jbrowse-plugin-msaview 2.3.5 → 2.3.8

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Files changed (62) hide show
  1. package/README.md +15 -216
  2. package/dist/AddHighlightModel/GenomeMouseoverHighlight.js.map +1 -1
  3. package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js +19 -4
  4. package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js.map +1 -1
  5. package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js +16 -7
  6. package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js.map +1 -1
  7. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js +4 -2
  8. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js.map +1 -1
  9. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.js +4 -1
  10. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.js.map +1 -1
  11. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.js +8 -1
  12. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.js.map +1 -1
  13. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.js +15 -7
  14. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.js.map +1 -1
  15. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBISettingsDialog.js +8 -1
  16. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBISettingsDialog.js.map +1 -1
  17. package/dist/LaunchMsaView/components/NCBIBlastQuery/useCachedBlastResults.js +3 -0
  18. package/dist/LaunchMsaView/components/NCBIBlastQuery/useCachedBlastResults.js.map +1 -1
  19. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js +7 -2
  20. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js.map +1 -1
  21. package/dist/LaunchMsaView/components/TabPanel.js +1 -1
  22. package/dist/LaunchMsaView/components/TabPanel.js.map +1 -1
  23. package/dist/LaunchMsaView/components/TranscriptSelector.js +7 -3
  24. package/dist/LaunchMsaView/components/TranscriptSelector.js.map +1 -1
  25. package/dist/MsaViewPanel/afterCreateAutoruns.js +9 -15
  26. package/dist/MsaViewPanel/afterCreateAutoruns.js.map +1 -1
  27. package/dist/MsaViewPanel/components/ConnectStructureDialog.js +15 -10
  28. package/dist/MsaViewPanel/components/ConnectStructureDialog.js.map +1 -1
  29. package/dist/MsaViewPanel/components/MsaViewPanel.js +8 -1
  30. package/dist/MsaViewPanel/components/MsaViewPanel.js.map +1 -1
  31. package/dist/MsaViewPanel/model.d.ts +2 -2
  32. package/dist/MsaViewPanel/model.js +13 -10
  33. package/dist/MsaViewPanel/model.js.map +1 -1
  34. package/dist/MsaViewPanel/pairwiseAlignment.js +6 -6
  35. package/dist/MsaViewPanel/pairwiseAlignment.js.map +1 -1
  36. package/dist/MsaViewPanel/structureConnection.d.ts +22 -0
  37. package/dist/MsaViewPanel/structureConnection.js +4 -0
  38. package/dist/MsaViewPanel/structureConnection.js.map +1 -1
  39. package/dist/jbrowse-plugin-msaview.umd.production.min.js +24 -24
  40. package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +4 -4
  41. package/dist/version.d.ts +1 -1
  42. package/dist/version.js +1 -1
  43. package/package.json +2 -4
  44. package/src/AddHighlightModel/GenomeMouseoverHighlight.tsx +1 -2
  45. package/src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx +22 -7
  46. package/src/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.tsx +17 -9
  47. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.tsx +8 -3
  48. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.tsx +4 -1
  49. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.tsx +9 -1
  50. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.tsx +15 -8
  51. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBISettingsDialog.tsx +9 -1
  52. package/src/LaunchMsaView/components/NCBIBlastQuery/useCachedBlastResults.ts +3 -0
  53. package/src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx +11 -2
  54. package/src/LaunchMsaView/components/TabPanel.tsx +1 -1
  55. package/src/LaunchMsaView/components/TranscriptSelector.tsx +7 -3
  56. package/src/MsaViewPanel/afterCreateAutoruns.ts +9 -27
  57. package/src/MsaViewPanel/components/ConnectStructureDialog.tsx +23 -25
  58. package/src/MsaViewPanel/components/MsaViewPanel.tsx +9 -1
  59. package/src/MsaViewPanel/model.ts +23 -18
  60. package/src/MsaViewPanel/pairwiseAlignment.ts +6 -6
  61. package/src/MsaViewPanel/structureConnection.ts +23 -0
  62. package/src/version.ts +1 -1
package/dist/MsaViewPanel/structureConnection.js CHANGED
@@ -1,3 +1,7 @@
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+ export function isProteinView(view) {
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+ const v = view;
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+ return v.type === 'ProteinView' && Array.isArray(v.structures);
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+ }
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  /**
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  * Helper to convert gapped MSA column to ungapped position for a specific row
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  */
package/dist/MsaViewPanel/structureConnection.js.map CHANGED
@@ -1 +1 @@
1
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