jbrowse-plugin-msaview 2.2.1 → 2.2.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (131) hide show
  1. package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.d.ts +10 -0
  2. package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.js +64 -0
  3. package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.js.map +1 -0
  4. package/dist/BgzipFastaMsaAdapter/configSchema.d.ts +7 -0
  5. package/dist/BgzipFastaMsaAdapter/configSchema.js +13 -0
  6. package/dist/BgzipFastaMsaAdapter/configSchema.js.map +1 -0
  7. package/dist/BgzipFastaMsaAdapter/index.d.ts +2 -0
  8. package/dist/BgzipFastaMsaAdapter/index.js +15 -0
  9. package/dist/BgzipFastaMsaAdapter/index.js.map +1 -0
  10. package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.js.map +1 -1
  11. package/dist/LaunchMsaView/components/EnsemblGeneTree/useGeneTree.d.ts +1 -1
  12. package/dist/LaunchMsaView/components/EnsemblGeneTree/useGeneTree.js +3 -23
  13. package/dist/LaunchMsaView/components/EnsemblGeneTree/useGeneTree.js.map +1 -1
  14. package/dist/LaunchMsaView/components/EnsemblGeneTree/util.d.ts +1 -4
  15. package/dist/LaunchMsaView/components/EnsemblGeneTree/util.js +1 -37
  16. package/dist/LaunchMsaView/components/EnsemblGeneTree/util.js.map +1 -1
  17. package/dist/LaunchMsaView/components/LaunchMsaViewDialog.d.ts +1 -1
  18. package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js +21 -16
  19. package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js.map +1 -1
  20. package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js +1 -1
  21. package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js.map +1 -1
  22. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js +12 -8
  23. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js.map +1 -1
  24. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.js +1 -1
  25. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.js.map +1 -1
  26. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.js +8 -7
  27. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.js.map +1 -1
  28. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBISettingsDialog.js +1 -1
  29. package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBISettingsDialog.js.map +1 -1
  30. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js +87 -63
  31. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js.map +1 -1
  32. package/dist/LaunchMsaView/components/PreLoadedMSA/consts.d.ts +7 -0
  33. package/dist/LaunchMsaView/components/PreLoadedMSA/consts.js +8 -0
  34. package/dist/LaunchMsaView/components/PreLoadedMSA/consts.js.map +1 -0
  35. package/dist/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.d.ts +12 -0
  36. package/dist/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.js +12 -0
  37. package/dist/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.js.map +1 -0
  38. package/dist/LaunchMsaView/components/PreLoadedMSA/findValidTranscriptId.d.ts +5 -0
  39. package/dist/LaunchMsaView/components/PreLoadedMSA/findValidTranscriptId.js +16 -0
  40. package/dist/LaunchMsaView/components/PreLoadedMSA/findValidTranscriptId.js.map +1 -0
  41. package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.d.ts +6 -3
  42. package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.js +3 -20
  43. package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.js.map +1 -1
  44. package/dist/LaunchMsaView/components/PreLoadedMSA/types.d.ts +7 -0
  45. package/dist/LaunchMsaView/components/PreLoadedMSA/types.js +2 -0
  46. package/dist/LaunchMsaView/components/PreLoadedMSA/types.js.map +1 -0
  47. package/dist/LaunchMsaView/components/TranscriptSelector.js +2 -2
  48. package/dist/LaunchMsaView/components/TranscriptSelector.js.map +1 -1
  49. package/dist/LaunchMsaView/components/calculateProteinSequence.d.ts +2 -2
  50. package/dist/LaunchMsaView/components/calculateProteinSequence.js +2 -2
  51. package/dist/LaunchMsaView/components/calculateProteinSequence.js.map +1 -1
  52. package/dist/LaunchMsaView/components/types.d.ts +1 -0
  53. package/dist/LaunchMsaView/components/useFeatureSequence.d.ts +3 -7
  54. package/dist/LaunchMsaView/components/useFeatureSequence.js +9 -62
  55. package/dist/LaunchMsaView/components/useFeatureSequence.js.map +1 -1
  56. package/dist/LaunchMsaView/components/useSWRFeatureSequence.d.ts +13 -0
  57. package/dist/LaunchMsaView/components/useSWRFeatureSequence.js +53 -0
  58. package/dist/LaunchMsaView/components/useSWRFeatureSequence.js.map +1 -0
  59. package/dist/LaunchMsaView/index.js +3 -1
  60. package/dist/LaunchMsaView/index.js.map +1 -1
  61. package/dist/MsaViewPanel/components/RIDLink.js +1 -1
  62. package/dist/MsaViewPanel/components/RIDLink.js.map +1 -1
  63. package/dist/MsaViewPanel/genomeToMSA.js +2 -2
  64. package/dist/MsaViewPanel/genomeToMSA.js.map +1 -1
  65. package/dist/MsaViewPanel/model.d.ts +13 -84
  66. package/dist/MsaViewPanel/model.js +6 -2
  67. package/dist/MsaViewPanel/model.js.map +1 -1
  68. package/dist/MsaViewPanel/msaCoordToGenomeCoord.js +39 -14
  69. package/dist/MsaViewPanel/msaCoordToGenomeCoord.js.map +1 -1
  70. package/dist/MsaViewPanel/util.js +2 -2
  71. package/dist/MsaViewPanel/util.js.map +1 -1
  72. package/dist/components/ExternalLink.js.map +1 -0
  73. package/dist/components/ReadOnlyTextField2.js.map +1 -0
  74. package/dist/components/TextField2.js.map +1 -0
  75. package/dist/index.d.ts +19 -0
  76. package/dist/index.js +26 -0
  77. package/dist/index.js.map +1 -1
  78. package/dist/jbrowse-plugin-msaview.umd.production.min.js +46 -33
  79. package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +4 -4
  80. package/dist/out.js +55367 -0
  81. package/dist/utils/fetch.d.ts +3 -1
  82. package/dist/utils/fetch.js +24 -3
  83. package/dist/utils/fetch.js.map +1 -1
  84. package/package.json +7 -6
  85. package/src/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.ts +78 -0
  86. package/src/BgzipFastaMsaAdapter/configSchema.ts +18 -0
  87. package/src/BgzipFastaMsaAdapter/index.ts +18 -0
  88. package/src/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.tsx +0 -1
  89. package/src/LaunchMsaView/components/EnsemblGeneTree/useGeneTree.ts +6 -24
  90. package/src/LaunchMsaView/components/EnsemblGeneTree/util.ts +6 -45
  91. package/src/LaunchMsaView/components/LaunchMsaViewDialog.tsx +23 -24
  92. package/src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx +1 -1
  93. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.tsx +13 -8
  94. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastManualPanel.tsx +1 -1
  95. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastPanel.tsx +20 -29
  96. package/src/LaunchMsaView/components/NCBIBlastQuery/NCBISettingsDialog.tsx +1 -1
  97. package/src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx +154 -68
  98. package/src/LaunchMsaView/components/PreLoadedMSA/consts.ts +7 -0
  99. package/src/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.ts +33 -0
  100. package/src/LaunchMsaView/components/PreLoadedMSA/findValidTranscriptId.ts +25 -0
  101. package/src/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.ts +7 -26
  102. package/src/LaunchMsaView/components/PreLoadedMSA/types.ts +8 -0
  103. package/src/LaunchMsaView/components/TranscriptSelector.tsx +2 -2
  104. package/src/LaunchMsaView/components/calculateProteinSequence.ts +3 -3
  105. package/src/LaunchMsaView/components/types.ts +1 -0
  106. package/src/LaunchMsaView/components/useFeatureSequence.ts +10 -71
  107. package/src/LaunchMsaView/components/useSWRFeatureSequence.ts +90 -0
  108. package/src/LaunchMsaView/index.ts +4 -1
  109. package/src/MsaViewPanel/components/RIDLink.tsx +1 -1
  110. package/src/MsaViewPanel/genomeToMSA.ts +2 -2
  111. package/src/MsaViewPanel/model.ts +6 -2
  112. package/src/MsaViewPanel/msaCoordToGenomeCoord.ts +43 -16
  113. package/src/MsaViewPanel/util.ts +2 -2
  114. package/src/index.ts +31 -0
  115. package/src/utils/fetch.ts +31 -3
  116. package/dist/ExternalLink.js.map +0 -1
  117. package/dist/LaunchMsaView/components/PreLoadedMSA/fetchGeneList.d.ts +0 -1
  118. package/dist/LaunchMsaView/components/PreLoadedMSA/fetchGeneList.js +0 -12
  119. package/dist/LaunchMsaView/components/PreLoadedMSA/fetchGeneList.js.map +0 -1
  120. package/dist/ReadOnlyTextField2.js.map +0 -1
  121. package/dist/TextField2.js.map +0 -1
  122. package/src/LaunchMsaView/components/PreLoadedMSA/fetchGeneList.ts +0 -13
  123. /package/dist/{ExternalLink.d.ts → components/ExternalLink.d.ts} +0 -0
  124. /package/dist/{ExternalLink.js → components/ExternalLink.js} +0 -0
  125. /package/dist/{ReadOnlyTextField2.d.ts → components/ReadOnlyTextField2.d.ts} +0 -0
  126. /package/dist/{ReadOnlyTextField2.js → components/ReadOnlyTextField2.js} +0 -0
  127. /package/dist/{TextField2.d.ts → components/TextField2.d.ts} +0 -0
  128. /package/dist/{TextField2.js → components/TextField2.js} +0 -0
  129. /package/src/{ExternalLink.tsx → components/ExternalLink.tsx} +0 -0
  130. /package/src/{ReadOnlyTextField2.tsx → components/ReadOnlyTextField2.tsx} +0 -0
  131. /package/src/{TextField2.tsx → components/TextField2.tsx} +0 -0

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