jbrowse-plugin-msaview 2.6.6 → 2.6.8

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Files changed (49) hide show
  1. package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.js +1 -1
  2. package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js +0 -3
  3. package/dist/LaunchMsaView/components/ManualMSALoader/launchView.d.ts +2 -3
  4. package/dist/LaunchMsaView/components/ManualMSALoader/launchView.js +3 -2
  5. package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js +10 -1
  6. package/dist/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.d.ts +2 -1
  7. package/dist/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.js +2 -1
  8. package/dist/LaunchMsaView/components/NCBIBlastQuery/useCachedBlastResults.js +2 -2
  9. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js +1 -2
  10. package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.d.ts +2 -3
  11. package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.js +3 -2
  12. package/dist/LaunchMsaView/components/calculateProteinSequence.d.ts +1 -2
  13. package/dist/LaunchMsaView/components/calculateProteinSequence.js +4 -2
  14. package/dist/LaunchMsaView/components/useTranscriptSelection.js +14 -11
  15. package/dist/MsaViewPanel/msaDataStore.js +7 -2
  16. package/dist/MsaViewPanel/util.d.ts +0 -11
  17. package/dist/MsaViewPanel/util.js +0 -7
  18. package/dist/jbrowse-plugin-msaview.umd.production.min.js +25 -25
  19. package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +3 -3
  20. package/dist/utils/blastCache.js +13 -5
  21. package/dist/utils/domainCache.js +7 -2
  22. package/dist/utils/fetch.d.ts +0 -2
  23. package/dist/utils/fetch.js +0 -21
  24. package/dist/utils/ncbiDomains.js +10 -3
  25. package/dist/utils/taxonomyNames.js +7 -2
  26. package/dist/version.d.ts +1 -1
  27. package/dist/version.js +1 -1
  28. package/package.json +1 -2
  29. package/src/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.ts +1 -1
  30. package/src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx +0 -3
  31. package/src/LaunchMsaView/components/ManualMSALoader/launchView.ts +4 -8
  32. package/src/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.tsx +17 -1
  33. package/src/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.ts +3 -0
  34. package/src/LaunchMsaView/components/NCBIBlastQuery/useCachedBlastResults.ts +2 -1
  35. package/src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx +1 -2
  36. package/src/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.ts +4 -4
  37. package/src/LaunchMsaView/components/calculateProteinSequence.ts +4 -3
  38. package/src/LaunchMsaView/components/useTranscriptSelection.ts +16 -16
  39. package/src/MsaViewPanel/msaDataStore.ts +8 -2
  40. package/src/MsaViewPanel/util.ts +0 -24
  41. package/src/utils/blastCache.ts +14 -3
  42. package/src/utils/domainCache.ts +8 -2
  43. package/src/utils/fetch.ts +0 -28
  44. package/src/utils/ncbiDomains.ts +10 -3
  45. package/src/utils/taxonomyNames.ts +8 -2
  46. package/src/version.ts +1 -1
  47. package/dist/LaunchMsaView/components/ManualMSALoader/fetchGeneList.d.ts +0 -1
  48. package/dist/LaunchMsaView/components/ManualMSALoader/fetchGeneList.js +0 -11
  49. package/src/LaunchMsaView/components/ManualMSALoader/fetchGeneList.ts +0 -13
package/src/LaunchMsaView/components/ManualMSALoader/fetchGeneList.ts DELETED
@@ -1,13 +0,0 @@
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- export async function fetchGeneList() {
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- const res = await fetch(
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- 'https://jbrowse.org/demos/msaview/knownCanonical/list.txt',
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- )
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- if (!res.ok) {
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- throw new Error(`HTTP ${res.status} fetching list ${await res.text()}`)
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- }
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- const result = await res.text()
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- return result
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- .split('\n')
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- .map(f => f.trim())
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- .filter(f => !!f)
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- }