jbrowse-plugin-msaview 2.3.3 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (76) hide show
  1. package/README.md +15 -216
  2. package/dist/AddHighlightModel/GenomeMouseoverHighlight.js.map +1 -1
  3. package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.js +2 -11
  4. package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.js.map +1 -1
  5. package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js +19 -4
  6. package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js.map +1 -1
  7. package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js +39 -53
  8. package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js.map +1 -1
  9. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js +9 -22
  10. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js.map +1 -1
  11. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.js +4 -1
  12. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.js.map +1 -1
  13. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.js +8 -1
  14. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.js.map +1 -1
  15. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.js +15 -7
  16. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.js.map +1 -1
  17. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBISettingsDialog.js +8 -1
  18. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBISettingsDialog.js.map +1 -1
  19. package/dist/LaunchMsaView/components/NCBIBlastQuery/useCachedBlastResults.d.ts +7 -0
  20. package/dist/LaunchMsaView/components/NCBIBlastQuery/useCachedBlastResults.js +32 -0
  21. package/dist/LaunchMsaView/components/NCBIBlastQuery/useCachedBlastResults.js.map +1 -0
  22. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js +7 -2
  23. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js.map +1 -1
  24. package/dist/LaunchMsaView/components/TabPanel.js +1 -1
  25. package/dist/LaunchMsaView/components/TabPanel.js.map +1 -1
  26. package/dist/LaunchMsaView/components/TranscriptSelector.js +7 -3
  27. package/dist/LaunchMsaView/components/TranscriptSelector.js.map +1 -1
  28. package/dist/LaunchMsaView/components/useTranscriptSelection.js +15 -14
  29. package/dist/LaunchMsaView/components/useTranscriptSelection.js.map +1 -1
  30. package/dist/MsaViewPanel/afterCreateAutoruns.js +17 -18
  31. package/dist/MsaViewPanel/afterCreateAutoruns.js.map +1 -1
  32. package/dist/MsaViewPanel/components/ConnectStructureDialog.js +15 -10
  33. package/dist/MsaViewPanel/components/ConnectStructureDialog.js.map +1 -1
  34. package/dist/MsaViewPanel/components/ErrorBoundary.d.ts +19 -0
  35. package/dist/MsaViewPanel/components/ErrorBoundary.js +22 -0
  36. package/dist/MsaViewPanel/components/ErrorBoundary.js.map +1 -0
  37. package/dist/MsaViewPanel/components/MsaViewPanel.js +11 -2
  38. package/dist/MsaViewPanel/components/MsaViewPanel.js.map +1 -1
  39. package/dist/MsaViewPanel/model.d.ts +2 -14
  40. package/dist/MsaViewPanel/model.js +13 -10
  41. package/dist/MsaViewPanel/model.js.map +1 -1
  42. package/dist/MsaViewPanel/pairwiseAlignment.js +15 -10
  43. package/dist/MsaViewPanel/pairwiseAlignment.js.map +1 -1
  44. package/dist/MsaViewPanel/structureConnection.d.ts +22 -0
  45. package/dist/MsaViewPanel/structureConnection.js +4 -0
  46. package/dist/MsaViewPanel/structureConnection.js.map +1 -1
  47. package/dist/jbrowse-plugin-msaview.umd.production.min.js +26 -26
  48. package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +4 -4
  49. package/dist/utils/blastCache.js +2 -3
  50. package/dist/utils/blastCache.js.map +1 -1
  51. package/dist/version.d.ts +1 -1
  52. package/dist/version.js +1 -1
  53. package/package.json +33 -35
  54. package/src/AddHighlightModel/GenomeMouseoverHighlight.tsx +1 -2
  55. package/src/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.ts +2 -11
  56. package/src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx +22 -7
  57. package/src/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.tsx +40 -58
  58. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.tsx +14 -23
  59. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.tsx +4 -1
  60. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.tsx +9 -1
  61. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.tsx +15 -8
  62. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBISettingsDialog.tsx +9 -1
  63. package/src/LaunchMsaView/components/NCBIBlastQuery/useCachedBlastResults.ts +52 -0
  64. package/src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx +11 -2
  65. package/src/LaunchMsaView/components/TabPanel.tsx +1 -1
  66. package/src/LaunchMsaView/components/TranscriptSelector.tsx +7 -3
  67. package/src/LaunchMsaView/components/useTranscriptSelection.ts +25 -17
  68. package/src/MsaViewPanel/afterCreateAutoruns.ts +17 -18
  69. package/src/MsaViewPanel/components/ConnectStructureDialog.tsx +23 -25
  70. package/src/MsaViewPanel/components/ErrorBoundary.tsx +40 -0
  71. package/src/MsaViewPanel/components/MsaViewPanel.tsx +22 -11
  72. package/src/MsaViewPanel/model.ts +49 -33
  73. package/src/MsaViewPanel/pairwiseAlignment.ts +15 -10
  74. package/src/MsaViewPanel/structureConnection.ts +23 -0
  75. package/src/utils/blastCache.ts +2 -3
  76. package/src/version.ts +1 -1

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