jbrowse-plugin-msaview 2.4.2 → 2.4.4

package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js

@@ -12,11 +12,10 @@ export default function LaunchMsaViewDialog({ handleClose, feature, model, }) {
     const datasets = readMsaDatasets(session.jbrowse);
     const hasPreloadedDatasets = !!datasets?.length;
     const [value, setValue] = useState('ncbi_blast');
-    const handleChange = (_event, newValue) => {
-        setValue(newValue);
-    };
     return (React.createElement(Dialog, { maxWidth: "xl", title: "Launch MSA view", open: true, onClose: handleClose },
-        React.createElement(Tabs, { value: value, onChange: handleChange },
+        React.createElement(Tabs, { value: value, onChange: (_event, newValue) => {
+                setValue(newValue);
+            } },
             React.createElement(Tab, { label: "NCBI BLAST query", value: "ncbi_blast" }),
             hasPreloadedDatasets ? (React.createElement(Tab, { label: "Pre-loaded MSA datasets", value: "preloaded_msa" })) : null,
             React.createElement(Tab, { label: "Manual upload", value: "manual_msa" })),

package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js.map

@@ -1 +1 @@
-{"version":3,"file":"LaunchMsaViewDialog.js","sourceRoot":"","sources":["../../../src/LaunchMsaView/components/LaunchMsaViewDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,eAAe,CAAA;AAEzC,OAAO,eAAe,MAAM,mCAAmC,CAAA;AAC/D,OAAO,cAAc,MAAM,iCAAiC,CAAA;AAC5D,OAAO,YAAY,MAAM,sCAAsC,CAAA;AAC/D,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAA;AACtD,OAAO,QAAQ,MAAM,YAAY,CAAA;AAIjC,MAAM,CAAC,OAAO,UAAU,mBAAmB,CAAC,EAC1C,WAAW,EACX,OAAO,EACP,KAAK,GAKN;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,QAAQ,GAAG,eAAe,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;IACjD,MAAM,oBAAoB,GAAG,CAAC,CAAC,QAAQ,EAAE,MAAM,CAAA;IAE/C,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,YAAY,CAAC,CAAA;IAEhD,MAAM,YAAY,GAAG,CAAC,MAA4B,EAAE,QAAgB,EAAE,EAAE;QACtE,QAAQ,CAAC,QAAQ,CAAC,CAAA;IACpB,CAAC,CAAA;IAED,OAAO,CACL,oBAAC,MAAM,IAAC,QAAQ,EAAC,IAAI,EAAC,KAAK,EAAC,iBAAiB,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QACrE,oBAAC,IAAI,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,YAAY;YACxC,oBAAC,GAAG,IAAC,KAAK,EAAC,kBAAkB,EAAC,KAAK,EAAC,YAAY,GAAG;YAClD,oBAAoB,CAAC,CAAC,CAAC,CACtB,oBAAC,GAAG,IAAC,KAAK,EAAC,yBAAyB,EAAC,KAAK,EAAC,eAAe,GAAG,CAC9D,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,GAAG,IAAC,KAAK,EAAC,eAAe,EAAC,KAAK,EAAC,YAAY,GAAG,CAC3C;QACP,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,YAAY;YACxC,oBAAC,cAAc,IACb,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,OAAO,EAChB,KAAK,EAAE,KAAK,GACZ,CACO;QACV,oBAAoB,CAAC,CAAC,CAAC,CACtB,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,eAAe;YAC3C,oBAAC,YAAY,IACX,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO,CACZ,CAAC,CAAC,CAAC,IAAI;QACR,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,YAAY;YACxC,oBAAC,eAAe,IACd,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO,CACJ,CACV,CAAA;AACH,CAAC"}
+{"version":3,"file":"LaunchMsaViewDialog.js","sourceRoot":"","sources":["../../../src/LaunchMsaView/components/LaunchMsaViewDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,eAAe,CAAA;AAEzC,OAAO,eAAe,MAAM,mCAAmC,CAAA;AAC/D,OAAO,cAAc,MAAM,iCAAiC,CAAA;AAC5D,OAAO,YAAY,MAAM,sCAAsC,CAAA;AAC/D,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAA;AACtD,OAAO,QAAQ,MAAM,YAAY,CAAA;AAIjC,MAAM,CAAC,OAAO,UAAU,mBAAmB,CAAC,EAC1C,WAAW,EACX,OAAO,EACP,KAAK,GAKN;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,QAAQ,GAAG,eAAe,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;IACjD,MAAM,oBAAoB,GAAG,CAAC,CAAC,QAAQ,EAAE,MAAM,CAAA;IAE/C,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAEhC,YAAY,CAAC,CAAA;IAEf,OAAO,CACL,oBAAC,MAAM,IAAC,QAAQ,EAAC,IAAI,EAAC,KAAK,EAAC,iBAAiB,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QACrE,oBAAC,IAAI,IACH,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,CAAC,MAAM,EAAE,QAAQ,EAAE,EAAE;gBAC7B,QAAQ,CAAC,QAAQ,CAAC,CAAA;YACpB,CAAC;YAED,oBAAC,GAAG,IAAC,KAAK,EAAC,kBAAkB,EAAC,KAAK,EAAC,YAAY,GAAG;YAClD,oBAAoB,CAAC,CAAC,CAAC,CACtB,oBAAC,GAAG,IAAC,KAAK,EAAC,yBAAyB,EAAC,KAAK,EAAC,eAAe,GAAG,CAC9D,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,GAAG,IAAC,KAAK,EAAC,eAAe,EAAC,KAAK,EAAC,YAAY,GAAG,CAC3C;QACP,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,YAAY;YACxC,oBAAC,cAAc,IACb,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,OAAO,EAChB,KAAK,EAAE,KAAK,GACZ,CACO;QACV,oBAAoB,CAAC,CAAC,CAAC,CACtB,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,eAAe;YAC3C,oBAAC,YAAY,IACX,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO,CACZ,CAAC,CAAC,CAAC,IAAI;QACR,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,YAAY;YACxC,oBAAC,eAAe,IACd,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO,CACJ,CACV,CAAA;AACH,CAAC"}

package/dist/LaunchMsaView/components/LaunchPanelContent.d.ts

@@ -0,0 +1,5 @@
+import React from 'react';
+export default function LaunchPanelContent({ error, children, }: {
+    error?: unknown;
+    children: React.ReactNode;
+}): React.JSX.Element;

package/dist/LaunchMsaView/components/LaunchPanelContent.js

@@ -0,0 +1,16 @@
+import React from 'react';
+import { ErrorMessage } from '@jbrowse/core/ui';
+import { DialogContent } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+const useStyles = makeStyles()({
+    dialogContent: {
+        width: '80em',
+    },
+});
+export default function LaunchPanelContent({ error, children, }) {
+    const { classes } = useStyles();
+    return (React.createElement(DialogContent, { className: classes.dialogContent },
+        error ? React.createElement(ErrorMessage, { error: error }) : null,
+        children));
+}
+//# sourceMappingURL=LaunchPanelContent.js.map

package/dist/LaunchMsaView/components/LaunchPanelContent.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"LaunchPanelContent.js","sourceRoot":"","sources":["../../../src/LaunchMsaView/components/LaunchPanelContent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,OAAO,UAAU,kBAAkB,CAAC,EACzC,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;QAC5C,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAC7C,QAAQ,CACK,CACjB,CAAA;AACH,CAAC"}

package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js

@@ -1,18 +1,17 @@
 import React, { useState } from 'react';
-import { ErrorMessage, FileSelector } from '@jbrowse/core/ui';
-import { getContainingView, getSession } from '@jbrowse/core/util';
-import { Alert, Button, DialogActions, DialogContent, FormControl, FormControlLabel, Radio, RadioGroup, } from '@mui/material';
+import { FileSelector } from '@jbrowse/core/ui';
+import { getSession } from '@jbrowse/core/util';
+import { Alert, FormControl, FormControlLabel, Radio, RadioGroup, } from '@mui/material';
 import { observer } from 'mobx-react';
 import { makeStyles } from 'tss-react/mui';
 import { launchView } from './launchView';
 import TextField2 from '../../../components/TextField2';
-import { getGeneDisplayName } from '../../util';
+import { getGeneDisplayName, getLinearGenomeView } from '../../util';
+import LaunchPanelContent from '../LaunchPanelContent';
+import SubmitCancelActions from '../SubmitCancelActions';
 import TranscriptSelector from '../TranscriptSelector';
 import { useTranscriptSelection } from '../useTranscriptSelection';
 const useStyles = makeStyles()({
-    dialogContent: {
-        width: '80em',
-    },
     textAreaFont: {
         fontFamily: 'Courier New',
     },
@@ -34,7 +33,7 @@ const useStyles = makeStyles()({
 });
 const ManualMSALoader = observer(function PreLoadedMSA2({ model, feature, handleClose, }) {
     const session = getSession(model);
-    const view = getContainingView(model);
+    const view = getLinearGenomeView(model);
     const { classes } = useStyles();
     const [launchViewError, setLaunchViewError] = useState();
     const [inputMethod, setInputMethod] = useState('file');
@@ -43,11 +42,11 @@ const ManualMSALoader = observer(function PreLoadedMSA2({ model, feature, handle
     const [msaFileLocation, setMsaFileLocation] = useState();
     const [treeFileLocation, setTreeFileLocation] = useState();
     const [querySeqName, setQuerySeqName] = useState('');
-    const { options, selectedId, setSelectedId, selectedTranscript, proteinSequence, error, } = useTranscriptSelection({ feature, view });
+    const transcriptSelection = useTranscriptSelection({ feature, view });
+    const { selectedTranscript, error } = transcriptSelection;
     const e = launchViewError ?? error;
     return (React.createElement(React.Fragment, null,
-        React.createElement(DialogContent, { className: classes.dialogContent },
-            e ? React.createElement(ErrorMessage, { error: e }) : null,
+        React.createElement(LaunchPanelContent, { error: e },
             React.createElement(FormControl, { component: "fieldset" },
                 React.createElement(RadioGroup, { row: true, value: inputMethod, onChange: event => {
                         setInputMethod(event.target.value);
@@ -63,16 +62,16 @@ const ManualMSALoader = observer(function PreLoadedMSA2({ model, feature, handle
                 React.createElement(TextField2, { variant: "outlined", name: "Tree", multiline: true, minRows: 5, maxRows: 10, fullWidth: true, placeholder: "Paste newick tree (optional)", value: treeText, onChange: event => {
                         setTreeText(event.target.value);
                     } })))),
-            React.createElement(TranscriptSelector, { feature: feature, options: options, selectedId: selectedId, selectedTranscript: selectedTranscript, onTranscriptChange: setSelectedId, proteinSequence: proteinSequence }),
+            React.createElement(TranscriptSelector, { feature: feature, ...transcriptSelection }),
             React.createElement(TextField2, { variant: "outlined", name: "MSA row name", fullWidth: true, required: true, className: classes.queryNameInput, placeholder: "Row name in MSA that corresponds to the selected transcript", helperText: "Required: Specify the name of the row in your MSA that should be aligned with the selected transcript", value: querySeqName, onChange: event => {
                     setQuerySeqName(event.target.value);
                 } }),
             !querySeqName.trim() ? (React.createElement(Alert, { severity: "warning", className: classes.warningAlert }, "Without specifying the MSA row name, clicking on the MSA will not navigate to the corresponding genome position, and hovering highlights will not work.")) : null),
-        React.createElement(DialogActions, null,
-            React.createElement(Button, { color: "primary", variant: "contained", disabled: !selectedTranscript ||
-                    (inputMethod === 'file' && !msaFileLocation) ||
-                    (inputMethod === 'text' && !msaText.trim()), onClick: () => {
-                    try {
+        React.createElement(SubmitCancelActions, { submitDisabled: !selectedTranscript ||
+                (inputMethod === 'file' && !msaFileLocation) ||
+                (inputMethod === 'text' && !msaText.trim()), onSubmit: () => {
+                try {
+                    if (selectedTranscript) {
                         setLaunchViewError(undefined);
                         launchView({
                             session,
@@ -94,14 +93,12 @@ const ManualMSALoader = observer(function PreLoadedMSA2({ model, feature, handle
                         });
                         handleClose();
                     }
-                    catch (err) {
-                        console.error(err);
-                        setLaunchViewError(err);
-                    }
-                } }, "Submit"),
-            React.createElement(Button, { color: "secondary", variant: "contained", onClick: () => {
-                    handleClose();
-                } }, "Cancel"))));
+                }
+                catch (err) {
+                    console.error(err);
+                    setLaunchViewError(err);
+                }
+            }, onCancel: handleClose })));
 });
 export default ManualMSALoader;
 //# sourceMappingURL=ManualMSALoader.js.map

package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js.map

@@ -1 +1 @@
-{"version":3,"file":"ManualMSALoader.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EACL,KAAK,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,KAAK,EACL,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAA;AACzC,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAC/C,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AASlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,YAAY,EAAE;QACZ,UAAU,EAAE,aAAa;KAC1B;IACD,cAAc,EAAE;QACd,YAAY,EAAE,EAAE;KACjB;IACD,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;IACD,QAAQ,EAAE;QACR,YAAY,EAAE,EAAE;KACjB;IACD,cAAc,EAAE;QACd,SAAS,EAAE,EAAE;KACd;IACD,YAAY,EAAE;QACZ,SAAS,EAAE,EAAE;KACd;CACF,CAAC,CAAA;AAEF,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACtD,KAAK,EACL,OAAO,EACP,WAAW,GAKZ;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAW,CAAA;IACjE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,CAAkB,MAAM,CAAC,CAAA;IACvE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAC1C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAC5C,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtE,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxE,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACpD,MAAM,EACJ,OAAO,EACP,UAAU,EACV,aAAa,EACb,kBAAkB,EAClB,eAAe,EACf,KAAK,GACN,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAE7C,MAAM,CAAC,GAAG,eAAe,IAAI,KAAK,CAAA;IAClC,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,CAAC,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,CAAC,GAAI,CAAC,CAAC,CAAC,IAAI;YACtC,oBAAC,WAAW,IAAC,SAAS,EAAC,UAAU;gBAC/B,oBAAC,UAAU,IACT,GAAG,QACH,KAAK,EAAE,WAAW,EAClB,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,cAAc,CAAC,KAAK,CAAC,MAAM,CAAC,KAAwB,CAAC,CAAA;oBACvD,CAAC;oBAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,MAAM,EACZ,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB;oBACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,MAAM,EACZ,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB,CACS,CACD;YAEd,6BAAK,SAAS,EAAE,OAAO,CAAC,cAAc,IACnC,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,CACxB,6BAAK,SAAS,EAAE,OAAO,CAAC,aAAa;gBACnC,oBAAC,YAAY,IACX,IAAI,EAAC,6EAA6E,EAClF,MAAM,QACN,QAAQ,EAAE,eAAe,EACzB,WAAW,EAAE,kBAAkB,GAC/B;gBACF,oBAAC,YAAY,IACX,IAAI,EAAC,oDAAoD,EACzD,MAAM,QACN,QAAQ,EAAE,gBAAgB,EAC1B,WAAW,EAAE,mBAAmB,GAChC,CACE,CACP,CAAC,CAAC,CAAC,CACF;gBACE,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,IAAI,EAAC,KAAK,EACV,SAAS,QACT,OAAO,EAAE,CAAC,EACV,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,EAAE,EACX,SAAS,QACT,WAAW,EAAC,gBAAgB,EAC5B,KAAK,EAAE,OAAO,EACd,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBAChC,CAAC,GACD;gBACF,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,IAAI,EAAC,MAAM,EACX,SAAS,QACT,OAAO,EAAE,CAAC,EACV,OAAO,EAAE,EAAE,EACX,SAAS,QACT,WAAW,EAAC,8BAA8B,EAC1C,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,WAAW,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBACjC,CAAC,GACD,CACD,CACJ,CACG;YAEN,oBAAC,kBAAkB,IACjB,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,OAAO,EAChB,UAAU,EAAE,UAAU,EACtB,kBAAkB,EAAE,kBAAkB,EACtC,kBAAkB,EAAE,aAAa,EACjC,eAAe,EAAE,eAAe,GAChC;YAEF,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,IAAI,EAAC,cAAc,EACnB,SAAS,QACT,QAAQ,QACR,SAAS,EAAE,OAAO,CAAC,cAAc,EACjC,WAAW,EAAC,6DAA6D,EACzE,UAAU,EAAC,uGAAuG,EAClH,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,eAAe,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBACrC,CAAC,GACD;YAED,CAAC,YAAY,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CACtB,oBAAC,KAAK,IAAC,QAAQ,EAAC,SAAS,EAAC,SAAS,EAAE,OAAO,CAAC,YAAY,8JAIjD,CACT,CAAC,CAAC,CAAC,IAAI,CACM;QAEhB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,QAAQ,EACN,CAAC,kBAAkB;oBACnB,CAAC,WAAW,KAAK,MAAM,IAAI,CAAC,eAAe,CAAC;oBAC5C,CAAC,WAAW,KAAK,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,EAE7C,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,CAAC;wBACH,kBAAkB,CAAC,SAAS,CAAC,CAAA;wBAC7B,UAAU,CAAC;4BACT,OAAO;4BACP,YAAY,EAAE,kBAAkB,CAAC,kBAAkB,CAAC;4BACpD,IAAI;4BACJ,OAAO,EAAE,kBAAmB;4BAC5B,YAAY,EAAE,YAAY,CAAC,IAAI,EAAE;4BACjC,GAAG,CAAC,WAAW,KAAK,MAAM;gCACxB,CAAC,CAAC;oCACE,aAAa,EAAE,eAAe;oCAC9B,cAAc,EAAE,gBAAgB;iCACjC;gCACH,CAAC,CAAC;oCACE,IAAI,EAAE;wCACJ,GAAG,EAAE,OAAO;wCACZ,IAAI,EAAE,QAAQ;qCACf;iCACF,CAAC;yBACP,CAAC,CAAA;wBAEF,WAAW,EAAE,CAAA;oBACf,CAAC;oBAAC,OAAO,GAAG,EAAE,CAAC;wBACb,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;wBAClB,kBAAkB,CAAC,GAAG,CAAC,CAAA;oBACzB,CAAC;gBACH,CAAC,aAGM;YACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
+{"version":3,"file":"ManualMSALoader.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EACL,KAAK,EACL,WAAW,EACX,gBAAgB,EAChB,KAAK,EACL,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAA;AACzC,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,kBAAkB,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AACpE,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,mBAAmB,MAAM,wBAAwB,CAAA;AACxD,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AAQlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,YAAY,EAAE;QACZ,UAAU,EAAE,aAAa;KAC1B;IACD,cAAc,EAAE;QACd,YAAY,EAAE,EAAE;KACjB;IACD,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;IACD,QAAQ,EAAE;QACR,YAAY,EAAE,EAAE;KACjB;IACD,cAAc,EAAE;QACd,SAAS,EAAE,EAAE;KACd;IACD,YAAY,EAAE;QACZ,SAAS,EAAE,EAAE;KACd;CACF,CAAC,CAAA;AAEF,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACtD,KAAK,EACL,OAAO,EACP,WAAW,GAKZ;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,mBAAmB,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAW,CAAA;IACjE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,CAAkB,MAAM,CAAC,CAAA;IACvE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAC1C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAC5C,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtE,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxE,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACpD,MAAM,mBAAmB,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IACrE,MAAM,EAAE,kBAAkB,EAAE,KAAK,EAAE,GAAG,mBAAmB,CAAA;IAEzD,MAAM,CAAC,GAAG,eAAe,IAAI,KAAK,CAAA;IAClC,OAAO,CACL;QACE,oBAAC,kBAAkB,IAAC,KAAK,EAAE,CAAC;YAC1B,oBAAC,WAAW,IAAC,SAAS,EAAC,UAAU;gBAC/B,oBAAC,UAAU,IACT,GAAG,QACH,KAAK,EAAE,WAAW,EAClB,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,cAAc,CAAC,KAAK,CAAC,MAAM,CAAC,KAAwB,CAAC,CAAA;oBACvD,CAAC;oBAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,MAAM,EACZ,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB;oBACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,MAAM,EACZ,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB,CACS,CACD;YAEd,6BAAK,SAAS,EAAE,OAAO,CAAC,cAAc,IACnC,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,CACxB,6BAAK,SAAS,EAAE,OAAO,CAAC,aAAa;gBACnC,oBAAC,YAAY,IACX,IAAI,EAAC,6EAA6E,EAClF,MAAM,QACN,QAAQ,EAAE,eAAe,EACzB,WAAW,EAAE,kBAAkB,GAC/B;gBACF,oBAAC,YAAY,IACX,IAAI,EAAC,oDAAoD,EACzD,MAAM,QACN,QAAQ,EAAE,gBAAgB,EAC1B,WAAW,EAAE,mBAAmB,GAChC,CACE,CACP,CAAC,CAAC,CAAC,CACF;gBACE,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,IAAI,EAAC,KAAK,EACV,SAAS,QACT,OAAO,EAAE,CAAC,EACV,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,EAAE,EACX,SAAS,QACT,WAAW,EAAC,gBAAgB,EAC5B,KAAK,EAAE,OAAO,EACd,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBAChC,CAAC,GACD;gBACF,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,IAAI,EAAC,MAAM,EACX,SAAS,QACT,OAAO,EAAE,CAAC,EACV,OAAO,EAAE,EAAE,EACX,SAAS,QACT,WAAW,EAAC,8BAA8B,EAC1C,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,WAAW,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBACjC,CAAC,GACD,CACD,CACJ,CACG;YAEN,oBAAC,kBAAkB,IAAC,OAAO,EAAE,OAAO,KAAM,mBAAmB,GAAI;YAEjE,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,IAAI,EAAC,cAAc,EACnB,SAAS,QACT,QAAQ,QACR,SAAS,EAAE,OAAO,CAAC,cAAc,EACjC,WAAW,EAAC,6DAA6D,EACzE,UAAU,EAAC,uGAAuG,EAClH,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,eAAe,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBACrC,CAAC,GACD;YAED,CAAC,YAAY,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CACtB,oBAAC,KAAK,IAAC,QAAQ,EAAC,SAAS,EAAC,SAAS,EAAE,OAAO,CAAC,YAAY,8JAIjD,CACT,CAAC,CAAC,CAAC,IAAI,CACW;QAErB,oBAAC,mBAAmB,IAClB,cAAc,EACZ,CAAC,kBAAkB;gBACnB,CAAC,WAAW,KAAK,MAAM,IAAI,CAAC,eAAe,CAAC;gBAC5C,CAAC,WAAW,KAAK,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,EAE7C,QAAQ,EAAE,GAAG,EAAE;gBACb,IAAI,CAAC;oBACH,IAAI,kBAAkB,EAAE,CAAC;wBACvB,kBAAkB,CAAC,SAAS,CAAC,CAAA;wBAC7B,UAAU,CAAC;4BACT,OAAO;4BACP,YAAY,EAAE,kBAAkB,CAAC,kBAAkB,CAAC;4BACpD,IAAI;4BACJ,OAAO,EAAE,kBAAkB;4BAC3B,YAAY,EAAE,YAAY,CAAC,IAAI,EAAE;4BACjC,GAAG,CAAC,WAAW,KAAK,MAAM;gCACxB,CAAC,CAAC;oCACE,aAAa,EAAE,eAAe;oCAC9B,cAAc,EAAE,gBAAgB;iCACjC;gCACH,CAAC,CAAC;oCACE,IAAI,EAAE;wCACJ,GAAG,EAAE,OAAO;wCACZ,IAAI,EAAE,QAAQ;qCACf;iCACF,CAAC;yBACP,CAAC,CAAA;wBACF,WAAW,EAAE,CAAA;oBACf,CAAC;gBACH,CAAC;gBAAC,OAAO,GAAG,EAAE,CAAC;oBACb,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;oBAClB,kBAAkB,CAAC,GAAG,CAAC,CAAA;gBACzB,CAAC;YACH,CAAC,EACD,QAAQ,EAAE,WAAW,GACrB,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}

package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js

@@ -1,13 +1,12 @@
 import React, { useMemo, useState } from 'react';
 import { ErrorMessage } from '@jbrowse/core/ui';
-import { getContainingView } from '@jbrowse/core/util';
 import DeleteIcon from '@mui/icons-material/Delete';
 import { Button, IconButton, List, ListItem, ListItemButton, ListItemText, Typography, } from '@mui/material';
 import { observer } from 'mobx-react';
 import { makeStyles } from 'tss-react/mui';
 import { blastLaunchViewFromCache } from './blastLaunchView';
 import { useCachedBlastResults } from './useCachedBlastResults';
-import { getGeneIdentifiers } from '../../util';
+import { getGeneIdentifiers, getLinearGenomeView } from '../../util';
 const useStyles = makeStyles()({
     header: {
         display: 'flex',
@@ -21,21 +20,19 @@ const useStyles = makeStyles()({
     },
 });
 function getResultDisplayName(result) {
-    const parts = [];
-    if (result.geneName) {
-        parts.push(result.geneName);
-    }
-    if (result.transcriptName && result.transcriptName !== result.geneName) {
-        parts.push(result.transcriptName);
-    }
-    if (parts.length === 0) {
-        parts.push(result.geneId ?? result.transcriptId ?? 'Unknown');
-    }
-    return parts.join(' - ');
+    const parts = [
+        result.geneName,
+        result.transcriptName !== result.geneName
+            ? result.transcriptName
+            : undefined,
+    ].filter((p) => !!p);
+    return parts.length > 0
+        ? parts.join(' - ')
+        : (result.geneId ?? result.transcriptId ?? 'Unknown');
 }
 const CachedBlastResults = observer(function ({ model, handleClose, feature, }) {
     const { classes } = useStyles();
-    const view = getContainingView(model);
+    const view = getLinearGenomeView(model);
     const [operationError, setOperationError] = useState();
     const geneIds = useMemo(() => getGeneIdentifiers(feature), [feature]);
     const { results, error, isLoading, handleDelete, handleClearAll } = useCachedBlastResults(geneIds);
@@ -48,16 +45,7 @@ const CachedBlastResults = observer(function ({ model, handleClose, feature, })
         handleClose();
     };
     const displayError = error ?? operationError;
-    if (displayError) {
-        return React.createElement(ErrorMessage, { error: displayError });
-    }
-    if (isLoading) {
-        return React.createElement(Typography, null, "Loading cached results...");
-    }
-    if (results.length === 0) {
-        return (React.createElement(Typography, { color: "textSecondary" }, "No cached BLAST results found for this gene. Run a BLAST query to cache results."));
-    }
-    return (React.createElement("div", null,
+    return displayError ? (React.createElement(ErrorMessage, { error: displayError })) : isLoading ? (React.createElement(Typography, null, "Loading cached results...")) : results.length === 0 ? (React.createElement(Typography, { color: "textSecondary" }, "No cached BLAST results found for this gene. Run a BLAST query to cache results.")) : (React.createElement("div", null,
         React.createElement("div", { className: classes.header },
             React.createElement(Typography, { variant: "subtitle1" },
                 "Cached BLAST Results (",

package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js.map

@@ -1 +1 @@
-{"version":3,"file":"CachedBlastResults.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,EACL,MAAM,EACN,UAAU,EACV,IAAI,EACJ,QAAQ,EACR,cAAc,EACd,YAAY,EACZ,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,wBAAwB,EAAE,MAAM,mBAAmB,CAAA;AAC5D,OAAO,EAAE,qBAAqB,EAAE,MAAM,yBAAyB,CAAA;AAC/D,OAAO,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAM/C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,MAAM,EAAE;QACN,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,eAAe;QAC/B,UAAU,EAAE,QAAQ;QACpB,YAAY,EAAE,CAAC;KAChB;IACD,UAAU,EAAE;QACV,SAAS,EAAE,GAAG;QACd,QAAQ,EAAE,MAAM;KACjB;CACF,CAAC,CAAA;AAEF,SAAS,oBAAoB,CAAC,MAAyB;IACrD,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,IAAI,MAAM,CAAC,QAAQ,EAAE,CAAC;QACpB,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAA;IAC7B,CAAC;IACD,IAAI,MAAM,CAAC,cAAc,IAAI,MAAM,CAAC,cAAc,KAAK,MAAM,CAAC,QAAQ,EAAE,CAAC;QACvE,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,cAAc,CAAC,CAAA;IACnC,CAAC;IACD,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,IAAI,MAAM,CAAC,YAAY,IAAI,SAAS,CAAC,CAAA;IAC/D,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;AAC1B,CAAC;AAED,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,EAC5C,KAAK,EACL,WAAW,EACX,OAAO,GAKR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,EAAW,CAAA;IAE/D,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC,kBAAkB,CAAC,OAAO,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IAErE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,YAAY,EAAE,cAAc,EAAE,GAC/D,qBAAqB,CAAC,OAAO,CAAC,CAAA;IAEhC,MAAM,eAAe,GAAG,CAAC,MAAyB,EAAE,EAAE;QACpD,wBAAwB,CAAC;YACvB,IAAI;YACJ,MAAM;YACN,YAAY,EAAE,WAAW,oBAAoB,CAAC,MAAM,CAAC,EAAE;SACxD,CAAC,CAAA;QACF,WAAW,EAAE,CAAA;IACf,CAAC,CAAA;IAED,MAAM,YAAY,GAAG,KAAK,IAAI,cAAc,CAAA;IAC5C,IAAI,YAAY,EAAE,CAAC;QACjB,OAAO,oBAAC,YAAY,IAAC,KAAK,EAAE,YAAY,GAAI,CAAA;IAC9C,CAAC;IAED,IAAI,SAAS,EAAE,CAAC;QACd,OAAO,oBAAC,UAAU,oCAAuC,CAAA;IAC3D,CAAC;IAED,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzB,OAAO,CACL,oBAAC,UAAU,IAAC,KAAK,EAAC,eAAe,uFAGpB,CACd,CAAA;IACH,CAAC;IAED,OAAO,CACL;QACE,6BAAK,SAAS,EAAE,OAAO,CAAC,MAAM;YAC5B,oBAAC,UAAU,IAAC,OAAO,EAAC,WAAW;;gBACN,OAAO,CAAC,MAAM;oBAC1B;YACb,oBAAC,MAAM,IACL,IAAI,EAAC,OAAO,EACZ,KAAK,EAAC,OAAO,EACb,OAAO,EAAE,KAAK,IAAI,EAAE;oBAClB,IAAI,CAAC;wBACH,iBAAiB,CAAC,SAAS,CAAC,CAAA;wBAC5B,MAAM,cAAc,EAAE,CAAA;oBACxB,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,iBAAiB,CAAC,CAAC,CAAC,CAAA;oBACtB,CAAC;gBACH,CAAC,gBAGM,CACL;QACN,oBAAC,IAAI,IAAC,KAAK,QAAC,SAAS,EAAE,OAAO,CAAC,UAAU,IACtC,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACrB,oBAAC,QAAQ,IACP,GAAG,EAAE,MAAM,CAAC,EAAE,EACd,cAAc,QACd,eAAe,EACb,oBAAC,UAAU,IACT,IAAI,EAAC,KAAK,EACV,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,KAAK,EAAC,CAAC,EAAC,EAAE;oBACjB,CAAC,CAAC,eAAe,EAAE,CAAA;oBACnB,IAAI,CAAC;wBACH,iBAAiB,CAAC,SAAS,CAAC,CAAA;wBAC5B,MAAM,YAAY,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;oBAC/B,CAAC;oBAAC,OAAO,GAAG,EAAE,CAAC;wBACb,iBAAiB,CAAC,GAAG,CAAC,CAAA;oBACxB,CAAC;gBACH,CAAC;gBAED,oBAAC,UAAU,IAAC,QAAQ,EAAC,OAAO,GAAG,CACpB;YAGf,oBAAC,cAAc,IACb,OAAO,EAAE,GAAG,EAAE;oBACZ,eAAe,CAAC,MAAM,CAAC,CAAA;gBACzB,CAAC;gBAED,oBAAC,YAAY,IACX,OAAO,EAAE,GAAG,oBAAoB,CAAC,MAAM,CAAC,MAAM,MAAM,CAAC,aAAa,IAAI,MAAM,CAAC,YAAY,KAAK,MAAM,CAAC,YAAY,GAAG,EACpH,SAAS,EAAE,GAAG,IAAI,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC,cAAc,EAAE,WAAW,MAAM,CAAC,eAAe,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,GAC5G,CACa,CACR,CACZ,CAAC,CACG,CACH,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}
+{"version":3,"file":"CachedBlastResults.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,EACL,MAAM,EACN,UAAU,EACV,IAAI,EACJ,QAAQ,EACR,cAAc,EACd,YAAY,EACZ,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,wBAAwB,EAAE,MAAM,mBAAmB,CAAA;AAC5D,OAAO,EAAE,qBAAqB,EAAE,MAAM,yBAAyB,CAAA;AAC/D,OAAO,EAAE,kBAAkB,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AAKpE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,MAAM,EAAE;QACN,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,eAAe;QAC/B,UAAU,EAAE,QAAQ;QACpB,YAAY,EAAE,CAAC;KAChB;IACD,UAAU,EAAE;QACV,SAAS,EAAE,GAAG;QACd,QAAQ,EAAE,MAAM;KACjB;CACF,CAAC,CAAA;AAEF,SAAS,oBAAoB,CAAC,MAAyB;IACrD,MAAM,KAAK,GAAG;QACZ,MAAM,CAAC,QAAQ;QACf,MAAM,CAAC,cAAc,KAAK,MAAM,CAAC,QAAQ;YACvC,CAAC,CAAC,MAAM,CAAC,cAAc;YACvB,CAAC,CAAC,SAAS;KACd,CAAC,MAAM,CAAC,CAAC,CAAC,EAAe,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACjC,OAAO,KAAK,CAAC,MAAM,GAAG,CAAC;QACrB,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC;QACnB,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,IAAI,MAAM,CAAC,YAAY,IAAI,SAAS,CAAC,CAAA;AACzD,CAAC;AAED,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,EAC5C,KAAK,EACL,WAAW,EACX,OAAO,GAKR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,mBAAmB,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,EAAW,CAAA;IAE/D,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC,kBAAkB,CAAC,OAAO,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IAErE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,YAAY,EAAE,cAAc,EAAE,GAC/D,qBAAqB,CAAC,OAAO,CAAC,CAAA;IAEhC,MAAM,eAAe,GAAG,CAAC,MAAyB,EAAE,EAAE;QACpD,wBAAwB,CAAC;YACvB,IAAI;YACJ,MAAM;YACN,YAAY,EAAE,WAAW,oBAAoB,CAAC,MAAM,CAAC,EAAE;SACxD,CAAC,CAAA;QACF,WAAW,EAAE,CAAA;IACf,CAAC,CAAA;IAED,MAAM,YAAY,GAAG,KAAK,IAAI,cAAc,CAAA;IAC5C,OAAO,YAAY,CAAC,CAAC,CAAC,CACpB,oBAAC,YAAY,IAAC,KAAK,EAAE,YAAY,GAAI,CACtC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,CACd,oBAAC,UAAU,oCAAuC,CACnD,CAAC,CAAC,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CACzB,oBAAC,UAAU,IAAC,KAAK,EAAC,eAAe,uFAGpB,CACd,CAAC,CAAC,CAAC,CACF;QACE,6BAAK,SAAS,EAAE,OAAO,CAAC,MAAM;YAC5B,oBAAC,UAAU,IAAC,OAAO,EAAC,WAAW;;gBACN,OAAO,CAAC,MAAM;oBAC1B;YACb,oBAAC,MAAM,IACL,IAAI,EAAC,OAAO,EACZ,KAAK,EAAC,OAAO,EACb,OAAO,EAAE,KAAK,IAAI,EAAE;oBAClB,IAAI,CAAC;wBACH,iBAAiB,CAAC,SAAS,CAAC,CAAA;wBAC5B,MAAM,cAAc,EAAE,CAAA;oBACxB,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,iBAAiB,CAAC,CAAC,CAAC,CAAA;oBACtB,CAAC;gBACH,CAAC,gBAGM,CACL;QACN,oBAAC,IAAI,IAAC,KAAK,QAAC,SAAS,EAAE,OAAO,CAAC,UAAU,IACtC,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACrB,oBAAC,QAAQ,IACP,GAAG,EAAE,MAAM,CAAC,EAAE,EACd,cAAc,QACd,eAAe,EACb,oBAAC,UAAU,IACT,IAAI,EAAC,KAAK,EACV,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,KAAK,EAAC,CAAC,EAAC,EAAE;oBACjB,CAAC,CAAC,eAAe,EAAE,CAAA;oBACnB,IAAI,CAAC;wBACH,iBAAiB,CAAC,SAAS,CAAC,CAAA;wBAC5B,MAAM,YAAY,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;oBAC/B,CAAC;oBAAC,OAAO,GAAG,EAAE,CAAC;wBACb,iBAAiB,CAAC,GAAG,CAAC,CAAA;oBACxB,CAAC;gBACH,CAAC;gBAED,oBAAC,UAAU,IAAC,QAAQ,EAAC,OAAO,GAAG,CACpB;YAGf,oBAAC,cAAc,IACb,OAAO,EAAE,GAAG,EAAE;oBACZ,eAAe,CAAC,MAAM,CAAC,CAAA;gBACzB,CAAC;gBAED,oBAAC,YAAY,IACX,OAAO,EAAE,GAAG,oBAAoB,CAAC,MAAM,CAAC,MAAM,MAAM,CAAC,aAAa,IAAI,MAAM,CAAC,YAAY,KAAK,MAAM,CAAC,YAAY,GAAG,EACpH,SAAS,EAAE,GAAG,IAAI,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC,cAAc,EAAE,WAAW,MAAM,CAAC,eAAe,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,GAC5G,CACa,CACR,CACZ,CAAC,CACG,CACH,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}

package/dist/LaunchMsaView/components/NCBIBlastQuery/MsaAlgorithmSelect.d.ts

@@ -0,0 +1,7 @@
+import React from 'react';
+import type { MsaAlgorithm } from './consts';
+export default function MsaAlgorithmSelect({ value, onChange, className, }: {
+    value: MsaAlgorithm;
+    onChange: (val: MsaAlgorithm) => void;
+    className?: string;
+}): React.JSX.Element;

package/dist/LaunchMsaView/components/NCBIBlastQuery/MsaAlgorithmSelect.js

@@ -0,0 +1,10 @@
+import React from 'react';
+import { MenuItem } from '@mui/material';
+import { msaAlgorithms } from './consts';
+import TextField2 from '../../../components/TextField2';
+export default function MsaAlgorithmSelect({ value, onChange, className, }) {
+    return (React.createElement(TextField2, { variant: "outlined", label: "MSA Algorithm", className: className, select: true, value: value, onChange: event => {
+            onChange(event.target.value);
+        } }, msaAlgorithms.map(val => (React.createElement(MenuItem, { value: val, key: val }, val)))));
+}
+//# sourceMappingURL=MsaAlgorithmSelect.js.map

package/dist/LaunchMsaView/components/NCBIBlastQuery/MsaAlgorithmSelect.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MsaAlgorithmSelect.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/MsaAlgorithmSelect.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAExC,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AACxC,OAAO,UAAU,MAAM,gCAAgC,CAAA;AAIvD,MAAM,CAAC,OAAO,UAAU,kBAAkB,CAAC,EACzC,KAAK,EACL,QAAQ,EACR,SAAS,GAKV;IACC,OAAO,CACL,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,eAAe,EACrB,SAAS,EAAE,SAAS,EACpB,MAAM,QACN,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,KAAK,CAAC,EAAE;YAChB,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,KAAqB,CAAC,CAAA;QAC9C,CAAC,IAEA,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACxB,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS,CACd,CAAA;AACH,CAAC"}

package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js

@@ -1,22 +1,20 @@
 import React, { useMemo, useState } from 'react';
-import { ErrorMessage } from '@jbrowse/core/ui';
-import { getContainingView } from '@jbrowse/core/util';
 import ExpandMoreIcon from '@mui/icons-material/ExpandMore';
-import { Accordion, AccordionDetails, AccordionSummary, Button, DialogActions, DialogContent, MenuItem, Typography, } from '@mui/material';
+import { Accordion, AccordionDetails, AccordionSummary, MenuItem, Typography, } from '@mui/material';
 import { observer } from 'mobx-react';
 import { makeStyles } from 'tss-react/mui';
 import CachedBlastResults from './CachedBlastResults';
+import MsaAlgorithmSelect from './MsaAlgorithmSelect';
 import { blastLaunchView } from './blastLaunchView';
-import { blastDatabaseOptions, blastPrograms, msaAlgorithms } from './consts';
+import { blastDatabaseOptions, blastPrograms } from './consts';
 import { useCachedBlastResults } from './useCachedBlastResults';
 import TextField2 from '../../../components/TextField2';
-import { getGeneDisplayName, getGeneIdentifiers, getTranscriptDisplayName, } from '../../util';
+import { getBlastViewTitle, getGeneIdentifiers, getLinearGenomeView, } from '../../util';
+import LaunchPanelContent from '../LaunchPanelContent';
+import SubmitCancelActions from '../SubmitCancelActions';
 import TranscriptSelector from '../TranscriptSelector';
 import { useTranscriptSelection } from '../useTranscriptSelection';
 const useStyles = makeStyles()({
-    dialogContent: {
-        width: '80em',
-    },
     selectField: {
         width: 150,
     },
@@ -36,19 +34,19 @@ const useStyles = makeStyles()({
 });
 const NCBIBlastAutomaticPanel = observer(function ({ handleClose, feature, model, children, baseUrl, }) {
     const { classes } = useStyles();
-    const view = getContainingView(model);
+    const view = getLinearGenomeView(model);
     const [launchViewError, setLaunchViewError] = useState();
     const [selectedBlastDatabase, setSelectedBlastDatabase] = useState('nr');
     const [selectedMsaAlgorithm, setSelectedMsaAlgorithm] = useState('clustalo');
     const [selectedBlastProgram, setSelectedBlastProgram] = useState('quick-blastp');
     const geneIds = useMemo(() => getGeneIdentifiers(feature), [feature]);
     const { results: cachedResults, error: cachedResultsError } = useCachedBlastResults(geneIds);
-    const { options, selectedId, setSelectedId, selectedTranscript, proteinSequence, error: proteinSequenceError, } = useTranscriptSelection({ feature, view });
-    const e = proteinSequenceError ?? launchViewError ?? cachedResultsError;
+    const transcriptSelection = useTranscriptSelection({ feature, view });
+    const { selectedTranscript, proteinSequence } = transcriptSelection;
+    const e = transcriptSelection.error ?? launchViewError ?? cachedResultsError;
     return (React.createElement(React.Fragment, null,
-        React.createElement(DialogContent, { className: classes.dialogContent },
+        React.createElement(LaunchPanelContent, { error: e },
             children,
-            e ? React.createElement(ErrorMessage, { error: e }) : null,
             React.createElement(TextField2, { variant: "outlined", label: "BLAST database", className: classes.selectField, select: true, value: selectedBlastDatabase, onChange: event => {
                     const newDb = event.target.value;
                     setSelectedBlastDatabase(newDb);
@@ -56,32 +54,27 @@ const NCBIBlastAutomaticPanel = observer(function ({ handleClose, feature, model
                         setSelectedBlastProgram('blastp');
                     }
                 } }, blastDatabaseOptions.map(val => (React.createElement(MenuItem, { value: val, key: val }, val)))),
-            React.createElement(TextField2, { variant: "outlined", label: "MSA Algorithm", className: classes.selectField, select: true, value: selectedMsaAlgorithm, onChange: event => {
-                    setSelectedMsaAlgorithm(event.target.value);
-                } }, msaAlgorithms.map(val => (React.createElement(MenuItem, { value: val, key: val }, val)))),
+            React.createElement(MsaAlgorithmSelect, { className: classes.selectField, value: selectedMsaAlgorithm, onChange: setSelectedMsaAlgorithm }),
             React.createElement("div", { className: classes.databaseFieldContainer },
                 React.createElement(TextField2, { variant: "outlined", label: "BLAST program", disabled: selectedBlastDatabase === 'nr_cluster_seq', className: classes.selectField, select: true, value: selectedBlastProgram, onChange: event => {
                         setSelectedBlastProgram(event.target.value);
                     } }, blastPrograms.map(val => (React.createElement(MenuItem, { value: val, key: val }, val)))),
                 selectedBlastDatabase === 'nr_cluster_seq' ? (React.createElement(Typography, { variant: "subtitle2", className: classes.clusterSeqMessage }, "Can only use blastp on nr_cluster_seq")) : null),
-            React.createElement(TranscriptSelector, { feature: feature, options: options, selectedId: selectedId, selectedTranscript: selectedTranscript, onTranscriptChange: setSelectedId, proteinSequence: proteinSequence }),
+            React.createElement(TranscriptSelector, { feature: feature, ...transcriptSelection }),
             React.createElement(Typography, { className: classes.infoText }, "This panel will automatically submit a query to NCBI. Using blastp can take 10+ minutes to run, quick-blastp is generally a lot faster but is not available for the clustered database. After completion, all the hits will be run through a multiple sequence alignment. Note: we are not able to currently run NCBI COBALT automatically on the BLAST results, even though that is the method NCBI uses on their website. If you need a COBALT alignment, please use the manual approach of submitting BLAST yourself and downloading the resulting files"),
             cachedResults.length > 0 ? (React.createElement(Accordion, { className: classes.cachedResultsAccordion },
                 React.createElement(AccordionSummary, { expandIcon: React.createElement(ExpandMoreIcon, null) },
                     React.createElement(Typography, null, "Previous BLAST Results")),
                 React.createElement(AccordionDetails, null,
                     React.createElement(CachedBlastResults, { model: model, handleClose: handleClose, feature: feature })))) : null),
-        React.createElement(DialogActions, null,
-            React.createElement(Button, { color: "primary", variant: "contained", onClick: () => {
-                    try {
-                        if (!selectedTranscript) {
-                            return;
-                        }
+        React.createElement(SubmitCancelActions, { submitDisabled: !proteinSequence, onSubmit: () => {
+                try {
+                    if (selectedTranscript) {
                         setLaunchViewError(undefined);
                         blastLaunchView({
                             feature: selectedTranscript,
                             view,
-                            newViewTitle: `BLAST - ${getGeneDisplayName(feature)} - ${getTranscriptDisplayName(selectedTranscript)}`,
+                            newViewTitle: getBlastViewTitle(feature, selectedTranscript),
                             blastParams: {
                                 baseUrl,
                                 blastProgram: selectedBlastProgram,
@@ -93,14 +86,12 @@ const NCBIBlastAutomaticPanel = observer(function ({ handleClose, feature, model
                         });
                         handleClose();
                     }
-                    catch (e) {
-                        console.error(e);
-                        setLaunchViewError(e);
-                    }
-                }, disabled: !proteinSequence }, "Submit"),
-            React.createElement(Button, { color: "secondary", variant: "contained", onClick: () => {
-                    handleClose();
-                } }, "Cancel"))));
+                }
+                catch (e) {
+                    console.error(e);
+                    setLaunchViewError(e);
+                }
+            }, onCancel: handleClose })));
 });
 export default NCBIBlastAutomaticPanel;
 //# sourceMappingURL=NCBIBlastAutomaticPanel.js.map

package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js.map

@@ -1 +1 @@
-{"version":3,"file":"NCBIBlastAutomaticPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,cAAc,MAAM,gCAAgC,CAAA;AAC3D,OAAO,EACL,SAAS,EACT,gBAAgB,EAChB,gBAAgB,EAChB,MAAM,EACN,aAAa,EACb,aAAa,EACb,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAA;AACnD,OAAO,EAAE,oBAAoB,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AAC7E,OAAO,EAAE,qBAAqB,EAAE,MAAM,yBAAyB,CAAA;AAC/D,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EACL,kBAAkB,EAClB,kBAAkB,EAClB,wBAAwB,GACzB,MAAM,YAAY,CAAA;AACnB,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AAMlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,WAAW,EAAE;QACX,KAAK,EAAE,GAAG;KACX;IACD,sBAAsB,EAAE;QACtB,OAAO,EAAE,MAAM;KAChB;IACD,iBAAiB,EAAE;QACjB,UAAU,EAAE,CAAC;QACb,YAAY,EAAE,QAAQ;KACvB;IACD,sBAAsB,EAAE;QACtB,SAAS,EAAE,EAAE;KACd;IACD,QAAQ,EAAE;QACR,SAAS,EAAE,EAAE;KACd;CACF,CAAC,CAAA;AAEF,MAAM,uBAAuB,GAAG,QAAQ,CAAC,UAAU,EACjD,WAAW,EACX,OAAO,EACP,KAAK,EACL,QAAQ,EACR,OAAO,GAOR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAW,CAAA;IACjE,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GACrD,QAAQ,CAAgB,IAAI,CAAC,CAAA;IAC/B,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GACnD,QAAQ,CAAe,UAAU,CAAC,CAAA;IACpC,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GACnD,QAAQ,CAAe,cAAc,CAAC,CAAA;IAExC,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC,kBAAkB,CAAC,OAAO,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IACrE,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,KAAK,EAAE,kBAAkB,EAAE,GACzD,qBAAqB,CAAC,OAAO,CAAC,CAAA;IAEhC,MAAM,EACJ,OAAO,EACP,UAAU,EACV,aAAa,EACb,kBAAkB,EAClB,eAAe,EACf,KAAK,EAAE,oBAAoB,GAC5B,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAC7C,MAAM,CAAC,GAAG,oBAAoB,IAAI,eAAe,IAAI,kBAAkB,CAAA;IACvE,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,QAAQ;YACR,CAAC,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,CAAC,GAAI,CAAC,CAAC,CAAC,IAAI;YACtC,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,gBAAgB,EACtB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,MAAM,QACN,KAAK,EAAE,qBAAqB,EAC5B,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,MAAM,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,KAAsB,CAAA;oBACjD,wBAAwB,CAAC,KAAK,CAAC,CAAA;oBAC/B,IAAI,KAAK,KAAK,gBAAgB,EAAE,CAAC;wBAC/B,uBAAuB,CAAC,QAAQ,CAAC,CAAA;oBACnC,CAAC;gBACH,CAAC,IAEA,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAC/B,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;YAEb,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,eAAe,EACrB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,MAAM,QACN,KAAK,EAAE,oBAAoB,EAC3B,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,uBAAuB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAqB,CAAC,CAAA;gBAC7D,CAAC,IAEA,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACxB,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;YAEb,6BAAK,SAAS,EAAE,OAAO,CAAC,sBAAsB;gBAC5C,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,eAAe,EACrB,QAAQ,EAAE,qBAAqB,KAAK,gBAAgB,EACpD,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,MAAM,QACN,KAAK,EAAE,oBAAoB,EAC3B,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,uBAAuB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAqB,CAAC,CAAA;oBAC7D,CAAC,IAEA,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACxB,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;gBACZ,qBAAqB,KAAK,gBAAgB,CAAC,CAAC,CAAC,CAC5C,oBAAC,UAAU,IACT,OAAO,EAAC,WAAW,EACnB,SAAS,EAAE,OAAO,CAAC,iBAAiB,4CAGzB,CACd,CAAC,CAAC,CAAC,IAAI,CACJ;YAEN,oBAAC,kBAAkB,IACjB,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,OAAO,EAChB,UAAU,EAAE,UAAU,EACtB,kBAAkB,EAAE,kBAAkB,EACtC,kBAAkB,EAAE,aAAa,EACjC,eAAe,EAAE,eAAe,GAChC;YAEF,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,QAAQ,kiBAS1B;YAEZ,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAC1B,oBAAC,SAAS,IAAC,SAAS,EAAE,OAAO,CAAC,sBAAsB;gBAClD,oBAAC,gBAAgB,IAAC,UAAU,EAAE,oBAAC,cAAc,OAAG;oBAC9C,oBAAC,UAAU,iCAAoC,CAC9B;gBACnB,oBAAC,gBAAgB;oBACf,oBAAC,kBAAkB,IACjB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,OAAO,GAChB,CACe,CACT,CACb,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,CAAC;wBACH,IAAI,CAAC,kBAAkB,EAAE,CAAC;4BACxB,OAAM;wBACR,CAAC;wBACD,kBAAkB,CAAC,SAAS,CAAC,CAAA;wBAC7B,eAAe,CAAC;4BACd,OAAO,EAAE,kBAAkB;4BAC3B,IAAI;4BACJ,YAAY,EAAE,WAAW,kBAAkB,CAAC,OAAO,CAAC,MAAM,wBAAwB,CAAC,kBAAkB,CAAC,EAAE;4BACxG,WAAW,EAAE;gCACX,OAAO;gCACP,YAAY,EAAE,oBAAoB;gCAClC,aAAa,EAAE,qBAAqB;gCACpC,YAAY,EAAE,oBAAoB;gCAClC,kBAAkB;gCAClB,eAAe;6BAChB;yBACF,CAAC,CAAA;wBACF,WAAW,EAAE,CAAA;oBACf,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,kBAAkB,CAAC,CAAC,CAAC,CAAA;oBACvB,CAAC;gBACH,CAAC,EACD,QAAQ,EAAE,CAAC,eAAe,aAGnB;YACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,uBAAuB,CAAA"}
+{"version":3,"file":"NCBIBlastAutomaticPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEhD,OAAO,cAAc,MAAM,gCAAgC,CAAA;AAC3D,OAAO,EACL,SAAS,EACT,gBAAgB,EAChB,gBAAgB,EAChB,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAA;AACnD,OAAO,EAAE,oBAAoB,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AAC9D,OAAO,EAAE,qBAAqB,EAAE,MAAM,yBAAyB,CAAA;AAC/D,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EACL,iBAAiB,EACjB,kBAAkB,EAClB,mBAAmB,GACpB,MAAM,YAAY,CAAA;AACnB,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,mBAAmB,MAAM,wBAAwB,CAAA;AACxD,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AAKlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,WAAW,EAAE;QACX,KAAK,EAAE,GAAG;KACX;IACD,sBAAsB,EAAE;QACtB,OAAO,EAAE,MAAM;KAChB;IACD,iBAAiB,EAAE;QACjB,UAAU,EAAE,CAAC;QACb,YAAY,EAAE,QAAQ;KACvB;IACD,sBAAsB,EAAE;QACtB,SAAS,EAAE,EAAE;KACd;IACD,QAAQ,EAAE;QACR,SAAS,EAAE,EAAE;KACd;CACF,CAAC,CAAA;AAEF,MAAM,uBAAuB,GAAG,QAAQ,CAAC,UAAU,EACjD,WAAW,EACX,OAAO,EACP,KAAK,EACL,QAAQ,EACR,OAAO,GAOR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,mBAAmB,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAW,CAAA;IACjE,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GACrD,QAAQ,CAAgB,IAAI,CAAC,CAAA;IAC/B,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GACnD,QAAQ,CAAe,UAAU,CAAC,CAAA;IACpC,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GACnD,QAAQ,CAAe,cAAc,CAAC,CAAA;IAExC,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC,kBAAkB,CAAC,OAAO,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IACrE,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,KAAK,EAAE,kBAAkB,EAAE,GACzD,qBAAqB,CAAC,OAAO,CAAC,CAAA;IAEhC,MAAM,mBAAmB,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IACrE,MAAM,EAAE,kBAAkB,EAAE,eAAe,EAAE,GAAG,mBAAmB,CAAA;IACnE,MAAM,CAAC,GAAG,mBAAmB,CAAC,KAAK,IAAI,eAAe,IAAI,kBAAkB,CAAA;IAC5E,OAAO,CACL;QACE,oBAAC,kBAAkB,IAAC,KAAK,EAAE,CAAC;YACzB,QAAQ;YACT,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,gBAAgB,EACtB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,MAAM,QACN,KAAK,EAAE,qBAAqB,EAC5B,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,MAAM,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,KAAsB,CAAA;oBACjD,wBAAwB,CAAC,KAAK,CAAC,CAAA;oBAC/B,IAAI,KAAK,KAAK,gBAAgB,EAAE,CAAC;wBAC/B,uBAAuB,CAAC,QAAQ,CAAC,CAAA;oBACnC,CAAC;gBACH,CAAC,IAEA,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAC/B,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;YAEb,oBAAC,kBAAkB,IACjB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,KAAK,EAAE,oBAAoB,EAC3B,QAAQ,EAAE,uBAAuB,GACjC;YAEF,6BAAK,SAAS,EAAE,OAAO,CAAC,sBAAsB;gBAC5C,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,eAAe,EACrB,QAAQ,EAAE,qBAAqB,KAAK,gBAAgB,EACpD,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,MAAM,QACN,KAAK,EAAE,oBAAoB,EAC3B,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,uBAAuB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAqB,CAAC,CAAA;oBAC7D,CAAC,IAEA,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACxB,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;gBACZ,qBAAqB,KAAK,gBAAgB,CAAC,CAAC,CAAC,CAC5C,oBAAC,UAAU,IACT,OAAO,EAAC,WAAW,EACnB,SAAS,EAAE,OAAO,CAAC,iBAAiB,4CAGzB,CACd,CAAC,CAAC,CAAC,IAAI,CACJ;YAEN,oBAAC,kBAAkB,IAAC,OAAO,EAAE,OAAO,KAAM,mBAAmB,GAAI;YAEjE,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,QAAQ,kiBAS1B;YAEZ,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAC1B,oBAAC,SAAS,IAAC,SAAS,EAAE,OAAO,CAAC,sBAAsB;gBAClD,oBAAC,gBAAgB,IAAC,UAAU,EAAE,oBAAC,cAAc,OAAG;oBAC9C,oBAAC,UAAU,iCAAoC,CAC9B;gBACnB,oBAAC,gBAAgB;oBACf,oBAAC,kBAAkB,IACjB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,OAAO,GAChB,CACe,CACT,CACb,CAAC,CAAC,CAAC,IAAI,CACW;QACrB,oBAAC,mBAAmB,IAClB,cAAc,EAAE,CAAC,eAAe,EAChC,QAAQ,EAAE,GAAG,EAAE;gBACb,IAAI,CAAC;oBACH,IAAI,kBAAkB,EAAE,CAAC;wBACvB,kBAAkB,CAAC,SAAS,CAAC,CAAA;wBAC7B,eAAe,CAAC;4BACd,OAAO,EAAE,kBAAkB;4BAC3B,IAAI;4BACJ,YAAY,EAAE,iBAAiB,CAAC,OAAO,EAAE,kBAAkB,CAAC;4BAC5D,WAAW,EAAE;gCACX,OAAO;gCACP,YAAY,EAAE,oBAAoB;gCAClC,aAAa,EAAE,qBAAqB;gCACpC,YAAY,EAAE,oBAAoB;gCAClC,kBAAkB;gCAClB,eAAe;6BAChB;yBACF,CAAC,CAAA;wBACF,WAAW,EAAE,CAAA;oBACf,CAAC;gBACH,CAAC;gBAAC,OAAO,CAAC,EAAE,CAAC;oBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;oBAChB,kBAAkB,CAAC,CAAC,CAAC,CAAA;gBACvB,CAAC;YACH,CAAC,EACD,QAAQ,EAAE,WAAW,GACrB,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,uBAAuB,CAAA"}

package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.js

@@ -1,20 +1,14 @@
 import React from 'react';
-import { ErrorMessage } from '@jbrowse/core/ui';
-import { getContainingView, shorten2 } from '@jbrowse/core/util';
-import { Button, DialogActions, DialogContent, Typography } from '@mui/material';
+import { shorten2 } from '@jbrowse/core/util';
+import { Button, DialogActions, Typography } from '@mui/material';
 import { observer } from 'mobx-react';
 import { makeStyles } from 'tss-react/mui';
 import ExternalLink from '../../../components/ExternalLink';
-import { cleanProteinSequence } from '../../util';
+import { cleanProteinSequence, getLinearGenomeView } from '../../util';
+import LaunchPanelContent from '../LaunchPanelContent';
 import TranscriptSelector from '../TranscriptSelector';
 import { useTranscriptSelection } from '../useTranscriptSelection';
 const useStyles = makeStyles()({
-    dialogContent: {
-        width: '80em',
-    },
-    textAreaFont: {
-        fontFamily: 'Courier New',
-    },
     ncbiLink: {
         wordBreak: 'break-all',
         margin: 30,
@@ -26,16 +20,16 @@ const useStyles = makeStyles()({
 });
 const NCBIBlastManualPanel = observer(function ({ handleClose, feature, model, children, baseUrl, }) {
     const { classes } = useStyles();
-    const view = getContainingView(model);
-    const { options, selectedId, setSelectedId, selectedTranscript, proteinSequence, error, } = useTranscriptSelection({ feature, view });
+    const view = getLinearGenomeView(model);
+    const transcriptSelection = useTranscriptSelection({ feature, view });
+    const { proteinSequence, error } = transcriptSelection;
     const s2 = cleanProteinSequence(proteinSequence);
     const link = `${baseUrl}?PAGE_TYPE=BlastSearch&PAGE=Proteins&PROGRAM=blastp&QUERY=${s2}`;
     const link2 = `${baseUrl}?PAGE_TYPE=BlastSearch&PAGE=Proteins&PROGRAM=blastp&QUERY=${shorten2(s2, 10)}`;
     return (React.createElement(React.Fragment, null,
-        React.createElement(DialogContent, { className: classes.dialogContent },
+        React.createElement(LaunchPanelContent, { error: error },
             children,
-            error ? React.createElement(ErrorMessage, { error: error }) : null,
-            React.createElement(TranscriptSelector, { feature: feature, options: options, selectedId: selectedId, selectedTranscript: selectedTranscript, onTranscriptChange: setSelectedId, proteinSequence: proteinSequence }),
+            React.createElement(TranscriptSelector, { feature: feature, ...transcriptSelection }),
             proteinSequence ? (React.createElement("div", { className: classes.ncbiLink },
                 "Link to NCBI BLAST: ",
                 React.createElement(ExternalLink, { href: link }, link2))) : null,

package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.js.map

@@ -1 +1 @@
-{"version":3,"file":"NCBIBlastManualPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,iBAAiB,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAA;AAChE,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChF,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,YAAY,MAAM,kCAAkC,CAAA;AAC3D,OAAO,EAAE,oBAAoB,EAAE,MAAM,YAAY,CAAA;AACjD,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AAKlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,YAAY,EAAE;QACZ,UAAU,EAAE,aAAa;KAC1B;IACD,QAAQ,EAAE;QACR,SAAS,EAAE,WAAW;QACtB,MAAM,EAAE,EAAE;QACV,QAAQ,EAAE,GAAG;KACd;IACD,QAAQ,EAAE;QACR,SAAS,EAAE,EAAE;KACd;CACF,CAAC,CAAA;AAEF,MAAM,oBAAoB,GAAG,QAAQ,CAAC,UAAU,EAC9C,WAAW,EACX,OAAO,EACP,KAAK,EACL,QAAQ,EACR,OAAO,GAOR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,EACJ,OAAO,EACP,UAAU,EACV,aAAa,EACb,kBAAkB,EAClB,eAAe,EACf,KAAK,GACN,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAE7C,MAAM,EAAE,GAAG,oBAAoB,CAAC,eAAe,CAAC,CAAA;IAChD,MAAM,IAAI,GAAG,GAAG,OAAO,6DAA6D,EAAE,EAAE,CAAA;IACxF,MAAM,KAAK,GAAG,GAAG,OAAO,6DAA6D,QAAQ,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAA;IAEvG,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,QAAQ;YACR,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAE9C,oBAAC,kBAAkB,IACjB,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,OAAO,EAChB,UAAU,EAAE,UAAU,EACtB,kBAAkB,EAAE,kBAAkB,EACtC,kBAAkB,EAAE,aAAa,EACjC,eAAe,EAAE,eAAe,GAChC;YAED,eAAe,CAAC,CAAC,CAAC,CACjB,6BAAK,SAAS,EAAE,OAAO,CAAC,QAAQ;;gBACV,oBAAC,YAAY,IAAC,IAAI,EAAE,IAAI,IAAG,KAAK,CAAgB,CAChE,CACP,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,QAAQ,2UAM1B,CACC;QAEhB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,YAGM,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,oBAAoB,CAAA"}
+{"version":3,"file":"NCBIBlastManualPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAA;AAC7C,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACjE,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,YAAY,MAAM,kCAAkC,CAAA;AAC3D,OAAO,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AACtE,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AAIlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,QAAQ,EAAE;QACR,SAAS,EAAE,WAAW;QACtB,MAAM,EAAE,EAAE;QACV,QAAQ,EAAE,GAAG;KACd;IACD,QAAQ,EAAE;QACR,SAAS,EAAE,EAAE;KACd;CACF,CAAC,CAAA;AAEF,MAAM,oBAAoB,GAAG,QAAQ,CAAC,UAAU,EAC9C,WAAW,EACX,OAAO,EACP,KAAK,EACL,QAAQ,EACR,OAAO,GAOR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,mBAAmB,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,mBAAmB,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IACrE,MAAM,EAAE,eAAe,EAAE,KAAK,EAAE,GAAG,mBAAmB,CAAA;IAEtD,MAAM,EAAE,GAAG,oBAAoB,CAAC,eAAe,CAAC,CAAA;IAChD,MAAM,IAAI,GAAG,GAAG,OAAO,6DAA6D,EAAE,EAAE,CAAA;IACxF,MAAM,KAAK,GAAG,GAAG,OAAO,6DAA6D,QAAQ,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAA;IAEvG,OAAO,CACL;QACE,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK;YAC7B,QAAQ;YAET,oBAAC,kBAAkB,IAAC,OAAO,EAAE,OAAO,KAAM,mBAAmB,GAAI;YAEhE,eAAe,CAAC,CAAC,CAAC,CACjB,6BAAK,SAAS,EAAE,OAAO,CAAC,QAAQ;;gBACV,oBAAC,YAAY,IAAC,IAAI,EAAE,IAAI,IAAG,KAAK,CAAgB,CAChE,CACP,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,QAAQ,2UAM1B,CACM;QAErB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,YAGM,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,oBAAoB,CAAA"}

package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastMethodSelector.d.ts

@@ -1,5 +1,6 @@
 import React from 'react';
+import type { BlastLookupMethod } from './NCBIBlastPanel';
 export default function NCBIBlastMethodSelector({ lookupMethod, setLookupMethod, }: {
-    lookupMethod: string;
-    setLookupMethod: (method: string) => void;
+    lookupMethod: BlastLookupMethod;
+    setLookupMethod: (method: BlastLookupMethod) => void;
 }): React.JSX.Element;

package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastMethodSelector.js.map

@@ -1 +1 @@
-{"version":3,"file":"NCBIBlastMethodSelector.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastMethodSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,WAAW,EAAE,gBAAgB,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAEhF,MAAM,CAAC,OAAO,UAAU,uBAAuB,CAAC,EAC9C,YAAY,EACZ,eAAe,GAIhB;IACC,OAAO,CACL,oBAAC,WAAW,IAAC,SAAS,EAAC,UAAU;QAC/B,oBAAC,UAAU,IACT,GAAG,QACH,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,eAAe,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YACrC,CAAC;YAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,WAAW,GACjB;YACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,KAAK,EACX,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,eAAe,GACrB;YACF,oBAAC,gBAAgB,IAAC,KAAK,EAAC,QAAQ,EAAC,OAAO,EAAE,oBAAC,KAAK,OAAG,EAAE,KAAK,EAAC,QAAQ,GAAG,CAC3D,CACD,CACf,CAAA;AACH,CAAC"}
+{"version":3,"file":"NCBIBlastMethodSelector.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastMethodSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,WAAW,EAAE,gBAAgB,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAIhF,MAAM,CAAC,OAAO,UAAU,uBAAuB,CAAC,EAC9C,YAAY,EACZ,eAAe,GAIhB;IACC,OAAO,CACL,oBAAC,WAAW,IAAC,SAAS,EAAC,UAAU;QAC/B,oBAAC,UAAU,IACT,GAAG,QACH,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,eAAe,CAAC,KAAK,CAAC,MAAM,CAAC,KAA0B,CAAC,CAAA;YAC1D,CAAC;YAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,WAAW,GACjB;YACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,KAAK,EACX,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,eAAe,GACrB;YACF,oBAAC,gBAAgB,IAAC,KAAK,EAAC,QAAQ,EAAC,OAAO,EAAE,oBAAC,KAAK,OAAG,EAAE,KAAK,EAAC,QAAQ,GAAG,CAC3D,CACD,CACf,CAAA;AACH,CAAC"}

package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.d.ts

@@ -1,7 +1,32 @@
 import React from 'react';
 import type { AbstractTrackModel, Feature } from '@jbrowse/core/util';
+declare const panelMap: {
+    readonly automatic: ({ handleClose, feature, model, children, baseUrl, }: {
+        model: AbstractTrackModel;
+        feature: Feature;
+        baseUrl: string;
+        handleClose: () => void;
+        children: React.ReactNode;
+    }) => React.JSX.Element;
+    readonly rid: ({ handleClose, feature, model, children, baseUrl, }: {
+        model: AbstractTrackModel;
+        feature: Feature;
+        baseUrl: string;
+        handleClose: () => void;
+        children: React.ReactNode;
+    }) => React.JSX.Element;
+    readonly manual: ({ handleClose, feature, model, children, baseUrl, }: {
+        children: React.ReactNode;
+        model: AbstractTrackModel;
+        feature: Feature;
+        baseUrl: string;
+        handleClose: () => void;
+    }) => React.JSX.Element;
+};
+export type BlastLookupMethod = keyof typeof panelMap;
 export default function NCBIBlastPanel({ handleClose, model, feature, }: {
     handleClose: () => void;
     model: AbstractTrackModel;
     feature: Feature;
 }): React.JSX.Element;
+export {};

package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.js.map

@@ -1 +1 @@
-{"version":3,"file":"NCBIBlastPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAA;AACpD,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAC/D,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAC/D,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AACnD,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,UAAU,CAAA;AAIzC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,cAAc,EAAE;QACd,KAAK,EAAE,OAAO;KACf;CACF,CAAC,CAAA;AAEF,MAAM,QAAQ,GAAG;IACf,SAAS,EAAE,uBAAuB;IAClC,GAAG,EAAE,iBAAiB;IACtB,MAAM,EAAE,oBAAoB;CACpB,CAAA;AAEV,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,EACrC,WAAW,EACX,KAAK,EACL,OAAO,GAKR;IACC,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,WAAW,CAAC,CAAA;IAC7D,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,eAAe,CAC3C,kBAAkB,EAClB,cAAc,CACf,CAAA;IACD,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,MAAM,KAAK,GAAG,QAAQ,CAAC,YAAqC,CAAC,CAAA;IAE7D,OAAO,CACL;QACE,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,cAAc,EACjC,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,GAAG,EAAE;gBACZ,eAAe,CAAC,IAAI,CAAC,CAAA;YACvB,CAAC;YAED,oBAAC,YAAY,OAAG,CACL;QAEb,oBAAC,KAAK,IACJ,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,OAAO;YAEhB,oBAAC,uBAAuB,IACtB,YAAY,EAAE,YAAY,EAC1B,eAAe,EAAE,eAAe,GAChC,CACI;QAEP,YAAY,CAAC,CAAC,CAAC,CACd,oBAAC,kBAAkB,IACjB,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,MAAM,CAAC,EAAE;gBACpB,IAAI,MAAM,EAAE,CAAC;oBACX,UAAU,CAAC,MAAM,CAAC,CAAA;gBACpB,CAAC;gBACD,eAAe,CAAC,KAAK,CAAC,CAAA;YACxB,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC"}
+{"version":3,"file":"NCBIBlastPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAA;AACpD,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAC/D,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAC/D,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AACnD,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,UAAU,CAAA;AAIzC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,cAAc,EAAE;QACd,KAAK,EAAE,OAAO;KACf;CACF,CAAC,CAAA;AAEF,MAAM,QAAQ,GAAG;IACf,SAAS,EAAE,uBAAuB;IAClC,GAAG,EAAE,iBAAiB;IACtB,MAAM,EAAE,oBAAoB;CACpB,CAAA;AAIV,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,EACrC,WAAW,EACX,KAAK,EACL,OAAO,GAKR;IACC,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GACnC,QAAQ,CAAoB,WAAW,CAAC,CAAA;IAC1C,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,eAAe,CAC3C,kBAAkB,EAClB,cAAc,CACf,CAAA;IACD,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,MAAM,KAAK,GAAG,QAAQ,CAAC,YAAY,CAAC,CAAA;IAEpC,OAAO,CACL;QACE,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,cAAc,EACjC,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,GAAG,EAAE;gBACZ,eAAe,CAAC,IAAI,CAAC,CAAA;YACvB,CAAC;YAED,oBAAC,YAAY,OAAG,CACL;QAEb,oBAAC,KAAK,IACJ,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,OAAO;YAEhB,oBAAC,uBAAuB,IACtB,YAAY,EAAE,YAAY,EAC1B,eAAe,EAAE,eAAe,GAChC,CACI;QAEP,YAAY,CAAC,CAAC,CAAC,CACd,oBAAC,kBAAkB,IACjB,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,MAAM,CAAC,EAAE;gBACpB,IAAI,MAAM,EAAE,CAAC;oBACX,UAAU,CAAC,MAAM,CAAC,CAAA;gBACpB,CAAC;gBACD,eAAe,CAAC,KAAK,CAAC,CAAA;YACxB,CAAC,GACD,CACH,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC"}