jbrowse-plugin-mafviewer 1.4.3 → 1.4.5

package/dist/LinearMafRenderer/rendering/text.js

@@ -1,4 +1,3 @@
-import { getCharWidthHeight } from '../util';
 import { CHAR_SIZE_WIDTH, VERTICAL_TEXT_OFFSET } from './types';
 function getLetter(a, showAsUpperCase) {
     return showAsUpperCase ? a.toUpperCase() : a;
@@ -14,8 +13,7 @@ function getLetter(a, showAsUpperCase) {
  * @param rowTop - Top pixel position of the row
  */
 export function renderText(context, alignment, origAlignment, seq, leftPx, rowTop) {
-    const { ctx, scale, hp2, rowHeight, showAllLetters, mismatchRendering, contrastForBase, showAsUpperCase, } = context;
-    const { charHeight } = getCharWidthHeight();
+    const { ctx, scale, hp2, rowHeight, showAllLetters, mismatchRendering, contrastForBase, showAsUpperCase, charHeight, } = context;
     // Render text labels when zoomed in enough and row is tall enough
     if (scale >= CHAR_SIZE_WIDTH) {
         for (let i = 0, genomicOffset = 0, seqLength = alignment.length; i < seqLength; i++) {

package/dist/LinearMafRenderer/rendering/text.js.map

@@ -1 +1 @@
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+{"version":3,"file":"text.js","sourceRoot":"","sources":["../../../src/LinearMafRenderer/rendering/text.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,oBAAoB,EAAE,MAAM,SAAS,CAAA;AAI/D,SAAS,SAAS,CAAC,CAAS,EAAE,eAAwB;IACpD,OAAO,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;AAC9C,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,UAAU,UAAU,CACxB,OAAyB,EACzB,SAAiB,EACjB,aAAqB,EACrB,GAAW,EACX,MAAc,EACd,MAAc;IAEd,MAAM,EACJ,GAAG,EACH,KAAK,EACL,GAAG,EACH,SAAS,EACT,cAAc,EACd,iBAAiB,EACjB,eAAe,EACf,eAAe,EACf,UAAU,GACX,GAAG,OAAO,CAAA;IAEX,kEAAkE;IAClE,IAAI,KAAK,IAAI,eAAe,EAAE,CAAC;QAC7B,KACE,IAAI,CAAC,GAAG,CAAC,EAAE,aAAa,GAAG,CAAC,EAAE,SAAS,GAAG,SAAS,CAAC,MAAM,EAC1D,CAAC,GAAG,SAAS,EACb,CAAC,EAAE,EACH,CAAC;YACD,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE,CAAC;gBACnB,8CAA8C;gBAC9C,MAAM,IAAI,GAAG,MAAM,GAAG,KAAK,GAAG,aAAa,CAAA;gBAC3C,MAAM,UAAU,GAAG,CAAC,KAAK,GAAG,eAAe,CAAC,GAAG,CAAC,GAAG,CAAC,CAAA,CAAC,iCAAiC;gBACtF,MAAM,WAAW,GAAG,SAAS,CAAC,CAAC,CAAE,CAAA;gBACjC,iEAAiE;gBACjE,IAAI,CAAC,cAAc,IAAI,GAAG,CAAC,CAAC,CAAC,KAAK,WAAW,CAAC,IAAI,WAAW,KAAK,GAAG,EAAE,CAAC;oBACtE,GAAG,CAAC,SAAS,GAAG,iBAAiB;wBAC/B,CAAC,CAAC,CAAC,eAAe,CAAC,WAAW,CAAC,IAAI,OAAO,CAAC,CAAC,wCAAwC;wBACpF,CAAC,CAAC,OAAO,CAAA;oBACX,IAAI,SAAS,GAAG,UAAU,EAAE,CAAC;wBAC3B,oCAAoC;wBACpC,GAAG,CAAC,QAAQ,CACV,SAAS,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE,eAAe,CAAC,EAClD,IAAI,GAAG,UAAU,EACjB,GAAG,GAAG,MAAM,GAAG,oBAAoB,CACpC,CAAA;oBACH,CAAC;gBACH,CAAC;gBACD,aAAa,EAAE,CAAA;YACjB,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/LinearMafRenderer/rendering/types.d.ts

@@ -11,10 +11,7 @@ export declare const MIN_ROW_HEIGHT_FOR_BORDERS = 5;
 export declare const HIGH_BP_PER_PX_THRESHOLD = 10;
 export declare const INSERTION_BORDER_HEIGHT = 5;
 export declare const MIN_X_DISTANCE = 0.5;
-export interface Sample {
-    id: string;
-    color?: string;
-}
+export type { Sample } from '../../LinearMafDisplay/types';
 export interface GenomicRegion {
     start: number;
     end: number;
@@ -26,6 +23,7 @@ export interface RenderedBase {
     base: string;
     sampleId: number;
     isInsertion?: boolean;
+    isLargeInsertion?: boolean;
 }
 /**
  * Shared rendering context containing all necessary parameters for rendering operations
@@ -33,6 +31,7 @@ export interface RenderedBase {
 export interface RenderingContext {
     ctx: CanvasRenderingContext2D;
     scale: number;
+    bpPerPx: number;
     canvasWidth: number;
     rowHeight: number;
     h: number;
@@ -43,6 +42,8 @@ export interface RenderingContext {
     showAllLetters: boolean;
     mismatchRendering: boolean;
     showAsUpperCase: boolean;
+    charWidth: number;
+    charHeight: number;
     spatialIndex: RenderedBase[];
     spatialIndexCoords: number[];
     lastInsertedX: number;