jbrowse-plugin-protein3d 0.0.2 → 0.0.3

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Files changed (84) hide show
  1. package/dist/LaunchProteinView/components/AlphaFoldDBSearch.js +44 -27
  2. package/dist/LaunchProteinView/components/AlphaFoldDBSearch.js.map +1 -1
  3. package/dist/LaunchProteinView/components/AlphaFoldDBSearchStatus.d.ts +7 -4
  4. package/dist/LaunchProteinView/components/AlphaFoldDBSearchStatus.js +30 -11
  5. package/dist/LaunchProteinView/components/AlphaFoldDBSearchStatus.js.map +1 -1
  6. package/dist/LaunchProteinView/components/HelpDialog.js +10 -3
  7. package/dist/LaunchProteinView/components/HelpDialog.js.map +1 -1
  8. package/dist/LaunchProteinView/components/LaunchProteinViewDialog.js +3 -7
  9. package/dist/LaunchProteinView/components/LaunchProteinViewDialog.js.map +1 -1
  10. package/dist/LaunchProteinView/components/MSATable.d.ts +10 -0
  11. package/dist/LaunchProteinView/components/MSATable.js +53 -0
  12. package/dist/LaunchProteinView/components/MSATable.js.map +1 -0
  13. package/dist/LaunchProteinView/components/TranscriptSelector.d.ts +7 -3
  14. package/dist/LaunchProteinView/components/TranscriptSelector.js +22 -7
  15. package/dist/LaunchProteinView/components/TranscriptSelector.js.map +1 -1
  16. package/dist/LaunchProteinView/components/UserProvidedStructure.js +56 -43
  17. package/dist/LaunchProteinView/components/UserProvidedStructure.js.map +1 -1
  18. package/dist/LaunchProteinView/components/calculateProteinSequence.js.map +1 -0
  19. package/dist/LaunchProteinView/components/useIsoformProteinSequences.d.ts +14 -0
  20. package/dist/LaunchProteinView/{useProteinSequences.js → components/useIsoformProteinSequences.js} +11 -6
  21. package/dist/LaunchProteinView/components/useIsoformProteinSequences.js.map +1 -0
  22. package/dist/LaunchProteinView/components/useLocalStructureFileSequence.d.ts +7 -0
  23. package/dist/LaunchProteinView/components/useLocalStructureFileSequence.js +44 -0
  24. package/dist/LaunchProteinView/components/useLocalStructureFileSequence.js.map +1 -0
  25. package/dist/LaunchProteinView/{useMyGeneInfo.d.ts → components/useMyGeneInfoUniprotIdLookup.d.ts} +2 -2
  26. package/dist/LaunchProteinView/{useMyGeneInfo.js → components/useMyGeneInfoUniprotIdLookup.js} +15 -10
  27. package/dist/LaunchProteinView/components/useMyGeneInfoUniprotIdLookup.js.map +1 -0
  28. package/dist/LaunchProteinView/components/useRemoteStructureFileSequence.d.ts +7 -0
  29. package/dist/LaunchProteinView/components/useRemoteStructureFileSequence.js +42 -0
  30. package/dist/LaunchProteinView/components/useRemoteStructureFileSequence.js.map +1 -0
  31. package/dist/LaunchProteinView/{util.d.ts → components/util.d.ts} +0 -10
  32. package/dist/LaunchProteinView/{util.js → components/util.js} +3 -24
  33. package/dist/LaunchProteinView/components/util.js.map +1 -0
  34. package/dist/LaunchProteinView/index.js +1 -1
  35. package/dist/LaunchProteinView/index.js.map +1 -1
  36. package/dist/ProteinView/components/Header.js +1 -1
  37. package/dist/ProteinView/components/Header.js.map +1 -1
  38. package/dist/ProteinView/components/SplitString.js +1 -1
  39. package/dist/ProteinView/components/SplitString.js.map +1 -1
  40. package/dist/ProteinView/model.d.ts +8 -4
  41. package/dist/ProteinView/model.js +39 -13
  42. package/dist/ProteinView/model.js.map +1 -1
  43. package/dist/index.js +0 -9
  44. package/dist/index.js.map +1 -1
  45. package/dist/jbrowse-plugin-protein3d.umd.production.min.js +147 -148
  46. package/dist/jbrowse-plugin-protein3d.umd.production.min.js.map +4 -4
  47. package/package.json +2 -2
  48. package/src/LaunchProteinView/components/AlphaFoldDBSearch.tsx +98 -47
  49. package/src/LaunchProteinView/components/AlphaFoldDBSearchStatus.tsx +65 -25
  50. package/src/LaunchProteinView/components/HelpDialog.tsx +35 -7
  51. package/src/LaunchProteinView/components/LaunchProteinViewDialog.tsx +1 -10
  52. package/src/LaunchProteinView/components/MSATable.tsx +96 -0
  53. package/src/LaunchProteinView/components/TranscriptSelector.tsx +36 -10
  54. package/src/LaunchProteinView/components/UserProvidedStructure.tsx +110 -64
  55. package/src/LaunchProteinView/{useProteinSequences.ts → components/useIsoformProteinSequences.ts} +12 -7
  56. package/src/LaunchProteinView/components/useLocalStructureFileSequence.ts +53 -0
  57. package/src/LaunchProteinView/{useMyGeneInfo.ts → components/useMyGeneInfoUniprotIdLookup.ts} +16 -11
  58. package/src/LaunchProteinView/components/useRemoteStructureFileSequence.ts +44 -0
  59. package/src/LaunchProteinView/{util.ts → components/util.ts} +3 -35
  60. package/src/LaunchProteinView/index.ts +1 -1
  61. package/src/ProteinView/components/Header.tsx +7 -5
  62. package/src/ProteinView/components/SplitString.tsx +1 -1
  63. package/src/ProteinView/model.ts +40 -12
  64. package/src/index.ts +1 -12
  65. package/dist/LaunchProteinView/calculateProteinSequence.js.map +0 -1
  66. package/dist/LaunchProteinView/components/PreLoadedStructureMapping.d.ts +0 -8
  67. package/dist/LaunchProteinView/components/PreLoadedStructureMapping.js +0 -72
  68. package/dist/LaunchProteinView/components/PreLoadedStructureMapping.js.map +0 -1
  69. package/dist/LaunchProteinView/components/useCheckAlphaFoldDBExistence.d.ts +0 -7
  70. package/dist/LaunchProteinView/components/useCheckAlphaFoldDBExistence.js +0 -26
  71. package/dist/LaunchProteinView/components/useCheckAlphaFoldDBExistence.js.map +0 -1
  72. package/dist/LaunchProteinView/useMyGeneInfo.js.map +0 -1
  73. package/dist/LaunchProteinView/useProteinSequences.d.ts +0 -10
  74. package/dist/LaunchProteinView/useProteinSequences.js.map +0 -1
  75. package/dist/LaunchProteinView/util.js.map +0 -1
  76. package/dist/ProteinModelSessionExtension.d.ts +0 -11
  77. package/dist/ProteinModelSessionExtension.js +0 -53
  78. package/dist/ProteinModelSessionExtension.js.map +0 -1
  79. package/src/LaunchProteinView/components/PreLoadedStructureMapping.tsx +0 -153
  80. package/src/LaunchProteinView/components/useCheckAlphaFoldDBExistence.ts +0 -31
  81. package/src/ProteinModelSessionExtension.ts +0 -71
  82. /package/dist/LaunchProteinView/{calculateProteinSequence.d.ts → components/calculateProteinSequence.d.ts} +0 -0
  83. /package/dist/LaunchProteinView/{calculateProteinSequence.js → components/calculateProteinSequence.js} +0 -0
  84. /package/src/LaunchProteinView/{calculateProteinSequence.ts → components/calculateProteinSequence.ts} +0 -0

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