,IACpD,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,CACf,CACd,CAAC,CAAC,CAAC,IAAI;QACR,oBAAC,WAAW,IAAC,OAAO,EAAC,WAAW,EAAC,KAAK,EAAC,SAAS,EAAC,IAAI,EAAC,OAAO;YAC3D,oBAAC,MAAM,IAAC,QAAQ,EAAE,CAAC,SAAS,EAAE,OAAO,EAAE,kBAAkB,aAEhD;YACT,oBAAC,MAAM,IACL,QAAQ,EAAE,CAAC,SAAS,EACpB,OAAO,EAAE,GAAG,EAAE;oBACZ,aAAa,CAAC,IAAI,CAAC,CAAA;gBACrB,CAAC,gBACU,qBAAqB;gBAEhC,oBAAC,iBAAiB,OAAG,CACd,CACG;QACd,oBAAC,MAAM,IACL,IAAI,EAAE,UAAU,EAChB,OAAO,EAAE,GAAG,EAAE;gBACZ,aAAa,CAAC,KAAK,CAAC,CAAA;YACtB,CAAC;YAED,oBAAC,WAAW,yBAA6B;YACzC,oBAAC,aAAa;gBACZ,oBAAC,QAAQ;oBACP,oBAAC,QAAQ,IAAC,OAAO,EAAE,kBAAkB;wBACnC;4BACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,uCAEd;4BACb,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,gBAAgB,yEAGrC,CACT,CACG;oBACX,oBAAC,QAAQ,IACP,OAAO,EAAE,KAAK,IAAI,EAAE;4BAClB,aAAa,CAAC,KAAK,CAAC,CAAA;4BACpB,IAAI,CAAC,SAAS,IAAI,CAAC,kBAAkB,EAAE,CAAC;gCACtC,OAAM;4BACR,CAAC;4BACD,IAAI,CAAC;gCACH,MAAM,mBAAmB,CAAC;oCACxB,OAAO;oCACP,IAAI;oCACJ,OAAO;oCACP,kBAAkB;oCAClB,SAAS;oCACT,aAAa;iCACd,CAAC,CAAA;4BACJ,CAAC;4BAAC,OAAO,CAAC,EAAE,CAAC;gCACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gCAChB,OAAO,CAAC,WAAW,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAA;4BAChC,CAAC;4BACD,WAAW,EAAE,CAAA;wBACf,CAAC;wBAED;4BACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,wCAEd;4BACb,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,gBAAgB,8DAErC,CACT,CACG;oBACV,gBAAgB,EAAE;wBACjB,CAAC,CAAC;4BACE,oBAAC,QAAQ,IACP,GAAG,EAAC,KAAK,EACT,OAAO,EAAE,GAAG,EAAE;oCACZ,aAAa,CAAC,KAAK,CAAC,CAAA;oCACpB,IAAI,CAAC,kBAAkB,IAAI,CAAC,SAAS,EAAE,CAAC;wCACtC,OAAM;oCACR,CAAC;oCACD,aAAa,CAAC;wCACZ,OAAO;wCACP,IAAI;wCACJ,OAAO;wCACP,kBAAkB;wCAClB,SAAS;qCACV,CAAC,CAAA;oCAEF,WAAW,EAAE,CAAA;gCACf,CAAC;gCAED;oCACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,sBAA6B;oCACxD,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,gBAAgB,qDAErC,CACT,CACG;4BACX,oBAAC,QAAQ,IACP,GAAG,EAAC,QAAQ,EACZ,OAAO,EAAE,GAAG,EAAE;oCACZ,aAAa,CAAC,KAAK,CAAC,CAAA;oCACpB,IAAI,CAAC,kBAAkB,IAAI,CAAC,SAAS,EAAE,CAAC;wCACtC,OAAM;oCACR,CAAC;oCACD,0BAA0B,CAAC;wCACzB,OAAO;wCACP,IAAI;wCACJ,OAAO;wCACP,kBAAkB;wCAClB,SAAS;wCACT,GAAG;wCACH,8BAA8B,EAC5B,2BAA2B,EAAE,GAAG;wCAClC,kBAAkB;qCACnB,CAAC,CAAA;oCAEF,WAAW,EAAE,CAAA;gCACf,CAAC;gCAED;oCACE,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,qCAEd;oCACb,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAC,gBAAgB,+CAErC,CACT,CACG;yBACZ;wBACH,CAAC,CAAC,IAAI,CACC,CACG,CACT,CACR,CACJ,CAAA;AACH,CAAC"}

package/dist/LaunchProteinView/components/TranscriptSelector.d.ts CHANGED Viewed

@@ -3,7 +3,7 @@ import type { Feature } from '@jbrowse/core/util';
 export default function TranscriptSelector({ val, setVal, isoforms, isoformSequences, structureSequence, feature, disabled, }: {
     isoforms: Feature[];
     feature: Feature;
-    val: string;
+    val: string | undefined;
     setVal: (str: string) => void;
     structureSequence?: string;
     isoformSequences: Record<string, {