jbrowse-plugin-msaview 1.0.14 → 1.0.18
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +16 -0
- package/README.md +7 -4
- package/dist/jbrowse-plugin-msaview.cjs.development.js +11 -6
- package/dist/jbrowse-plugin-msaview.cjs.development.js.map +1 -1
- package/dist/jbrowse-plugin-msaview.cjs.production.min.js +1 -1
- package/dist/jbrowse-plugin-msaview.cjs.production.min.js.map +1 -1
- package/dist/jbrowse-plugin-msaview.esm.js +9 -3
- package/dist/jbrowse-plugin-msaview.esm.js.map +1 -1
- package/dist/jbrowse-plugin-msaview.umd.development.js +7059 -5440
- package/dist/jbrowse-plugin-msaview.umd.development.js.map +1 -1
- package/dist/jbrowse-plugin-msaview.umd.production.min.js +1 -1
- package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +1 -1
- package/package.json +2 -3
- package/src/index.ts +5 -4
package/CHANGELOG.md
CHANGED
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# v1.0.18
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- Fix clicking on node labels
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# v1.0.17
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- Avoid Link redirection at react-msaview importform
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# v1.0.16
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- Update to latest react-msaview
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# v1.0.15
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- Change to add to 'Add' top level menu
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# v1.0.14
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- Fix session link loading from distconfig.json
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package/README.md
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# jbrowse-plugin-msaview
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This plugin packages https://github.com/gmod/react-msaview for usage inside of JBrowse 2
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See the docs for the react-msaview for more info https://github.com/GMOD/react-msaview/blob/main/docs/user_guide.md
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## Gallery
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MSAView plugin running in v1.5.0 of JBrowse web
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## Demo
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https://s3.amazonaws.com/jbrowse.org/code/jb2/
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https://s3.amazonaws.com/jbrowse.org/code/jb2/main/index.html?config=https://unpkg.com/jbrowse-plugin-msaview/dist/config.json&session=share-BVmmEYAoAv&password=SuQaN
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## Features
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@@ -6,7 +6,7 @@ function _interopDefault (ex) { return (ex && (typeof ex === 'object') && 'defau
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var Plugin = _interopDefault(require('@jbrowse/core/Plugin'));
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var util = require('@jbrowse/core/util');
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var
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var MSA = require('react-msaview');
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var ViewType = _interopDefault(require('@jbrowse/core/pluggableElementTypes/ViewType'));
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var GridOn = _interopDefault(require('@material-ui/icons/GridOn'));
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try {
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Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {}));
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return true;
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} catch (e) {
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return false;
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function _possibleConstructorReturn(self, call) {
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if (call && (typeof call === "object" || typeof call === "function")) {
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return call;
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} else if (call !== void 0) {
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throw new TypeError("Derived constructors may only return object or undefined");
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}
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return _assertThisInitialized(self);
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};
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}
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var version = "1.0.
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var version = "1.0.18";
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var MsaViewPlugin = /*#__PURE__*/function (_Plugin) {
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_inherits(MsaViewPlugin, _Plugin);
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_createClass(MsaViewPlugin, [{
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key: "install",
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value: function install(pluginManager) {
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console.log({
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MSA: MSA
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});
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pluginManager.addViewType(function () {
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return new ViewType({
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name: 'MsaView',
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//@ts-ignore
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stateModel:
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ReactComponent:
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stateModel: MSA.MSAModel,
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ReactComponent: MSA.MSAView
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});
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});
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}
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key: "configure",
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value: function configure(pluginManager) {
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if (util.isAbstractMenuManager(pluginManager.rootModel)) {
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pluginManager.rootModel.appendToSubMenu(['
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pluginManager.rootModel.appendToSubMenu(['Add'], {
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label: 'Multiple sequence alignment view',
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icon: GridOn,
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onClick: function onClick(session) {
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{"version":3,"file":"jbrowse-plugin-msaview.cjs.development.js","sources":["../src/index.ts"],"sourcesContent":["import Plugin from '@jbrowse/core/Plugin'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { version } from '../package.json'\nimport { AbstractSessionModel, isAbstractMenuManager } from '@jbrowse/core/util'\nimport
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{"version":3,"file":"jbrowse-plugin-msaview.cjs.development.js","sources":["../src/index.ts"],"sourcesContent":["import Plugin from '@jbrowse/core/Plugin'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { version } from '../package.json'\nimport { AbstractSessionModel, isAbstractMenuManager } from '@jbrowse/core/util'\nimport * as MSA from 'react-msaview'\nimport ViewType from '@jbrowse/core/pluggableElementTypes/ViewType'\nimport GridOn from '@material-ui/icons/GridOn'\n\nexport default class MsaViewPlugin extends Plugin {\n name = 'MsaViewPlugin'\n version = version\n\n install(pluginManager: PluginManager) {\n console.log({ MSA })\n pluginManager.addViewType(\n () =>\n new ViewType({\n name: 'MsaView',\n //@ts-ignore\n stateModel: MSA.MSAModel,\n ReactComponent: MSA.MSAView,\n }),\n )\n }\n\n configure(pluginManager: PluginManager) {\n if (isAbstractMenuManager(pluginManager.rootModel)) {\n pluginManager.rootModel.appendToSubMenu(['Add'], {\n label: 'Multiple sequence alignment view',\n icon: GridOn,\n onClick: (session: AbstractSessionModel) => {\n session.addView('MsaView', {})\n },\n })\n }\n }\n}\n"],"names":["MsaViewPlugin","version","pluginManager","console","log","MSA","addViewType","ViewType","name","stateModel","ReactComponent","isAbstractMenuManager","rootModel","appendToSubMenu","label","icon","GridOn","onClick","session","addView","Plugin"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;IAQqBA;;;;;AAArB;;;;;;AACE,cAAA,GAAO,eAAP;AACA,iBAAA,GAAUC,OAAV;;AA0BD;;;;WAxBC,iBAAQC,aAAR;AACEC,MAAAA,OAAO,CAACC,GAAR,CAAY;AAAEC,QAAAA,GAAG,EAAHA;AAAF,OAAZ;AACAH,MAAAA,aAAa,CAACI,WAAd,CACE;AAAA,eACE,IAAIC,QAAJ,CAAa;AACXC,UAAAA,IAAI,EAAE,SADK;AAEX;AACAC,UAAAA,UAAU,EAAEJ,YAHD;AAIXK,UAAAA,cAAc,EAAEL;AAJL,SAAb,CADF;AAAA,OADF;AASD;;;WAED,mBAAUH,aAAV;AACE,UAAIS,0BAAqB,CAACT,aAAa,CAACU,SAAf,CAAzB,EAAoD;AAClDV,QAAAA,aAAa,CAACU,SAAd,CAAwBC,eAAxB,CAAwC,CAAC,KAAD,CAAxC,EAAiD;AAC/CC,UAAAA,KAAK,EAAE,kCADwC;AAE/CC,UAAAA,IAAI,EAAEC,MAFyC;AAG/CC,UAAAA,OAAO,EAAE,iBAACC,OAAD;AACPA,YAAAA,OAAO,CAACC,OAAR,CAAgB,SAAhB,EAA2B,EAA3B;AACD;AAL8C,SAAjD;AAOD;AACF;;;;EA3BwCC;;;;"}
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"use strict";function e(e){return e&&"object"==typeof e&&"default"in e?e.default:e}Object.defineProperty(exports,"__esModule",{value:!0});var t=e(require("@jbrowse/core/Plugin")),n=require("@jbrowse/core/util"),r=require("react-msaview"),o=e(require("@jbrowse/core/pluggableElementTypes/ViewType")),i=e(require("@material-ui/icons/GridOn"));function u(e,t){if(!(e instanceof t))throw new TypeError("Cannot call a class as a function")}function c(e){return(c=Object.setPrototypeOf?Object.getPrototypeOf:function(e){return e.__proto__||Object.getPrototypeOf(e)})(e)}function a(e,t){return(a=Object.setPrototypeOf||function(e,t){return e.__proto__=t,e})(e,t)}function f(e,t){
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"use strict";function e(e){return e&&"object"==typeof e&&"default"in e?e.default:e}Object.defineProperty(exports,"__esModule",{value:!0});var t=e(require("@jbrowse/core/Plugin")),n=require("@jbrowse/core/util"),r=require("react-msaview"),o=e(require("@jbrowse/core/pluggableElementTypes/ViewType")),i=e(require("@material-ui/icons/GridOn"));function u(e,t){if(!(e instanceof t))throw new TypeError("Cannot call a class as a function")}function c(e){return(c=Object.setPrototypeOf?Object.getPrototypeOf:function(e){return e.__proto__||Object.getPrototypeOf(e)})(e)}function a(e,t){return(a=Object.setPrototypeOf||function(e,t){return e.__proto__=t,e})(e,t)}function f(e,t){if(t&&("object"==typeof t||"function"==typeof t))return t;if(void 0!==t)throw new TypeError("Derived constructors may only return object or undefined");return function(e){if(void 0===e)throw new ReferenceError("this hasn't been initialised - super() hasn't been called");return e}(e)}function l(e){var t=function(){if("undefined"==typeof Reflect||!Reflect.construct)return!1;if(Reflect.construct.sham)return!1;if("function"==typeof Proxy)return!0;try{return Boolean.prototype.valueOf.call(Reflect.construct(Boolean,[],(function(){}))),!0}catch(e){return!1}}();return function(){var n,r=c(e);if(t){var o=c(this).constructor;n=Reflect.construct(r,arguments,o)}else n=r.apply(this,arguments);return f(this,n)}}exports.default=function(e){!function(e,t){if("function"!=typeof t&&null!==t)throw new TypeError("Super expression must either be null or a function");e.prototype=Object.create(t&&t.prototype,{constructor:{value:e,writable:!0,configurable:!0}}),t&&a(e,t)}(s,t);var c,f=l(s);function s(){var e;return u(this,s),(e=f.apply(this,arguments)).name="MsaViewPlugin",e.version="1.0.18",e}return(c=[{key:"install",value:function(e){console.log({MSA:r}),e.addViewType((function(){return new o({name:"MsaView",stateModel:r.MSAModel,ReactComponent:r.MSAView})}))}},{key:"configure",value:function(e){n.isAbstractMenuManager(e.rootModel)&&e.rootModel.appendToSubMenu(["Add"],{label:"Multiple sequence alignment view",icon:i,onClick:function(e){e.addView("MsaView",{})}})}}])&&function(e,t){for(var n=0;n<t.length;n++){var r=t[n];r.enumerable=r.enumerable||!1,r.configurable=!0,"value"in r&&(r.writable=!0),Object.defineProperty(e,r.key,r)}}(s.prototype,c),s}();
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//# sourceMappingURL=jbrowse-plugin-msaview.cjs.production.min.js.map
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{"version":3,"file":"jbrowse-plugin-msaview.cjs.production.min.js","sources":["../src/index.ts"],"sourcesContent":["import Plugin from '@jbrowse/core/Plugin'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { version } from '../package.json'\nimport { AbstractSessionModel, isAbstractMenuManager } from '@jbrowse/core/util'\nimport
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{"version":3,"file":"jbrowse-plugin-msaview.cjs.production.min.js","sources":["../src/index.ts"],"sourcesContent":["import Plugin from '@jbrowse/core/Plugin'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { version } from '../package.json'\nimport { AbstractSessionModel, isAbstractMenuManager } from '@jbrowse/core/util'\nimport * as MSA from 'react-msaview'\nimport ViewType from '@jbrowse/core/pluggableElementTypes/ViewType'\nimport GridOn from '@material-ui/icons/GridOn'\n\nexport default class MsaViewPlugin extends Plugin {\n name = 'MsaViewPlugin'\n version = version\n\n install(pluginManager: PluginManager) {\n console.log({ MSA })\n pluginManager.addViewType(\n () =>\n new ViewType({\n name: 'MsaView',\n //@ts-ignore\n stateModel: MSA.MSAModel,\n ReactComponent: MSA.MSAView,\n }),\n )\n }\n\n configure(pluginManager: PluginManager) {\n if (isAbstractMenuManager(pluginManager.rootModel)) {\n pluginManager.rootModel.appendToSubMenu(['Add'], {\n label: 'Multiple sequence alignment view',\n icon: GridOn,\n onClick: (session: AbstractSessionModel) => {\n session.addView('MsaView', {})\n },\n })\n }\n }\n}\n"],"names":["Plugin","pluginManager","console","log","MSA","addViewType","ViewType","name","stateModel","ReactComponent","isAbstractMenuManager","rootModel","appendToSubMenu","label","icon","GridOn","onClick","session","addView"],"mappings":"qmDAQ2CA,qFAClC,oEAGP,SAAQC,GACNC,QAAQC,IAAI,CAAEC,IAAAA,IACdH,EAAcI,aACZ,kBACE,IAAIC,EAAS,CACXC,KAAM,UAENC,WAAYJ,WACZK,eAAgBL,wCAKxB,SAAUH,GACJS,wBAAsBT,EAAcU,YACtCV,EAAcU,UAAUC,gBAAgB,CAAC,OAAQ,CAC/CC,MAAO,mCACPC,KAAMC,EACNC,QAAS,SAACC,GACRA,EAAQC,QAAQ,UAAW"}
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{"version":3,"file":"jbrowse-plugin-msaview.esm.js","sources":["../src/index.ts"],"sourcesContent":["import Plugin from '@jbrowse/core/Plugin'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { version } from '../package.json'\nimport { AbstractSessionModel, isAbstractMenuManager } from '@jbrowse/core/util'\nimport
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{"version":3,"file":"jbrowse-plugin-msaview.esm.js","sources":["../src/index.ts"],"sourcesContent":["import Plugin from '@jbrowse/core/Plugin'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { version } from '../package.json'\nimport { AbstractSessionModel, isAbstractMenuManager } from '@jbrowse/core/util'\nimport * as MSA from 'react-msaview'\nimport ViewType from '@jbrowse/core/pluggableElementTypes/ViewType'\nimport GridOn from '@material-ui/icons/GridOn'\n\nexport default class MsaViewPlugin extends Plugin {\n name = 'MsaViewPlugin'\n version = version\n\n install(pluginManager: PluginManager) {\n console.log({ MSA })\n pluginManager.addViewType(\n () =>\n new ViewType({\n name: 'MsaView',\n //@ts-ignore\n stateModel: MSA.MSAModel,\n ReactComponent: MSA.MSAView,\n }),\n )\n }\n\n configure(pluginManager: PluginManager) {\n if (isAbstractMenuManager(pluginManager.rootModel)) {\n pluginManager.rootModel.appendToSubMenu(['Add'], {\n label: 'Multiple sequence alignment view',\n icon: GridOn,\n onClick: (session: AbstractSessionModel) => {\n session.addView('MsaView', {})\n },\n })\n }\n }\n}\n"],"names":["MsaViewPlugin","version","pluginManager","console","log","MSA","addViewType","ViewType","name","stateModel","ReactComponent","isAbstractMenuManager","rootModel","appendToSubMenu","label","icon","GridOn","onClick","session","addView","Plugin"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;IAQqBA;;;;;AAArB;;;;;;AACE,cAAA,GAAO,eAAP;AACA,iBAAA,GAAUC,OAAV;;AA0BD;;;;WAxBC,iBAAQC,aAAR;AACEC,MAAAA,OAAO,CAACC,GAAR,CAAY;AAAEC,QAAAA,GAAG,EAAHA;AAAF,OAAZ;AACAH,MAAAA,aAAa,CAACI,WAAd,CACE;AAAA,eACE,IAAIC,QAAJ,CAAa;AACXC,UAAAA,IAAI,EAAE,SADK;AAEX;AACAC,UAAAA,UAAU,EAAEJ,QAHD;AAIXK,UAAAA,cAAc,EAAEL;AAJL,SAAb,CADF;AAAA,OADF;AASD;;;WAED,mBAAUH,aAAV;AACE,UAAIS,qBAAqB,CAACT,aAAa,CAACU,SAAf,CAAzB,EAAoD;AAClDV,QAAAA,aAAa,CAACU,SAAd,CAAwBC,eAAxB,CAAwC,CAAC,KAAD,CAAxC,EAAiD;AAC/CC,UAAAA,KAAK,EAAE,kCADwC;AAE/CC,UAAAA,IAAI,EAAEC,MAFyC;AAG/CC,UAAAA,OAAO,EAAE,iBAACC,OAAD;AACPA,YAAAA,OAAO,CAACC,OAAR,CAAgB,SAAhB,EAA2B,EAA3B;AACD;AAL8C,SAAjD;AAOD;AACF;;;;EA3BwCC;;;;"}
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