jbrowse-plugin-msaview 3.1.0 → 3.3.0

package/dist/MsaViewPanel/model.js

@@ -6,6 +6,12 @@ import { autorun } from 'mobx';
 import { MSAModelF } from 'react-msaview';
 import { autoLoadProteinDomains, launchBlastIfNeeded, launchOrthologsIfNeeded, loadStoredData, observeProteinHighlights, processInit, runCleanup, storeDataToIndexedDB, syncGenomeHoverToMsaColumn, } from './afterCreateAutoruns';
 import { msaCoordToGenomeCoord, msaCoordToGenomeRegions, } from './msaCoordToGenomeCoord';
+/**
+ * Where the ortholog set comes from. NCBI's sets cover vertebrates and
+ * insects; PANTHER's span its 144 reference proteomes, human to yeast to
+ * Arabidopsis, so a gene from outside NCBI's scope aligns only through it.
+ */
+export const orthologSources = ['ncbi', 'panther'];
 /**
  * #stateModel MsaViewPlugin
  * extends

package/dist/index.js

@@ -8,6 +8,7 @@ import BgzipFastaMsaAdapterF from './BgzipFastaMsaAdapter';
 import LaunchMsaViewF from './LaunchMsaView';
 import LaunchMsaViewExtensionPointF from './LaunchMsaViewExtensionPoint';
 import MsaViewF from './MsaViewPanel';
+import { launchMsaView } from './utils/launchMsaView';
 import { version } from './version';
 export default class MsaViewPlugin extends Plugin {
     constructor() {
@@ -49,7 +50,9 @@ export default class MsaViewPlugin extends Plugin {
                 label: 'Multiple sequence alignment view',
                 icon: GridOn,
                 onClick: (session) => {
-                    session.addView('MsaView', {});
+                    // stacked, by default: nothing was launched from, so there is no
+                    // connected view for it to sit beside
+                    launchMsaView(session, {});
                 },
             });
         }