jbrowse-plugin-msaview 2.8.0 → 2.8.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/MsaViewPanel/model.d.ts +4 -4
- package/dist/jbrowse-plugin-msaview.umd.production.min.js +2 -2
- package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +3 -3
- package/dist/utils/ncbiOrthologs.js +8 -2
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/package.json +2 -2
- package/src/utils/ncbiOrthologs.ts +8 -2
- package/src/version.ts +1 -1
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@@ -23,8 +23,14 @@ const DATASETS = 'https://api.ncbi.nlm.nih.gov/datasets/v2';
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const EUTILS = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils';
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// The species panel offered in the launch dialog, ordered from the reference
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// outward so a run that finds only close relatives still reads as a ladder.
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// Orthologs absent for a given gene are skipped rather than erroring
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//
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// Orthologs absent for a given gene are skipped rather than erroring.
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//
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// The index order is the order the sequences are SUBMITTED in
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// (`COMMON_TAX_RANK` below sorts `fetchOrthologGenes`' return), not the order the
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// rows are drawn in: the view lays rows out by the guide tree the aligner returns,
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// so a run on this list comes out grouped by relatedness rather than by this
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// list's own sequence. Reordering here changes what Clustal is handed, not the
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// picture.
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//
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// THE MAMMALS EARN THEIR PLACE, and the reason is measured rather than aesthetic.
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// The thirteen this list used to hold were one per major clade, which reads well
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package/dist/version.d.ts
CHANGED
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@@ -1 +1 @@
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export declare const version = "2.8.
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export declare const version = "2.8.1";
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package/dist/version.js
CHANGED
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@@ -1 +1 @@
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export const version = '2.8.
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export const version = '2.8.1';
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package/package.json
CHANGED
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@@ -1,5 +1,5 @@
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{
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"version": "2.8.
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"version": "2.8.1",
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"license": "MIT",
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"name": "jbrowse-plugin-msaview",
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"repository": {
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@@ -51,7 +51,7 @@
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"puppeteer": "^25.3.0",
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"react": "^19.2.8",
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"react-dom": "^19.2.8",
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"react-msaview": "^5.7.
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"react-msaview": "^5.7.2",
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"rimraf": "^6.1.3",
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"rxjs": "^7.8.2",
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"serve": "^14.2.6",
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@@ -26,8 +26,14 @@ const EUTILS = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils'
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// The species panel offered in the launch dialog, ordered from the reference
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28
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// outward so a run that finds only close relatives still reads as a ladder.
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29
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-
// Orthologs absent for a given gene are skipped rather than erroring
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-
//
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+
// Orthologs absent for a given gene are skipped rather than erroring.
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+
//
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+
// The index order is the order the sequences are SUBMITTED in
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+
// (`COMMON_TAX_RANK` below sorts `fetchOrthologGenes`' return), not the order the
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// rows are drawn in: the view lays rows out by the guide tree the aligner returns,
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+
// so a run on this list comes out grouped by relatedness rather than by this
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// list's own sequence. Reordering here changes what Clustal is handed, not the
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// picture.
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//
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// THE MAMMALS EARN THEIR PLACE, and the reason is measured rather than aesthetic.
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// The thirteen this list used to hold were one per major clade, which reads well
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package/src/version.ts
CHANGED
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@@ -1 +1 @@
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1
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export const version = '2.8.
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export const version = '2.8.1'
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