jbrowse-plugin-msaview 2.0.6 → 2.2.0

package/dist/index.js

@@ -1,6 +1,8 @@
 import Plugin from '@jbrowse/core/Plugin';
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
 import { isAbstractMenuManager } from '@jbrowse/core/util';
 import GridOn from '@mui/icons-material/GridOn';
+import { types } from 'mobx-state-tree';
 import { version } from '../package.json';
 import AddHighlightModelF from './AddHighlightModel';
 import LaunchMsaViewF from './LaunchMsaView';
@@ -10,6 +12,21 @@ export default class MsaViewPlugin extends Plugin {
         super(...arguments);
         this.name = 'MsaViewPlugin';
         this.version = version;
+        this.rootConfigurationSchema = {
+            msa: ConfigurationSchema('MSA', {
+                datasets: types.maybe(types.array(ConfigurationSchema('MSAEntry', {
+                    name: {
+                        type: 'string',
+                        defaultValue: '',
+                    },
+                    adapter: {
+                        type: 'frozen',
+                        description: 'This can be a data adapter config for a IndexedFasta for example, which has a special way of being interpreted',
+                        defaultValue: {},
+                    },
+                }))),
+            }),
+        };
     }
     install(pluginManager) {
         MsaViewF(pluginManager);

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAEzC,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,EAAwB,qBAAqB,EAAE,MAAM,oBAAoB,CAAA;AAChF,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AACzC,OAAO,kBAAkB,MAAM,qBAAqB,CAAA;AACpD,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAC5C,OAAO,QAAQ,MAAM,gBAAgB,CAAA;AAErC,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,MAAM;IAAjD;;QACE,SAAI,GAAG,eAAe,CAAA;QACtB,YAAO,GAAG,OAAO,CAAA;QAoBjB,4BAAuB,GAAG;YACxB,GAAG,EAAE,mBAAmB,CAAC,KAAK,EAAE;gBAC9B,QAAQ,EAAE,KAAK,CAAC,KAAK,CACnB,KAAK,CAAC,KAAK,CACT,mBAAmB,CAAC,UAAU,EAAE;oBAC9B,IAAI,EAAE;wBACJ,IAAI,EAAE,QAAQ;wBACd,YAAY,EAAE,EAAE;qBACjB;oBACD,OAAO,EAAE;wBACP,IAAI,EAAE,QAAQ;wBACd,WAAW,EACT,gHAAgH;wBAClH,YAAY,EAAE,EAAE;qBACjB;iBACF,CAAC,CACH,CACF;aACF,CAAC;SACH,CAAA;IACH,CAAC;IAtCC,OAAO,CAAC,aAA4B;QAClC,QAAQ,CAAC,aAAa,CAAC,CAAA;QACvB,cAAc,CAAC,aAAa,CAAC,CAAA;QAC7B,kBAAkB,CAAC,aAAa,CAAC,CAAA;IACnC,CAAC;IAED,SAAS,CAAC,aAA4B;QACpC,IAAI,qBAAqB,CAAC,aAAa,CAAC,SAAS,CAAC,EAAE,CAAC;YACnD,aAAa,CAAC,SAAS,CAAC,eAAe,CAAC,CAAC,KAAK,CAAC,EAAE;gBAC/C,KAAK,EAAE,kCAAkC;gBACzC,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE,CAAC,OAA6B,EAAE,EAAE;oBACzC,OAAO,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAA;gBAChC,CAAC;aACF,CAAC,CAAA;QACJ,CAAC;IACH,CAAC;CAsBF"}